d8dacd260f
Candidate service for working with profiles in applications
2022-12-19 17:20:31 +13:00
4028d9930b
Merge pull request #1041 from alexey-tschudnowsky/ISSUE_1040_Profile_Compare_NullPointerException
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fixes #1040 (NullPointerException while comparing profiles)
2022-12-17 08:09:12 +11:00
6b1ae35ef3
* Add validator support for fhir_comments in R2/R2B ( #1042 ) + Add validator checks around versions in extension URLs
2022-12-17 07:11:06 +11:00
85931f9ff2
commit version-base
2022-12-17 05:56:37 +11:00
84508415ef
fixes #1040
2022-12-16 16:46:49 +01:00
aaa5c9d6a4
Updating version to: 5.6.89-SNAPSHOT and incrementing test cases dependency.
2022-12-16 01:40:27 +00:00
a3a1e79674
Release: v5.6.88
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## Validator Changes
* Remove use of .fhir/package-client cache (only use the main .fhir/package now)
## Other code changes
* Hack work around for broken template input for R5 OperationOutcome
* Fix up problems with test case consistency in R5 test cases
* Add R5-snapshot3 version enum to R4 version list
***NO_CI***
2022-12-16 01:19:52 +00:00
bd85546820
reintroduce hack for invalid template OO json
2022-12-16 11:27:48 +11:00
64cc3771a6
fix tests to get versions consistent
2022-12-16 08:49:14 +11:00
415d8acc12
Add R5 snapshot3 to R4 versions enum
2022-12-16 08:48:24 +11:00
ba67d790b8
Updating version to: 5.6.88-SNAPSHOT and incrementing test cases dependency.
2022-12-14 03:25:16 +00:00
6d8cd59f1e
Release: v5.6.87
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## Validator Changes
* Change Java minimum version from 8 to 11
* Fix Error message missing parameter (very minor fix)
## Other code changes
* Refactoring package-list.json handling
* Upgrade code to latest R5 release (Snapshot 3)
* Fix bug with version patching loading package for the first time + fix bug determining spec reference
* Add Ids to profile spreadsheets
***NO_CI***
2022-12-14 02:48:33 +00:00
659457bb65
Merge branch 'master' into gg-202212-r5-update
2022-12-14 11:55:31 +11:00
72eae55218
fix new bug in package manager
2022-12-14 09:59:25 +11:00
2a7136021f
Allow any for resource enum
2022-12-14 07:05:39 +11:00
38c4785236
reverse SearchParameter.base change
2022-12-14 06:29:21 +11:00
0cf8cbcba5
fix failing tests
2022-12-13 22:17:45 +11:00
d1d391496e
upgrade to new R5 release
2022-12-13 21:13:29 +11:00
0e619971c4
Updating version to: 5.6.87-SNAPSHOT and incrementing test cases dependency.
2022-12-12 20:14:04 +00:00
bbf74e6f91
Release: v5.6.86
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## Validator Changes
* Change Java minimum version from 8 to 11
* Fix Error message missing parameter (very minor fix)
## Other code changes
* Refactoring package-list.json handling
***NO_CI***
2022-12-12 19:56:58 +00:00
915d5e89b7
Updating version to: 5.6.86-SNAPSHOT and incrementing test cases dependency.
