2293 Commits

Author SHA1 Message Date
markiantorno
67329e20ad Release: v5.6.94
## Validator Changes

* no changes

## Other code changes

* Test release
***NO_CI***
2023-02-02 16:34:58 +00:00
Jim Balhoff
d596a6c343 Use leading underscore for properties with objects with modifier extensions. 2023-02-01 19:49:24 -05:00
Jim Balhoff
12bf57886f For resources with a modifierExtension, use a leading underscore for the rdf:type. 2023-02-01 13:05:47 -05:00
markiantorno
e922cc2a97 Updating version to: 5.6.94-SNAPSHOT and incrementing test cases dependency. 2023-02-01 07:27:59 +00:00
markiantorno
4e97bb0d5a Release: v5.6.93
## Validator Changes

* Fix for NPE rendering resources
* Consider CanonicalResource to be a CanonicalResource when validating profile references
* Work around error in R5 sdf-29 invariant

## Other code changes

* XHTML processing: Cater for "." in XML element and attribute names
* Handle R3 encoding of primitive values when validating profiles
* Improve error messaging when validating StructureDefinition
* Temporary Support for MedicationStatement in R5
* Work around for Identifier.use = ? in THO R5 package (old error)
* Rework Package API to allow for authentication on package servers
* Structure mapping now finds source Structure Definition by URI and sets ParserBase logical property appropriately.
* DOn't convert ig-r4 when converting package versions
***NO_CI***
2023-02-01 07:02:20 +00:00
Grahame Grieve
4a79e89f62 Merge remote-tracking branch 'origin/master' 2023-02-01 14:49:19 +11:00
Grahame Grieve
2cc8ff5e23 extension related validation fixes 2023-02-01 14:49:14 +11:00
Neelima Karipineni
61e63b128a
Enhancements to StructureMap transform to support logical models as source and value set lookup (#1092)
* implement resolveValueSet from AHDIS Matchbox

* get SD from map source type, set logical model

* test for getSourceResourceFromStructureMap DefinitionException

* test resolveValueSet

* test transform logical source

* fix formatting
2023-01-31 16:56:02 -05:00
Jim Balhoff
69ce2b45f2 Output lists in examples using RDF lists. Don’t output fhir:index. 2023-01-31 14:11:29 -05:00
Grahame Grieve
7ad4bd62c6 fix for NPE rendering resources 2023-01-31 07:23:12 +11:00
Grahame Grieve
d859e0b4bd Temporary Support for MedicationStatement in R5 (going to be renamed again) 2023-01-31 07:22:33 +11:00
Jim Balhoff
890971d110 Output type triples for value[x] nodes. Use simple property names. 2023-01-27 17:35:36 -05:00
Jim Balhoff
00d1ab3517 Use fhir:v for literal values in examples. 2023-01-22 19:14:49 -05:00
Jim Balhoff
b7576dee79 Don’t output ontology import declaration in examples. 2023-01-22 19:14:08 -05:00
markiantorno
cb441456a8 Updating version to: 5.6.93-SNAPSHOT and incrementing test cases dependency. 2023-01-20 23:14:26 +00:00
markiantorno
dc677cad51 Release: v5.6.92
## Validator Changes

* update FHIRPath implementation for corrections to 'as' (R5 only in validator)
* Critical Security fix: enforce correct paths when unpacking archives (SecurityAdvisory-1082, CVE TBA)

## Other code changes

* Update to latest FHIRPath for older versions
* Add new ElementModel based parser for StructureMaps
* go-publish related changes
* FTP Client upload and logging improvements
* Refactor base64 handling for Android compatibility

## Security Note

The validator unzips archive files to the local file system when
it is scanning zip files it has been asked to validate, and when it is
installing packages. These processes are now resistant to the zip-slip
vulnerability.
***NO_CI***
2023-01-20 22:57:29 +00:00
dotasek
b50aec5912
Advisory fix 1 (#1089)
* Update cache and comparison downloads to use https

* Zip Slip tests and fix

* Zip Slip tests 2 and fix

* Add missing tempDir child in ScannerTest

* Add win format zip test

* Add tests to r4b

* Add tests and fixes for slips in tgz processing

* Update fhir-test-cases version
2023-01-20 16:56:57 -05:00
Grahame Grieve
2c93585bb6 better error message 2023-01-21 07:36:09 +11:00
Grahame Grieve
f8e6371e1f
Merge branch 'master' into gg-202301-sm-errors 2023-01-20 19:44:24 +11:00
Grahame Grieve
b16fc37b02 clean up error handling when parsing structure maps 2023-01-20 04:24:42 +11:00
dotasek
f58b7acfb5
Swaps isBase64 with internal implementation for Android compatibility (#1079)
* Adding animal sniffer to display all issues related to android compatibility.

