Commit Graph

1156 Commits

Author SHA1 Message Date
Grahame Grieve e1b9423688
Update pom.xml 2023-03-02 12:28:13 +11:00
dotasek f7926f4897 Bump test cases version 2023-03-01 18:17:23 -05:00
dotasek 76c01a98aa
Add basic checkstyle plugin config (#1122)
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-02-24 15:05:49 -05:00
markiantorno e9607783da Updating version to: 5.6.100-SNAPSHOT and incrementing test cases dependency. 2023-02-23 18:15:08 +00:00
markiantorno e2185d7d5c Release: v5.6.99
## Validator Changes

* Fix validation for query references with empty parameter values
* Fix validation for conditional references

## Other code changes

* Fix resource rendering for conditional references
* Fix bug caused by changing DiagnosticReport.conclusion to markdown
* Track target types on references in FHIRPath
* Minor type checking fixes for FHIRPath
* Fix bugs in FHIRPath type checking discovered during R5 preparation
* Add standardsStatus support to core model
* Update okhttp library
* Allow HTTPS for terminology server URL
* Update table generator to suppress external links in base row and column
***NO_CI***
2023-02-23 17:50:57 +00:00
dotasek 5d6636ba8c
Bump okhttp version (#1131)
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-02-23 11:14:50 -05:00
dotasek 34b1bd05c5
Fix https for terminology server (#1118)
* Failing test

* Missing bracket

* Fix issue with https tx server

* Expand test coverage

* Bump maven-jar-plugin

Maybe fix build problem?

---------

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-02-17 10:02:49 -05:00
markiantorno 9c768415f2 Updating version to: 5.6.99-SNAPSHOT and incrementing test cases dependency. 2023-02-15 10:37:45 +00:00
markiantorno 7ec74d0321 Release: v5.6.98
## Validator Changes

* Fix bug checking canonical URLs in bundles with dashes in them
* Fix extension messages (modifier and normal messages reversed)
* Change how error location paths are reported in bundles for easier resolution (no counting!)
* fix bugs checking whether binding is allowed in corner cases

## Other code changes

* Rendering Improvements: Additional Bindings, Search Parameters, Operation Definitions
* FHIRPath implementations for comparable(), highBoundary(), lowBoundary()
* Fix list of canonical resources from VersionUtilities
* Fix bug parsing html entities in XHTML parser
* Rename extension to http://hl7.org/fhir/StructureDefinition/structuredefinition-imposeProfile
***NO_CI***
2023-02-15 10:13:36 +00:00
Grahame Grieve bba2340bbc Setup release 2023-02-15 20:41:20 +11:00
Grahame Grieve 949110b465 test case snapshot 2023-02-12 18:34:54 +11:00
markiantorno 97604fdff5 Updating version to: 5.6.98-SNAPSHOT and incrementing test cases dependency. 2023-02-07 12:55:19 +00:00
markiantorno c91376f3b9 Release: v5.6.97
## Validator Changes

* no changes

## Other code changes

* Fix for Extensions moving in R5
***NO_CI***
2023-02-07 12:28:44 +00:00
markiantorno eec7c33e63 Updating version to: 5.6.97-SNAPSHOT and incrementing test cases dependency. 2023-02-05 21:04:53 +00:00
markiantorno 729e7afb33 Release: v5.6.96
## Validator Changes

* no changes

## Other code changes

* Fix bug with duplicate value in getResourceNames()
***NO_CI***
2023-02-05 20:42:24 +00:00
markiantorno b3cebe7bc6 Updating version to: 5.6.96-SNAPSHOT and incrementing test cases dependency. 2023-02-03 20:09:35 +00:00
markiantorno 1696b56b50 Release: v5.6.95
## Validator Changes

* Fixes for FHIRPath as() operator in r4 and r5

## Other code changes

* no changes
***NO_CI***
2023-02-03 19:45:12 +00:00
dotasek a8d93cba8b Bump test cases to release version 2023-02-03 13:32:08 -05:00
Grahame Grieve ea9333b322
Gg 202302 fhirpath as (#1102)
* fix type of issue source extension

* update extension extractor

* FHIRPath changes for as - case and singleton issues

* minor fixes for extension rendering

* Update test cases version

---------

Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-02-03 13:14:51 -05:00
markiantorno ea41a8b6a6 Updating version to: 5.6.95-SNAPSHOT and incrementing test cases dependency. 2023-02-02 17:07:22 +00:00
markiantorno 67329e20ad Release: v5.6.94
## Validator Changes

* no changes

## Other code changes

* Test release
***NO_CI***
2023-02-02 16:34:58 +00:00
markiantorno e922cc2a97 Updating version to: 5.6.94-SNAPSHOT and incrementing test cases dependency. 2023-02-01 07:27:59 +00:00
markiantorno 4e97bb0d5a Release: v5.6.93
## Validator Changes

* Fix for NPE rendering resources
* Consider CanonicalResource to be a CanonicalResource when validating profile references
* Work around error in R5 sdf-29 invariant

## Other code changes

* XHTML processing: Cater for "." in XML element and attribute names
* Handle R3 encoding of primitive values when validating profiles
* Improve error messaging when validating StructureDefinition
* Temporary Support for MedicationStatement in R5
* Work around for Identifier.use = ? in THO R5 package (old error)
* Rework Package API to allow for authentication on package servers
* Structure mapping now finds source Structure Definition by URI and sets ParserBase logical property appropriately.
* DOn't convert ig-r4 when converting package versions
***NO_CI***
2023-02-01 07:02:20 +00:00
Grahame Grieve 8a372c4737 release 2023-02-01 17:06:19 +11:00
markiantorno cb441456a8 Updating version to: 5.6.93-SNAPSHOT and incrementing test cases dependency. 2023-01-20 23:14:26 +00:00
markiantorno dc677cad51 Release: v5.6.92
## Validator Changes

