Commit Graph

195 Commits

Author SHA1 Message Date
Grahame Grieve ac33590b96 #1412 - fix out of memory issues 2023-08-29 17:34:03 +02:00
Grahame Grieve 7eaa723ec9 rewrite the way language works in value sets 2023-08-25 13:09:36 +02:00
Grahame Grieve 390e25ddae more test fixes 2023-08-19 22:46:23 +10:00
Grahame Grieve 1d4eefa62b Rename implySystem to inferSystem per TI decision 2023-08-13 19:55:52 +10:00
Grahame Grieve 6041660e9b Improved error messages on server failure 2023-08-11 14:16:09 +10:00
Grahame Grieve 952dedd06b #1343 - addChild error in PEBuilder 2023-08-09 19:48:01 +10:00
Grahame Grieve 95d30dee24 more fixing r4b test cases 2023-07-27 21:03:32 +10:00
Grahame Grieve 4677f319cb Fix R4B liquid processor 2023-07-27 20:07:36 +10:00
Grahame Grieve 3eef08dab8 remove unused imports 2023-07-26 08:31:21 +10:00
dotasek 2654e85df3
Implement private NPM server (#1337)
* WIP start adding NPM data.

* WIP 2 Testing against verdaccio npm

* WIP private npm package servers

* WIP2 add server type config

* WIP3 parse tarball url

* Fix package date parsing, start mocking server tests

* Add dummy package, assert authorization and content

* Add more tests

* Add serverType to settings test

* Ignore tgz files for bidi check

* tighter bidi ignore

* different ignore regex

* Make packageManagement settings, allow ignoring default package servers

* New tests + token authentication

* Manage 404s when configured servers don't have package
2023-07-22 11:01:36 -04:00
dotasek b62f9afc5a
Remove resourceType, version, and qualifier from FHIRPath id results (#1357)
* Breaking test

* Strip returned IIdType of qualifier, version, and resourceType

* Add fix to r4b

* Add fix to r5
2023-07-22 11:01:13 -04:00
Grahame Grieve 4e8f0f0c0c
Merge pull request #1353 from hapifhir/2023-07-gg-context-fixes
2023 07 gg context fixes
2023-07-21 14:48:19 +10:00
Grahame Grieve 8cf086b203 update R4 and R4B FHIRPath implementations for changes picked up in R5 usage 2023-07-21 14:09:11 +10:00
dotasek 2f11af9bfa
Return HumanName getText() preferentially in getNameAsSingleString (#1355)
* Failing tests

* Return getText if it exists in HumanName
2023-07-18 12:22:53 -04:00
dotasek 8cf4a62f32
Remove unneeded resources (#1346) 2023-07-12 16:46:42 -04:00
Grahame Grieve 29e9f28add update SPDX code system in R4/R4B for support for not-open-source 2023-07-05 07:18:44 +10:00
Grahame Grieve 2f253f3457 Update SPDX implementation 2023-06-24 08:55:51 +10:00
Grahame Grieve 3f6ec1da47 Revert "update R4B FHIRpath implementation"
This reverts commit 3abd19cc4d.
2023-06-21 10:19:02 +10:00
Grahame Grieve 3abd19cc4d update R4B FHIRpath implementation 2023-06-21 09:19:19 +10:00
dotasek ae59d97ba5 Document new method, add to all FHIR versions 2023-06-19 15:41:04 -04:00
dotasek 7b05c7514e
Bump poi version, remove unused old dependencies (#1296) 2023-06-08 10:47:37 -04:00
James Agnew 0eca8d14ba Fix asStringValue on IdType 2023-05-23 17:02:23 -04:00
Grahame Grieve 37bf22f8e9 Add path to error message 2023-05-13 21:46:58 -07:00
Grahame Grieve 491b5ccb4a Fix for wrong display when server returns error 2023-05-08 07:09:32 -05:00
Grahame Grieve ae13abfc2a performance related changes 2023-05-07 11:04:04 -05:00
Grahame Grieve 89c1c8608c Fix up StructureMap R4/R5 conversion 2023-05-01 18:08:35 +10:00
Grahame Grieve 34f149f0c8 Add support for JSON in tx client batch handling 2023-04-29 08:41:05 +10:00
Grahame Grieve 9d53b738df Improved error message when code not in value set 2023-04-28 07:36:00 +10:00
James Agnew 2fd0a07d9f Return ID part when FhirPath expression result is converted to string 2023-04-18 09:07:57 -04:00
Grahame Grieve 02bd1d8ce7 more fixing for language handling issues 2023-04-18 09:40:49 +08:00
Grahame Grieve c9416e9a56 Merge remote-tracking branch 'origin/master' 2023-04-14 18:01:18 +10:00
Grahame Grieve 6ac00b8c68 rework terminology interface 2023-04-14 17:59:06 +10:00
Amir Toosi b09e536387
Fix HumanName getNameAsSingleString never returning text element (#1207)
* Fix HumanName getNameAsSingleString never returning text element

* Add test + gentle rename in joinStringsSpaceSeparated

* removed unused variable from unit test. added fix for getNameAsSingleString to r5.