* Duplicate isBase64 internally

Co-authored-by: Vitor Pamplona <vitor@vitorpamplona.com>
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-01-18 18:40:24 -05:00
Grahame Grieve
7cc01ef7db update new FHIRPath for older versions 2023-01-19 07:57:05 +11:00
Grahame Grieve
26027fa3d6 update FHIRPath implementation for discussion at 84a07a6a92 2023-01-19 06:59:45 +11:00
Grahame Grieve
d7071312ba
Merge pull request #1080 from hapifhir/gg-202301-sm-em-parser
Add ElementModel based StructureMap parser
2023-01-18 20:07:52 +11:00
Grahame Grieve
4f2fd817a3 Merge remote-tracking branch 'origin/master' 2023-01-18 12:33:59 +11:00
Grahame Grieve
c9833f94d3 Add ElementModel based StructureMap parser 2023-01-18 12:32:06 +11:00
markiantorno
4367813a2c Updating version to: 5.6.92-SNAPSHOT and incrementing test cases dependency. 2023-01-17 21:59:38 +00:00
markiantorno
7b22d0355b Release: v5.6.91
## Validator Changes

* Fixed validation of URNs
* Check profiles don't have slicing on roof

## Other code changes

* Fix significant performance issue with profile xls generation
* Fix issue with setProperty dropping extensions in R3 - R5
* Debug logging improvements generating snapshots
* Fix issues with types missing in CDA IGs
* Fix problem converting ActivityDefinition R4(B)/R5
* More work on FTP Client
***NO_CI***
2023-01-17 21:40:28 +00:00
Grahame Grieve
7b99037199 fix BOM in java files 2023-01-17 12:49:14 +11:00
Grahame Grieve
daf5638f3e Fix significant performance issue generating xlsx for multiple profiles 2023-01-17 11:23:39 +11:00
Grahame Grieve
8cb7e40815 Improved Error message if profile root has slicing 2023-01-17 11:23:14 +11:00
Grahame Grieve
01c131b29d see PR 1075 - fix issue with setProperty() ignoring extensions 2023-01-17 11:22:42 +11:00
Grahame Grieve
41abbb21a0 fix debug logging for snapshot generation 2023-01-17 05:36:44 +11:00
Grahame Grieve
abf2e99ab6 Merge remote-tracking branch 'origin/master' 2023-01-16 10:53:57 +11:00
Grahame Grieve
1df68c95a4 Fix rendering when binding strength missing 2023-01-16 10:13:11 +11:00
Grahame Grieve
6c2a488402 fix type convertors to handle null 2023-01-16 10:12:59 +11:00
markiantorno
c52777c462 Updating version to: 5.6.91-SNAPSHOT and incrementing test cases dependency. 2023-01-14 06:35:33 +00:00
markiantorno
ac16aae300 Release: v5.6.90
## Validator Changes

* Better tracking and reporting of snapshot generation issues
* Update FHIRPath implementation to R4 with all corrections and extensions from R5 implemnetation

## Other code changes

* Inclusion of SAXON dependency for processing XSLT
* Error message spacing correction
* Basic FTPClient implementation
* test NPE in markdown processing
* go-publish support
* Start implementing loading structure maps with validation
***NO_CI***
2023-01-14 06:17:06 +00:00
Grahame Grieve
615ed8d63f
Update R4 FHIRPath implementation from R5, and get all tests passing (#1063)
* Update R4 FHIRPath implementation from R5, and get all tests passing

* test NPE in markdown processing

* go-publish support

* Start implementing loading structure maps with validation

* release notes

* more work on FTP

* Fix breaking test.

* Add fhir-test-cases to r4 pom to fix breaking test

Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-01-13 23:08:40 -05:00
Grahame Grieve
a06803d936 Start implementing loading structure maps with validation 2023-01-14 08:45:13 +11:00
Grahame Grieve
90f7214195 test NPE in markdown processing 2023-01-10 11:34:41 +11:00
Grahame Grieve
8902898428 better tracking and reporting of snapshot generation issues 2023-01-09 08:03:24 +11:00
markiantorno
b6cec730b5 Updating version to: 5.6.90-SNAPSHOT and incrementing test cases dependency. 2023-01-06 02:08:34 +00:00
markiantorno
a6745a9016 Release: v5.6.89
## Validator Changes

* Add support for fhir_comments in R2/R2B
* Add validator checking around versions in extension URLs
* Fix bug generating cross-version extensions

## Other code changes

* Fix minor NPEs running IG publisher
* Add new PE module (PEDefinition/PEInstance)
* Add support for liquid filters (resolve FHIRPath conflict)
* Fix up round-tripping of XPath constraints R4/R5
* Refactor R5 ProfileUtilities (and move rendering to rendering package)
* Fix appending text when generating snapshots
***NO_CI***
2023-01-06 01:51:20 +00:00
Grahame Grieve
c828ce9eb7 fix URL TO URI 2023-01-06 10:41:21 +11:00
Grahame Grieve
45cf907204 kindling compile fixes 2023-01-05 08:43:30 +11:00
Jim Balhoff
673e36b989 Merge branch 'master' into rdf-wg-r5-merging 2023-01-04 15:04:48 -05:00
Grahame Grieve
f3fc19a906 refactor profile generation (utils -> renderer) + add new views 2023-01-03 14:54:11 +11:00
Grahame Grieve
b014401dd4 refactor profile rendering (more to StructureDefinitionRenderer) 2023-01-01 11:12:44 +11:00
Grahame Grieve
aacefd6581 Merge remote-tracking branch 'origin/master' 2022-12-31 11:06:47 +11:00