* update FHIRPath implementation for corrections to 'as' (R5 only in validator)
* Critical Security fix: enforce correct paths when unpacking archives (SecurityAdvisory-1082, CVE TBA)

## Other code changes

* Update to latest FHIRPath for older versions
* Add new ElementModel based parser for StructureMaps
* go-publish related changes
* FTP Client upload and logging improvements
* Refactor base64 handling for Android compatibility

## Security Note

The validator unzips archive files to the local file system when
it is scanning zip files it has been asked to validate, and when it is
installing packages. These processes are now resistant to the zip-slip
vulnerability.
***NO_CI***
2023-01-20 22:57:29 +00:00
Mark Iantorno a2b766a9ec Updating test case dependency to v1.2.9
***NO_CI***
2023-01-20 20:06:34 +00:00
Grahame Grieve f8e6371e1f
Merge branch 'master' into gg-202301-sm-errors 2023-01-20 19:44:24 +11:00
Vitor Pamplona 2c60f5b5e3
Adding animal sniffer to display all issues related to android compatibility. (#1050) 2023-01-18 18:39:44 -05:00
Grahame Grieve 26027fa3d6 update FHIRPath implementation for discussion at 84a07a6a92 2023-01-19 06:59:45 +11:00
markiantorno 4367813a2c Updating version to: 5.6.92-SNAPSHOT and incrementing test cases dependency. 2023-01-17 21:59:38 +00:00
markiantorno 7b22d0355b Release: v5.6.91
## Validator Changes

* Fixed validation of URNs
* Check profiles don't have slicing on roof

## Other code changes

* Fix significant performance issue with profile xls generation
* Fix issue with setProperty dropping extensions in R3 - R5
* Debug logging improvements generating snapshots
* Fix issues with types missing in CDA IGs
* Fix problem converting ActivityDefinition R4(B)/R5
* More work on FTP Client
***NO_CI***
2023-01-17 21:40:28 +00:00
dotasek a5b8a5465d Bump test case version to 1.2.8 2023-01-17 15:30:56 -05:00
Grahame Grieve 4b1a3dba46 Improve URN validation 2023-01-16 22:13:53 +11:00
markiantorno c52777c462 Updating version to: 5.6.91-SNAPSHOT and incrementing test cases dependency. 2023-01-14 06:35:33 +00:00
markiantorno ac16aae300 Release: v5.6.90
## Validator Changes

* Better tracking and reporting of snapshot generation issues
* Update FHIRPath implementation to R4 with all corrections and extensions from R5 implemnetation

## Other code changes

* Inclusion of SAXON dependency for processing XSLT
* Error message spacing correction
* Basic FTPClient implementation
* test NPE in markdown processing
* go-publish support
* Start implementing loading structure maps with validation
***NO_CI***
2023-01-14 06:17:06 +00:00
dotasek 67e7dce610 Bump fhir-test-cases 2023-01-14 00:13:19 -05:00
Grahame Grieve 12e6b04c2b
Merge pull request #1061 from hapifhir/gg-202301-snapshot-tracking
better tracking and reporting of snapshot generation issues
2023-01-09 15:36:24 +11:00
Grahame Grieve 8902898428 better tracking and reporting of snapshot generation issues 2023-01-09 08:03:24 +11:00
dotasek 0fd3c4af42 Merge branch 'master' into do-reintroduce-saxon-dependency 2023-01-06 17:00:40 -05:00
markiantorno b6cec730b5 Updating version to: 5.6.90-SNAPSHOT and incrementing test cases dependency. 2023-01-06 02:08:34 +00:00
markiantorno a6745a9016 Release: v5.6.89
## Validator Changes

* Add support for fhir_comments in R2/R2B
* Add validator checking around versions in extension URLs
* Fix bug generating cross-version extensions

## Other code changes

* Fix minor NPEs running IG publisher
* Add new PE module (PEDefinition/PEInstance)
* Add support for liquid filters (resolve FHIRPath conflict)
* Fix up round-tripping of XPath constraints R4/R5
* Refactor R5 ProfileUtilities (and move rendering to rendering package)
* Fix appending text when generating snapshots
***NO_CI***
2023-01-06 01:51:20 +00:00
Grahame Grieve 0633baa9bf fix 2023-01-06 11:41:32 +11:00
Grahame Grieve 96f62b0f31 set up release 2023-01-06 10:57:14 +11:00
dotasek df100a2d34 Restore saxon dependency dropped by HAPI FHIR 2023-01-05 17:11:35 -05:00
Grahame Grieve 900f471dda upgrade test case dependency 2022-12-24 08:42:02 +13:00
markiantorno aaa5c9d6a4 Updating version to: 5.6.89-SNAPSHOT and incrementing test cases dependency. 2022-12-16 01:40:27 +00:00
markiantorno a3a1e79674 Release: v5.6.88
## Validator Changes

* Remove use of .fhir/package-client cache (only use the main .fhir/package now)

## Other code changes

* Hack work around for broken template input for R5 OperationOutcome
* Fix up problems with test case consistency in R5 test cases
* Add R5-snapshot3 version enum to R4 version list
***NO_CI***
2022-12-16 01:19:52 +00:00
Grahame Grieve 71e45d2a50 set up release 2022-12-16 11:46:06 +11:00
Grahame Grieve 8b7890bea2 removing caching package client - rests on invalid assumptions 2022-12-16 08:49:30 +11:00
markiantorno ba67d790b8 Updating version to: 5.6.88-SNAPSHOT and incrementing test cases dependency. 2022-12-14 03:25:16 +00:00
markiantorno 6d8cd59f1e Release: v5.6.87
## Validator Changes

* Change Java minimum version from 8 to 11
* Fix Error message missing parameter (very minor fix)

