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2312 Commits

Author SHA1 Message Date
Grahame Grieve e8f4bde1eb Fix formatting of error messages from terminology server 2024-01-30 19:03:54 +11:00
Grahame Grieve 9760b4134a kindling related fixes for terminology stability 2024-01-29 10:41:53 +11:00
Grahame Grieve 42bddb9fdb
Merge pull request #1554 from hapifhir/2024-01-gg-fix-expand-params 
2024 01 gg fix expand params
 2024-01-28 23:05:18 +11:00
dotasek.dev 46b535bd5c Restore _limit and _incomplete params 2024-01-26 11:18:23 -05:00
dotasek.dev 869166b0b3 Fix resolveOperationUri using slash instead of dollar sign 2024-01-26 11:13:44 -05:00
Grahame Grieve 81569a3984 remove duplicate way of handling parameters on expand value set 2024-01-26 06:27:24 +11:00
Grahame Grieve 07d81e3a5b
Fix additional bindings html generation issue (#1551) 
* Fix additional bindings html generation issue

* Use new test cases snapshot

---------

Co-authored-by: dotasek <dotasek.dev@gmail.com>
 2024-01-24 14:47:49 -05:00
Grahame Grieve 6004dfe8ea Fix additional bindings html generation issue 2024-01-20 06:43:35 +11:00
Grahame Grieve 1d08c506d0 release notes 2024-01-19 21:56:31 +11:00
Grahame Grieve a3d4c0645d Fix the way overly large value set expansions are handled 2024-01-19 20:09:57 +11:00
Grahame Grieve 70f30a2fe9 update tests for changes to expansion functionality 2024-01-19 10:40:17 +11:00
Grahame Grieve f1d81856a5 update presentation of fixed and pattern values in profile views 2024-01-19 10:40:03 +11:00
Grahame Grieve bf57789467 Fix expansion related bugs and adjust tests accordingly 2024-01-19 10:39:29 +11:00
Grahame Grieve 6838576d9e fix broken links rendering questionnaires 2024-01-18 11:42:07 +11:00
Grahame Grieve 0502234ba3 render target profiles on operation definition parameters 2024-01-18 11:41:56 +11:00
Grahame Grieve da5e389fd3 render target profiles on operation definition parameters 2024-01-18 11:40:46 +11:00
Grahame Grieve 0a41d467b9 fix bug in external valueset processing 2024-01-17 23:39:02 +11:00
Grahame Grieve 8f5afdbcd1 fix bug with processing external valuesets 2024-01-17 23:31:54 +11:00
Grahame Grieve 686f0afaca add debugging code 2024-01-17 23:17:53 +11:00
Grahame Grieve 8a8a13182d fix BOM issue parsing FML 2024-01-17 22:21:27 +11:00
Grahame Grieve d70cefcfd4 url encode parameters to call to resolve code system server 2024-01-17 20:52:46 +11:00
Grahame Grieve e28e33f06d add debug flag when expanding value sets 2024-01-17 20:47:56 +11:00
Grahame Grieve 1895698c24 fix NPEs in http logging 2024-01-17 20:47:32 +11:00
Grahame Grieve ae944151aa fix bug processing empty structure maps 2024-01-17 20:47:10 +11:00
Grahame Grieve 8613cd3944 rework terminology cache to manage multiple terminology servers 2024-01-17 20:44:37 +11:00
Grahame Grieve 63c62bb80c update tx cache for changes to cache 2024-01-17 20:36:47 +11:00
Grahame Grieve de0024ceec Add support for fetching unknown value sets from tx.fhir.org/ecosystem 2024-01-16 11:45:13 +11:00
Grahame Grieve ec67f6c97a Add search support to ITerminologyClient 2024-01-16 11:41:54 +11:00
Grahame Grieve 56fc442db4 revise BOM handling for stringToX routines 2024-01-15 17:29:42 +11:00
Grahame Grieve e6df130e3a handle value set with exclusion filters when expanding 2024-01-15 15:05:01 +11:00
Grahame Grieve 449821a4b4 update tests to handle missing value sets properly 2024-01-15 15:04:47 +11:00
Grahame Grieve 5b0f154620 tidy up fixmes 2024-01-12 10:10:18 +11:00
Grahame Grieve 362e7e2600 more work on multiple terminology servers 2024-01-12 09:16:16 +11:00
