Commit Graph

1845 Commits

Author SHA1 Message Date
markiantorno f72d115f0f Release: v5.5.2
* Adding option to modify headers for http tx requests
***NO_CI***
2021-09-10 01:57:53 +00:00
Grahame Grieve 8a1e93b849 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2021-09-10 06:51:35 +10:00
Mark Iantorno e5a05f5562
Terminology client headers (#599)
* wip

* adding tests for headers in client

* fix

* r4 updated httpclient

* updating http client code for r4 and dstu3

* dunno why this didn't get added before
2021-09-09 16:32:19 -04:00
Grahame Grieve a56978bdd0 remove invalid warning 2021-09-04 05:58:20 +10:00
Grahame Grieve f8268442d1 fix duplicate sheet name problem generating spreadsheets 2021-09-03 17:31:05 +10:00
Grahame Grieve f0738ac706 fix NPE cloning integer 2021-09-03 17:27:53 +10:00
Grahame Grieve bd6225cf9e fix bugs to do with value set expansion 2021-09-03 17:27:23 +10:00
markiantorno 19d255636c Updating version to: 5.5.2-SNAPSHOT and incrementing test cases dependency. 2021-09-02 15:37:47 +00:00
markiantorno 23688f54f6 Release: v5.5.1
* The release failed and we need to do a quick release to fix versioning.
***NO_CI***
2021-09-02 15:09:38 +00:00
markiantorno b36f54eb6b bumping version to fix release issues 2021-09-02 08:56:49 -04:00
markiantorno ae571d4bfb Updating version to: 1.1.68-SNAPSHOT and incrementing test cases dependency. 2021-09-02 03:52:18 +00:00
markiantorno 2bd2e3b864 Release: v1.1.67
Validator
* fix NPE bug logging terminology server calls
* fix NPE bug validating logical models
* fix problem with Type Name when validating against Logical Models
***NO_CI***
2021-09-02 03:26:20 +00:00
Grahame Grieve bcee0603e5 fix version 2021-09-02 12:20:48 +10:00
Grahame Grieve 3d57a2b511 compile fix + release notes 2021-09-02 06:41:41 +10:00
Grahame Grieve 11e60c3825 * fix NPE bug logging terminology server calls
* fix NPE bug validating logical models
* fix problem with Type Name when validating against Logical Models
2021-09-02 06:27:06 +10:00
markiantorno f58cdec1c0 Updating version to: 5.4.13-SNAPSHOT and incrementing test cases dependency. 2021-09-01 04:29:12 +00:00
markiantorno 175eeeca2d Release: v5.4.12
Validator:

* Hack around erroneous R3 Invariant (ref-1)
* Add support for generating terminology spreadsheets from the command line validator
* Validate Resource.id and Element.id properly

Other Code Changes:
* Change the FHIRPath interface IEvaluationContext.resolveConstant to return List<Base> not Base (BREAKING CHANGE!)
* Binary Resource Renderer
* Spreadsheet Generation for terminology resources (org.hl7.fhir.r5.renderers.spreadsheets package)
* Fix various NPEs discovered by users
* Fix rendering of value sets that have no definition
* Mark generated narrative with a flag in user data
* return system for display when IWorkerContext.validateCode is called
***NO_CI***
2021-09-01 03:59:20 +00:00
Grahame Grieve 6c6052fa31 merge 2021-09-01 10:12:36 +10:00
Grahame Grieve 66fb0893ad Rendering for Binary Resources 2021-09-01 09:54:03 +10:00
Grahame Grieve 2250b01fdd improvements to tx client logging functionality and terminology performance tracking 2021-09-01 09:52:50 +10:00
Grahame Grieve f22855e82a change interface for evaluating constants in FHIRPath (allow collections) 2021-09-01 09:46:51 +10:00
Grahame Grieve e28a0d9d52 more spreadsheet changes 2021-09-01 07:02:37 +10:00
Grahame Grieve 5a7393c7ec rework spreadsheet generation to support more resource types 2021-09-01 07:02:00 +10:00
Grahame Grieve 4d1f75920d
validation for resource and element id (#590)
* revise validation of resource and element id

* wip

Co-authored-by: markiantorno <markiantorno@gmail.com>
2021-08-27 11:28:47 -04:00
Grahame Grieve 3d1676170a fixes for processing code validation outcomes 2021-08-27 10:41:43 +10:00
Grahame Grieve 7d2c03285c fix for NPE in FHIRPath engine 2021-08-27 10:40:43 +10:00
Grahame Grieve f926744ea7 adjust confusing language 2021-08-27 10:40:20 +10:00
Grahame Grieve 9f09724032 more FMM related extensions 2021-08-27 10:39:38 +10:00
Grahame Grieve 91fad51eec mark rendered narrative 2021-08-27 10:38:21 +10:00
markiantorno 99e85360d7 Updating version to: 5.4.12-SNAPSHOT and incrementing test cases dependency. 2021-08-25 23:38:16 +00:00
markiantorno 1b4c675c19 Release: v5.4.11
* Differential element fields minValue/maxValue are now correctly treated in the snapshot generation process
* Conversion context added to conversions process
* Users can now define custom behavior for CodeSystems, Extensions, BundleEntries, and Types by extending BaseAdvisor.
* Resource Conversions are now thread-safe, each using their own instance of the conversion context that is unique
* ConversionFactory classes are statically accessed, to minimize changes downstream
* I need to add more tests, there were very few to begin with, and it's my next task
* All conversion libraries and no play makes Mark a dull boy
* Exposed showMessagesFromReferences on the command line interface to support reporting validation errors on referenced types (particularly useful when validating messages & documents)
* https://github.com/hapifhir/org.hl7.fhir.core/issues/564
* https://github.com/hapifhir/org.hl7.fhir.core/issues/513
***NO_CI***
2021-08-25 23:10:46 +00:00
Mark Iantorno 94d88dd2d1
https://github.com/hapifhir/org.hl7.fhir.core/issues/447 (#576)
* https://github.com/hapifhir/org.hl7.fhir.core/issues/447

* fix tests

Co-authored-by: Grahame Grieve <grahameg@gmail.com>
2021-08-25 08:40:13 -04:00
Tadgh 5ca6d19c69
Replace proprietary notnull with javax.annotation.Nonnull (#584)
* Replace proprietary notnull with javax.annotation.Nonnull

* wip

Co-authored-by: markiantorno <markiantorno@gmail.com>
2021-08-25 08:39:44 -04:00
Grahame Grieve 1d5fb74fc6
Merge pull request #589 from hapifhir/gg-202108-dr-npe2
fix for #575 NPE in rendering Patient
2021-08-25 08:10:16 +10:00
Grahame Grieve 4ba9193a5e fix for #575 NPE in rendering Patient 2021-08-25 06:50:58 +10:00
Grahame Grieve 5ac31d11ac
Merge pull request #586 from hapifhir/gg-202108-vr-system
Gg 202108 vr system
2021-08-25 06:20:31 +10:00
Grahame Grieve fb0d90ad1f return system+code with display when validating 2021-08-24 17:03:33 +10:00
Grahame Grieve 9e7e6698bd fix DiagnosticReport rendering (NPEs) 2021-08-24 06:56:51 +10:00
Grahame Grieve b5723bab50
Merge branch 'master' into issue-555 2021-08-24 06:00:27 +10:00
Grahame Grieve aa5ab74003
Merge pull request #236 from ahdis/oe_xmlwriter_utf8_attr
XmlWriter for UTF-8 should not encode umlaut in attributes (elementmodel)
2021-08-24 05:55:28 +10:00
markiantorno 9a66c87a05 Updating version to: 5.4.11-SNAPSHOT and incrementing test cases dependency. 2021-08-19 02:59:51 +00:00
markiantorno 0853126597 Release: v5.4.10
* Conversion context added to conversions process
* Users can now define custom behavior for CodeSystems, Extensions, BundleEntries, and Types by extending BaseAdvisor.
* Resource Conversions are now thread-safe, each using their own instance of the conversion context that is unique
* ConversionFactory classes are statically accessed, to minimize changes downstream
* I need to add more tests, there were very few to begin with, and it's my next task
* All conversion libraries and no play makes Mark a dull boy
***NO_CI***
2021-08-19 02:26:11 +00:00
Louis Rolland daaa027f66 test: #555 Handling minValue/maxValue in generation snapshot process 2021-08-18 10:53:57 +02:00
jnmeijer 66b9e180e6
Improved performance of hashNWS (#570) (#573)
Co-authored-by: Jonathan Meijer <jonathan.meijer@telus.com>
2021-08-11 15:44:20 -04:00
Mark Iantorno a9abd8f824
https://github.com/hapifhir/org.hl7.fhir.core/issues/557 (#571) 2021-08-11 10:07:43 -04:00
Louis Rolland 0a3cc93c2f fix: #555 Handling minValue/maxValue in generate snapshot process 2021-08-11 10:08:45 +02:00
markiantorno 99fcac64ac Updating version to: 5.4.10-SNAPSHOT and incrementing test cases dependency. 2021-07-15 16:29:01 +00:00
markiantorno 296ab05f10 Release: v5.4.9
* Big refactoring of conversion code. First big step in being able to add conversion context.
* https://github.com/HL7/fhir-ig-publisher/issues/295
***NO_CI***
2021-07-15 15:57:12 +00:00
markiantorno c53cc54b96 Updating version to: 5.4.9-SNAPSHOT and incrementing test cases dependency. 2021-07-06 19:01:20 +00:00
markiantorno 1330ad7cf8 Release: v5.4.8
Fixed issue where validator fails to detect invariant issue when there are multiple profiles that use the same invariant on the same element. Also addressed issue revealed by the fix where the context resource wasn't being set properly when checking certain invariants (identified by one of the existing test cases).
***NO_CI***
2021-07-06 18:31:40 +00:00
markiantorno 1d7e8bf63d Updating version to: 5.4.8-SNAPSHOT and incrementing test cases dependency. 2021-07-05 17:01:20 +00:00
markiantorno c1adf78ed9 Release: v5.4.7
* Releasing to bring latest release up to Grahame's latest changes.
***NO_CI***
2021-07-05 16:01:31 +00:00
Grahame Grieve 4ccefc41c2 fix problems with logical models and type definitions on the root 2021-06-25 17:39:16 +10:00
Grahame Grieve 3e050853e4 hack workaround for bad SDC build: rebuild a particular profile when it's first used 2021-06-25 17:38:16 +10:00
Grahame Grieve 1897ee8661 Fix problem where validator calls R5 extensions invalid 2021-06-25 13:05:07 +10:00
markiantorno 887365e778 Updating version to: 5.4.7-SNAPSHOT and incrementing test cases dependency. 2021-06-24 19:44:46 +00:00
markiantorno aa0b7bc056 Release: v5.4.6
Validator:
* Fix problem importing x-version extensions with multiple targets
* fix bug validating profiles on bundle.entry.resource
* Fix loading issues with German translations (Unicode encoding problem)