2022-12-09 18:40:17 +00:00
c01a9444a4
Release: v5.6.85
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## Validator Changes
* Change rules around Document and Link Message validation (see [Jira](https://jira.hl7.org/browse/FHIR-39502 ) and [Zulip](https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/Entry.20isn't.20reachable.20by.20traversing.20from.20first.20Bundle.20entry ) for details)
* Allow https://example in questionnaire example links
## Other code changes
* Rendering Improvements for deprecated codes Including deprecation reason
* Add Accept header fetching JSON
* Fix version comparison bug
* Fixes for producing profile summary in IGs
* Add contents to .index.json and bump to v2
* Fix stated package & version in alternate versions packages
* Refactor ProfileUtilities.generateSnapshot
* Fix bug in XHTML generation around empty tags
* Fix NPE appending slashes
* Fix rendering timing to not use a specific verb
* Fix R2 - RX ValueSet convertor for Code Systems
***NO_CI***
2022-12-09 18:23:37 +00:00
5f2317a87c
Merge remote-tracking branch 'origin/master'
2022-12-09 23:34:24 +11:00
dd7ca2182a
rendering improvements for deprecated codes
2022-12-09 23:28:58 +11:00
f8a0e82785
Add standards status reason
2022-12-09 20:08:51 +11:00
771fb0ac00
Changes related to validation of document and message links
2022-12-09 11:09:17 +11:00
73cd123234
Merge pull request #1028 from hapifhir/gg-202212-xlsx-csv
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Gg 202212 xlsx csv
2022-12-07 06:11:32 +11:00
3ee52938d6
updates for all-profiles csv and xlsx
2022-12-06 16:21:33 +11:00
a67ca99786
Profile Utilities refactor ( #1027 )
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* Refactor 1 rename and starter comments
* Refactor 2 more renaming make method for match
* Make final what can be final
* Wrap root call to processPaths
* WIP Create ProfilePathProcessor
* Redo method scoop, move internal classes
* Use profileUtilities instance
* Finish scoop. Tests pass.
* Finish scoop for real this time.
* Encapsulate cursors
* Delete unused params
* Split path processing into two branches
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-12-05 17:32:16 -05:00
a0c28f3326
Round trip XHTML faithfully wrt empty elements
2022-12-05 13:41:31 +11:00
cacf27428e
Fix rendering of Timing to not have specific verb
2022-12-05 13:41:01 +11:00
54875fd17e
fix broken link to base spec
2022-12-05 13:40:17 +11:00
7966deb05c
Updating version to: 5.6.85-SNAPSHOT and incrementing test cases dependency.
2022-12-01 05:52:06 +00:00
b0d3dae149
Release: v5.6.84
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## Validator Changes
* Perform canonical resolution using package dependencies even for version specific references (workaround for VSAC bad behaviour)
## Other code changes
* Fix conversion between R3 andR4/R5 for Immunization.notGiven
* Fix parameter handling for tx server responses
* Add cast support for more types in FML implementation
* Fixes to GQL Schema generation
***NO_CI***
2022-12-01 05:35:31 +00:00
8b5cb283af
suppress logging
2022-12-01 08:26:07 +11:00
d24cc6c5ee
Merge remote-tracking branch 'origin/master'
2022-12-01 08:22:19 +11:00
8d6f2ff57d
Merge pull request #1020 from ahdis/oe_r5_structuremap_cast
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FHIR Mapping Language: cast support for more types #1019
2022-12-01 08:18:27 +11:00
fedfa88ffb
refactor resource reference resolution to use package dependencies whereever possible
2022-12-01 08:16:00 +11:00
d79ac9ba66
Merge remote-tracking branch 'origin/master'
2022-11-30 16:34:51 +11:00
518e5559c7
fix for #1022
2022-11-30 10:20:57 +10:00
8f9261febf
#1022 - fix expected type for Code Validation parameters
2022-11-30 11:04:47 +11:00
19e957ef53
Updating version to: 5.6.84-SNAPSHOT and incrementing test cases dependency.
