Commit Graph

1835 Commits

Author SHA1 Message Date
Grahame Grieve 882d18251b fix up copy directory for case differences 2023-08-02 19:58:24 +10:00
Grahame Grieve 32f2f6acc7 warnings for status on terminology resources 2023-08-02 18:12:02 +10:00
Grahame Grieve 0eb96f1f0a fixes for extensions IG testing 2023-07-31 20:46:30 +10:00
Grahame Grieve b42c908328 More improved FHIRPath checking when validating 2023-07-31 14:37:41 +10:00
Grahame Grieve 5026ff3506 Fix invalid integer detection 2023-07-29 08:49:38 +10:00
Grahame Grieve c58703c63f Improved invariant checking 2023-07-29 08:49:27 +10:00
markiantorno 0165495626 Updating version to: 6.0.24-SNAPSHOT and incrementing test cases dependency. 2023-07-27 14:23:16 +00:00
markiantorno db5d2b07c3 Release: v6.0.23
## Validator Changes

* Update IPS versions for -ips parameter (and get it working again)
* fix up validation of constraints in differentials (wasn't always happening)
* add warnings when collection status isn't right
* Better information messages when CodeSystem.content = not-present
* Add character check in validator for illegal XML Unicode characters
* Fix path problem in NpmPackage (some simplifier packages couldn't be processed)
* Fix NPE validating codes in value sets with improper expansions

## Other code changes

* Add support for Liquid assign
* Switch to DateTime type for Android Support
* Code clean up: remove unused imports
* Fix JSON unicode encoding handling of chars <32 code points
***NO_CI***
2023-07-27 13:56:32 +00:00
Grahame Grieve efa52981d5
Merge pull request #1365 from hapifhir/do-20230726-android-remove-timestamp
Remove usage of java.sql.TimeStamp
2023-07-27 22:00:04 +10:00
Grahame Grieve 774440d0a7 Fix path problem in NpmPackage 2023-07-27 17:50:08 +10:00
Grahame Grieve 4eff9a3b68 fix up validation of FHIRPaths in differentials, and add warnings when collection status isn't right 2023-07-27 17:49:57 +10:00
Grahame Grieve 6afb151dff Better information when CodeSystem.content = not-present 2023-07-27 17:49:03 +10:00
dotasek 50047af493 Switch to ZonedDateTime implementation get tests passing 2023-07-26 17:08:08 -04:00
dotasek f88dae6ab8 WIP tests 2023-07-26 10:43:54 -04:00
dotasek 07a697c653 WIP tests 2023-07-26 10:43:37 -04:00
Grahame Grieve a3c32d86a0 add support for Liquid assign + Fix JSON unicode encoding and add character check in validator for illegal XML Unicode characters 2023-07-26 12:32:51 +10:00
Grahame Grieve 3eef08dab8 remove unused imports 2023-07-26 08:31:21 +10:00
Grahame Grieve fefd1ad1d6 fix -ips parameter and add -check-ips-codes parameter 2023-07-26 00:59:02 +10:00
markiantorno 592fba54cc Updating version to: 6.0.23-SNAPSHOT and incrementing test cases dependency. 2023-07-22 17:06:10 +00:00
markiantorno b7fd3be910 Release: v6.0.22
## Validator Changes

* Add support for private NPM registries requiring authentication
* Don't check FHIRPaths on differentials - not enough type info to test reliably
* Fix bugs in FHIRPath handling of logical models
* Fix minor bugs in type handling for Logical Models and R3 Profile validation
* Remove spurious warning message validating CDA documents
* Add value set qa checking
* Fixes to validator for new CDA package (proper handling of logical model types)
* Fix up bi-di warning message
* Add provisional support for alternate codes
* Workaround ClinicalImpression definition problem in core spec
* Fix to get context variables right when running invariants + fix for parent not always being populated + check type in derived profiles
* Fix checking FHIRPath statements on inner elements of type slices
* Fix scan of naming systems (error validating namespaces)
* Fix issue checking invariant expressions in R5