## Other code changes

* Refactoring package-list.json handling
* Upgrade code to latest R5 release (Snapshot 3)
* Fix bug with version patching loading package for the first time + fix bug determining spec reference
* Add Ids to profile spreadsheets
***NO_CI***
2022-12-14 02:48:33 +00:00
Grahame Grieve 659457bb65
Merge branch 'master' into gg-202212-r5-update 2022-12-14 11:55:31 +11:00
Grahame Grieve 9aeb39671b fix to get tests passing again. If I'm lucky 2022-12-14 11:54:14 +11:00
Grahame Grieve e9d8400a78 fix package loading bug 2022-12-14 09:09:53 +11:00
Grahame Grieve b3a97db37b upgrade test dependency 2022-12-14 07:31:00 +11:00
Grahame Grieve 747a35a078 test case snapshot 2022-12-14 06:34:26 +11:00
markiantorno 0e619971c4 Updating version to: 5.6.87-SNAPSHOT and incrementing test cases dependency. 2022-12-12 20:14:04 +00:00
markiantorno bbf74e6f91 Release: v5.6.86
## Validator Changes

* Change Java minimum version from 8 to 11
* Fix Error message missing parameter (very minor fix)

## Other code changes

* Refactoring package-list.json handling
***NO_CI***
2022-12-12 19:56:58 +00:00
Grahame Grieve b761fb734f set up release 2022-12-13 05:45:07 +11:00
Grahame Grieve f5d486f171 refactoring package-list.json handling 2022-12-12 19:54:37 +11:00
markiantorno 915d5e89b7 Updating version to: 5.6.86-SNAPSHOT and incrementing test cases dependency. 2022-12-09 18:40:17 +00:00
markiantorno c01a9444a4 Release: v5.6.85
## Validator Changes

* Change rules around Document and Link Message validation (see [Jira](https://jira.hl7.org/browse/FHIR-39502) and [Zulip](https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/Entry.20isn't.20reachable.20by.20traversing.20from.20first.20Bundle.20entry) for details)
* Allow https://example in questionnaire example links

## Other code changes

* Rendering Improvements for deprecated codes Including deprecation reason
* Add Accept header fetching JSON
* Fix version comparison bug
* Fixes for producing profile summary in IGs
* Add contents to .index.json and bump to v2
* Fix stated package & version in alternate versions packages
* Refactor ProfileUtilities.generateSnapshot
* Fix bug in XHTML generation around empty tags
* Fix NPE appending slashes
* Fix rendering timing to not use a specific verb
* Fix R2 - RX ValueSet convertor for Code Systems
***NO_CI***
2022-12-09 18:23:37 +00:00
Grahame Grieve fcee624b45 release 2022-12-10 04:49:10 +11:00
dotasek d762740950
Bump HAPI FHIR to 6.2.1 + jacoco + byte_buddy (#1007)
* Bump HAPI FHIR to 6.2.1 + jacoco + byte_buddy

* Failing test

* GitHub complains about missing newlines.

* ACTUALLY bump HAPI, include saxon libs that disappeared

* Update maven.compiler.* properties, drop surefire-java-8 profile

* bump exec plugin

* Try running with JAVA_HOME explicitly

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-12-06 10:52:52 -05:00
Grahame Grieve 2891aae9b1 fix test case dependency 2022-12-05 13:42:03 +11:00
markiantorno 7966deb05c Updating version to: 5.6.85-SNAPSHOT and incrementing test cases dependency. 2022-12-01 05:52:06 +00:00
markiantorno b0d3dae149 Release: v5.6.84
## Validator Changes

* Perform canonical resolution using package dependencies even for version specific references (workaround for VSAC bad behaviour)

## Other code changes

* Fix conversion between R3 andR4/R5 for Immunization.notGiven
* Fix parameter handling for tx server responses
* Add cast support for more types in FML implementation
* Fixes to GQL Schema generation
***NO_CI***
2022-12-01 05:35:31 +00:00
Grahame Grieve 2ee93d996c release 2022-12-01 13:35:25 +11:00
Grahame Grieve fedfa88ffb refactor resource reference resolution to use package dependencies whereever possible 2022-12-01 08:16:00 +11:00
markiantorno 19e957ef53 Updating version to: 5.6.84-SNAPSHOT and incrementing test cases dependency. 2022-11-29 23:46:32 +00:00
markiantorno b939b33040 Release: v5.6.83
## Validator Changes

* no changes

## Other code changes

* Update FHIR test cases to released version
***NO_CI***
2022-11-29 23:29:15 +00:00
dotasek 6d11fe9546
Update pom.xml
Remove SNAPSHOT from fhir-test-cases version
2022-11-29 16:58:21 -05:00
markiantorno ab00f53ee7 Updating version to: 5.6.83-SNAPSHOT and incrementing test cases dependency. 2022-11-29 18:22:35 +00:00
markiantorno b11bf21f9b Release: v5.6.82
## Validator Changes

* no changes

## Other code changes

* Fix Turtle generation
***NO_CI***
2022-11-29 18:05:15 +00:00
markiantorno 63f905d184 Updating version to: 5.6.82-SNAPSHOT and incrementing test cases dependency. 2022-11-28 18:44:16 +00:00
markiantorno 2715d811dc Release: v5.6.81
## Validator Changes

* Avoid repeated R5 Extension loading in ValidatorService
* Fix problems validating logical models
* Fix `-locale` parameter functionality
* Add Spanish internationalization phrases

## Other code changes

* ProfileUtilities: Provide Standards Status in tree view
* JSONParser: numerous r4b/r5 speed improvements and fixes
* FHIRPathEngine: Catch exceptions resolving references in r5
* Handle null source and target in ConceptMap conversions
* Provide consistent rendering of comments in examples in IGs
* Preparations for changes to IG Publisher narrative generation
* Fix for Identifier.use conversion in dstu3
***NO_CI***
2022-11-28 18:23:09 +00:00
Grahame Grieve b2e2c68f7e minor typo fixes in validation messages 2022-11-22 12:45:33 -03:00
markiantorno 01d212afac Updating version to: 5.6.81-SNAPSHOT and incrementing test cases dependency. 2022-11-22 14:28:51 +00:00
markiantorno 3ab720a6af Release: v5.6.80
## Validator Changes