2022-11-29 23:46:32 +00:00
b939b33040
Release: v5.6.83
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## Validator Changes
* no changes
## Other code changes
* Update FHIR test cases to released version
***NO_CI***
2022-11-29 23:29:15 +00:00
aaa53cdfb0
#1005 - fix graphql processing issue
2022-11-30 08:32:25 +11:00
5225640e50
Merge pull request #1018 from hapifhir/ja_20221129_graphql_type_cleanup
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Correct GraphQL Schema Validation Errors
2022-11-30 08:18:35 +11:00
2d8885d4e3
FHIR Mapping Language: cast support for more types #1019
2022-11-29 22:15:02 +01:00
2744b5eeed
Fixes to schema generator
2022-11-29 14:42:47 -05:00
8f1f961315
Revert "BugFix: Accepts null base in all implementations of FHIRPathEngines.evaluate(Base base, String path) to match all other evaluate methods. ( #1015 )" ( #1017 )
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This reverts commit ba828cbb0e
2022-11-29 14:39:59 -05:00
ba828cbb0e
BugFix: Accepts null base in all implementations of FHIRPathEngines.evaluate(Base base, String path) to match all other evaluate methods. ( #1015 )
2022-11-29 14:35:39 -05:00
ab00f53ee7
Updating version to: 5.6.83-SNAPSHOT and incrementing test cases dependency.
2022-11-29 18:22:35 +00:00
b11bf21f9b
Release: v5.6.82
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## Validator Changes
* no changes
## Other code changes
* Fix Turtle generation
***NO_CI***
2022-11-29 18:05:15 +00:00
1048a483a2
Fix turtle generation ( #1014 )
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Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
2022-11-29 11:29:04 -05:00
adfd0d26e6
Fix turtle generation
2022-11-30 01:40:07 +11:00
82bd4e5c25
Work on cleanup
2022-11-29 07:54:58 -05:00
63f905d184
Updating version to: 5.6.82-SNAPSHOT and incrementing test cases dependency.
2022-11-28 18:44:16 +00:00
2715d811dc
Release: v5.6.81
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## Validator Changes
* Avoid repeated R5 Extension loading in ValidatorService
* Fix problems validating logical models
* Fix `-locale` parameter functionality
* Add Spanish internationalization phrases
## Other code changes
* ProfileUtilities: Provide Standards Status in tree view
* JSONParser: numerous r4b/r5 speed improvements and fixes
* FHIRPathEngine: Catch exceptions resolving references in r5
* Handle null source and target in ConceptMap conversions
* Provide consistent rendering of comments in examples in IGs
* Preparations for changes to IG Publisher narrative generation
* Fix for Identifier.use conversion in dstu3
***NO_CI***
2022-11-28 18:23:09 +00:00
1b07d221ea
Merge remote-tracking branch 'origin/master'
2022-11-28 12:28:07 -03:00
a49a82aab5
capture exception chasing references
2022-11-28 12:27:41 -03:00
9405d0b715
Fix problems validating logical models
2022-11-28 12:27:26 -03:00
35774955ae
Produce Standards Status in tree view
2022-11-28 12:26:58 -03:00
65863d88d1
Merge pull request #1012 from hapifhir/gg-202211-json-comments
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Consistency around rendering comments in examples in IGs
2022-11-27 05:33:35 -03:00
49f798de48
Consistency around rendering comments in examples in IGs
2022-11-26 22:24:17 -03:00
83b2921c2e
Merge pull request #1011 from hapifhir/gg-202211-json5
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update JSON parser used by validator to JSON5 parser
2022-11-26 19:22:05 -03:00
53fb08ab19
update JSON parser used by validator to JSON5 parser
2022-11-26 18:24:29 -03:00
e189ae2b76
Merge pull request #1001 from ahdis/oe_np_with_structuremaps
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fix np and index out of bound exception
2022-11-26 01:00:34 -03:00
21bd9bf7e9
improve parsing speed for json resources
2022-11-25 22:36:51 -03:00
8f1e6f2c59
Improve parsing speed for Json resources
2022-11-25 22:36:38 -03:00
275d83a4c7
work around bug in template OO
2022-11-25 22:36:14 -03:00
962f3f09ea
prepare for changing the way the IG publisher generates narrative
2022-11-24 18:02:21 -03:00
80f275ff18
upgrade to new JSON parser
2022-11-24 17:57:46 -03:00
b3cc460ccd
fix nullpointer exceptions
2022-11-22 16:19:16 +01:00
01d212afac
Updating version to: 5.6.81-SNAPSHOT and incrementing test cases dependency.