## Other code changes

* FHIRPath in HAPI mode: Strip returned IIdType of qualifier, version, and resourceType
* Update R4 and R4B FHIRPath implementations for changes picked up in R5 usage
* Fix obligation rendering message
* Fix missing extensions when converting value set properties
* Fix type of x-unknown-code-system in $validate-code response
* Fix CDA validation test case
* Much work on TxServer test case framework + Update terminology server implementation and tests for changes to test cases
* OMOP Vocabulary and ICFImporter development
* Add OWASP dependency check (#1347), upgrade many packages, remove ShEx
* Add github action to upload results
* Remove unused javalin dependency, also generate html reports
* Added test case for ExampleScenario conversion (R4/R5) and significantly bulked up the conversion process
* Remove unneeded resources (#1346) (help16.png)
* Add test for setVsAsUrl parameter setting (#1345)
***NO_CI***
2023-07-22 16:41:19 +00:00
dotasek 2654e85df3
Implement private NPM server (#1337)
* WIP start adding NPM data.

* WIP 2 Testing against verdaccio npm

* WIP private npm package servers

* WIP2 add server type config

* WIP3 parse tarball url

* Fix package date parsing, start mocking server tests

* Add dummy package, assert authorization and content

* Add more tests

* Add serverType to settings test

* Ignore tgz files for bidi check

* tighter bidi ignore

* different ignore regex

* Make packageManagement settings, allow ignoring default package servers

* New tests + token authentication

* Manage 404s when configured servers don't have package
2023-07-22 11:01:36 -04:00
Grahame Grieve 672ebf0348 Fix CDA validation test case 2023-07-21 21:17:51 +10:00
Grahame Grieve 8980df2364 add value set qa checking 2023-07-21 21:17:12 +10:00
Grahame Grieve d8e2e020af fix failing tests 2023-07-21 12:41:56 +10:00
Grahame Grieve fc75c0ea6b fix up bi-di warning message 2023-07-20 08:21:34 +10:00
Grahame Grieve 616cf5fdb3 Add provisional support for alternate codes 2023-07-20 08:21:19 +10:00
Grahame Grieve 4fb70ba1e8 other missed code 2023-07-18 11:08:57 +10:00
Grahame Grieve ced714305d Fix to get context variables right when running invariants + fix for parent not always being populated + check type in derived profiles 2023-07-18 11:05:06 +10:00
markiantorno 6a187a9232 Updating version to: 6.0.22-SNAPSHOT and incrementing test cases dependency. 2023-07-07 12:36:19 +00:00
markiantorno 45ae02cf1d Release: v6.0.21
## Validator Changes

* Fix up processing conditions in -watch mode
* Fixes for validating against logical models (for fixed up CDA core package)
* Better testing of extension context (when limited to profile)
* Fix handling of UCUM codes when no terminology server
* Report hints and warnings on some code validation that had been not reported
* Better validation of valuesets when checking derived profiles

## Other code changes

* Render reference identifier if there is one when rendering references
* Hide empty place holder column when rendering by profile
* Fix npe rendering extensions + improve base64 presentation
* OMOP terminology importer
* update SPDX code system in R4/R4B for support for not-open-source
* Fix up type handling for conversions between R4/R4B and R5 (OperationDefinition fix)
***NO_CI***
2023-07-07 12:10:05 +00:00
Grahame Grieve 2cb7c052af OMOP importer 2023-07-05 07:23:47 +10:00
Grahame Grieve 09b653d9ed better testing of extension context (when limited to profile) 2023-07-05 07:23:32 +10:00
markiantorno 6db701767a Updating version to: 6.0.21-SNAPSHOT and incrementing test cases dependency. 2023-06-30 23:19:08 +00:00
markiantorno 6a6c425562 Release: v6.0.20
## Validator Changes

* no changes

## Other code changes

 * Fix for SPDR not-open-source in code
 * fix name and title in VSAC import process
 * More work on Android support + fix issues in NPM package installation that caused
***NO_CI***
2023-06-30 22:52:51 +00:00
Grahame Grieve 5382025b44 Fix bug in Package installation 2023-07-01 07:31:51 +10:00
Grahame Grieve eb20ad87e8 Merge remote-tracking branch 'origin/master' 2023-06-30 17:11:09 +10:00
Grahame Grieve bef82f5630 remove bad logging 2023-06-30 16:32:29 +10:00
markiantorno 3c8e26f078 Updating version to: 6.0.20-SNAPSHOT and incrementing test cases dependency. 2023-06-30 05:37:45 +00:00
markiantorno 3b82a4d829 Release: v6.0.19
## Validator Changes

