Commit Graph

7585 Commits

Author SHA1 Message Date
Grahame Grieve 9f9e9dfb8a Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-09-06 22:18:06 +08:00
Grahame Grieve 7fc34e509a alter processing of unknown code systems per discussion at ,https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/Don't.20error.20when.20you.20can't.20find.20code.20system and implement unknown-codesystems-cause-errors 2024-09-06 22:18:01 +08:00
Lloyd McKenzie 966798cc2f Missed commits 2024-09-04 22:25:07 -06:00
Grahame Grieve 39d747d736
Merge pull request #1735 from gjergjsheldija/test_language_concurrency_bug
Fix for ConcurrentModificationException for language translation
2024-09-05 04:30:08 +08:00
Grahame Grieve 6165b154e1
Merge branch 'master' into test_language_concurrency_bug 2024-09-05 04:29:58 +08:00
Grahame Grieve 541e903d50
Merge pull request #1734 from hapifhir/2024-09-gg-misc
2024 09 gg misc
2024-09-05 04:29:20 +08:00
Grahame Grieve 4603b3ac3c compile fix 2024-09-04 23:25:28 +08:00
Grahame Grieve 515bead90d compile fix 2024-09-04 21:59:01 +08:00
Gjergj Sheldija 51ad87c715 PR comment 2024-09-04 08:16:03 +02:00
Grahame Grieve 9c74e94e68 test case dependency 2024-09-04 08:59:11 +08:00
Gjergj Sheldija 973ab9e56f possible fix 2024-09-03 15:41:58 +02:00
Grahame Grieve 96485e6175 updates 2024-09-03 21:27:41 +08:00
Grahame Grieve 63ab904401 fix problem where profile rendering had spurious 'slices for' nodes everywhere 2024-09-03 21:27:28 +08:00
Grahame Grieve 7e5014c6d7 Fix problem generating value set spreadsheets 2024-09-03 21:26:53 +08:00
Grahame Grieve 83daa93fbc fix concurrent modification error processing language translations 2024-09-03 21:26:35 +08:00
Grahame Grieve 00f4f0998f Improve message for when elements are out of order 2024-09-03 21:26:17 +08:00
Grahame Grieve 88075e6ac9
Merge pull request #1732 from gjergjsheldija/test_language_concurrency_bug
unit tests to check the concurrency bug
2024-09-03 21:18:29 +08:00
Gjergj Sheldija 8e908da1ab unit tests to check the concurrency bug 2024-09-03 13:50:54 +02:00
dotasek 385b40cd4e
Update staging plugin (#1730) 2024-08-30 13:36:13 -04:00
dotasek c260bece21
Check for null fetcher (#1728) 2024-08-30 09:44:33 -04:00
Lloyd McKenzie 975653e07d Added support for tracking whether elements are ellipsed and for rendering XHTML versions of XML and JSON content with ellipsed elements 2024-08-29 21:17:20 -06:00
dotasek 75fc9a8b57
Update azure maven tasks to version 4 (#1726)
* Update azure maven tasks to version 4

* Increase compiler memory

* Increment compiler version
2024-08-29 11:39:47 -04:00
markiantorno 19c8b17575 Updating version to: 6.3.24-SNAPSHOT and incrementing test cases dependency. 2024-08-28 18:45:30 +00:00
markiantorno 2721ebb8c6 Release: v6.3.23
## Validator Changes

* no changes

## Other code changes

* Set fhir-test-cases to release 1.5.20
***NO_CI***
2024-08-28 17:59:21 +00:00
dotasek 970b5a581b Fix snapshot check to allow for submodules 2024-08-28 12:40:31 -04:00
dotasek 27f14c6d93 Update release notes to force CI run 2024-08-28 11:41:53 -04:00
dotasek 5dc2b11e47 Update test case version to release
***NO_CI***
2024-08-28 11:24:57 -04:00
dotasek 4a0a86c1d3 Release notes
***NO_CI***
2024-08-28 11:22:02 -04:00
dotasek bc974b75f8 Check for SNAPSHOT dependencies before release 2024-08-28 11:20:22 -04:00
markiantorno 1e5cb4da49 Updating version to: 6.3.23-SNAPSHOT and incrementing test cases dependency. 2024-08-27 21:23:55 +00:00
markiantorno 0bdba83faf Release: v6.3.22
## Validator Changes

* no changes

## Other code changes

* BugFix: Restore loadFromFolder method in FilesystemPackageCacheManager
***NO_CI***
2024-08-27 20:30:39 +00:00
dotasek 7b76b29dfe
Release Notes (#1725) 2024-08-27 15:00:43 -04:00
dotasek f783d07c6c Restore deleted method 2024-08-27 14:09:28 -04:00
markiantorno c172df802d Updating version to: 6.3.22-SNAPSHOT and incrementing test cases dependency. 2024-08-27 17:54:17 +00:00
markiantorno c92ee550c0 Release: v6.3.21
## Validator Changes