Version Conversion:

* Round trip old questionnaires properly with R5 (item.type)

Other code changes:

* Fix up questionnaire rendering for old versions
* Add support for using https:// references to HL7 website
* Add support for using https:// references to HL7 website
* Add support for R4B to context
* update pubpack to v0.0.9
***NO_CI***
2021-06-24 19:18:37 +00:00
Grahame Grieve c827a06698 Fix problem importing x-version extensions with multiple targets 2021-06-24 21:45:01 +10:00
Grahame Grieve 8aa77b97cd Fix up Questionnaire rendering/conversion problem for R5 2021-06-24 21:44:13 +10:00
Grahame Grieve a2c6dd6af1 Add path and message tracking to element model 2021-06-23 20:35:15 +10:00
Grahame Grieve 91de7ec65b rework package info handling in IWorkerContext 2021-06-23 20:34:24 +10:00
Grahame Grieve 1aaf086c55 Fix wrong profile error message + NPE prevention 2021-06-21 15:32:06 +10:00
markiantorno e68b5857b1 Updating version to: 5.4.6-SNAPSHOT and incrementing test cases dependency. 2021-06-17 22:28:48 +00:00
markiantorno 02e761c3dc Release: v5.4.5
* Fix validation bug on Canonical references
***NO_CI***
2021-06-17 21:59:19 +00:00
markiantorno dd49561bd7 Updating version to: 5.4.5-SNAPSHOT and incrementing test cases dependency. 2021-06-17 09:06:05 +00:00
markiantorno 952db0248a Release: v5.4.4
Validator:

* Add support for $index on aggregators in FHIRPath
* don't fail with an exception if an unknown resource type appears in contained resource
* improved validation for some value sets that are based on unknown code systems
* add the -verbose parameter, and add additional verbose messages
* CDA: Fix erroneous type validation on CDA templates

Conversion code:

* Ignoring abatementBoolean when converting from dstu2 to r4

Snapshot generator:

* CDA: Suppress erroneous "Expansion" text appearing in view
* CDA: Don't delete binding information in snapshot for CDA bindable data types

Other code changes:

* Fix rendering of slices so type on slicer is not hidden
* Fix rendering for most resources - remove empty tables (e.g. text element, that shouldn't render)
* Fix NPE rendering code systems with some kinds of properties
* Improve rendering of questionnaires (icons, option sets)
* Rendering: add support for CodeableReference
* Rendering: Support binding mode and XML element information
***NO_CI***
2021-06-17 08:33:35 +00:00
Grahame Grieve d67cecc83f * CDA: Fix erroneous type validation on CDA templates
* CDA: Suppress erroneous "Expansion" text appearing in view
* CDA: Don't delete binding information in snapshot for CDA bindable data types
* Rendering: add support for CodeableReference
* Rendering: Support binding mode and XML element information
2021-06-17 16:55:15 +10:00
Grahame Grieve 45801c1918 improve questionnaire rendering 2021-06-16 12:15:03 +10:00
Grahame Grieve a777ab53a8 Fix rendering for most resources - remove empty tables (e.g. text element, that shouldn't render) 2021-06-16 07:20:37 +10:00
Grahame Grieve 8088cedb66 add the -verbose parameter, and add additional verbose messages 2021-06-15 08:51:47 +10:00
Grahame Grieve e3cf0afec2 improved validation for some value sets that are based on unknown code systems 2021-06-15 08:50:27 +10:00
Grahame Grieve 7d512d6ed0 Fix NPE rendering code systems with some kinds of properties 2021-06-15 08:49:08 +10:00
Grahame Grieve 435e0261e0 don't fail with an exception if an unknown resource type appears in contained resource 2021-06-15 08:48:19 +10:00
Grahame Grieve 0c609448f4 Fix rendering of slices so type on slicer is not hidden 2021-06-15 08:38:01 +10:00
Grahame Grieve f51c7115ce Add support for $index on aggregators in FHIRPath 2021-06-15 08:25:59 +10:00
markiantorno e5d2cf0f9c Updating version to: 5.4.4-SNAPSHOT and incrementing test cases dependency. 2021-06-05 01:16:45 +00:00
markiantorno eb2d0a499a Release: v5.4.3
Validator:
* Add NL translations
* Fix validation of extensions on patterns
* Validation of cardinality on address-line elements containing pattern elements fixed
* Ensure that validator creates errors on example urls by default
* Add -allow-example-urls option to the validator
* Fixed issue where when validating with no terminology server and a value set with only an expansion (no compose), the 'inferred' code system wasn't being populated and validation was then failing on a coding with no specified code system
* when validating value sets, use CodeSystem/$validate-code not ValueSet/$validate-code

Version Conversion Fixes:
* add copying of aggregation mode for conversion from 50 to 30
* add test for Observation conversion from 10 to 40
* add procedures conversion form dstu2 to r4
* add medication conversion from dstu2 to r4
* fix obscure issue converting discriminators from R2B to R4/5

Code Changes:
* Adding Maven exec to test validation cli jar
* Add SIDUtilities and clean up SID handling code across the code base
* fix rendering bug on references
***NO_CI***
2021-06-05 00:50:10 +00:00
Grahame Grieve 6c8f5d4c47
Merge pull request #526 from lmckenzi/Vocab-validation-with-expansion-only
Fixed issue where when validating with no terminology server and a va…
2021-06-05 08:21:48 +10:00
Lloyd McKenzie 3c543b72ce Updated to handle recursion on expansion.contains 2021-06-04 13:18:27 -06:00
Grahame Grieve 4f5d056ec5 Fix rendering bug + make nl properties UTF-8 2021-06-04 23:18:26 +10:00
Grahame Grieve a371f5fe3e Add -allow-example-urls option to the validator 2021-06-02 17:45:50 +10:00
Lloyd McKenzie c11312de78 Fixed issue where when validating with no terminology server and a value set with only an expansion (no compose), the 'inferred' code system wasn't being populated and validation was then failing on a coding with no specified code system 2021-06-01 23:35:58 -06:00
Grahame Grieve 12f841999e Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2021-05-31 08:53:45 +10:00
Grahame Grieve 2e640accce
Merge pull request #498 from pieter-edelman-nictiz/497
Issue #497: turn on single line mode for FHIRPath matches()
2021-05-31 08:51:26 +10:00
Grahame Grieve 8c9e54d58f fix error calling the wrong validation method 2021-05-31 08:03:52 +10:00
markiantorno d91a4bbb03 Updating version to: 5.4.3-SNAPSHOT and incrementing test cases dependency. 2021-05-21 18:14:31 +00:00
markiantorno 552ef55ada Release: v5.4.2
* Rolling back HAPI dependency so we can build and publish
***NO_CI***
2021-05-21 17:42:50 +00:00
markiantorno 5648f7a925 Updating version to: 5.4.2-SNAPSHOT and incrementing test cases dependency. 2021-05-19 18:42:31 +00:00
markiantorno 52169f00ba Release: v5.4.1
* update so I can push a new validator
***NO_CI***
2021-05-19 18:15:50 +00:00
markiantorno 41f2fe7626 MAGIC BUILD FIXING WIZARDY 2021-05-19 11:03:57 -04:00
jamesagnew 9b829d9714 Version bump to 5.4.0 for release 2021-05-18 16:55:09 -04:00
markiantorno f082ed15ee Updating version to: 5.3.15-SNAPSHOT and incrementing test cases dependency. 2021-05-14 15:05:25 +00:00
markiantorno d17a8da923 Release: v5.3.14
Validator:

* Added parameter -want-invariants-in-messages
* fix issue with dependencies on IGs that have uppercase in package IDs