Grahame Grieve 69f13d2754 fix null flavor and rebuild cache 2024-01-10 21:26:35 +11:00
Grahame Grieve 9b9aa51e36 update headers on client to add ;fhirVersion=X 2024-01-10 15:48:47 +11:00
Grahame Grieve 765e41816a Stability fixes 2024-01-10 09:06:31 +11:00
Grahame Grieve 7c6d5fa688 extended unicode support 2024-01-10 08:00:32 +11:00
Grahame Grieve 7d7988597c track by-product files rendering resources 2024-01-10 06:15:42 +11:00
Grahame Grieve 4581849e72 fix typos in fhirpath error messages 2024-01-10 06:15:26 +11:00
Grahame Grieve 4fc0a78993 fix path 2024-01-09 14:10:59 +11:00
Grahame Grieve f7e0f658c0 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-01-09 13:22:23 +11:00
Grahame Grieve 2663bea72b update test cases for new facility to compare array sizes 2024-01-09 13:22:15 +11:00
Grahame Grieve 4160d02bd1 change type of error when value set circularity found 2024-01-09 12:00:00 +11:00
dotasek 3e2039a514 Fix tests + renaming 2024-01-08 12:35:12 -05:00
Grahame Grieve d74b0e2b4a Refactor Context to support multiple terminology services 2024-01-08 21:07:08 +11:00
Grahame Grieve cf72798e9f Properly populate property definitions in expansions 2024-01-05 12:39:32 +11:00
Grahame Grieve 4cdfb0fcd6 Add warning to user when referencing an extension that doesn't exist. 2024-01-05 12:39:00 +11:00
Grahame Grieve c4865e95c5 more fixing tests 2024-01-04 20:28:52 +11:00
Grahame Grieve 2b978b4d4d more terminology qa updates 2024-01-04 14:29:19 +11:00
Grahame Grieve 92fca7a947 more tx validation improvements 2024-01-03 22:19:05 +11:00
Grahame Grieve 84659e501c fix split implementation 2024-01-02 09:40:32 +11:00
Grahame Grieve f392abd708 clean up code 2023-12-31 08:35:02 +11:00
Grahame Grieve 159e189520 Add support for tracking source server of issue 2023-12-31 08:34:55 +11:00
Grahame Grieve d429f48760 major upgrade to validation - use terminology server to perform more logic, and standardise interface based on agreements with Vocab & Ontoserver 2023-12-30 23:02:19 +11:00
Grahame Grieve 683408c3c5 Adjust validation for changes to validation behaviour 2023-12-26 07:08:39 +11:00
Grahame Grieve cf28e3b440 update terminology cache after changes to tx validation behaviour 2023-12-26 07:08:07 +11:00
Grahame Grieve 3ed816209d update terminology server for test reconciliation with tx.fhir.org 2023-12-25 00:28:39 +11:00
Grahame Grieve 8e55d76a2e R6 release support 2023-12-22 21:23:40 +11:00
Grahame Grieve 70af787438 IPS development 2023-12-22 21:23:34 +11:00
Grahame Grieve 073311bbb6 Various fixes to terminology service after reconciliation with Michael Lawley 2023-12-22 21:20:10 +11:00
Grahame Grieve cf4a970e47 Fix bug handling null objects in JSON (R5) 2023-12-22 21:15:08 +11:00
Grahame Grieve 1cdcfb3396 fix bug handling XML name extension 2023-12-22 21:14:40 +11:00
Grahame Grieve 09c2c8f81b Improve handling of terminology error and warning messages + handling of example and fragment code systems 2023-12-15 04:21:50 -05:00
Grahame Grieve d59080b45f Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2023-12-15 02:48:27 -05:00
Grahame Grieve ea4ccdf527 Add support for logical_container extension 2023-12-15 02:44:37 -05:00
Grahame Grieve bb020dd739 clean up handling of xml_name 2023-12-15 02:44:07 -05:00
Grahame Grieve 6caef21869 fix up validation of fragment value sets 2023-12-14 20:40:50 -05:00
Grahame Grieve 046e814b07 fix string index error in xver manager 2023-12-14 07:20:33 -05:00
Grahame Grieve 75a3c325ef fix rendering of type for previous versions 2023-12-14 07:20:21 -05:00
dotasek 0afea8dc1d
CLI Task to preload package cache (#1508) 
* WIP start building preload task

