Commit Graph

1099 Commits

Author SHA1 Message Date
markiantorno b36f54eb6b bumping version to fix release issues 2021-09-02 08:56:49 -04:00
markiantorno ae571d4bfb Updating version to: 1.1.68-SNAPSHOT and incrementing test cases dependency. 2021-09-02 03:52:18 +00:00
markiantorno 2bd2e3b864 Release: v1.1.67
Validator
* fix NPE bug logging terminology server calls
* fix NPE bug validating logical models
* fix problem with Type Name when validating against Logical Models
***NO_CI***
2021-09-02 03:26:20 +00:00
Grahame Grieve bcee0603e5 fix version 2021-09-02 12:20:48 +10:00
Grahame Grieve 1e3f5cdabc fix logical model type testing 2021-09-02 07:35:47 +10:00
Grahame Grieve 11e60c3825 * fix NPE bug logging terminology server calls
* fix NPE bug validating logical models
* fix problem with Type Name when validating against Logical Models
2021-09-02 06:27:06 +10:00
markiantorno f58cdec1c0 Updating version to: 5.4.13-SNAPSHOT and incrementing test cases dependency. 2021-09-01 04:29:12 +00:00
markiantorno 175eeeca2d Release: v5.4.12
Validator:

* Hack around erroneous R3 Invariant (ref-1)
* Add support for generating terminology spreadsheets from the command line validator
* Validate Resource.id and Element.id properly

Other Code Changes:
* Change the FHIRPath interface IEvaluationContext.resolveConstant to return List<Base> not Base (BREAKING CHANGE!)
* Binary Resource Renderer
* Spreadsheet Generation for terminology resources (org.hl7.fhir.r5.renderers.spreadsheets package)
* Fix various NPEs discovered by users
* Fix rendering of value sets that have no definition
* Mark generated narrative with a flag in user data
* return system for display when IWorkerContext.validateCode is called
***NO_CI***
2021-09-01 03:59:20 +00:00
Grahame Grieve 6c6052fa31 merge 2021-09-01 10:12:36 +10:00
Grahame Grieve 7d7280078f Hack fix for wrong R3 invariant, Improved Terminology Performance Tracking 2021-09-01 09:59:23 +10:00
Grahame Grieve 2845078c9e Spreadsheet generation by validator 2021-09-01 09:53:18 +10:00
Grahame Grieve 2250b01fdd improvements to tx client logging functionality and terminology performance tracking 2021-09-01 09:52:50 +10:00
Grahame Grieve f22855e82a change interface for evaluating constants in FHIRPath (allow collections) 2021-09-01 09:46:51 +10:00
Grahame Grieve 4d1f75920d
validation for resource and element id (#590)
* revise validation of resource and element id

* wip

Co-authored-by: markiantorno <markiantorno@gmail.com>
2021-08-27 11:28:47 -04:00
Grahame Grieve 3cb384a297 revise validation of resource and element id 2021-08-27 09:59:17 +10:00
markiantorno 99e85360d7 Updating version to: 5.4.12-SNAPSHOT and incrementing test cases dependency. 2021-08-25 23:38:16 +00:00
markiantorno 1b4c675c19 Release: v5.4.11
* Differential element fields minValue/maxValue are now correctly treated in the snapshot generation process
* Conversion context added to conversions process
* Users can now define custom behavior for CodeSystems, Extensions, BundleEntries, and Types by extending BaseAdvisor.
* Resource Conversions are now thread-safe, each using their own instance of the conversion context that is unique
* ConversionFactory classes are statically accessed, to minimize changes downstream
* I need to add more tests, there were very few to begin with, and it's my next task
* All conversion libraries and no play makes Mark a dull boy
* Exposed showMessagesFromReferences on the command line interface to support reporting validation errors on referenced types (particularly useful when validating messages & documents)
* https://github.com/hapifhir/org.hl7.fhir.core/issues/564
* https://github.com/hapifhir/org.hl7.fhir.core/issues/513
***NO_CI***
2021-08-25 23:10:46 +00:00
Mark Iantorno 88efa6f863
Issue 513 (#587)
* wip

* wip

* sdjkhfakjsdhllkjsdhfsdkh

* wip
2021-08-25 14:45:21 -04:00
Mark Iantorno be25055574
https://github.com/hapifhir/org.hl7.fhir.core/issues/564 (#572)
* https://github.com/hapifhir/org.hl7.fhir.core/issues/564

* updating help text as per Grahame's feedback.