Other Code Changes

* Fix displays for some codes in ConceptMap.relationship when rendering
* Add Publication Version to rendering context for future use.
***NO_CI***
2021-05-14 14:32:48 +00:00
Pieter Edelman 783ad9b850 Issue #497: turn on single line mode for FHIRPath matches() 2021-05-14 15:58:03 +02:00
markiantorno 857e504315 upping version for release 2021-05-14 09:37:04 -04:00
Grahame Grieve 278916ba97 Fix displays for some codes in ConceptMap.relationship when rendering + Add Publication Version to rendering context for future use. 2021-05-14 12:24:57 +10:00
Grahame Grieve cf859c9ed1 add new parameter for whether to include FHIRPath in invariant error messages 2021-05-14 12:21:28 +10:00
markiantorno baf81057a8 Updating version to: 5.3.13-SNAPSHOT and incrementing test cases dependency. 2021-05-13 19:12:04 +00:00
markiantorno a20d84bf2b Release: v5.3.12
* Update core R5 code to v4.6.0 (breaking changes to questionnaire, concept map, and other resources that are less important to core)
* Fix compartment definitions of ListResource.source and subject for R3 and R4
* Snapshot generator: fix problem checking types on logical models
* Do not flag internal references as suspicious
* XMLParser allows passing a schema location
* XMLParser allows passing a schema location
* Issue 484 https://github.com/hapifhir/org.hl7.fhir.core/issues/484
* Adding Kotlin to the build process
* random cleaning up in convertors
* Adding version option to ignore bundle entry in conversion advisors
* Validator: Load code systems from known packages on the fly
* Validator: better handle invalid v3 dates
* Renderer: Render OperationDefinition.InputProfile and OutputProfile
* Important: Allow more valid schemas for Utilities.isAbsoluteUrl
* Validator: remove notes about extensible bindings if profile extensible binding is valid
***NO_CI***
2021-05-13 18:41:58 +00:00
Grahame Grieve 154ac5c3ca
Merge branch 'master' into gg-202105-bugfixes-2 2021-05-07 18:30:26 +10:00
Grahame Grieve 4e173f4715 * Validator: Load code systems from known packages on the fly
* Validator: better handle invalid v3 dates
* Renderer: Render OperationDefinition.InputProfile and OutputProfile
* Important: Allow more valid schemas for Utilities.isAbsoluteUrl
* Validator: remove notes about extensible bindings if profile extensible binding is valid
2021-05-07 18:29:21 +10:00
Grahame Grieve c56b7b67c8
Merge branch 'master' into gg-202105-version-conversion-1 2021-05-05 14:10:12 +10:00
Grahame Grieve b13b4932f9 XMLParser allows passing a schema location 2021-05-05 12:17:02 +10:00
Grahame Grieve c6f392b7e0 #466: fix problem checking types on logical models 2021-05-05 09:54:22 +10:00
Mark Iantorno f14ef6d83f
Issue 484 (#485)
* added Integer argument constructor for IntegerType class.

* Updating release notes
2021-05-04 11:21:57 -04:00
Grahame Grieve 898665f356 fixes for #483: Quantity subclasses copy() functions not all transferring values 2021-05-04 12:43:07 +10:00
Grahame Grieve 11a727b40f update R5 to 4.6.0 2021-05-04 09:03:13 +10:00
markiantorno fb6f420df0 Updating version to: 5.3.12-SNAPSHOT and incrementing test cases dependency. 2021-04-22 05:47:40 +00:00
markiantorno 33fffe28ff Release: v5.3.11
Terminology: Ensure that CVX uses tx.fhir.org, not UTG definitions which are wrong
Validator: Fix problems with Bundle validation for ids in collections and add additional search related validation
Validator: Remove check on ElementDefinition.id for R2B
***NO_CI***
2021-04-22 05:15:09 +00:00
Grahame Grieve 1c320586e5 Ensure that CVX uses tx.fhir.org, not UTG definitions which are wrong + Fix problems with Bundle validation for ids in collections and add additional search related validation + Remove check on ElementDefinition.id for R2B 2021-04-22 13:27:32 +10:00
markiantorno ba29b1907c Updating version to: 5.3.11-SNAPSHOT and incrementing test cases dependency. 2021-04-21 17:20:12 +00:00
markiantorno 3eb3788597 Release: v5.3.10
* Breaking Change: Fix issue where primitive elements with required bindings must have a value, but this wasn't be checked
* Fix bug with value set imports not working
* Fix bug with base definitions not working properly for logical models
* Better memory tracking for validator
* Get code generator compiling
***NO_CI***
2021-04-21 16:47:39 +00:00
Grahame Grieve 7d2df18fb9 Better memory tracking for validator 2021-04-21 17:40:42 +10:00
Grahame Grieve 78ab95ff1c fix bug with base definitions not working properly for logical models 2021-04-21 17:38:54 +10:00
Grahame Grieve 3f219b7550 Fix bug with value set imports not working 2021-04-21 17:38:21 +10:00
markiantorno ba18e1c11a Updating version to: 5.3.10-SNAPSHOT and incrementing test cases dependency. 2021-04-12 20:34:20 +00:00
markiantorno 265e2cebfe Release: v5.3.9
* fix R2B for checking resource IDs
* Properly check code validity when an expansion is provided, but the code system is unknown
* fix problem with R2B StructureDefinition transform
* Improve validator performance
* Add support for forthcoming release
***NO_CI***
2021-04-12 19:29:28 +00:00
Grahame Grieve b71d80e201 Add support for new FHIR version 2021-04-13 05:00:09 +10:00
Grahame Grieve a10fdb13e3 validation optimisation 2021-04-12 11:22:43 +10:00
Grahame Grieve 50642db412 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2021-04-02 06:24:53 +11:00
Grahame Grieve 11f66836ed fix for R2B validation of resource ids, and problems validating codes 2021-04-02 06:24:43 +11:00
markiantorno 1b20105d01 Updating version to: 5.3.9-SNAPSHOT and incrementing test cases dependency. 2021-04-01 18:56:04 +00:00
markiantorno 2821883888 Release: v5.3.8
* adding fix for R4 when target profile is a reference, and that reference returns an empty list of target profiles
***NO_CI***
2021-04-01 18:25:42 +00:00
markiantorno 91e31e813f Updating version to: 5.3.8-SNAPSHOT and incrementing test cases dependency. 2021-03-29 08:04:39 +00:00
markiantorno 671a3bbfe9 Release: v5.3.7
Version Conversion:
* add test for Observation conversion from 10 to 40
* add procedures conversion form dstu2 to r4
* add medication conversion from dstu2 to r4
* add copy of extension field for Enumeration fieldtype by Resource.copy
* add default value to Medication Request during conversion from dstu2 to r4
* fix R2B/R5 ElementDefinition.type.code conversion

Other:
* minor fixes in code generators for R4B
* Fix null pointer exception in validator validating language codes
* fix issue with validating fixed values for primitive elements
* add utility to unzip file
***NO_CI***
2021-03-29 07:37:14 +00:00
Grahame Grieve 4e4885dc7d Fix null pointer exception in validator validating language codes 2021-03-29 13:35:51 +11:00
Grahame Grieve 30be8a0dc1
Merge branch 'master' into issue_438 2021-03-29 09:08:04 +10:00
Grahame Grieve eecf74576f
Merge pull request #461 from realizm/master
Fixing exception when validation issues #458
2021-03-29 08:54:47 +10:00
Grahame Grieve f43769c6e5 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2021-03-22 08:57:21 +11:00
markiantorno c119fdfa42 Updating version to: 5.3.7-SNAPSHOT and incrementing test cases dependency. 2021-03-19 23:40:41 +00:00
markiantorno e6b2b98ff9 Release: v5.3.6
* URI type issue temporary fix for github issue #240 (QA Error related Extension.url)
***NO_CI***
2021-03-19 23:09:48 +00:00
Grahame Grieve dc767031e5 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2021-03-18 09:32:30 +11:00
realizm 043ceb2074 Fixing exception when validation issues #458
Resolves: #458
2021-03-17 09:31:08 +09:00
Grahame Grieve 5187fdd398 fix issues related to R4B generation 2021-03-12 06:28:56 +11:00
markiantorno 48a91c70af Updating version to: 5.3.6-SNAPSHOT and incrementing test cases dependency. 2021-03-10 15:15:06 +00:00
markiantorno 06a61930b2 Release: v5.3.5
* minor fixes in code generators for R4B
***NO_CI***
2021-03-10 14:40:44 +00:00
Grahame Grieve 7c48c0d66a
Gg 20201mar r4b 3 (#454)
* fix bug generating htmlized XML with no namespaces