* Improved Loading speed (20% reduction)
* Fix issue handling path on content references on deeply nested content

## Other code changes

* Fix rendering issue when reference.reference missing
* Add rule date to validation messages so new rules can be highlighted
***NO_CI***
2022-11-22 14:05:59 +00:00
Grahame Grieve 2a0eef6ddf set up release 2022-11-22 10:13:42 -03:00
Grahame Grieve 8136b00c86 work on loading speed for validator 2022-11-21 18:46:47 -03:00
markiantorno cc842bc114 Updating version to: 5.6.80-SNAPSHOT and incrementing test cases dependency. 2022-11-20 19:32:31 +00:00
markiantorno ee7ba71b29 Release: v5.6.79
## Validator Changes

* no changes

## Other code changes

* fix references to LOINC codes in generated narrative
***NO_CI***
2022-11-20 18:59:55 +00:00
Grahame Grieve 0fe6bae54b release 2022-11-20 15:20:33 -03:00
Grahame Grieve bce3f5464f Merge remote-tracking branch 'origin/master' 2022-11-20 12:57:48 -03:00
Grahame Grieve 5cda3573be fix for non-breaking space usage 2022-11-20 12:27:41 -03:00
markiantorno d7d93b486b Updating version to: 5.6.79-SNAPSHOT and incrementing test cases dependency. 2022-11-17 21:34:46 +00:00
markiantorno 14a8c388fd Release: v5.6.78
## Validator Changes

* Validate HTML entities in XHTML in resources

## Other code changes

* Stop producing XHTML entities in resources when rendering
***NO_CI***
2022-11-17 21:15:59 +00:00
Grahame Grieve f4ed207326 release 2022-11-17 15:41:16 -03:00
Grahame Grieve 28d107b4ae Validate XHTML entities in XML 2022-11-17 15:21:17 -03:00
markiantorno bb8775bfdb Updating version to: 5.6.78-SNAPSHOT and incrementing test cases dependency. 2022-11-16 22:55:59 +00:00
markiantorno 41ffa42dc6 Release: v5.6.77
## Validator Changes

* Minor fix to jurisdiction output (+ handle case where JVM has no locale)
* Add support for extensions parameter
* Make all error messages include version of underlying resource if available
* Accept display for code from ValueSet CLD if no code system available
* Various minor improvements to error messages

## Other code changes

* Minor clean up in test cases
* Fix up i18n support to handle pluralization properly
* Refactor resource narrative generation rules (GenerationRules.X)
* Display resource type in generated narrative
* Add support for generating R4 and R4B packages
* Add support for generating XVer packages
***NO_CI***
2022-11-16 22:38:33 +00:00
Grahame Grieve 47443acaf3 prepare release 2022-11-16 18:36:02 -03:00
dotasek 220cf6b531
Remove excluded tests (#984)
* Fix failing test, document test cases.

* Code cleanup

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-11-14 09:30:43 -05:00
dotasek 183f9ecfd2 Remove _PLURAL labels from keys 2022-11-07 16:39:40 -05:00
markiantorno 212096f228 Updating version to: 5.6.77-SNAPSHOT and incrementing test cases dependency. 2022-11-06 12:50:41 +00:00
markiantorno cc634aecd5 Release: v5.6.76
## Validator Changes

* Add support for R4B to validator (parts were missing)
* Fix bugs in Logical Model snapshot generation and validation (both instances and logical models themselves)
* Check min/max value for decimal values

## Other code changes

* Fix broken links rendering questionnaires
* Fix issue with converting ActivityDefinition.kind between R5 and R4/R4B/R3 (+ update R5 code)
* Fixes to terminology cache management for test cases
* Process relative links in markdown in code descriptions when rendering value sets
* Fix issue with contained resource not always rendering consistently
* Fix bug where Element Model paths are not populated after preforming a transform
* Fix NPE rendering invalid bundles
* refactor Paramters.getParameter helper methods
* Rendering improvements for logical models
***NO_CI***
2022-11-06 12:33:46 +00:00
Grahame Grieve d3d1b68e7c set up release 2022-11-06 22:59:52 +11:00
Grahame Grieve 27511f40dd Add support for json-primitive-choice 2022-10-29 09:11:09 +11:00
markiantorno f0c53bd7a9 Updating version to: 5.6.76-SNAPSHOT and incrementing test cases dependency. 2022-10-28 11:57:13 +00:00
markiantorno a285132f5b Release: v5.6.75
## Validator Changes

* Fix problem determining implicit code system when code system only known to tx.fhir.org

## Other code changes

* Fix bugs generating CDSHooks snapshots
* Fix for NPE rendering Patient Photo
* Fix problem generating snapshots for specializations where inherited types have properties
* Work on i18n framework
***NO_CI***
2022-10-28 11:38:37 +00:00
Grahame Grieve a3281ea69b set up release 2022-10-28 22:01:54 +11:00
Grahame Grieve b187d289b6 fixes for plural messages for i18n 2022-10-26 14:30:25 +11:00
markiantorno cf111ac919 Updating version to: 5.6.75-SNAPSHOT and incrementing test cases dependency. 2022-10-25 09:35:23 +00:00
markiantorno 325fd0736d Release: v5.6.74
## Validator Changes