* wip
2021-08-25 14:06:34 -04:00
Tadgh 5ca6d19c69
Replace proprietary notnull with javax.annotation.Nonnull (#584)
* Replace proprietary notnull with javax.annotation.Nonnull

* wip

Co-authored-by: markiantorno <markiantorno@gmail.com>
2021-08-25 08:39:44 -04:00
Lloyd McKenzie 4e96d087c9 Added documentation 2021-08-21 10:10:32 -06:00
Lloyd McKenzie 59902b6b9a Expose showMessagesFromReferences on the CLI as it provides much more useful information when validating Bundles. 2021-08-20 13:57:03 -06:00
markiantorno 9a66c87a05 Updating version to: 5.4.11-SNAPSHOT and incrementing test cases dependency. 2021-08-19 02:59:51 +00:00
markiantorno 0853126597 Release: v5.4.10
* Conversion context added to conversions process
* Users can now define custom behavior for CodeSystems, Extensions, BundleEntries, and Types by extending BaseAdvisor.
* Resource Conversions are now thread-safe, each using their own instance of the conversion context that is unique
* ConversionFactory classes are statically accessed, to minimize changes downstream
* I need to add more tests, there were very few to begin with, and it's my next task
* All conversion libraries and no play makes Mark a dull boy
***NO_CI***
2021-08-19 02:26:11 +00:00
Mark Iantorno 58c0e216e8
Conversion library overhaul (#568)
* wip

* adding pathing to 40_50 conversion

* wip

* 30_50 and 40_50 updated to factory

* 30_40 factory

* 14_50

* 14_40

* 14_30, 10_50

* 10_40

* 10_30

* forcing non-null on VersionConvertors

* *trying* to clean up advisor code, switching from jetbrains NotNull to javax Nonnull annotation

* all calls within convertor classes should use INSTANCE access, not factory to maintain thread safety

* adding README for conversion library

* spacing

* threaded test removal

* release notes

* Update RELEASE_NOTES.md

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>

* Update RELEASE_NOTES.md

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>

* Update org.hl7.fhir.convertors/CONVERTORS.md

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>

* Update org.hl7.fhir.convertors/CONVERTORS.md

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>

* Update org.hl7.fhir.convertors/CONVERTORS.md

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>

Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
2021-08-06 19:28:24 -04:00
markiantorno 99fcac64ac Updating version to: 5.4.10-SNAPSHOT and incrementing test cases dependency. 2021-07-15 16:29:01 +00:00
markiantorno 296ab05f10 Release: v5.4.9
* Big refactoring of conversion code. First big step in being able to add conversion context.
* https://github.com/HL7/fhir-ig-publisher/issues/295
***NO_CI***
2021-07-15 15:57:12 +00:00
Mark Iantorno aab5bd4a0f
Convertor refactor ii (#556)
* 10_30

* 10_40

* 10_50

* 14_30

* 14_40

* 14_50

* 30_40

* 40_50

* cleaningup
2021-07-07 22:41:14 -04:00
markiantorno c53cc54b96 Updating version to: 5.4.9-SNAPSHOT and incrementing test cases dependency. 2021-07-06 19:01:20 +00:00
markiantorno 1330ad7cf8 Release: v5.4.8
Fixed issue where validator fails to detect invariant issue when there are multiple profiles that use the same invariant on the same element. Also addressed issue revealed by the fix where the context resource wasn't being set properly when checking certain invariants (identified by one of the existing test cases).
***NO_CI***
2021-07-06 18:31:40 +00:00
Lloyd McKenzie 8d29632703
Fixed issue where validator fails to detect invariant issue when ther… (#554)
* Fixed issue where validator fails to detect invariant issue when there are multiple profiles that use the same invariant on the same element.  Also addressed issue revealed by the fix where the context resource wasn't being set properly when checking certain invariants (identified by one of the existing test cases).

* Moved notes from code into commit notes (this one) and added Release notes

Changed call to checkInvariants within checkChildByDefinition such that onlyNonInherited is now false because inherited invariants can be overridden and it's important to check both.  Note that this means that onlyNonInherited doesn't seem to be used any more.  @grahamegrieve - consider whether it should be removed.
2021-07-06 13:42:35 -04:00
markiantorno 1d7e8bf63d Updating version to: 5.4.8-SNAPSHOT and incrementing test cases dependency. 2021-07-05 17:01:20 +00:00
markiantorno c1adf78ed9 Release: v5.4.7
* Releasing to bring latest release up to Grahame's latest changes.
***NO_CI***
2021-07-05 16:01:31 +00:00
Grahame Grieve 4dd5b370e3 add properties mode as a known extension until it's defined properly 2021-06-25 17:36:45 +10:00
markiantorno 887365e778 Updating version to: 5.4.7-SNAPSHOT and incrementing test cases dependency. 2021-06-24 19:44:46 +00:00
markiantorno aa0b7bc056 Release: v5.4.6
Validator:
* Fix problem importing x-version extensions with multiple targets
* fix bug validating profiles on bundle.entry.resource
* Fix loading issues with German translations (Unicode encoding problem)

