Commit Graph

700 Commits

Author SHA1 Message Date
Grahame Grieve 53c5211033 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2021-10-29 09:19:11 +11:00
Grahame Grieve 5b9736dbff add explicit control over the User-Agent header, and make sure headers flow through properly to all calls 2021-10-23 05:56:36 +11:00
markiantorno 6f32a85d66 Updating version to: 5.5.9-SNAPSHOT and incrementing test cases dependency. 2021-10-22 01:16:56 +00:00
markiantorno 7254337c5b Release: v5.5.8
* add -output-style parameter
* handle naming system URLs when resolving URLs
* fix profile comparison
* fix tests dependency
* ping build
* more validation for canonical URLs
* fix terminology version management and caching + better error message… …
* Merge pull request #620 from EricLemieux/fix-618 …
* fix json issue, and add tests for it
* Fix Issue 618 | NPE bundle validation …
* Removing pinentry option for gpg as it breaks in ubuntu 20.04
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2021-10-22 00:52:33 +00:00
markiantorno 28bdc66c64 Updating version to: 5.5.8-SNAPSHOT and incrementing test cases dependency. 2021-10-10 23:07:21 +00:00
markiantorno f450904bdb Release: v5.5.7
* NPE fixes
* Smart Health Cards support in validator
* Fix bug generating spreadsheets due to sheet name length limitations
* Implement descendent-of filter
* more NPE fixes
* add Element.removeChild
* fix issue generation snapshot and content reference, and work around …
* improve SHC validation error
* fix for NPE generating ConceptMap spreadsheet
* fix crash in IG publisher rendering illegal content
* Improve slicing error messages
* more improving error message resolving slicing
* add missing code + track prohibited / required elements (improve rend…
* fix for broken links in R4B IGs
* fix bug related to logger in FHIRToolingClient
* fix bug related to logger in context
* enable detection of whether tx server knows about value set and bette…
* make likely source URL visible outside ProfileUtilities
* fix renderers - don't make nonvalid URLs into html links + fix NPE +
* fix bug with sheetnames generating spreadsheets
* supper branches in current version of packages
* report slicing information automatically where slicing is based on pr…
* fix misleading validation message + add -ips parameter for validator
* hint not warning when it's an example questionnaire
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2021-10-10 22:40:40 +00:00
Grahame Grieve 237897965b
Gg 202110 misc validation (#617)
* NPE fixes

* Smart Health Cards support in validator

* Fix bug generating spreadsheets due to sheet name length limitations

* Implement descendent-of filter

* more NPE fixes

* add Element.removeChild

* fix issue generation snapshot and content reference, and work around old erroneous binding description in R4

* improve SHC validation error

* fix for NPE generating ConceptMap spreadsheet

* fix crash in IG publisher rendering illegal content

* Improve slicing error messages

* more improving error message resolving slicing

* add missing code + track prohibited / required elements (improve rendering of IGs)

* fix for broken links in R4B IGs

* fix bug related to logger in FHIRToolingClient

* fix bug related to logger in context

* enable detection of whether tx server knows about value set and better track returned errors from tx server

* make likely source URL visible outside ProfileUtilities

* fix renderers - don't make nonvalid URLs into html links + fix NPE +

* fix bug with sheetnames generating spreadsheets

* supper branches in current version of packages

* report slicing information automatically where slicing is based on profile + fix shc support + support codesystem-properties-mode + fix value set validation on profiles + fix wrong entry point on vaildating contained resources with profiles

* fix misleading validation message + add -ips parameter for validator

* hint not warning when it's an example questionnaire
2021-10-10 17:37:02 -04:00
markiantorno df724155e0 Updating version to: 5.5.7-SNAPSHOT and incrementing test cases dependency. 2021-10-09 22:05:18 +00:00
markiantorno 04ceca78b1 Release: v5.5.6
* incrementing test case dependency
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2021-10-09 21:34:22 +00:00
markiantorno c33a3b5e82 forgot to change module versions 2021-10-08 13:31:53 -04:00
markiantorno f0997bc0c0 Updating version to: 5.5.5-SNAPSHOT and incrementing test cases dependency. 2021-09-29 17:51:23 +00:00
markiantorno 6aaf495c85 Release: v5.5.4
* https://github.com/hapifhir/org.hl7.fhir.core/issues/499
* https://github.com/hapifhir/org.hl7.fhir.core/issues/602
* https://github.com/hapifhir/org.hl7.fhir.core/issues/611
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2021-09-29 17:22:54 +00:00
markiantorno 3db881a93b Updating version to: 5.5.4-SNAPSHOT and incrementing test cases dependency. 2021-09-10 03:27:13 +00:00
markiantorno 6b479d16cd Release: v5.5.3
* Adding option to modify headers for http tx requests
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2021-09-10 02:57:44 +00:00
markiantorno 9b37e0fdc2 bumping version because github deploy failed 2021-09-09 22:38:51 -04:00
markiantorno f72d115f0f Release: v5.5.2
* Adding option to modify headers for http tx requests
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2021-09-10 01:57:53 +00:00
Mark Iantorno e5a05f5562
Terminology client headers (#599)
* wip