* Improve error message for extensions without values

## Other code changes

* Add support for Requirements Resource (rendering + caching)
* Tidy up support for ActorDefinition
* Generate better summary for references
* Clean up bug checking data types in ContextUtilities
* Remove Validator dependency on GSON
* Upgrade validator to produce PSVI  for tools to make use of
***NO_CI***
2022-10-25 09:13:57 +00:00
Grahame Grieve 217596ba3f set up release 2022-10-25 19:43:42 +11:00
markiantorno 308ca865e3 Updating version to: 5.6.74-SNAPSHOT and incrementing test cases dependency. 2022-10-21 07:25:34 +00:00
markiantorno 60022888b1 Release: v5.6.73
## Validator Changes

* Further support for validating CDSHooks content

## Other code changes

* Render period on Identifiers
* Render Tooling IG extensions in Profile table
* Fix NPE building CCDA IG
***NO_CI***
2022-10-21 06:47:50 +00:00
Grahame Grieve 050373ca2c set up release 2022-10-21 17:14:55 +11:00
markiantorno d0b4a1c247 Updating version to: 5.6.73-SNAPSHOT and incrementing test cases dependency. 2022-10-20 07:11:05 +00:00
markiantorno 4aeac63325 Release: v5.6.72
## Validator Changes

* Improved Errors for bad resource ids
* R5 ballot: Hack around discovered issues in the ballot
* Enforce value set & code system versioning when validating codes
* Enable bulk -snapshot and -convert on multiple/wildcard -source
* Fix bug revalidating profiled abstract types

## Other code changes

* Rework validator test cases to not have inter-test dependencies (+ fix up to allow contexts to be cloned)
* add First draft of xliff production
* Add ActorDefinition conversions R5 -> R4, R4B, R3
* Add support for validating logical model json files (not surfaced in CLI yet)
* Updates for changes to extension URLs in Tools IG
* Fix map rendering in value sets
* Fix broken link in R4 DeviceUseStatement
***NO_CI***
2022-10-20 06:47:38 +00:00
Mark Iantorno 318de2991e Updating test case dependency to v1.1.118
***NO_CI***
2022-10-20 06:05:07 +00:00
Grahame Grieve 77dc011551 upgrade test dependency 2022-10-20 11:41:09 +11:00
Grahame Grieve a6e31d36d3 value set validation version fixes, support for ActorDefinition, support for validating binaries by Logical Models, Language works starts, 2022-10-18 21:19:51 +11:00
markiantorno 82e659c8cc Updating version to: 5.6.72-SNAPSHOT and incrementing test cases dependency. 2022-10-14 21:51:04 +00:00
markiantorno 64884ac668 Release: v5.6.71
## Validator Changes

* Fix typos in error messages

## Other code changes

* Fix NPE in xig generation
* Fix bug in validator test framework (packages not being loaded properly)
* Remove references to terminology files no longer found in source specification
* Package generation enhancements for R4/R4B
* Support for CDS Hooks validation (not surfaced outside test cases yet)
***NO_CI***
2022-10-14 21:19:03 +00:00
Grahame Grieve 995ba4f33d set up release 2022-10-15 07:09:21 +11:00
markiantorno 7bf348055a Updating version to: 5.6.71-SNAPSHOT and incrementing test cases dependency. 2022-10-11 01:11:51 +00:00
markiantorno 2fd44c4203 Release: v5.6.70
## Validator Changes

* no changes

## Other code changes

* Fix for logical model issues for cds-hooks logical models
***NO_CI***
2022-10-11 00:50:57 +00:00
Grahame Grieve e1657c66b0 refactor IWorkerContext 2022-10-07 21:50:59 +11:00
markiantorno 9a39f4570c Updating version to: 5.6.70-SNAPSHOT and incrementing test cases dependency. 2022-10-06 23:36:56 +00:00
markiantorno bdd99a48a7 Release: v5.6.69
## Validator Changes

* Fix R5 error around cnl-1
* Add markdown validation
* add support for http://hl7.org/fhir/StructureDefinition/structuredefinition-dependencies
* fix bugs in FHIRPath handling of polymorphism
* fix validation of Coding when system is unknown (align with CodeableConcept handling)
* Fix bug where extranous text in XML was reported in the wrong location

## Other code changes

* Fix links in bundle rendering
* Improvements to rendering for IG publisher (additional bindings)
* Bump jackson-databind dependency
* fix bugs in graphql generation
* populate StructureMap xhtml when loading from mapping language
* align markdown processing with FHIR-38714
***NO_CI***
2022-10-06 23:17:29 +00:00
Grahame Grieve 56e8774c8f Fix problem with R4B FHIRPath tests 2022-10-07 09:20:34 +11:00
Grahame Grieve e5466372a3 set up release 2022-10-07 08:40:14 +11:00
Grahame Grieve 93ec88ee24 fix up test case dependency 2022-10-04 15:20:21 +11:00
markiantorno fa8db082c7 Updating version to: 5.6.69-SNAPSHOT and incrementing test cases dependency. 2022-09-30 20:09:37 +00:00
markiantorno ecc3506457 Release: v5.6.68
## Validator Changes

* Warning in Validator CLI when character encoding is not UTF-8
* Don't validate contained resources against Shareable* profiles, and also check ShareableMeasure

## Other code changes

* Remove CapabilityStatement2 from canonical resources
***NO_CI***
2022-09-30 19:52:48 +00:00
markiantorno 8893e0c0bc Updating version to: 5.6.68-SNAPSHOT and incrementing test cases dependency. 2022-09-27 15:09:27 +00:00
markiantorno 02435a9889 Release: v5.6.67
## Validator Changes

* Work around R4 issue with http://www.rfc-editor.org/bcp/bcp13.txt value set (should be http://hl7.org/fhir/ValueSet/mimetypes)
* Minor improvements to error messages

## Other code changes

n/a
***NO_CI***
2022-09-27 14:33:05 +00:00
Grahame Grieve a1d97b6ed4 fix test dependency 2022-09-27 08:46:49 -04:00
markiantorno 9d308db001 Updating version to: 5.6.67-SNAPSHOT and incrementing test cases dependency. 2022-09-23 18:40:26 +00:00
markiantorno 303853b7a1 Release: v5.6.66
## Validator Changes