Version Conversion:

* Round trip old questionnaires properly with R5 (item.type)

Other code changes:

* Fix up questionnaire rendering for old versions
* Add support for using https:// references to HL7 website
* Add support for using https:// references to HL7 website
* Add support for R4B to context
* update pubpack to v0.0.9
***NO_CI***
2021-06-24 19:18:37 +00:00
Grahame Grieve b0c1f2b129 fix bug validating profiles on bundle.entry.resource 2021-06-24 21:48:27 +10:00
Grahame Grieve 309dbba9b6 update pubpack to v0.0.9 2021-06-24 21:47:50 +10:00
Grahame Grieve 3a319a5d57 Fix pathing issues in the validator 2021-06-23 20:35:38 +10:00
Grahame Grieve 1aaf086c55 Fix wrong profile error message + NPE prevention 2021-06-21 15:32:06 +10:00
markiantorno e68b5857b1 Updating version to: 5.4.6-SNAPSHOT and incrementing test cases dependency. 2021-06-17 22:28:48 +00:00
markiantorno 02e761c3dc Release: v5.4.5
* Fix validation bug on Canonical references
***NO_CI***
2021-06-17 21:59:19 +00:00
Grahame Grieve c4604029ff Fix validation bug on Canonical references 2021-06-18 07:08:12 +10:00
markiantorno dd49561bd7 Updating version to: 5.4.5-SNAPSHOT and incrementing test cases dependency. 2021-06-17 09:06:05 +00:00
markiantorno 952db0248a Release: v5.4.4
Validator:

* Add support for $index on aggregators in FHIRPath
* don't fail with an exception if an unknown resource type appears in contained resource
* improved validation for some value sets that are based on unknown code systems
* add the -verbose parameter, and add additional verbose messages
* CDA: Fix erroneous type validation on CDA templates

Conversion code:

* Ignoring abatementBoolean when converting from dstu2 to r4

Snapshot generator:

* CDA: Suppress erroneous "Expansion" text appearing in view
* CDA: Don't delete binding information in snapshot for CDA bindable data types

Other code changes:

* Fix rendering of slices so type on slicer is not hidden
* Fix rendering for most resources - remove empty tables (e.g. text element, that shouldn't render)
* Fix NPE rendering code systems with some kinds of properties
* Improve rendering of questionnaires (icons, option sets)
* Rendering: add support for CodeableReference
* Rendering: Support binding mode and XML element information
***NO_CI***
2021-06-17 08:33:35 +00:00
Grahame Grieve d67cecc83f * CDA: Fix erroneous type validation on CDA templates
* CDA: Suppress erroneous "Expansion" text appearing in view
* CDA: Don't delete binding information in snapshot for CDA bindable data types
* Rendering: add support for CodeableReference
* Rendering: Support binding mode and XML element information
2021-06-17 16:55:15 +10:00
Grahame Grieve 8088cedb66 add the -verbose parameter, and add additional verbose messages 2021-06-15 08:51:47 +10:00
markiantorno e5d2cf0f9c Updating version to: 5.4.4-SNAPSHOT and incrementing test cases dependency. 2021-06-05 01:16:45 +00:00
markiantorno eb2d0a499a Release: v5.4.3
Validator:
* Add NL translations
* Fix validation of extensions on patterns
* Validation of cardinality on address-line elements containing pattern elements fixed
* Ensure that validator creates errors on example urls by default
* Add -allow-example-urls option to the validator
* Fixed issue where when validating with no terminology server and a value set with only an expansion (no compose), the 'inferred' code system wasn't being populated and validation was then failing on a coding with no specified code system
* when validating value sets, use CodeSystem/$validate-code not ValueSet/$validate-code

Version Conversion Fixes:
* add copying of aggregation mode for conversion from 50 to 30
* add test for Observation conversion from 10 to 40
* add procedures conversion form dstu2 to r4
* add medication conversion from dstu2 to r4
* fix obscure issue converting discriminators from R2B to R4/5

Code Changes:
* Adding Maven exec to test validation cli jar
* Add SIDUtilities and clean up SID handling code across the code base
* fix rendering bug on references
***NO_CI***
2021-06-05 00:50:10 +00:00
Grahame Grieve a371f5fe3e Add -allow-example-urls option to the validator 2021-06-02 17:45:50 +10:00