* changed variable names in joinStringSpaceSeparated to more meaningful names

* Add tests and fixes for dstu2016may, dstu3, and r4b + gentle refactor

---------

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-04-12 14:31:58 -04:00
Grahame Grieve 03eb6e7bf0 more work doing terminology server testing 2023-04-08 15:06:51 +10:00
Grahame Grieve f1a4dad582 Fix R4B tests to be based on R4B 2023-04-04 06:54:12 +10:00
Grahame Grieve 0bbff8d14d rework package cache manager - add testing mode 2023-04-02 23:06:29 +10:00
Grahame Grieve e59c83855d Defining the existence of R6 2023-04-01 07:32:02 +11:00
Grahame Grieve 76c96a53d6 Work around issue with R5 path in extensions pack 2023-03-30 23:30:23 +11:00
Grahame Grieve 15909f8302 fix path failure in tests 2023-03-21 18:42:48 +11:00
Grahame Grieve f796ffc57f fix issues with help16.png 2023-03-21 18:21:42 +11:00
dotasek 909f7e64fe
Additional zip-slip tests (#1162)
* Additional zip-slip tests

* Fix windows path test
2023-03-09 14:30:53 -05:00
Grahame Grieve 0c26f09721 revise whitespace handling for unicode conformance in validator 2023-03-07 06:25:45 +11:00
dotasek 5f26efffec
Fix r4b FhirVersionEnum (#1132)
* Fix FhirVersionEnum

* Remove old comment

---------

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-02-23 09:21:46 -05:00
Grahame Grieve 38a55d261d update table generator to suppress external links in base row and column 2023-02-18 15:13:13 +11:00
Grahame Grieve 2628f6fac1 FHIRPath changes for as - case and singleton issues 2023-02-03 12:11:53 +11:00
dotasek b50aec5912
Advisory fix 1 (#1089)
* Update cache and comparison downloads to use https

* Zip Slip tests and fix

* Zip Slip tests 2 and fix

* Add missing tempDir child in ScannerTest

* Add win format zip test

* Add tests to r4b

* Add tests and fixes for slips in tgz processing

* Update fhir-test-cases version
2023-01-20 16:56:57 -05:00
Grahame Grieve f8e6371e1f
Merge branch 'master' into gg-202301-sm-errors 2023-01-20 19:44:24 +11:00
dotasek f58b7acfb5
Swaps isBase64 with internal implementation for Android compatibility (#1079)
* Adding animal sniffer to display all issues related to android compatibility.

* Duplicate isBase64 internally

Co-authored-by: Vitor Pamplona <vitor@vitorpamplona.com>
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-01-18 18:40:24 -05:00
Grahame Grieve 26027fa3d6 update FHIRPath implementation for discussion at 84a07a6a92 2023-01-19 06:59:45 +11:00
Grahame Grieve 7b99037199 fix BOM in java files 2023-01-17 12:49:14 +11:00
Grahame Grieve 01c131b29d see PR 1075 - fix issue with setProperty() ignoring extensions 2023-01-17 11:22:42 +11:00
Grahame Grieve 6c2a488402 fix type convertors to handle null 2023-01-16 10:12:59 +11:00
Grahame Grieve b894cc6da7
Merge pull request #1048 from qligier/pr-fix-text-appending
Fix appending text in ProfileUtilities
2022-12-31 09:10:24 +11:00
Grahame Grieve 9959183017 more work on PEDefinition 2022-12-26 13:28:22 +13:00
Quentin Ligier 858c06f097
Fix appending text in ProfileUtilities
If the base text was null, appending a text in the derived element (using "...") would show a "null" before the text. This commit adds the method Utilities.appendDerivedTextToBase() to implement to correct behavior.
2022-12-23 18:52:47 +01:00
Grahame Grieve 49f798de48 Consistency around rendering comments in examples in IGs 2022-11-26 22:24:17 -03:00
Grahame Grieve 80f275ff18 upgrade to new JSON parser 2022-11-24 17:57:46 -03:00
Grahame Grieve 8136b00c86 work on loading speed for validator 2022-11-21 18:46:47 -03:00
Grahame Grieve 8e3833f58a Fix broken LOINC link 2022-11-19 03:39:35 -03:00
Grahame Grieve b4d21b8263
Merge pull request #994 from hapifhir/gg-202211-xhtml-entities
Gg 202211 xhtml entities
2022-11-17 16:57:04 -03:00
Grahame Grieve 28d107b4ae Validate XHTML entities in XML 2022-11-17 15:21:17 -03:00
dotasek 82972d5216
Add https-proxy param + fix proxy authorization header (#888)
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-11-17 11:27:21 -05:00
Grahame Grieve cb72792b7e More work on R4 <-> R4B guides 2022-11-14 18:03:22 +11:00
dotasek 11c369ea09 Remove all _PLURAL labels from constants 2022-11-07 16:52:47 -05:00
dotasek 183f9ecfd2 Remove _PLURAL labels from keys 2022-11-07 16:39:40 -05:00
dotasek ffec2ce1c5 Merge remote-tracking branch 'origin/master' into do-i18n-plurals 2022-11-07 09:23:36 -05:00
Grahame Grieve d19ff2e1f6
Merge pull request #972 from hapifhir/do-terminology-cache-filewpipechar
Fix pipes in terminologyCache files
2022-11-06 07:04:58 +11:00
Grahame Grieve c01d434b33 fix SDC rendering issue for R4B 2022-11-05 15:55:27 +11:00
Grahame Grieve 305f93ca26 Fix broken SDC links in Q & QR rendering 2022-11-05 11:30:27 +11:00
dotasek 14fdb713d9 Backport TerminologyCache changes to r4, r4b 2022-11-03 17:47:48 -04:00
dotasek fc7cd56335 Merge remote-tracking branch 'origin/master' into do-i18n-plurals 2022-11-03 13:35:40 -04:00
Grahame Grieve 1ae7093eef #934 Parameters object's getParameter(String theParameterName) is misnamed 2022-11-02 08:51:17 +11:00
dotasek 827d088732 More renaming 2022-10-28 16:43:38 -04:00
dotasek 2de6340cfa Rename PL to Plural in method signatures 2022-10-28 14:44:09 -04:00
Grahame Grieve cc38567c93 fix r4b test failure 2022-10-26 23:20:42 +11:00
Grahame Grieve b187d289b6 fixes for plural messages for i18n 2022-10-26 14:30:25 +11:00
Grahame Grieve 56e8774c8f Fix problem with R4B FHIRPath tests 2022-10-07 09:20:34 +11:00
Grahame Grieve b9036524d5 R5 FHIRPath engine fixes for polymorphism + update R4B FHIRPath engine to match R5 2022-10-07 08:08:04 +11:00
dotasek eabf51938b
Remove CapabilityStatement2 from reported and checked resource names (#935)
* Remove CapabilityStatement2 from reported and checked resource names