2022-11-22 14:28:51 +00:00
3ab720a6af
Release: v5.6.80
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## Validator Changes
* Improved Loading speed (20% reduction)
* Fix issue handling path on content references on deeply nested content
## Other code changes
* Fix rendering issue when reference.reference missing
* Add rule date to validation messages so new rules can be highlighted
***NO_CI***
2022-11-22 14:05:59 +00:00
6bdf3389bb
fix bug missing R5 definitions in publisher
2022-11-22 06:38:01 -03:00
74b1b7f201
fix rendering issue when reference.reference missing
2022-11-22 05:58:17 -03:00
24331956f1
Add rule date to validation messages so new rules can be highlighted
2022-11-22 05:58:02 -03:00
8136b00c86
work on loading speed for validator
2022-11-21 18:46:47 -03:00
68360cb110
Fix issue handling path on content references on deeply nested content
2022-11-21 18:45:33 -03:00
cc842bc114
Updating version to: 5.6.80-SNAPSHOT and incrementing test cases dependency.
2022-11-20 19:32:31 +00:00
ee7ba71b29
Release: v5.6.79
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## Validator Changes
* no changes
## Other code changes
* fix references to LOINC codes in generated narrative
***NO_CI***
2022-11-20 18:59:55 +00:00
bce3f5464f
Merge remote-tracking branch 'origin/master'
2022-11-20 12:57:48 -03:00
5cda3573be
fix for non-breaking space usage
2022-11-20 12:27:41 -03:00
8e3833f58a
Fix broken LOINC link
2022-11-19 03:39:35 -03:00
d7d93b486b
Updating version to: 5.6.79-SNAPSHOT and incrementing test cases dependency.
2022-11-17 21:34:46 +00:00
14a8c388fd
Release: v5.6.78
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## Validator Changes
* Validate HTML entities in XHTML in resources
## Other code changes
* Stop producing XHTML entities in resources when rendering
***NO_CI***
2022-11-17 21:15:59 +00:00
b4d21b8263
Merge pull request #994 from hapifhir/gg-202211-xhtml-entities
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Gg 202211 xhtml entities
2022-11-17 16:57:04 -03:00
4fa05d8297
fix bug producing html entities in XHTML in resources when rendering
2022-11-17 15:21:39 -03:00
28d107b4ae
Validate XHTML entities in XML
2022-11-17 15:21:17 -03:00
82972d5216
Add https-proxy param + fix proxy authorization header ( #888 )
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Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-11-17 11:27:21 -05:00
bb8775bfdb
Updating version to: 5.6.78-SNAPSHOT and incrementing test cases dependency.
2022-11-16 22:55:59 +00:00
41ffa42dc6
Release: v5.6.77
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## Validator Changes
* Minor fix to jurisdiction output (+ handle case where JVM has no locale)
* Add support for extensions parameter
* Make all error messages include version of underlying resource if available
* Accept display for code from ValueSet CLD if no code system available
* Various minor improvements to error messages
## Other code changes
* Minor clean up in test cases
* Fix up i18n support to handle pluralization properly
* Refactor resource narrative generation rules (GenerationRules.X)
* Display resource type in generated narrative
* Add support for generating R4 and R4B packages
* Add support for generating XVer packages
***NO_CI***
2022-11-16 22:38:33 +00:00
47443acaf3
prepare release
2022-11-16 18:36:02 -03:00
cf7ef7218a
Merge pull request #979 from lmckenzi/NewIGHelp
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Change default help location for tables
2022-11-15 07:18:13 +11:00
d724d48f89
Do remove excluded tests 2 ( #988 )
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* WIP remove excluded tests + disable breaking test
* Fix failing test, document test cases.