* Add R4B support to FHIRVersions

* Add resource name mapping for DataRequirement

* R4B fixes

* release notes
2021-03-10 09:08:09 -05:00
Grahame Grieve 67d3ab72e3 R4B fixes 2021-03-10 21:44:42 +11:00
Grahame Grieve 5e391eeace Add R4B support to FHIRVersions 2021-03-06 08:58:04 +11:00
markiantorno 0dc44571e6 Updating version to: 5.3.5-SNAPSHOT and incrementing test cases dependency. 2021-03-03 23:12:04 +00:00
markiantorno 7be165d2d2 Release: v5.3.4
* fix bug in profile validation
***NO_CI***
2021-03-03 22:40:23 +00:00
markiantorno 622ad5f207 Updating version to: 5.3.4-SNAPSHOT and incrementing test cases dependency. 2021-03-03 15:27:46 +00:00
markiantorno 078da2f71a Release: v5.3.3
* adding session ids to validator service
* fix R5 --> R4 conversion for ConceptMap equivalence default value
* fix issue with snapshot generation for logical models (CCDA)
* Define binding method extension
* Improve terminology validation error messages
* add additional validation on profiles around types (for logical models)
***NO_CI***
2021-03-03 14:56:38 +00:00
Grahame Grieve a25f17a916 Define binding method extension 2021-03-03 13:24:39 +11:00
Grahame Grieve a51a8c003d fix issue with snapshot generation for logical models (CCDA) 2021-03-03 13:18:44 +11:00
Grahame Grieve 5364606cb5
Merge pull request #444 from hapifhir/issue-441
Issue #441 - problem with value set validation when value set doesn't…
2021-02-24 16:27:59 +11:00
Grahame Grieve cdbca15a7a Issue #441 - problem with value set validation when value set doesn't have a version 2021-02-24 15:03:03 +11:00
markiantorno f08f4aec85 Updating version to: 5.3.3-SNAPSHOT and incrementing test cases dependency. 2021-02-18 23:31:07 +00:00
markiantorno 7e70adf819 Release: v5.3.2
* Rollback HAPI dependency to fix fat-jar for Validator-CLI
***NO_CI***
2021-02-18 22:57:43 +00:00
palanm a3e003740a fixing crlf to lf 2021-02-17 14:13:37 -08:00
markiantorno 5cede7a6b0 Updating version to: 5.3.2-SNAPSHOT and incrementing test cases dependency. 2021-02-17 19:58:37 +00:00
palanm cc03acb3c3 Junit test for Copy method 2021-02-17 11:32:18 -08:00
markiantorno 86b0af4895 Release: v5.3.1
* add test for Observation conversion from 10 to 40
* add procedures conversion form dstu2 to r4
* add medication conversion from dstu2 to r4
***NO_CI***
2021-02-17 19:23:40 +00:00
jamesagnew 4d8b564504 Version bump to 5.3.1-SNAPSHOT 2021-02-17 07:31:19 -05:00
jamesagnew c1fca83a94 Version bump to 5.3.0 2021-02-17 06:59:11 -05:00
palanm c8fa589baa Added the copying of "extension" fiels 2021-02-16 17:27:53 -08:00
Mark Iantorno c422ddc388
Refactoring validator engine (#436)
* Initial commit, tests passing

* continuing breaking up massive classes
2021-02-15 16:48:40 -05:00
Lloyd McKenzie d0df12b85f Revert to current content on HAPI 2021-02-08 08:40:11 -07:00
Lloyd McKenzie b91b68d1a2 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core
# Conflicts:
#	org.hl7.fhir.convertors/pom.xml
#	org.hl7.fhir.dstu2/pom.xml
#	org.hl7.fhir.dstu2016may/pom.xml
#	org.hl7.fhir.dstu3/pom.xml
#	org.hl7.fhir.r4/pom.xml
#	org.hl7.fhir.r5/pom.xml
#	org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/conformance/ProfileUtilities.java
#	org.hl7.fhir.report/pom.xml
#	org.hl7.fhir.utilities/pom.xml
#	org.hl7.fhir.utilities/src/main/resources/Messages.properties
#	org.hl7.fhir.validation.cli/pom.xml
#	org.hl7.fhir.validation/pom.xml
#	org.hl7.fhir.validation/src/main/java/org/hl7/fhir/validation/instance/InstanceValidator.java
#	pom.xml
2021-02-08 08:22:58 -07:00
Grahame Grieve 82edacbde4
Merge pull request #434 from hapifhir/gg-2021-feb-1
Gg 2021 feb 1
2021-02-08 13:28:31 +11:00
Grahame Grieve ef3b8c1f0a Fix bug validating mime types without terminology serverBase (warning, not error)
Performance improvements in JSON metadata based parser
Add first round of supplement validation
improve error message on profile validation fail
fix NPE validating some slices
fix bug validating canonicals as part of choice data types
Adds special support for http://hl7.org/fhirpath/System.* types
fix bug matching slices in contained resources that have references to #
2021-02-08 09:40:25 +11:00
Grahame Grieve 8fac290ebe #426 - fix serialization of NULL enumerations 2021-02-08 09:33:36 +11:00
Grahame Grieve c95b07f0f1 #426 - fix serialization of NULL enumerations 2021-02-08 09:32:06 +11:00
Grahame Grieve da563a6637
Merge pull request #411 from ahdis/oe_fhir-28413
[FHIR-28413]: noNamespace instead of default for Logical Models not having a namespace
2021-02-08 06:46:30 +11:00
Jonathan Percival 4b416ee5f4 Use FHIRPathEngine where possible 2021-01-27 10:30:45 -07:00
markiantorno 82546c5764 Updating version to: 5.2.21-SNAPSHOT and incrementing test cases dependency. 2021-01-25 15:02:01 +00:00
markiantorno af05868a82 Release: v5.2.20
* Added OkHttp dependency to cli
***NO_CI***
2021-01-25 14:28:05 +00:00
markiantorno de30f3d212 Updating version to: 5.2.20-SNAPSHOT and incrementing test cases dependency. 2021-01-24 16:59:11 +00:00
markiantorno 5c4a309538 Release: v5.2.19
* added OkHttp dependency to validator to fix issue
***NO_CI***
2021-01-24 16:26:27 +00:00
markiantorno d13b5dce94 Updating version to: 5.2.19-SNAPSHOT and incrementing test cases dependency. 2021-01-21 23:50:48 +00:00
markiantorno fb6f25c24e Release: v5.2.18
* This is a test to see if triggering a change on a branch will still allow me to deploy to Sonatype
* This is a second test message
***NO_CI***
2021-01-21 22:05:34 +00:00
Mark Iantorno 75a938f24f
marking okhttp dependency as optional in r5 (#421) 2021-01-21 14:13:51 -05:00
markiantorno b7b979dc1e upping version 2021-01-20 16:14:00 -05:00
Grahame Grieve ecc59f26a6
Merge pull request #418 from hapifhir/gg-r4b-work
Gg r4b work
2021-01-21 07:13:43 +11:00
Grahame Grieve ccf82b8ee3 Add parseAndClose to close streams automatically + minor fixes to support R4B 2021-01-20 16:54:31 +11:00
Grahame Grieve 00410604d7 Improve validator error messages for bad json & turtle formats 2021-01-20 16:53:14 +11:00
markiantorno 8a69438532 Updating version to: 5.2.17-SNAPSHOT and incrementing test cases dependency. 2021-01-14 22:38:02 +00:00
markiantorno f815bc8fb8 Release: v5.2.16
Validation Changes:
* No change

Other code changes:
* update dependency on CQF framework
* Add primitive type factory
* minor changes to fix ContentReference issues
***NO_CI***
2021-01-14 22:02:50 +00:00
Grahame Grieve 026a958e39 fix build 2021-01-15 08:13:30 +11:00
markiantorno 564f8357d8 Release: v5.2.15
Validation Changes:
* No change

Other code changes:
* update dependency on CQF framework
* Add primitive type factory
* minor changes to fix ContentReference issues
***NO_CI***
2021-01-14 18:29:48 +00:00
Grahame Grieve d92935894a fix problem with references 2021-01-14 13:34:34 +11:00
Grahame Grieve 414640550e Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2021-01-14 12:21:52 +11:00
Grahame Grieve e0dabe6f33 fix profile generation issues 2021-01-14 12:21:33 +11:00
Grahame Grieve 9bdd663497 makeshareable changes 2021-01-14 12:19:14 +11:00
Grahame Grieve fa7341ca44 add primitive type factory 2021-01-14 12:18:17 +11:00
Mark Iantorno 33b55727a0
upping version to fix crash (#413) 2021-01-12 11:21:28 -05:00
Oliver Egger c16573962b noNamespace instead of default 2021-01-02 14:19:04 +01:00
Oliver Egger 47722ef63c windows test fix 2021-01-02 13:08:01 +01:00
Oliver Egger 21479bffa7 don't escape umlaut in utf8 2021-01-02 13:08:01 +01:00
markiantorno 3ab5444dca Updating version to: 5.2.14-SNAPSHOT and incrementing test cases dependency. 2020-12-24 05:15:27 +00:00
markiantorno 5f67b5bad0 Release: v5.2.13
Validator:
* More rules around URL validation, instead of just marking them as errors
* Don't report errors for extensible bindings when profiles apply required bindings

Other code changes:
* fix rendering issue with profile references
* only use c:\temp for logs if it's writeable
***NO_CI***
2020-12-24 04:44:49 +00:00
Grahame Grieve 3ba81328cc * More rules around URL validation, instead of just marking them as errors
* Don't report errors for extensible bindings when profiles apply required bindings
* fix rendering issue with profile references
* only use c:\temp if it's writeable
2020-12-24 13:21:30 +11:00
markiantorno 401b73c700 Updating version to: 5.2.13-SNAPSHOT and incrementing test cases dependency. 2020-12-18 13:38:06 +00:00
markiantorno fa2a8ad4e2 Release: v5.2.12
Validator:
* allow for URLs that are references to ISO standards (urn:std:)
* fix up validation of value set for code system and expansions
* fix up validation for R2B issues (value set references, profiled types)
***NO_CI***
2020-12-18 13:03:18 +00:00
Grahame Grieve 40642c2263 don't make non-url uris into invalid links 2020-12-17 13:05:50 +11:00
markiantorno ff49147146 Updating version to: 5.2.12-SNAPSHOT and incrementing test cases dependency. 2020-12-15 13:19:59 +00:00
markiantorno 9084ea3881 Release: v5.2.11
Validator:
* fix bad eror message in german messages (issue 399)
* better error messages when FHIRPath discriminators are invalid
* clean up error messages