* Update RELEASE_NOTES.md

***NO_CI***

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-09-30 13:10:51 -04:00
dotasek c51f7c2327
Enhanced testing for character encoding issues (#928)
* Redo pull pipeline to check for alternate file encodings

* Fix jdkVersion references in pull-request-pipeline

* Failing test for Cp1252 encoded Java environments

* Fix file encoding mistake

* Add fix + refactor test

* Backport ParserBase changes and tests to previous versions

* And I mean it, this time

* Update tx cache resources

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-09-23 10:38:10 -04:00
Grahame Grieve df0bc26d47 rationalise extensions 2022-09-17 14:54:20 -04:00
Grahame Grieve ccc38e48df Fix NPE processing constraints without keys + fix for R5 terminology package problem 2022-09-16 23:49:26 -04:00
Grahame Grieve f4aed6f2a2 Fix bug in RDF generation in R4B 2022-09-15 08:58:52 +02:00
Grahame Grieve 35233ee1e5 R5 updates for IG publisher 2022-09-15 08:41:37 +02:00
Grahame Grieve 4cbbce4ec8 img conformance in xhtml 2022-09-08 22:22:17 +10:00
Grahame Grieve 7dd2f3edf6 r4b snapshot tests 2022-09-07 21:56:24 +10:00
Grahame Grieve f30f3e9ca9 fix failing rendering test 2022-09-07 11:12:57 +10:00
Grahame Grieve 44aeaa1a80 R4b Narrative tests fix up 2022-09-07 08:10:51 +10:00
Grahame Grieve 4dde247466 fix npe in narrative generation (r4b) 2022-09-07 08:10:39 +10:00
Grahame Grieve 5220f2552b Merge remote-tracking branch 'origin/master' 2022-08-26 21:18:44 +10:00
Grahame Grieve 1c29587015 fixed 2022-08-26 21:18:39 +10:00
Grahame Grieve ac9a1fc2c7
Merge pull request #903 from hapifhir/do-datetimetype-gregorian-zero
Fix DateTimeType inconsistencies when using field setting
2022-08-26 06:43:03 +10:00
dotasek e79b2bf199
Return lists for FHIRPath constants in r4 (#902)
* Test for r5

* Test for r4b

* r4 test + fix

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-08-25 10:02:13 -04:00
dotasek cc2ec05afe Improve test 2022-08-24 15:24:45 -04:00
dotasek 5b1ac27b12 Fix 2022-08-24 14:54:08 -04:00
dotasek f8d7aa755e Failing tests 2022-08-24 14:53:56 -04:00
Grahame Grieve 84cb59683c r4b changes for r5 2022-08-10 22:22:50 +10:00
jamesagnew 056e41d19d Add Reference.resource to output of copy(). 2022-08-09 11:23:23 -04:00
Grahame Grieve 1aab88f6a7 migrate r5 changes to r4b 2022-08-09 22:29:59 +10:00
Grahame Grieve 1ac49bdce2 Add R4B / R5 Conversions 2022-07-28 21:30:12 +10:00