* Slightly refactor exceptions

* sleep between each query

* WIP - FilesystemPackageCacheManager refactor

* Finish refactor

* Customize PackageVisitor

* Remove unused code

* Remove unused code 2

* Add debug logging for failing test

* Point withCacheFolder if to correct param

* Remove console chatter

* Rename to FilesystemPackageCacheManager.Builder

* Move logic to PackageCacheDownloader for re-use in other projects

* Fix spacing
 2023-12-13 11:27:15 -05:00
Grahame Grieve 46e063cc87 Handle all initial value types when rendering Questionnaires 2023-12-13 09:08:32 -05:00
Grahame Grieve 166cb445f8 More fixes for SearchParameter validation 2023-12-12 21:00:31 +13:00
Grahame Grieve cc424a04e1 fix problems setting owning committee consistently 2023-12-12 16:52:11 +13:00
Grahame Grieve 9fae571412 fix NPE in CDA check 2023-12-11 15:37:14 +11:00
Grahame Grieve 4b1488438e missed files 2023-12-11 14:10:26 +11:00
Grahame Grieve 161e92d439 other code 2023-12-06 17:57:35 +11:00
Grahame Grieve f30fda2382 more fixes for R6 build 2023-12-05 16:56:21 +11:00
Grahame Grieve c4f6fe4676 Addressing WG problems in kindling 2023-12-03 20:05:10 +11:00
Grahame Grieve 3eb8ad3ab1 minor vs logging fixes 2023-12-03 20:04:25 +11:00
Grahame Grieve 006958cf88 minor fix for vs rendering 2023-12-03 20:04:11 +11:00
Grahame Grieve 2b232c8b1b Fix stated path for error when code not in value set 2023-12-01 16:55:16 +11:00
Grahame Grieve 694251cb85 fix rendering of trigger definition using tables inside paragraphs 2023-12-01 16:54:54 +11:00
Grahame Grieve 18c4419b9e refactor FHIRPath package 2023-12-01 15:13:33 +11:00
Grahame Grieve 516ec50afa Fix problem with profiled resources being called examples in IG publisher 2023-12-01 10:37:46 +11:00
Grahame Grieve 36361eaa1d refactor timeout control on client 2023-11-24 12:06:18 +11:00
Grahame Grieve 5ee11cb3a8 Fix expansion language - don't set for displayName parameter 2023-11-24 08:51:20 +11:00
Grahame Grieve 3cd75ef89e adjust value set rendering for fragment code systems 2023-11-24 08:51:02 +11:00
Grahame Grieve bb9064a8cc fix NPE on some resources 2023-11-24 08:50:46 +11:00
Grahame Grieve 96b7d159a7 Fix rendering of TriggerDefinition 2023-11-24 08:50:21 +11:00
Grahame Grieve 31ffd84667 Checking parameter type for where() and all() 2023-11-24 08:49:59 +11:00
Grahame Grieve 289ab6b29c Support parsing ad-hoc json data type fragments 2023-11-24 08:49:24 +11:00
Grahame Grieve 51ae6a596b More memory work in IGpublisher 2023-11-24 08:48:54 +11:00
Grahame Grieve d1bec7bdba move ILoggingService 2023-11-24 08:47:52 +11:00
Grahame Grieve e8520b1907 Move json and xml extensions from extensions pack to tooling ig 2023-11-22 07:58:50 +11:00
Grahame Grieve 97a778302c Add support for rendering union and intersections of profiles in profile comparison 2023-11-22 07:55:16 +11:00
Grahame Grieve 6aaff35495 fhirpath iif() test case fixes 2023-11-22 07:52:47 +11:00
Grahame Grieve ee02e21710 fix identifier rendering 2023-11-17 07:10:24 +11:00
Grahame Grieve a7e8dc18a1 #1488 - don't fail on erroneously repeating elements, and more bundle link validation 2023-11-15 17:34:13 +11:00
dotasek 4906037448 Fix mockito matcher 2023-11-14 10:08:39 -05:00
Grahame Grieve 6cba0db3ac try to fix mock 2023-11-14 22:22:09 +11:00