* Code cleanup
The following are cherry picked from GG branch:
* Fix problem with value set validator hiding errors
* Fix issue rendering resource by name
* fix error location
Co-authored-by: dotasek <david.otasek@smilecdr.com>
Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
2022-11-14 13:30:26 -05:00
db643e8eca
fix typo
2022-11-10 10:00:26 +11:00
21b0577249
track hint about code validation
2022-11-10 05:16:10 +11:00
b7a882114d
accept code/display from CLD if no code system available
2022-11-10 05:15:27 +11:00
96218a5ce4
refactor resource narrative generation rules
2022-11-10 05:14:59 +11:00
11c369ea09
Remove all _PLURAL labels from constants
2022-11-07 16:52:47 -05:00
183f9ecfd2
Remove _PLURAL labels from keys
2022-11-07 16:39:40 -05:00
6b5d184f89
Merge remote-tracking branch 'origin/master' into do-i18n-plurals
2022-11-07 14:52:40 -05:00
a6ba8fd67a
Fixed HL7 Validator CLI Jurisdiction Output ( #980 )
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* Failing test
* Fixed breaking jurisdiction test
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-11-07 11:59:33 -05:00
ffec2ce1c5
Merge remote-tracking branch 'origin/master' into do-i18n-plurals
2022-11-07 09:23:36 -05:00
212096f228
Updating version to: 5.6.77-SNAPSHOT and incrementing test cases dependency.
2022-11-06 12:50:41 +00:00
cc634aecd5
Release: v5.6.76
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## Validator Changes
* Add support for R4B to validator (parts were missing)
* Fix bugs in Logical Model snapshot generation and validation (both instances and logical models themselves)
* Check min/max value for decimal values
## Other code changes
* Fix broken links rendering questionnaires
* Fix issue with converting ActivityDefinition.kind between R5 and R4/R4B/R3 (+ update R5 code)
* Fixes to terminology cache management for test cases
* Process relative links in markdown in code descriptions when rendering value sets
* Fix issue with contained resource not always rendering consistently
* Fix bug where Element Model paths are not populated after preforming a transform
* Fix NPE rendering invalid bundles
* refactor Paramters.getParameter helper methods
* Rendering improvements for logical models
***NO_CI***
2022-11-06 12:33:46 +00:00
1d9b05a27b
Changed flyover for constraints to say "constraint" instead of "invariant"
2022-11-05 23:26:13 -06:00
c835201f36
Merge remote-tracking branch 'origin/master'
2022-11-06 10:16:22 +11:00
4b0c42c832
Fix bug with jurisdiction locale in validator
2022-11-06 10:12:36 +11:00
d19ff2e1f6
Merge pull request #972 from hapifhir/do-terminology-cache-filewpipechar
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Fix pipes in terminologyCache files
2022-11-06 07:04:58 +11:00
305f93ca26
Fix broken SDC links in Q & QR rendering
2022-11-05 11:30:27 +11:00
01411cfa6c
regenerate R5 (ActivityDefinition.kind = TASK), and check synced for RDF Generation issues
2022-11-05 11:28:11 +11:00
99bd733fe0
Update tests + fix 11073 codesystem
2022-11-03 16:33:56 -04:00
6ecd4c70fe
Parse out version for all systems in TerminologyCache files
2022-11-03 14:29:38 -04:00
fc7cd56335
Merge remote-tracking branch 'origin/master' into do-i18n-plurals
2022-11-03 13:35:40 -04:00
74659e4648
Merge remote-tracking branch 'origin/master' into do-terminology-cache-filewpipechar
2022-11-03 12:51:19 -04:00
c49a2c0fc5
Fix link to extension style
2022-11-03 15:59:42 +11:00
2519858dcd
update logical model snapshot generation and validation
2022-11-03 15:59:22 +11:00
16a0a08598
Parse out canonical url version + refactor