* fix error with code system validation messages

## Other code changes

* Enhanced testing for character encoding issues
* XIG publisher improvements
***NO_CI***
2022-09-23 18:20:37 +00:00
Grahame Grieve d670ac9e4c set up release 2022-09-23 12:52:17 -04:00
markiantorno e29b3130db Updating version to: 5.6.66-SNAPSHOT and incrementing test cases dependency. 2022-09-20 16:29:09 +00:00
markiantorno fce1d1f1fc Release: v5.6.65
## Validator Changes

* Validator support for -forPublication parameter

## Other code changes

* Improved ConceptMap rendering
* Internal reorganization of extensions
* Fix NPE rendering terminology resources
* Fix bad HTML rendering SearchParameter
* Allow rendering additional information in a comparison
* bug fixes from loading all published packages ever
***NO_CI***
2022-09-20 16:11:15 +00:00
Grahame Grieve 88d6ed6b93 update tests dependency 2022-09-20 06:50:40 -04:00
Grahame Grieve 72b3d2f6d1 escape bare html entities 2022-09-20 04:52:20 -04:00
markiantorno 45a4ad77ad Updating version to: 5.6.65-SNAPSHOT and incrementing test cases dependency. 2022-09-17 14:49:41 +00:00
markiantorno 7cce3ef810 Release: v5.6.64
## Validator Changes

* Support for R5 terminology

## Other code changes

* fix error with R5 IG constraint
* fix error with double escaping rendering code system markdown
* Suppress display when generating narrative for code systems if display matches code
* Fix bug in RDF generation in R4B
* fix bug in html parser - misses end of comments when end is --->
***NO_CI***
2022-09-17 14:17:42 +00:00
Grahame Grieve 2045b8eee6 update tests again 2022-09-17 09:17:11 -04:00
Grahame Grieve 15af005fbc update test cases 2022-09-17 07:59:15 -04:00
Grahame Grieve 0338899eef update tests 2022-09-17 06:23:44 -04:00
Grahame Grieve 53a6036d52 set up release 2022-09-17 01:02:27 -04:00
markiantorno 09125cbaa4 Updating version to: 5.6.64-SNAPSHOT and incrementing test cases dependency. 2022-09-12 16:58:38 +00:00
markiantorno 0e2ad40b05 Release: v5.6.63
## Validator Changes

* no changes

## Other code changes

* Fix NPE ValueSetRenderer
* More fixes in StructureDefinition validation type characteristic
* Fix typo in ImplementationGuideDefinitionParameterComponent `Value`
***NO_CI***
2022-09-12 16:09:27 +00:00
markiantorno 6169f92cb1 Updating version to: 5.6.63-SNAPSHOT and incrementing test cases dependency. 2022-09-10 06:33:43 +00:00
markiantorno 5286167c02 Release: v5.6.62
## Validator Changes

* More fixing for Type Characteristics

## Other code changes

* Fix rendering of concept map code references
* Fix version conversion problem for MessageHeader.event
***NO_CI***
2022-09-10 06:14:00 +00:00
markiantorno 31238146a0 Updating version to: 5.6.62-SNAPSHOT and incrementing test cases dependency. 2022-09-09 22:13:28 +00:00
markiantorno 9b9c12c97a Release: v5.6.61
## Validator Changes

* no changes

## Other code changes

* Improved HTML compliance (img.alt)
* Improved example generation
* Improved handling of illegal parameters in ImplementationGuideDefinition
***NO_CI***
2022-09-09 21:56:43 +00:00
markiantorno fadb727e87 Updating version to: 5.6.61-SNAPSHOT and incrementing test cases dependency. 2022-09-08 15:20:07 +00:00
markiantorno ca313fa6fe Release: v5.6.60
## Validator Changes

* no changes

## Other code changes

* Rendering improvements for Patient and extension summary
***NO_CI***
2022-09-08 15:03:24 +00:00
dotasek 7608dc9bf6
Bump test cases 2022-09-08 10:19:45 -04:00
dotasek 6e80637185
Change message when extension is in modifierExtension field (#917)
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-09-07 16:56:19 -04:00
markiantorno 9f70b2b541 Updating version to: 5.6.60-SNAPSHOT and incrementing test cases dependency. 2022-09-07 13:29:55 +00:00
markiantorno df2e964389 Release: v5.6.59
## Validator Changes

* More fixes to type characteristics
* Validator would hang on some specific xml inputs - no more

## Other code changes

* General: This release contains java code for the as yet unreleased R5 ballot (it's a precondition for releasing it)
* Snapshot Generator handle bindings on CodeableReferences
* Renderer: Don't always render OperationDefinition header
***NO_CI***
2022-09-07 13:12:42 +00:00
Grahame Grieve c9c60d32ba set up release 2022-09-07 22:44:13 +10:00
Grahame Grieve 6cf6d139c4 fix up for r5 tests 2022-09-07 08:12:20 +10:00
Grahame Grieve bc77c2d031 Merge remote-tracking branch 'origin/master' 2022-09-07 06:02:44 +10:00
Grahame Grieve 0051e16bce upgrade test case dependency 2022-09-07 06:02:36 +10:00
markiantorno df2a768778 Updating version to: 5.6.59-SNAPSHOT and incrementing test cases dependency. 2022-09-04 00:09:47 +00:00
markiantorno 719f28dcd2 Release: v5.6.58
## Validator Changes

* Allow binding as a type characteristic for Extension

## Other code changes

* OID support refactoring
* Remove Contributor Datatype from R5
* R5 Build efficiency fixes
***NO_CI***
2022-09-03 23:48:53 +00:00
markiantorno 6f73511fe7 Updating version to: 5.6.58-SNAPSHOT and incrementing test cases dependency. 2022-09-01 13:44:59 +00:00
markiantorno 8a38b36855 Release: v5.6.57
## Validator Changes