* no changes

## Other code changes

* Fix for SPDR not-open-source in code
* fix name and title in VSAC import process
* More work on Android support
***NO_CI***
2023-06-30 05:08:20 +00:00
Grahame Grieve adfa344e5e pay attention to closing streams 2023-06-30 14:38:04 +10:00
Grahame Grieve dfb0e0d5b9 Fix windows file renaming issue 2023-06-30 13:42:46 +10:00
Grahame Grieve 99d6060363 Android support 2023-06-30 08:41:27 +10:00
Grahame Grieve 1dd41134a0 Stream line Package install process for Android 2023-06-30 08:41:18 +10:00
markiantorno 06a1d523a3 Updating version to: 6.0.19-SNAPSHOT and incrementing test cases dependency. 2023-06-29 05:12:43 +00:00
markiantorno 76955fa3d5 Release: v6.0.18
## Validator Changes

* Fix issue loading SPDX value set + Fix missing code for 'not-open-source'
* Allow target to be treated as source when validating FML
* Fix issues validating names and urls for logical models
* Don't duplicate warnings about missing expressions on invariants in R5

## Other code changes

* Handle case where base hasn't got a snapshot generating snapshots
***NO_CI***
2023-06-29 04:47:28 +00:00
Grahame Grieve bb66eccf45 Allow target to be treated as source when validating FML 2023-06-29 13:18:01 +10:00
Grahame Grieve 2cdd92868b SPDX: Fix missing code for 'not-open-source' 2023-06-29 13:14:28 +10:00
markiantorno 7ffbe7703d Updating version to: 6.0.18-SNAPSHOT and incrementing test cases dependency. 2023-06-28 07:13:43 +00:00
markiantorno 345151b132 Release: v6.0.17
## Validator Changes

* Fix check for correct type name use in logical models (for CDA)
* Fix bug loading packages (introduced working on minimal loading)
* Fir NPE processing R3 Structure Definitions
* exempt ele-1 from constraint consistency checking
* Add -watch-scan-delay and -watch-settle-time
* fix missing error validating structure maps
* Fix bug with erroneous warning in snapshot generation about profile not being found
* Update SPDX code system to latest version
* Output proper filename in validation log

## Other code changes

* Refactor version utility code
* Fix help placeholders
* Better error when handling loading resources
* fix duplicate element generation in CDA.AD type snapshot generation
* Fix message about rendering problem. Actual solution... not sure.
* Minimal Memory model changes for Npm for Android
***NO_CI***
2023-06-28 06:47:19 +00:00
Grahame Grieve a0c776e61d
Merge pull request #1327 from hapifhir/do-20230627-fix-help-placeholders
Fix CLI '-help' text placeholders
2023-06-28 15:51:29 +10:00
Grahame Grieve 9b94e6a1ec Fix test for correct type name in logical models (CDA) 2023-06-28 15:10:20 +10:00
Grahame Grieve 284ad1c2be fix bug loading package 2023-06-28 11:06:09 +10:00
dotasek a114d751db Refactor version utility code 2023-06-27 11:29:24 -04:00
Grahame Grieve 4b07f4f7dc fix missing error validation structure maps 2023-06-27 22:18:56 +10:00
Grahame Grieve ba27fc9da7 fix testing bugs 2023-06-24 09:36:45 +10:00
Grahame Grieve 3570bcb07f Finish changes for Npm loading changes 2023-06-24 09:05:14 +10:00
Grahame Grieve 2f253f3457 Update SPDX implementation 2023-06-24 08:55:51 +10:00
Grahame Grieve ff44e50fc3
Merge pull request #1318 from hapifhir/gg-202206-android-1
Allow custom folder for NPM Cache, for Android
2023-06-22 15:06:55 +10:00
Grahame Grieve 0615f2a163 Minimal Memory model for NpmPackage 2023-06-22 15:05:59 +10:00
Grahame Grieve 74c30d9143 Merge remote-tracking branch 'origin/master' 2023-06-21 18:50:41 +10:00
markiantorno 67cb3006f2 Updating version to: 6.0.17-SNAPSHOT and incrementing test cases dependency. 2023-06-21 07:40:48 +00:00
Grahame Grieve 189d9811c0 Allow custom folder for NPM Cache, for Android 2023-06-21 17:13:17 +10:00
markiantorno 8bd0f0b1ad Release: v6.0.16
## Validator Changes

Post DevDays Release - many significant changes!