Other code changes:
* remove unnecessary (& problem causing) Fragment-Host from OSGi manifest
* move structuremap utilities to a package

***NO_CI***
2020-12-15 12:50:35 +00:00
Grahame Grieve b43431a65c
Merge pull request #401 from hapifhir/gg-fix-slicing-errors
improve error message for FHIRPath errors when slicing
2020-12-15 14:27:08 +11:00
Mark Iantorno 3d3bda30ec
Code changes to assist with validator updates in HAPI (#400)
* just some cleanup and simple changes

* changed folder name the map is currently structured, not in the past
2020-12-10 10:56:56 -05:00
Grahame Grieve e2a8581a3b improve error message for FHIRPath errors when slicing 2020-12-10 13:50:20 +11:00
markiantorno 55055fa3c4 Updating version to: 5.2.11-SNAPSHOT and incrementing test cases dependency. 2020-12-09 01:50:11 +00:00
markiantorno 0019153a26 Release: v5.2.10
Validator:
* Fix NPE reading results of batch code validation
* Validate that binding references are present, and are for value sets
* Fix output message when there's nothing to validate

Other Code Changes:
* fix for renderer on ElementModels rendering - follow contentReference
* fix for NPE rendering references to contained value setes in Questionnaires that don't resolve
* fix for NPE rendering parameters with no names
* fix for rendering bundles on ElementModels

***NO_CI***
2020-12-09 01:21:17 +00:00
Grahame Grieve 4b5ea7d4d5 Actually fix it this time 2020-12-09 11:10:16 +11:00
Grahame Grieve 0cf371c657 fix for rendering bundles on ElementModels 2020-12-09 10:11:06 +11:00
Grahame Grieve 8a6b797c92 fix for NPE rendering parameters with no names 2020-12-09 10:10:11 +11:00
Grahame Grieve 655c072d64 fix for NPE rendering references to contained value setes in Questionnaires that don't resolve 2020-12-09 10:09:02 +11:00
Grahame Grieve 752918a80a fix for renderer on ElementDefinition rendering - follow contentReference 2020-12-09 10:08:01 +11:00
Grahame Grieve 2c4b4c4ca2 Fix NPE reading results of batch code validation 2020-12-09 10:04:56 +11:00
markiantorno c85cbf59aa Updating version to: 5.2.10-SNAPSHOT and incrementing test cases dependency. 2020-12-06 22:30:20 +00:00
markiantorno 6907a004be Release: v5.2.9
Validator:

* fix bug that meant validator was complaining abut unknown codes

Other code changes:

* fix rendering of documents
***NO_CI***
2020-12-06 22:00:23 +00:00
markiantorno 1651d3775c upping version to publish 2020-12-05 09:45:13 -05:00
markiantorno b6efb58dc8 Release: v5.2.8
Validator:

* fix bug that meant validator was complaining abut unknown codes

Other code changes:

* fix rendering of documents
***NO_CI***
2020-12-05 00:07:37 +00:00
Grahame Grieve 3f9c87ab63
validation fixes (#397)
* Fix validation issues for StructureDefinitions

* Don't try to validate URLs outside HL7 space

* Fix document rendering

* fix failing tests
2020-12-04 16:13:53 -05:00
Grahame Grieve 7de14f172e
Fix validation issues for StructureDefinitions (#396) 2020-12-04 16:11:52 -05:00
Lloyd McKenzie d8df660c33 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2020-12-04 08:05:48 -07:00
markiantorno 118c03590f Updating version to: 5.2.8-SNAPSHOT and incrementing test cases dependency. 2020-12-03 22:12:42 +00:00
markiantorno d4e5950dea Release: v5.2.7
Validator:
* Fix support for cross version extensions across the entire valdation rule set
* Improve security warnings about rogue HTML tags
* fix error messages on unknown URLs (not longer say 'not done yet')
* fix validation of profiles and target profiles in all versions (before R3 different rules)

Other code changes:
* fix error message suppression on tooling client
* Track code systems used in the context
* improve error messages when rendering bundles that are documents that aren't properly formed
* Process Markdown when rendering CapabilityStatement.rest.documentation
* Fix rendering of CanonicalResource.url

Quality of Life Improvements:
* fixed deployment issue where validator.cli and report packages were sometimes published during deployment
***NO_CI***
2020-12-03 21:36:56 +00:00
markiantorno 22e203bd13 bumping version to fix publishing issues 2020-12-03 09:45:35 -05:00
markiantorno ff00680f94 Release: v5.2.6
Validator:
* Fix support for cross version extensions across the entire valdation rule set
* Improve security warnings about rogue HTML tags
* fix error messages on unknown URLs (not longer say 'not done yet')
* fix validation of profiles and target profiles in all versions (before R3 different rules)

Other code changes:
* fix error message suppression on tooling client
* Track code systems used in the context
* improve error messages when rendering bundles that are documents that aren't properly formed
* Process Markdown when rendering CapabilityStatement.rest.documentation
* Fix rendering of CanonicalResource.url
***NO_CI***
2020-12-03 10:37:47 +00:00
Grahame Grieve f7ececa034
Merge branch 'master' into gg_v5.2.6 2020-12-03 17:16:28 +11:00
Grahame Grieve 36dae96eef fix copmile problem 2020-12-03 15:23:03 +11:00
Grahame Grieve 89249219fd Fix rendering of CanonicalResource.url 2020-12-03 12:55:20 +11:00
Grahame Grieve 1f2859e49b Process Markdown when rendering CapabilityStatement.rest.documentation 2020-12-03 12:54:39 +11:00
Grahame Grieve 1372d58ad4 improve error messages when rendering bundles that are documents that aren't properly formed 2020-12-03 12:54:03 +11:00
Grahame Grieve 532aba2485 cache xversion extension manager, and use it in any place accessing extension definitions 2020-12-03 12:52:43 +11:00
Grahame Grieve 4b43e46d11 Track code systems used in the context, and add getSpecUrl for implementer ease 2020-12-03 12:49:00 +11:00
Grahame Grieve b9664caec0 fix error message suppression on tooling client 2020-12-03 12:46:43 +11:00
azizjonh c4139ae9a1
Load context from classpath allowing duplicates
Added ability to specify whether to allow duplicates when loading context from classpath. In similar fashion to loading from package.
2020-12-01 11:05:57 -06:00
markiantorno 2dff99e99b Updating version to: 5.2.6-SNAPSHOT and incrementing test cases dependency. 2020-12-01 12:33:00 +00:00
markiantorno e83853b691 Release: v5.2.5
Validator:
* Add new validation to check these words in R3+: "Except for transactions and batches, each entry in a Bundle must have a fullUrl which is the identity of the resource in the entry"

Other code changes:
* Fix bug in package loader - allow loading version with later patch if old version is missing
***NO_CI***
2020-12-01 11:58:45 +00:00
Grahame Grieve 2d8ac6f377 fix bug in bundle rendering 2020-11-30 17:58:50 +11:00
Grahame Grieve bdf783e9e0 improve cahcing on client and also txServer 2020-11-30 17:58:29 +11:00
markiantorno 1c043b5cc5 Updating version to: 5.2.5-SNAPSHOT and incrementing test cases dependency. 2020-11-28 16:04:03 +00:00
markiantorno 9f3d6ccd4d Release: v5.2.4
* Removed logs from network calls
* Added back in help file display
* Avoiding checking ssl certs for build server, this needs to be fixed and should not be left in long term
***NO_CI***
2020-11-28 15:32:26 +00:00
Mark Iantorno 9913168321
Pay no attention to the man behind the curtain (#388)
* added back in help file, and removed network logging

* avoid checking ssl certs for build server

* fixing help file loading from cli jar
2020-11-28 09:47:19 -05:00
markiantorno 3e7bd73109 Updating version to: 5.2.4-SNAPSHOT and incrementing test cases dependency. 2020-11-27 16:34:04 +00:00
markiantorno 59843aaa49 Release: v5.2.3
Validator Changes:
* no effective changes
* fix issue for content references in versions before R3
* Add on the fly retrieval of profiles in the validator
* Fix bug where validator reported 'not done yet' for invalid contained references
* Fix for wrong reference to Any in cross version extensions

Other Code Changes:
* fix bug converting type mode in Structure Map
* fix bug converting Timing.when (issue 383)
* fix bug doing date time comparisons with seconds in FHIRPath
* Add support for instance-name and instance-description extensions
* Fix for bundle renderer trying to render resources from the wrong version

***NO_CI***
2020-11-27 16:04:33 +00:00
markiantorno 1466620418 version update so it publishes correctly. 2020-11-27 10:19:29 -05:00
Grahame Grieve d4087590bf
hopefully final prep for 5.2.2 (#387)
* Add on the fly retrieval of profiles in the validator, and fix bug where validator reported 'not done yet' for invalid contained references.