* fix erroneous type characteristics error in StructureDefinition.differentials

## Other code changes

* ValuesetExpansion: Pay attention to inactive property, and activeOnly parameter
* fix broken paths rendering extensions
* Process markdown in code definitions when rendering ValueSets
* Fix duplicate ids in generated questionnaires
* Add types to wildcard list
***NO_CI***
2022-09-01 13:27:25 +00:00
markiantorno 4b8f8e3d2b Updating version to: 5.6.57-SNAPSHOT and incrementing test cases dependency. 2022-08-26 21:14:29 +00:00
markiantorno 51199251e8 Release: v5.6.56
## Validator Changes

* Improve support for example code systems in example mode

## Other code changes

* Render Comments as span titles in ProfileDrivenRenderer
* Fix type analysis in FHIRPath for abstract types
* Terminology utilitty improvements for fhir-types code system
* Lighten invariant background colour
* Fixes to DateTimeType for setFieldValue() method
***NO_CI***
2022-08-26 20:57:04 +00:00
Grahame Grieve 813535454c new release 2022-08-27 05:41:58 +10:00
markiantorno 540209b68f Updating version to: 5.6.56-SNAPSHOT and incrementing test cases dependency. 2022-08-25 17:05:11 +00:00
markiantorno 5112fe18ca Release: v5.6.55
## Validator Changes

* no changes

## Other code changes

* Return lists for FHIRPath constants in r4
* FHIR-25206 handle deprecated concepts properly when expanding value sets
* Fix SHEX generation issue
* Fix ConceptMap rendering column title
* Fix problem rendering ConceptMaps in value sets
* Fix NPE issue rendering resources without ids
* Improvements to SearchParameterRenderer
* Add Reference.resource to output of copy()
* Migration of r5 changes to r4b
* Bundle rendering improvements
* Fix loading canonical resources so that duplicates with different versions is OK
* Fix generation of profiles on Resource.id
***NO_CI***
2022-08-25 16:46:36 +00:00
dotasek 585c552b99
Fix ClassFormatException caused by JurisdictionUtilities (#898)
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-08-19 11:49:33 -04:00
Grahame Grieve e2d1cbfffa msic commit 2022-08-09 20:19:39 +10:00
markiantorno 8051f476a9 Updating version to: 5.6.55-SNAPSHOT and incrementing test cases dependency. 2022-08-03 15:01:07 +00:00
markiantorno 24dbe8b984 Release: v5.6.54
## Validator Changes

* Fix for errors in FHIRPath evaluation (see https://chat.fhir.org/#narrow/stream/179266-fhirpath/topic/String.20functions)

## Other code changes

* R4B BackboneType fixes
* Add R4B to R5 interconversion code
* Improvements to Rendering Documents
* Add uuid to primitive types list
***NO_CI***
2022-08-03 14:28:56 +00:00
Grahame Grieve d562ee0ffa new release 2022-07-29 17:59:06 +10:00
markiantorno 8978130451 Updating version to: 5.6.54-SNAPSHOT and incrementing test cases dependency. 2022-07-25 22:10:34 +00:00
markiantorno ec87c3a0b4 Release: v5.6.53
## Validator Changes

* Add support for OID 1.3.160 (very short OIDs are special)
* Fix evaluation of ValueSets that have only one value set import

## Other code changes

* Rework precision checking in datetime
* Update version conversion to not drop modifierExtensions
* Fix DocumentRendering to generate Composition Narrative if not present
* Restore Search Parameters (missing due to R5 draft generation issues)
* Don't access getBinaries directly in XVerExtensionManager

***NO_CI***
2022-07-25 21:49:05 +00:00
markiantorno fa0597f864 Updating version to: 5.6.53-SNAPSHOT and incrementing test cases dependency. 2022-07-22 06:10:23 +00:00
markiantorno aa6094c451 Release: v5.6.52
## Validator Changes

* Fix issue with startsWith in FHIRPath engine
* Fix bugs validating references (some references not resolved)
* Fix minor issue supporting 4.3.0 (R4B)
* fix bug loading R5 extensions

## Other code changes

* Fix NPE rendering bundles
* R5 Changes to ConceptMap
* Fix bug rendering extensions
* Fix bug accessing polymorphic fields when rendering
* Fix bug around lazy loading packages when validating references
* Add ability to suppress serialising ids when serialising element models
***NO_CI***
2022-07-22 05:50:56 +00:00
dotasek 14494d23b9
Use property to set apache poi version (#861)
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-07-18 10:43:51 -04:00
markiantorno bb13edfdc0 Updating version to: 5.6.52-SNAPSHOT and incrementing test cases dependency. 2022-07-18 10:41:30 +00:00
markiantorno 078ca1e13a Release: v5.6.51
## Validator Changes

* no changes

## Other code changes

* Update R5 for revised ConceptMap in R5 cibuild, and release new core library for R5 build process
***NO_CI***
2022-07-18 10:23:13 +00:00
Grahame Grieve 023aea34fb R4B and R5 extension changes 2022-06-28 15:39:15 +03:00
markiantorno 982ce5f58f Updating version to: 5.6.51-SNAPSHOT and incrementing test cases dependency. 2022-06-24 18:48:18 +00:00
markiantorno 4a654122fb Release: v5.6.50
## Validator Changes

* Improved logging when discriminator doesn't match doing slicing
* Use correct IPS branch when validating
* Load R5 extensions when validating (draft)
* Make it possible to run tests cases directly from validator (see command line help)

## Other code changes

* Regenerate R4B code for final R4B release
* Reduce text logging when running tests
* Minor test case fixes
* Fix fetching package by canonical to use pkgcanonical instead of canonical
* Fix broken link rendering code system references
* improvements to profile validation
***NO_CI***
2022-06-24 18:32:05 +00:00
dotasek ae8b21014a Bump version to 5.6.50-SNAPSHOT 2022-06-24 11:29:30 -04:00
markiantorno 891aaf4a20 Release: v5.6.49
## Validator Changes