* Add ```-watch-mode``` parameter (See [doco](https://confluence.hl7.org/display/FHIR/Using+the+FHIR+Validator#UsingtheFHIRValidator-Watchmode))
* Start checking constraint expressions defined in profiles and logical models, and update FHIRPath for logical models
* Start checking ElementDefinition.mustHaveValue and ElementDefinition.valueAlternatives
* Start validating derived questionnaires
* Tighten up checking on FHIRPath - enforce use of ```'```, and don't accept ```"``` for string delimiters
* Add ```-allow-double-quotes-in-fhirpath``` parameter ([doco](https://confluence.hl7.org/display/FHIR/Using+the+FHIR+Validator#UsingtheFHIRValidator-LegacyFHIRPathSetting))
* Fix error when validating profiles that mix canonical() and Reference() types
* Fix extension context checking
* Fix erroneous FHIRPath expression eld-11 when loading
* Fix incomplete support for ```-display-issues-are-warnings``` parameter
* Fix broken NullFlavor binding in R4
* Fix various NPE errors doing value set validation (+ logging tx operations)
* Minor performance improvements to start up time
* Auto-update implied slicing elements when min < slice min

## Other code changes

* Add CodeQL to the build process
* Various NPE fixes
* Add getValueAsString(TemporalPrecisionEnum) method to date/time types
* Fix rendering for unresolvable ValueSets
* Remove r4b eclipse project files
* Upgrade multiple dependency libraries (per CodeQL)
* Only record sorting errors when generating snapshots when debug mode is on
* Tighten up SSL certificate checking
* Partial refactor of CLI parameter handling
* Fix path regex (per CodeQL)
* Remove erroneous logging from conversion tests
* Rendering improvements for various profile related extensions
* More work on TxTests operation (lenient wrt extensions)
* Fix handling of summary extension (delete duplicate tools summary extension, and don't inherit it)
* Reprocess URLs in Markdown extensions on both StructureDefinition and ElementDefinition
* Improve URL detection in markdown when reprocessing URLs
***NO_CI***
2023-06-21 07:09:07 +00:00
Grahame Grieve fea8d5c29a fix test cases 2023-06-21 11:40:39 +10:00
Grahame Grieve ea8e26df62 update release notes 2023-06-21 10:53:54 +10:00
Grahame Grieve 098b8d5520 fix extension context checking 2023-06-21 09:22:47 +10:00
Grahame Grieve 551892c095 Merge remote-tracking branch 'origin/master' 2023-06-20 09:11:51 +10:00
Grahame Grieve ec7b79bc1e Fix rendering for unresolvable value sets 2023-06-20 07:02:26 +10:00
dotasek 829882773a
More use of dependencyManagement, bump guava (#1313) 2023-06-19 12:26:21 -04:00
Grahame Grieve ac68a99429 More validate invariants 2023-06-19 22:43:24 +10:00
Grahame Grieve 19d3952b11 Validate FHIRPath constraints in IGs and profiles 2023-06-19 22:42:02 +10:00
Grahame Grieve 8e0e360350
Merge pull request #1306 from hapifhir/do-20230612-ssl-too-trusting
Get rid of too trusting SSLCertTruster
2023-06-19 02:31:17 +10:00
Grahame Grieve 712582d941 fix test cases 2023-06-18 19:48:33 +10:00
Grahame Grieve ff92de7c1d Fix failing tests 2023-06-18 18:18:19 +10:00
Grahame Grieve dfb4404ce6 Add support for mustHaveValue and valueAlternatives + render imposesProfile + compliesWithProfile 2023-06-18 13:00:58 +10:00
Grahame Grieve 64f84274af Validation Derived Questionnaires 2023-06-17 09:41:06 +10:00
dotasek 7fa80ac80b Get rid of too trusting SSLCertTruster 2023-06-12 15:53:41 -04:00
dotasek ff7997d7d2
Fix older jetbrains annotations transitive dependency (#1299) 2023-06-09 14:43:49 -04:00
markiantorno 8237fb862b Updating version to: 6.0.16-SNAPSHOT and incrementing test cases dependency. 2023-06-08 21:23:36 +00:00
markiantorno cc14a4142f Release: v6.0.15
## Validator Changes