* fix loading issue for content references in versions before R3

* fix content resolution issue for versions from before 3

* Fix for bundle renderer trying to render resources from the wrong version

* Fix for wrong reference to Any in cross version extensions

* fix test case reference

* fix mistake generating snapshots around element ids

* fix tests
2020-11-27 09:20:49 -05:00
Mark Iantorno 3e1e00b37d
all IOExceptions are now passed up and not handled within the HTTP library. (#386) 2020-11-26 17:29:02 -05:00
markiantorno 830e9e3cc4 Release: v5.2.2
Validator Changes:
* no effective changes

Other Code Changes:
* fix bug converting type mode in Structure Map
* fix bug converting Timing.when (issue 383)
* fix bug doing date time comparisons with seconds in FHIRPath
* Add support for instance-name and instance-description extensions
***NO_CI***
2020-11-26 07:41:03 +00:00
Grahame Grieve 8f68c79554 Fix date time comparison code 2020-11-26 08:53:59 +11:00
Grahame Grieve 40b644adf1 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2020-11-26 06:50:35 +11:00
markiantorno 7adfefa635 Updating version to: 5.2.2-SNAPSHOT and incrementing test cases dependency. 2020-11-24 16:05:34 +00:00
markiantorno b7d683fe1b Release: v5.2.1
* Fix for issue 373
* Fix for issue 381
* Fix for issue 204
* Internal tools now use OkHttp library for all resource fetching
* Added testing for network tools
***NO_CI***
2020-11-24 15:33:30 +00:00
Mark Iantorno 7e5a670846
Http client update (#378)
* wip

* tests all pass with log outputs identical to original...is it better now? I don't know.

* proxy works, adding a test and docs next

* more cleanup and test fixes

* left in testing file

* didn't need that code anymore
2020-11-24 09:20:43 -05:00
Grahame Grieve 666c3c7aad Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2020-11-24 06:29:53 +11:00
Mark Iantorno 9ffa3f7015
upping version number to correspond with latest HAPI NUMBAT release (#382) 2020-11-18 15:51:16 -05:00
Grahame Grieve b7d3f36f86 fix package loading issues 2020-11-18 21:05:16 +11:00
Lloyd McKenzie 7064b70712 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2020-11-14 13:27:22 -07:00
markiantorno f4ca5aebe5 Updating version to: 5.1.23-SNAPSHOT and incrementing test cases dependency. 2020-11-13 05:35:44 +00:00
markiantorno 10859ee2bf Release: v5.1.22
Validator:
* Fix bug in unknown URL handling that could cause significant delays in validation (>1min / unknown URL)
* fix bug in processing excludes with filters in value sets

Other code changes:
* fix case problem with icons in questionnaire rendering
* fix problem with rendering nested slices on content references
* fix rendering on must-support view for must-support on types and target profiles
***NO_CI***
2020-11-13 05:09:25 +00:00
Grahame Grieve 6ef8565563 fix rendering on must-support view for must-support on types and target profiles 2020-11-13 14:46:57 +11:00
Grahame Grieve 25103f3653 * fix case problem with icons in questionnaire rendering 2020-11-13 14:43:11 +11:00
Grahame Grieve 74db1523c5 fix bug in processing excludes with filters in value sets 2020-11-13 14:41:45 +11:00
markiantorno e85f66fddb Updating version to: 5.1.22-SNAPSHOT and incrementing test cases dependency. 2020-11-11 02:03:27 +00:00
markiantorno 5b62d35f71 Release: v5.1.21
Validator:
* fix problem with min getting set to 1 on slices.
* fix problem with element definition resolution in profiles for contentReference
* don't apply warning about reference content when it's used as a pattern

Other code changes:
* fix problem with rendering unchanged terminology bindings in profiles
* fix problem rendering canonical URLs with | in them
* fix problem rendering multiple manifestations for an allergy reaction
* fix for NPE in version string comparison
* add styling when adding markdown to table
***NO_CI***
2020-11-11 01:31:53 +00:00
Grahame Grieve f23114f901 * fix for NPE in version string comparison 2020-11-11 10:11:40 +11:00
Grahame Grieve 4e602b07e9 fix problem rendering multiple manifestations for an allergy reaction 2020-11-11 10:04:47 +11:00
Grahame Grieve 3b74c39de4 fix problem rendering canonical URLs with | in them 2020-11-11 10:04:02 +11:00
Grahame Grieve 476924e1cb * fix problem with min = 1 on slices.
* fix problem with element definition resolution in profiles for contentReference
* fix problem with rendering unchanged terminology bindings in profiles
2020-11-11 10:02:01 +11:00
Lloyd McKenzie 409bcfbecf Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2020-11-09 23:34:13 -07:00
markiantorno 1db9a028bf Updating version to: 5.1.21-SNAPSHOT and incrementing test cases dependency. 2020-11-05 05:40:28 +00:00
markiantorno 05056e643e Release: v5.1.20
Validator changes:
* (none)

other code changes:
* fix bug when converting positiveInt between versions
* fix bug raising error when processing bundles
* don't use prism for big binaries when rendering library
* fix parameters renderer to create proper anchors
* Don't render id/base/other properties of Resource itself in auto-narrative generator
* fix bug where extension values not generated for simple extensions
* fix bug rendering content references in profiles
***NO_CI***
2020-11-05 05:11:22 +00:00
Grahame Grieve 6626b72b4f * fix bug rendering content references in profiles 2020-11-05 14:13:50 +11:00
Grahame Grieve e6cda40274 * Don't render id/base/other properties of Resource itself in auto-narrative generator
* fix bug where extension values not generated for simple extensions
2020-11-05 14:13:17 +11:00
Grahame Grieve 01430d8d98 fix parameters renderer to create proper anchors 2020-11-05 14:11:54 +11:00
Grahame Grieve 49cf605b06 don't use prism for big binaries when rendering library 2020-11-05 14:11:18 +11:00
Grahame Grieve 2c22d8fa23 fix bug raising error when processing bundles 2020-11-05 14:10:23 +11:00
markiantorno 7a3da4239e Updating version to: 5.1.20-SNAPSHOT and incrementing test cases dependency. 2020-11-03 18:45:02 +00:00
markiantorno a765efa343 Release: v5.1.19
* Release changes
***NO_CI***
2020-11-03 16:45:59 +00:00
jamesagnew 6cd0af3b8c Clean up integer64 type 2020-11-01 14:00:12 -05:00
markiantorno b7661db83e Updating version to: 5.1.19-SNAPSHOT and incrementing test cases dependency. 2020-10-30 00:08:34 +00:00
markiantorno dcaa67ef1c Release: v5.1.18
Validator Changes:
* Mark it has an error if a JSON Array is empty
* Don't make wrong error reports for profiling resources in bundles
* fix bug checking unfixed values for HumanName patterns
* fix bug checking patterns (missed in some circumstances)
* fix bug checking type of resources in bundles
* improve messages around cardinality errors in profiles
* add parameter -html-output for enhanced presentation of slicing information

Other code changes:
* Render binding description in profile tables if it doesn't contain paragraphs
* fix bug with wrong value for contentReference in derived profiles (profiles do not and cannot change the value)
***NO_CI***
2020-10-29 23:41:20 +00:00
Grahame Grieve 82afa47590 add parameter -html-output for enhanced presentation of slicing information (issue #283) 2020-10-29 17:51:34 +11:00
Grahame Grieve 944be1cfba fix bug with wrong value for contentReference in derived profiles (profiles do not and cannot change the value) (missed testing change) 2020-10-29 13:57:25 +11:00
Grahame Grieve 4c421eefd7 * Render binding description in profile tables if it doesn't contain paragraphs
* fix bug with wrong value for contentReference in derived profiles (profiles do not and cannot change the value)
2020-10-29 13:56:56 +11:00
Grahame Grieve a658fc982b Mark it has an error if a JSON Array is empty 2020-10-29 13:53:14 +11:00
Lloyd McKenzie 9e7dacd815 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2020-10-24 20:34:41 -06:00
jamesagnew eb1c67c1cb Account for review comments 2020-10-19 14:56:54 -04:00
jamesagnew 1922f549bb Improve multithreaded performance of datetime types 2020-10-19 14:56:54 -04:00
Lloyd McKenzie 27295db891 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2020-10-14 21:35:38 -06:00
markiantorno 9bbb78e23d Updating version to: 5.1.18-SNAPSHOT and incrementing test cases dependency. 2020-10-14 20:03:52 +00:00
markiantorno 44f7dca1c7 Release: v5.1.17
Validator:
* revise error message when can't connect to the terminology server
* enforce constraints in root slicing definitions as well as in the slices
* Improve messages when no terminology server (-tx n/a)
* Validate Profile on type in profile - must be for the right type

Other Changes:
* Add Search Parameter renderer
* Add text separator system on XhtmlNode
* check supportsCopyright in a JUnit test
* turn off snapshot consistency checking by default