* Security Fix: Move all instantiation of transformerFactory to XMLUtils and set ACCESS_EXTERNAL flags automatically (slightly improvement to output message, but closes possible attack vector)
* Handle 308 redirects when fetching packages
* Fix NPE in ValueSetValidator
* Fix for NPE in IGLoader
* fix version conversion problem for ConceptMap (4<->5): relationship comment getting lost for noMap entries
* Add check for multiple WG extensions (HL7 context)

## Other code changes

* Suppress spurious logging statement
* Add Australian CDA name prefix & uri to mapping transform code
* Add new messages for tx.fhir.org
* Remove narrative from snapshot tests
* Improve complex extension rendering when rendering by profile
* Rewrite processing of map statements when generating snapshots to fix known bugs
* Updates to Capability Statement rendering (and minor Operation Definition rendering improvement)
* Fix wrong reference to CDA classes for unscoped class names
* fix rendering issue for R4 relationship codes in ConceptMap
* rework decimal lowBoundary() and highBoundary() after discussion on Zulip, and add extensive testing
* Fix existing test case for fixed up boundary handling in FHIRPath
* Add CodeSystem fetching for selected code systems for VSAC import
* Drop to saxon 11.6 for now
* fix issue with json unicode whitespace enscaping
* get Java generator running again (though no code regenerated)
* don't escape unicode whitespace in json files
* Fix NPE in questionnaire renderer
* Hack workaround for R4 issue with ProcessPriority
* Rewrite concurrency management for file system package cache
***NO_CI***
2024-08-27 16:42:13 +00:00
dotasek 9d10622ec7
Update RELEASE_NOTES.md
***NO_CI***
2024-08-27 12:09:07 -04:00
dotasek 18ff00fcc3
Package Cache Concurrency (#1715)
* WIP on do-20240722-thread-safety

* Try lock downgrading for better performance

* Refactor FilesystemPackageCacheLockManager

* Tidy up spacing.

* Refactor initCacheFolder. Change read lock to stop asking for a write lock

* Clean up version in addPackageToCache

Since we run checkValidVersionString, version will never be null, and can be final. Also, everything else can be final.

* Make an even crash-ier test for the FilesystemPackageManager

* Move read lock starting point to beginning of addPackageToCache

* Code cleanup

* More code cleanup + enhanced test + more locks

* More aggressive testing + bug fixes and lock file creation

* Basic checks and creation for lockfile

* More testing + smarter check for lock file

* Some renaming and code cleanup

* Some more general tests

* Check whole cache write lock (instantiating)

* Fix references to local files

* A little less repetition than that...

* Fix unclosed channel causing windows failure

* Fix file sync issues when writing .index.json files + others

* Add TRUNCATE_EXISTING and WRITE open options (fix overwrite behavior)

* Revert "Add TRUNCATE_EXISTING and WRITE open options (fix overwrite behavior)"

This reverts commit cfed736cd6.

* Revert "Fix file sync issues when writing .index.json files + others"

This reverts commit 4daf7feb93.

* Some additional test coverage, since I already wrote it.

* Don't build indexes implicitly during reads.

* Woops. Forgot that a directory can disappear via deletion

* Remove larger package

* Clean up code + remove System.out chatter

* Remove long running test (is tested elsewhere) + clean up code
2024-08-27 11:29:41 -04:00
Grahame Grieve b7ddfe93b9 release notes 2024-08-27 18:01:56 +08:00
Grahame Grieve 56091f652a
Merge pull request #1722 from hapifhir/do-20240822-redirect-308
Handle 308 redirects
2024-08-27 08:01:39 +08:00
Grahame Grieve edd5b7a560
Merge pull request #1717 from hapifhir/do-20240816-xslt-external
Move all instantiation of transformerFactory to XMLUtils and set ACCESS_EXTERNAL flags automatically
2024-08-27 08:00:51 +08:00
Grahame Grieve 9aef2793ce
Merge pull request #1719 from robeastwood-agency/202408-re-cda-au-namespace
Add Australian CDA name prefix & uri
2024-08-27 07:59:36 +08:00
Grahame Grieve be52ad2e96
Merge pull request #1721 from hapifhir/2024-08-gg-misc
2024 08 gg misc
2024-08-27 07:58:48 +08:00
Grahame Grieve 292c6526dd Add time to output 2024-08-27 07:21:41 +08:00
dotasek 5dc40f8030
Update license-whitelist.txt 2024-08-26 15:27:06 -04:00
Grahame Grieve 829e1599a0 new messages for tx.fhir.org 2024-08-26 22:49:36 +08:00
Grahame Grieve 6de8821dce compile fix 2024-08-23 21:52:10 +08:00
Grahame Grieve da33791a23 fix NPE in ValueSetValidator 2024-08-23 21:51:25 +08:00
Grahame Grieve 96090efdf4 suppress spurious logging statement 2024-08-23 21:51:16 +08:00
Grahame Grieve 1b84fcd5af remove narrative from snapshot tests 2024-08-23 21:51:04 +08:00
Grahame Grieve af75c51fea Improve complex extension rendering when rendering by profile 2024-08-23 21:50:53 +08:00