* Improved logging when discriminator doesn't match doing slicing
* Use correct IPS branch when validating
* Load R5 extensions when validating (draft)
* Make it possible to run tests cases directly from validator (see command line help)

## Other code changes

* Regenerate R4B code for final R4B release
* Reduce text logging when running tests
* Minor test case fixes
* Fix fetching package by canonical to use pkgcanonical instead of canonical
* Fix broken link rendering code system references
* improvements to profile validation
***NO_CI***
2022-06-24 12:41:29 +00:00
Grahame Grieve 2e49c97be5 Prepare release 2022-06-24 14:02:17 +02:00
dotasek 1f3a79fe53 Update comments in Jacoco-maven-plugin re: autogenerated code 2022-06-15 09:38:03 -04:00
dotasek 1fee28fe84
Feature - run JUnit tests from validator_cli (#835)
* WIP add initial test running code

* Importing test modules fix breaking tests 1

* Clean up pom dependencies, move execution before context load

* Re-org and document cli pom

* Set more dependencies to compile. Print entries in classpath

* Try running via internal Executors

* Clearer class names + provide clear output

* Clean up test summarys and output + update class regex to junit default

* Refactor to avoid having to extend class

* Trim down dependency additions in pom + javadoc

* Add the rest of the modules to TestExecutor

* Parse additional params for classname filter and module

* Add experimental JUnit 4 runner in case JUnit 5 hates us.

* Include JUnit4 tests via adapters. Need to refactor for better naming.

* Update LoadIgTests to JUnit 5

* Gentle refactor, print execution time

* Remove unnecessary interface, organize packages

* Remove cached resources (need to fix this)

* Allow setting of txCache globally for tests + fix r5 tests

* Mild refactor of TestExecutor + Reorder test execution

* Add fhirTestCasesDirectory to testConfig + get r4 tests working

* Add dstu2016may and dstu3 tests

* Add dstu2 tests

* Add convertors tests

* Refactor resourceNameForFile + don't copy existing files

* Get all txCache directories centrally and allow all to live in same dir

* Start extracting txCache resources

* Finish extracting txCache resources

* Fix failing GraphQLEngineTest

* Try an mvn install for the pull pipeline

* Clean and refactor

* Test coverage

* Fix GraphQLEngineTests for local jar run

* More refactoring, more tests

* Add bare test for TxCacheResourceExtractor

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-06-14 17:04:00 -04:00
markiantorno 3484b891d5 Updating version to: 5.6.49-SNAPSHOT and incrementing test cases dependency. 2022-06-08 07:01:23 +00:00
markiantorno 17ce4678d4 Release: v5.6.48
## Validator Changes

* Clean up the -extension parameter - make implementation conistent with documentation
* Stop auto-converting parameters to strings for string functions e.g. .length() in the FHIRPath engine
* Add parameter -implicit-fhirpath-string-conversions for old FHIRPath string conversion functionality

## Other code changes

* Fix NPE counting descendents when validating
* Fix bug processing invalid HTTP response
***NO_CI***
2022-06-08 06:41:48 +00:00
Mark Iantorno cd38bdd43a Updating test case dependency to v1.1.101
***NO_CI***
2022-06-08 04:26:16 +00:00
Grahame Grieve b0dfc9f281 fix bug counting children + fix issue with automatic string conversion in FHIRPath + fix bug in HTTP client + fix bug rendering profile comparison 2022-06-08 08:56:46 +10:00
dotasek a435beb29c
Backport ProfileUtilities changes from r5 to r4b (#827)
Plus update fhir-test-cases version

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-06-02 09:30:43 -04:00
markiantorno 2c8db93787 Updating version to: 5.6.48-SNAPSHOT and incrementing test cases dependency. 2022-05-27 17:24:16 +00:00
markiantorno 567a9b2ce7 Release: v5.6.47
## Validator Changes

* Significant improvement in performance of validation (10-100 fold for simple resources)
* Add output tracker to trask progress of validation (Validate %R against %P..........20..........40..........60..........80.........|)
* Alter per-1 to handle different precision on start/end
* Add support for a -jurisdiction parameter, preparing for jurisdictionally specific constraints in profiles
* Fix bug in snapshot generation where type slices on a mandatory element were all marked as mandatory
* Add warnings when potential matches are found when performing reference resolution in bundles

## Other code changes

* extend FHIRPath to support lowBoundary(), highBoundary() and precision()
* Fix for inefficiency in StructureMap engine
* Update version of PubPack used by the IGPublisher
* Handle scope on TestScript R4 <-> r5 conversion
* Fix bug converting extension context = Resource (R4 <-> R5 conversion)
* Update VSAC importer for changes to VSAC FHIR authorization
* Fix broken links in profile comparison due to cross version issues
***NO_CI***
2022-05-27 16:52:13 +00:00
markiantorno 3ab828c381 Updating version to: 5.6.47-SNAPSHOT and incrementing test cases dependency. 2022-05-12 10:35:09 +00:00
markiantorno eca2fa5a5c Release: v5.6.46
## Validator Changes

* Trim unknown resource types when pre-adopting cross version extensions with type=Reference

## Other code changes

* Package Client: Get Packages by Dependency
* Snapshot Generator (R4b/R5): Fix generation of complex extension snapshot + improve rendering
* New tests for StructureMap execution
***NO_CI***
2022-05-12 10:18:11 +00:00
Grahame Grieve 7d667880f1 set up release 2022-05-12 17:55:36 +10:00
Grahame Grieve be631a5130 Trim unknown resource types when pre-adopting extensions of type Reference from future versions 2022-05-11 02:14:08 +10:00