***NO_CI***
2020-10-14 19:30:23 +00:00
Grahame Grieve 058024f57c
Merge pull request #364 from hapifhir/gg-v5117
release notes
2020-10-14 22:11:24 +11:00
Grahame Grieve 5ce25da10b release notes 2020-10-14 16:49:44 +11:00
Grahame Grieve f5b02ff308
Merge pull request #363 from hapifhir/gg-v5117
more fixes for next release
2020-10-14 14:40:01 +11:00
Grahame Grieve 96e44048ce turn off snapshot consistency checking by default + add ability to provide package in line in tests 2020-10-14 13:18:58 +11:00
Grahame Grieve 5c12048749 check supportsCopyright in a JUnit test 2020-10-14 13:17:45 +11:00
Grahame Grieve 920c3193d0 enforce constraints in slicer as well as in slice + Handle -tx n/a better 2020-10-14 13:16:59 +11:00
Lloyd McKenzie d99592416e Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2020-10-11 10:23:20 -06:00
Grahame Grieve d20582ca9d revise error message when can't connect to the terminology server 2020-10-08 20:59:39 +11:00
Grahame Grieve c19f892687 Add Search Parameter renderer 2020-10-08 20:57:56 +11:00
Gerlach, Winfried 0cb038ed0a performance: improve speed of comparing UriTypes 2020-10-07 19:36:03 +02:00
markiantorno 1f583d6ba7 Updating version to: 5.1.17-SNAPSHOT and incrementing test cases dependency. 2020-10-01 04:37:43 +00:00
markiantorno ea0b4c0c1c Release: v5.1.16
Validator:
* Add date addition/subtraction to FHIRPath + add parsing comments
* Fix questionnaire mode parameter support for validator
* add extra debugging when valdiator can't fetch content to validate
* fix error setting up mapping log

Other code changes:
* rename org.hl7.fhir.utilities.cache to org.hl7.fhir.utilities.npm
* report error locations for run time FHIRPath errors
* add search on IG registry to PackageClient
* add focus to FHIRPath function extensions
* fix rendering of definitions in CodeSystems
* fix error rendering bundles in bundles
***NO_CI***
2020-10-01 04:12:17 +00:00
Grahame Grieve e89da42514 * fix error setting up mapping log
* fix rendering of definitions in CodeSystems
* fix error rendering bundles in bundles
2020-10-01 12:39:10 +10:00
Grahame Grieve 3e6863ef70 Support for additional checking in IG Publisher 2020-10-01 11:05:24 +10:00
Grahame Grieve 77d33e8afa Fix comment parsing and add focus to FHIRPath function extensions 2020-10-01 11:04:34 +10:00
Grahame Grieve 46d1987cd0 refactor FHIRPath to report error locations for run time errors 2020-09-30 12:10:59 +10:00
Grahame Grieve 3f97d628ed release notes 2020-09-30 09:30:20 +10:00
Grahame Grieve 5be73ff9c5 rename org.hl7.fhir.utilities.cache to org.hl7.fhir.utilities.npm 2020-09-30 09:24:26 +10:00
Grahame Grieve 510344aa1b Fix FHIRPath engine for updated tests for date addition/subtraction 2020-09-30 09:22:16 +10:00
markiantorno afa46ebe7c Updating version to: 5.1.16-SNAPSHOT and incrementing test cases dependency. 2020-09-26 00:15:47 +00:00
markiantorno 5bb59c3b82 Release: v5.1.15
CI/CD:

* Restructured pom files
* Added profiles for deploying to both GitHub packages, and SonatypeOSS

***NO_CI***
2020-09-25 23:49:45 +00:00
Grahame Grieve 4979a03140 fix rendering problems with languages in value sets 2020-09-25 14:59:12 +10:00
markiantorno b7183f005c Updating version to: 5.1.15-SNAPSHOT and incrementing test cases dependency. 2020-09-24 20:45:19 +00:00
markiantorno 0d0caf3e84 Release: v5.1.14
Validator:
* Add new validation for must-support on types / profiles / targets + improve Extension validation

Other code changes:
* Ensure "I" flag in profile table representation is not used just for infrastructural constraints
* Render multiple values for properties in CodeSystems if they exist
* Fix for npe rendering resources based on profiles
* fix for use of "current" as version
* hack for past bad package URLs
* Add rendering for must support on types, profiles, targets
* add <code> when rendering turtle to HTML
***NO_CI***
2020-09-24 19:38:03 +00:00
Grahame Grieve b578cfbc0d
Gg v5114 b (#356)
* Ensure "I" flag in profile table representation is not used for underlying infrastructural constraints that exist everywhere

* render multiple values for properties if they exist

* fix for npe

* fix for use of "current" as version

* fix bad package URLs as they are loaded

* RELEASE_NOTES.md

* Add rendering for must support on types, profiles, targets

* Add new validation for must-support on types / profiles / targets + improve extension validation

* add <code> when rendering turtle to HTML

* RELEASE_NOTES.md

* fix notes
2020-09-24 14:06:36 -04:00
Grahame Grieve c2fb9e8fd3 Add rendering for must support on types, profiles, targets 2020-09-25 03:25:09 +10:00
Grahame Grieve b8370f7e61
various minor fixes (#353)
* Ensure "I" flag in profile table representation is not used for underlying infrastructural constraints that exist everywhere

* render multiple values for properties if they exist

* fix for npe

* fix for use of "current" as version

* fix bad package URLs as they are loaded

* RELEASE_NOTES.md
2020-09-22 16:17:45 -04:00
Grahame Grieve 5ada654ca2 fix for npe 2020-09-22 22:01:02 +10:00
Grahame Grieve 278697f72b render multiple values for properties if they exist 2020-09-22 22:00:37 +10:00
Grahame Grieve 58b6969544 Ensure "I" flag in profile table representation is not used for underlying infrastructural constraints that exist everywhere 2020-09-22 22:00:15 +10:00
markiantorno 5e3b51e286 Updating version to: 5.1.14-SNAPSHOT and incrementing test cases dependency. 2020-09-21 19:41:08 +00:00
markiantorno 268bb8cde7 Release: v5.1.13
Validator:
* No Changes

Other Changes:
* Various minor improvements to rendering code

***NO_CI***
2020-09-21 19:24:29 +00:00
Grahame Grieve a15be7d314 allow links when ok 2020-09-22 02:14:55 +10:00
Grahame Grieve d07966e422 remove spaces from generated tel: links 2020-09-22 02:14:23 +10:00
Grahame Grieve 17ed666fef fix bug with nested <a> links 2020-09-21 19:54:45 +10:00
Grahame Grieve 71e4b5d6e5 Fix bug producing nested <a> links and producing invalid langauge rendering 2020-09-21 19:53:55 +10:00
Grahame Grieve 4a4105413f Improve Library rendering 2020-09-21 07:08:05 +10:00
markiantorno 4d2c81ede9 Updating version to: 5.1.13-SNAPSHOT and incrementing test cases dependency. 2020-09-17 15:26:59 +00:00
markiantorno afa239ae8b Release: v5.1.12
Validator:
* Fix handling resources in bundles when type is profiled
* Prevent NPE resolving resource in batch
* fix value set validation for primitive types when an expansion is provided, and the code system is not known

Other Changes:
* Package Subsystem - Support wildcars for patch version
* Renderer: Don't make a column for definitions in a code system if there are none
* Renderer: special case support for fr-CA language
* Renderer: Prevent NPE when auto-generating narrative and an illegal resource type is encountered
* FHIRPath Engine: correction for allowing  boolean conversion of primitive types
***NO_CI***
2020-09-17 15:08:40 +00:00
Grahame Grieve 75921b723b
Various fixes (#348)
* depend on 1.1.42-snapshot

* Don't make a column for definitions in a code system if there are none

* special case support for fr-CA language

* Prevent NPE when auto-generating narrative and an illegal resource type is encountered

* Prevent NPE resolving resource in batch

* fix value set validation for primitive types when an expansion is provided, and the code system is not known

* FHIRPath engine: correction for allowing  boolean conversion of primitive types

* Fix handling resources in bundles when type is profiled

* Add test cases for wildcard versions

* release notes
2020-09-17 09:52:05 -04:00
Grahame Grieve 0dcf64cb70 Add test cases for wildcard versions 2020-09-17 17:04:42 +10:00
Grahame Grieve e33ffca749 FHIRPath engine: correction for allowing boolean conversion of primitive types 2020-09-17 15:44:45 +10:00
Grahame Grieve 9d22337929 fix value set validation for primitive types when an expansion is provided, and the code system is not known 2020-09-17 15:42:45 +10:00
Grahame Grieve 2e7e277c97 Prevent NPE resolving resource in batch 2020-09-17 15:42:03 +10:00
Grahame Grieve 3464643921 Prevent NPE when auto-generating narrative and an illegal resource type is encountered 2020-09-17 15:41:32 +10:00
Grahame Grieve 8ce405cc4d special case support for fr-CA language 2020-09-17 15:40:46 +10:00
Grahame Grieve 54d320bb7b Don't make a column for definitions in a code system if there are none 2020-09-17 15:40:06 +10:00
markiantorno a0573907bd Updating version to: 5.1.12-SNAPSHOT and incrementing test cases dependency. 2020-09-16 04:59:05 +00:00
markiantorno 9b07831809 Release: v5.1.11
Validator:
* No changes