2022-11-02 16:58:28 -04:00
8e663f3ce9
Merge branch 'master' into do-terminology-cache-filewpipechar
2022-11-02 11:08:45 -04:00
16e21c5bbe
fix bug in simple http client when no accept header is set
2022-11-02 20:57:05 +11:00
68a3b6c808
process markdown relative references
2022-11-02 20:56:40 +11:00
c8bf2aa4e5
fix issue with contained resources not rendering
2022-11-02 20:56:17 +11:00
ca96bbfdc4
fix bug where ElementModel paths are not populated
2022-11-02 20:55:35 +11:00
261462b348
Fix for NPE on invalid bundles
2022-11-02 08:52:02 +11:00
1ae7093eef
#934 Parameters object's getParameter(String theParameterName) is misnamed
2022-11-02 08:51:17 +11:00
5558f0458f
Refactor
2022-10-31 14:53:50 -04:00
942777da11
Fix token name for code system
2022-10-31 14:27:03 -04:00
21037e2cdf
Failing test
2022-10-31 14:22:46 -04:00
269680608f
Merge master
2022-10-31 09:50:26 -04:00
5116536617
Finish CDS hooks extension validation
2022-10-29 19:18:19 +11:00
ddf769851b
improve error messages in json parser
2022-10-29 11:59:00 +11:00
27511f40dd
Add support for json-primitive-choice
2022-10-29 09:11:09 +11:00
25ef2dca4d
Merge remote-tracking branch 'origin/master' into do-i18n-plurals
2022-10-28 14:54:37 -04:00
2de6340cfa
Rename PL to Plural in method signatures
2022-10-28 14:44:09 -04:00
f0c53bd7a9
Updating version to: 5.6.76-SNAPSHOT and incrementing test cases dependency.
2022-10-28 11:57:13 +00:00
a285132f5b
Release: v5.6.75
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## Validator Changes
* Fix problem determining implicit code system when code system only known to tx.fhir.org
## Other code changes
* Fix bugs generating CDSHooks snapshots
* Fix for NPE rendering Patient Photo
* Fix problem generating snapshots for specializations where inherited types have properties
* Work on i18n framework
***NO_CI***
2022-10-28 11:38:37 +00:00
1e046a0d00
fix for NPE rendering patient photo
2022-10-28 21:59:08 +11:00
27febc03ef
inherited type URLs
2022-10-28 21:58:59 +11:00
63767a78c3
more work in CDS Hooks extensions
2022-10-28 17:49:22 +11:00
83dfcd398c
Fix problem with determining implied code system
2022-10-28 09:09:48 +11:00
a70fc37b87
Fix NPE processing snapshot
2022-10-26 23:20:31 +11:00
b187d289b6
fixes for plural messages for i18n
2022-10-26 14:30:25 +11:00
cf111ac919
Updating version to: 5.6.75-SNAPSHOT and incrementing test cases dependency.
2022-10-25 09:35:23 +00:00
325fd0736d
Release: v5.6.74
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## Validator Changes
* Improve error message for extensions without values
## Other code changes
* Add support for Requirements Resource (rendering + caching)
* Tidy up support for ActorDefinition
* Generate better summary for references
* Clean up bug checking data types in ContextUtilities
* Remove Validator dependency on GSON
* Upgrade validator to produce PSVI for tools to make use of
***NO_CI***
2022-10-25 09:13:57 +00:00
887b4be428
caching Requirements and ActorDefinitions
2022-10-25 15:03:26 +11:00
5be607152c
Add summary rendering for references
2022-10-25 15:03:03 +11:00
6a02896b36
add requirements renderer
2022-10-25 15:02:39 +11:00
dd36590599
Add requirements renderer
2022-10-25 15:02:10 +11:00
c13f24ef4c
clean up bug checking data types in ContextUtilities
2022-10-25 14:58:00 +11:00
f1c56ca0d6
remove unused methods from ActorDefinition renderer
2022-10-25 07:28:28 +11:00
Grahame Grieve
Grahame Grieve
Alexey Tschudnowsky
markiantorno
dotasek
Michael Lawley
Oliver Egger
James Agnew
Vitor Pamplona
dotasek
Hank Yang
Lloyd McKenzie