* no changes

## Other code changes

* Update commons-beanutils and apache.poi dependencies
***NO_CI***
2023-06-08 20:56:04 +00:00
markiantorno 10f466487b Updating version to: 6.0.15-SNAPSHOT and incrementing test cases dependency. 2023-06-08 05:03:27 +00:00
markiantorno 3969ac75c4 Release: v6.0.14
## Validator Changes

* no changes

## Other code changes

* Fix bugs in language handling
* Implement Trivy vulnerability scanning and update POI and okhttp libraries
***NO_CI***
2023-06-08 04:33:30 +00:00
Grahame Grieve 8fea7e3710
Merge pull request #1294 from hapifhir/gg-202206-languages
fix bugs in language handling
2023-06-07 22:19:42 +02:00
Grahame Grieve 8c412d78ef fix bugs in language handling 2023-06-07 21:31:25 +02:00
markiantorno 619703dbf8 Updating version to: 6.0.14-SNAPSHOT and incrementing test cases dependency. 2023-06-07 13:14:17 +00:00
markiantorno b704ea50fc Release: v6.0.13
## Validator Changes

* no changes

## Other code changes

* add clear() to JsonObject
***NO_CI***
2023-06-07 12:48:04 +00:00
Grahame Grieve bfdb28b96e add JsonObject.clear() 2023-06-07 13:57:56 +02:00
markiantorno a605d944bc Updating version to: 6.0.13-SNAPSHOT and incrementing test cases dependency. 2023-06-06 21:27:18 +00:00
markiantorno 8edd61a197 Release: v6.0.12
## Validator Changes

* Improve message when there's multiple display options

## Other code changes

* Fix loading issue with r5 extensions
* NPM package compression improvements
* Update language file handling to handle context
* Remove logical models in minifier, and other improvements
* Auto update minimum slicing cardinality when slicer is assumed (extensions)
***NO_CI***
2023-06-06 20:55:08 +00:00
Grahame Grieve a4f54f519f
Merge pull request #1290 from hapifhir/gg-202206-cardinality-fixes
Gg 202206 cardinality fixes
2023-06-05 23:26:13 +02:00
Grahame Grieve 33d60c2496 clean up display error messages 2023-06-05 21:17:12 +02:00
Grahame Grieve 0bcb9d6196 make NPM packages slightly smaller 2023-06-05 21:17:02 +02:00
Grahame Grieve 01b4219259 update language file handling to handle context properly 2023-06-05 21:16:51 +02:00
markiantorno 72eee9cab7 Updating version to: 6.0.12-SNAPSHOT and incrementing test cases dependency. 2023-06-02 14:24:34 +00:00
markiantorno 44db954743 Release: v6.0.11
## Validator Changes

* no changes

## Other code changes

* Increment CQFramework dependency
***NO_CI***
2023-06-02 13:58:04 +00:00
Grahame Grieve d4d5b42aa1 add Resource Dependency walker + Resource Minifier functionality 2023-05-31 06:32:55 +03:00
markiantorno f238d1af14 Updating version to: 6.0.11-SNAPSHOT and incrementing test cases dependency. 2023-05-29 22:43:58 +00:00
markiantorno edd06865c7 Release: v6.0.10
## Validator Changes

* no changes

## Other code changes

* Delete unused package import that breaks downstream JavaDoc
***NO_CI***
2023-05-29 22:14:49 +00:00
markiantorno 253357e5aa Updating version to: 6.0.10-SNAPSHOT and incrementing test cases dependency. 2023-05-29 13:44:41 +00:00
markiantorno 4014698c7d Release: v6.0.9
## Validator Changes

* Add support for "Obligation Profiles" (see https://chat.fhir.org/#narrow/stream/179177-conformance/topic/Proposed.20new.20Profile.20features)
* Adjust slice min/max checking to ignore type slices (rules are different in this case)
* Properly handle validating mime/type when terminology server is not available

## Other code changes

* Rework Pipelines - more stability and quicker
* Fix bug where elementmodel.Element.copy() didn't clone children. Users of the Element Model (not the normal model) should check all uses of copy. (Only known users are Validator + IG publisher)
* Add nimbus & ZXing to core library dependencies for forthcoming improved SHC/SHL support
***NO_CI***
2023-05-29 13:18:12 +00:00