* adding tests for headers in client

* fix

* r4 updated httpclient

* updating http client code for r4 and dstu3

* dunno why this didn't get added before
2021-09-09 16:32:19 -04:00
markiantorno 19d255636c Updating version to: 5.5.2-SNAPSHOT and incrementing test cases dependency. 2021-09-02 15:37:47 +00:00
markiantorno 23688f54f6 Release: v5.5.1
* The release failed and we need to do a quick release to fix versioning.
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2021-09-02 15:09:38 +00:00
markiantorno b36f54eb6b bumping version to fix release issues 2021-09-02 08:56:49 -04:00
markiantorno ae571d4bfb Updating version to: 1.1.68-SNAPSHOT and incrementing test cases dependency. 2021-09-02 03:52:18 +00:00
markiantorno 2bd2e3b864 Release: v1.1.67
Validator
* fix NPE bug logging terminology server calls
* fix NPE bug validating logical models
* fix problem with Type Name when validating against Logical Models
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2021-09-02 03:26:20 +00:00
Grahame Grieve bcee0603e5 fix version 2021-09-02 12:20:48 +10:00
markiantorno f58cdec1c0 Updating version to: 5.4.13-SNAPSHOT and incrementing test cases dependency. 2021-09-01 04:29:12 +00:00
markiantorno 175eeeca2d Release: v5.4.12
Validator:

* Hack around erroneous R3 Invariant (ref-1)
* Add support for generating terminology spreadsheets from the command line validator
* Validate Resource.id and Element.id properly

Other Code Changes:
* Change the FHIRPath interface IEvaluationContext.resolveConstant to return List<Base> not Base (BREAKING CHANGE!)
* Binary Resource Renderer
* Spreadsheet Generation for terminology resources (org.hl7.fhir.r5.renderers.spreadsheets package)
* Fix various NPEs discovered by users
* Fix rendering of value sets that have no definition
* Mark generated narrative with a flag in user data
* return system for display when IWorkerContext.validateCode is called
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2021-09-01 03:59:20 +00:00
markiantorno 99e85360d7 Updating version to: 5.4.12-SNAPSHOT and incrementing test cases dependency. 2021-08-25 23:38:16 +00:00
markiantorno 1b4c675c19 Release: v5.4.11
* Differential element fields minValue/maxValue are now correctly treated in the snapshot generation process
* Conversion context added to conversions process
* Users can now define custom behavior for CodeSystems, Extensions, BundleEntries, and Types by extending BaseAdvisor.
* Resource Conversions are now thread-safe, each using their own instance of the conversion context that is unique
* ConversionFactory classes are statically accessed, to minimize changes downstream
* I need to add more tests, there were very few to begin with, and it's my next task
* All conversion libraries and no play makes Mark a dull boy
* Exposed showMessagesFromReferences on the command line interface to support reporting validation errors on referenced types (particularly useful when validating messages & documents)
* https://github.com/hapifhir/org.hl7.fhir.core/issues/564
* https://github.com/hapifhir/org.hl7.fhir.core/issues/513
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2021-08-25 23:10:46 +00:00
Tadgh 5ca6d19c69
Replace proprietary notnull with javax.annotation.Nonnull (#584)
* Replace proprietary notnull with javax.annotation.Nonnull

* wip

Co-authored-by: markiantorno <markiantorno@gmail.com>
2021-08-25 08:39:44 -04:00
Grahame Grieve 4ba9193a5e fix for #575 NPE in rendering Patient 2021-08-25 06:50:58 +10:00
markiantorno 9a66c87a05 Updating version to: 5.4.11-SNAPSHOT and incrementing test cases dependency. 2021-08-19 02:59:51 +00:00
markiantorno 0853126597 Release: v5.4.10
* Conversion context added to conversions process
* Users can now define custom behavior for CodeSystems, Extensions, BundleEntries, and Types by extending BaseAdvisor.
* Resource Conversions are now thread-safe, each using their own instance of the conversion context that is unique
* ConversionFactory classes are statically accessed, to minimize changes downstream
* I need to add more tests, there were very few to begin with, and it's my next task
* All conversion libraries and no play makes Mark a dull boy
***NO_CI***
2021-08-19 02:26:11 +00:00
Mark Iantorno 72e88cb12f
Adding proper null checks for convertor factories. (#579)
* wip

* wip

* sdjkhfakjsdhllkjsdhfsdkh
2021-08-18 21:43:39 -04:00
Mark Iantorno 58c0e216e8
Conversion library overhaul (#568)
* wip

* adding pathing to 40_50 conversion

* wip

* 30_50 and 40_50 updated to factory

* 30_40 factory

* 14_50

* 14_40

* 14_30, 10_50

* 10_40

* 10_30

* forcing non-null on VersionConvertors

* *trying* to clean up advisor code, switching from jetbrains NotNull to javax Nonnull annotation

* all calls within convertor classes should use INSTANCE access, not factory to maintain thread safety

* adding README for conversion library

* spacing

* threaded test removal

* release notes

* Update RELEASE_NOTES.md

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>

* Update RELEASE_NOTES.md

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>

* Update org.hl7.fhir.convertors/CONVERTORS.md

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>

* Update org.hl7.fhir.convertors/CONVERTORS.md

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>

* Update org.hl7.fhir.convertors/CONVERTORS.md

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
2021-08-06 19:28:24 -04:00
markiantorno 99fcac64ac Updating version to: 5.4.10-SNAPSHOT and incrementing test cases dependency. 2021-07-15 16:29:01 +00:00
markiantorno 296ab05f10 Release: v5.4.9
* Big refactoring of conversion code. First big step in being able to add conversion context.
* https://github.com/HL7/fhir-ig-publisher/issues/295
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2021-07-15 15:57:12 +00:00
Mark Iantorno aab5bd4a0f
Convertor refactor ii (#556)
* 10_30

* 10_40

* 10_50

* 14_30

* 14_40

* 14_50

* 30_40

* 40_50

* cleaningup
2021-07-07 22:41:14 -04:00
markiantorno c53cc54b96 Updating version to: 5.4.9-SNAPSHOT and incrementing test cases dependency. 2021-07-06 19:01:20 +00:00
markiantorno 1330ad7cf8 Release: v5.4.8
Fixed issue where validator fails to detect invariant issue when there are multiple profiles that use the same invariant on the same element. Also addressed issue revealed by the fix where the context resource wasn't being set properly when checking certain invariants (identified by one of the existing test cases).
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2021-07-06 18:31:40 +00:00
markiantorno 1d7e8bf63d Updating version to: 5.4.8-SNAPSHOT and incrementing test cases dependency. 2021-07-05 17:01:20 +00:00
markiantorno c1adf78ed9 Release: v5.4.7
* Releasing to bring latest release up to Grahame's latest changes.
***NO_CI***
2021-07-05 16:01:31 +00:00
markiantorno 887365e778 Updating version to: 5.4.7-SNAPSHOT and incrementing test cases dependency. 2021-06-24 19:44:46 +00:00
markiantorno aa0b7bc056 Release: v5.4.6
Validator:
* Fix problem importing x-version extensions with multiple targets
* fix bug validating profiles on bundle.entry.resource
* Fix loading issues with German translations (Unicode encoding problem)

Version Conversion:

* Round trip old questionnaires properly with R5 (item.type)

Other code changes:

* Fix up questionnaire rendering for old versions
* Add support for using https:// references to HL7 website
* Add support for using https:// references to HL7 website
* Add support for R4B to context
* update pubpack to v0.0.9
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2021-06-24 19:18:37 +00:00
Grahame Grieve d07da31206
Merge pull request #543 from ItayGoren/abatament-condition
fix condition abatament bool
2021-06-25 04:30:42 +10:00
Grahame Grieve 8aa77b97cd Fix up Questionnaire rendering/conversion problem for R5 2021-06-24 21:44:13 +10:00
Itay Goren 73925c451b fix condition abatament bool 2021-06-23 12:59:19 +03:00
Mark Iantorno 87066f1c4c
Static method convertor (#541)
* pulled it all apart

* pulled apart all the 40_50 components for poc

* wip
2021-06-22 20:29:48 -04:00
markiantorno e68b5857b1 Updating version to: 5.4.6-SNAPSHOT and incrementing test cases dependency. 2021-06-17 22:28:48 +00:00
markiantorno 02e761c3dc Release: v5.4.5
* Fix validation bug on Canonical references
***NO_CI***
2021-06-17 21:59:19 +00:00
markiantorno dd49561bd7 Updating version to: 5.4.5-SNAPSHOT and incrementing test cases dependency. 2021-06-17 09:06:05 +00:00
markiantorno 952db0248a Release: v5.4.4
Validator:

* Add support for $index on aggregators in FHIRPath
* don't fail with an exception if an unknown resource type appears in contained resource
* improved validation for some value sets that are based on unknown code systems
* add the -verbose parameter, and add additional verbose messages
* CDA: Fix erroneous type validation on CDA templates

Conversion code:

* Ignoring abatementBoolean when converting from dstu2 to r4

Snapshot generator:

* CDA: Suppress erroneous "Expansion" text appearing in view
* CDA: Don't delete binding information in snapshot for CDA bindable data types

Other code changes:

* Fix rendering of slices so type on slicer is not hidden
* Fix rendering for most resources - remove empty tables (e.g. text element, that shouldn't render)
* Fix NPE rendering code systems with some kinds of properties
* Improve rendering of questionnaires (icons, option sets)
* Rendering: add support for CodeableReference
* Rendering: Support binding mode and XML element information
***NO_CI***
2021-06-17 08:33:35 +00:00