Other code changes:
* Support lenient mode on FIHRPath when referring to polymorphics
***NO_CI***
2020-09-16 04:42:16 +00:00
Grahame Grieve 66f0b35a38 FHIRPath - support lenient mode on polymorphics 2020-09-16 13:08:02 +10:00
Lloyd McKenzie 4509be02d7 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2020-09-15 13:40:23 -06:00
markiantorno 8a11bd2e9b Updating version to: 5.1.11-SNAPSHOT and incrementing test cases dependency. 2020-09-15 05:18:08 +00:00
markiantorno efcb237d19 Release: v5.1.10
Validator:
* Fix issue with wrongly finding duplicate ids in bundles (across different resources)
* Start work on validating CDA documents
* Allow discrimination by address and name patterns

Other code Changes:
* Improve language rendering in value sets
* Fix bug generating copyright in IG publishing
* Work on CDA validation infrastructure

***NO_CI***
2020-09-15 05:01:56 +00:00
Grahame Grieve da113e25b6 remove commented out code 2020-09-15 10:57:21 +10:00
Grahame Grieve 48dca881f3 fix bug in path names for CDA 2020-09-15 10:25:23 +10:00
Grahame Grieve db8f28ea51 fix issue rendering translations in value sets 2020-09-14 18:09:40 +10:00
Grahame Grieve 6f149e691c Fix issue with finding duplicate ids in profiled bundles 2020-09-14 18:09:20 +10:00
Grahame Grieve 8855fe1bc6 Fix bug generating copyright 2020-09-14 18:08:44 +10:00
Mark Iantorno 78b61c4555
Tests should all run now (#343) 2020-09-09 12:33:38 -04:00
markiantorno 1d2e9a2be8 Updating version to: 5.1.10-SNAPSHOT and incrementing test cases dependency. 2020-09-09 06:00:52 +00:00
markiantorno 924a01fe7d Release: v5.1.9
Validator:
* fix bug loading implied packages with no version

Other Changes:
* fix bug generating error messages rendering bundles
* fix problems generating snapshots in some profiles
* fix for FHIRPath changes after discussion on Zulip
***NO_CI***
2020-09-09 05:45:19 +00:00
Grahame Grieve 14348bb6f1 Fix bug becuase Operation doesn't have copyright. 2020-09-09 13:33:55 +10:00
Grahame Grieve f696804509 Fix tests 2020-09-09 12:46:04 +10:00
Grahame Grieve a993dcd510 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2020-09-09 11:51:21 +10:00
Grahame Grieve 4616da8a82 fix error generating error message in rendering 2020-09-09 11:48:51 +10:00
Grahame Grieve b9bef4c3c8 fix problems generating snapshots in publisher when some profiles are not valid 2020-09-09 11:48:11 +10:00
Grahame Grieve 295b1659af Fix for FHIR path tests after discussion on Zulip 2020-09-09 11:47:23 +10:00
Lloyd McKenzie f2699a1d50 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2020-09-08 08:00:41 -06:00
markiantorno a92876ab4a Updating version to: 5.1.9-SNAPSHOT and incrementing test cases dependency. 2020-09-08 05:28:46 +00:00
markiantorno a92daa2017 Release: v5.1.8
Validator Fixes:
* Check that there are no nested block HTML elements in an HTML paragraph
* create a warning for UCUM annotations

Other Changes:
* Fix some issues when converting Allergy Intolerance 3 <-> 4
* Fix issues generating invsalid HTML
* Fix up FHIRPath to pass latest test cases
* Bundle rendering improvements
* Give code interface for control over validation rules
* add support for rendering choice groups (CDA)
***NO_CI***
2020-09-08 05:13:12 +00:00
Grahame Grieve 4dd89160dd Add validation for html block elements inside paragraphs 2020-09-08 12:45:13 +10:00
Grahame Grieve 4c245ea3e3 Fix issues with generating invalid html 2020-09-08 12:43:56 +10:00
Grahame Grieve 227bccbb35 fix for empty markdown + rendering improvements for Bundles 2020-09-07 13:08:21 +10:00
Grahame Grieve f2f53c7872 FHIR Path fixes for reconciled tests 2020-09-07 13:07:21 +10:00
Grahame Grieve 2adb9a7b68 Add support for choice groups, and markdownify some elements 2020-09-04 16:23:27 +10:00
Grahame Grieve a964d4fcd5 Fix up rendering of Extensions 2020-09-04 16:22:09 +10:00
Grahame Grieve fc7f71c1f6 rework rendering tests & fix bug in Parameters renderer 2020-09-02 16:34:34 +10:00
Grahame Grieve e1f53eec47 Mark packages as unsuitable for publication 2020-09-02 16:34:06 +10:00
Lloyd McKenzie 0191bfbbfb Fix typo in ParametersRenderer and flag additional issue 2020-09-01 21:52:45 -06:00
markiantorno aae995b72c Updating version to: 5.1.8-SNAPSHOT and incrementing test cases dependency. 2020-09-01 01:33:46 +00:00
markiantorno d3e92cf79a Release: v5.1.7
Validator:
* Better validation of bad references (and fix NPE)
* Rework output to be more informative and cleaner
* Fix bugs in validation of nested bundles
* Fix bug loading package with no specified version
* fix bugs loading discovered packages on the fly
* Validator now supports logical models in XML wkith no namespaces

Other code changes:
* Add version conversion for AllergyIntolerance (1.2 <-> 3.0 & 1.2 <-> 4.0)
* Add version conversion for MedicationRequest
* Fix rendering of documents
* fix for not rendering null values in patterns for must-support view

***NO_CI***
2020-09-01 01:16:21 +00:00
Grahame Grieve 90074b6849
Merge pull request #321 from ahdis/oe_logicalmodel_nonamespace
handling xml without namespace in logical models
2020-09-01 08:11:29 +10:00
Grahame Grieve aa9524ed93
various validation fixes (#327)
* Fix must support rendering of pattern values

* Add time tracking for progress reporting

* Add parent tracking for Validation support of nested bundles

* fix rendering of Documents

* rework validation output + fix up package loading in validator
2020-08-31 14:53:34 -04:00
markiantorno bb953fc7fc Updating version to: 5.1.7-SNAPSHOT and incrementing test cases dependency. 2020-08-27 08:09:56 +00:00
markiantorno 7349ad1f0e Release: v5.1.6
Validator:
* improve error messages for wrong code system URLs

Other code changes:
* fix rendering for must-support to not render empty values in patterns
* control over validation of aggregation modes
* fix NPE in code system comparison
* Fix verious issues
* Upgrade UCUM dependency
* fix support for multi-line comments in structure maps
* add conversion for R2 MedicationOrder -> R3 MedicationRequest
* Upgrade dependency on CQFramework
* improvements to OID to URL conversion
* Fix issue with round-tripping resources with primitives with no value
***NO_CI***
2020-08-27 07:53:37 +00:00
Grahame Grieve 2e5dd95ede fix rendering for must-support to not render empty values in patterns 2020-08-27 16:22:51 +10:00
Grahame Grieve 9578933704 control over aggregation validation 2020-08-27 16:22:21 +10:00
Grahame Grieve de5310c13a remove spurious log outputs 2020-08-27 12:36:50 +10:00
Grahame Grieve e669103aa7 upgrade to pass new reconciled tests 2020-08-27 12:36:10 +10:00
Grahame Grieve 765f24a233 fix bug in code system comparison 2020-08-27 12:33:13 +10:00
markiantorno dcf3f5f218 Upping UCUM dependency, fixing old junit dependencies 2020-08-26 17:26:39 -04:00
Oliver Egger 23cce5b0a7 handle xml default namespace for logical model 2020-08-26 16:53:50 +02:00
Grahame Grieve f52297ae26
Merge pull request #318 from ahdis/oe_structuremaps
structure maps: line comments and fhir path expression
2020-08-26 12:51:10 +10:00
Grahame Grieve 1625c171ae Fix bug where discriminating on erroneous URL 2020-08-26 10:35:04 +10:00
Oliver Egger 8f302e0063 mend 2020-08-25 23:34:33 +02:00
Oliver Egger f0667ed3e2 extended line comment support and not quoting fhirpath expressions 2020-08-25 22:02:01 +02:00
Oliver Egger 381525fc17 extend tests for structuremaps text serializing 2020-08-25 22:00:00 +02:00
Grahame Grieve 0287248a48 work on oid to URI conversion - scope and efficiency 2020-08-24 17:14:49 +10:00
Grahame Grieve 904e600016 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2020-08-21 15:29:20 +10:00
Grahame Grieve eb228bd1e3 Add round trip tests and add fix for round-tripping issue 2020-08-21 15:27:38 +10:00
markiantorno 9f23ff6ea9 Updating version to: 5.1.6-SNAPSHOT and incrementing test cases dependency. 2020-08-20 12:41:28 +00:00
markiantorno 6c156f7001 Release: v5.1.5
Validator:
* No changes

Other code changes:
* Update R5 code to new release R4.5.0
***NO_CI***
2020-08-20 12:22:59 +00:00
Grahame Grieve 8ee4eff74c fix default value for validator setting + hack work around for R5 broken process 2020-08-20 21:00:11 +10:00
Grahame Grieve 5fc297b3b5 Upgrade R5 to latest version 2020-08-20 20:37:10 +10:00
markiantorno be5ba84652 Updating version to: 5.1.5-SNAPSHOT and incrementing test cases dependency. 2020-08-18 22:50:45 +00:00
markiantorno 8ce263a127 Release: v5.1.4
Validator:
* No changes

Other code changes:
* Remove old comparison code
* Don't lazy load simplifier packages
* Add links in version comparisons
* fix NPE in SimpleWorkerContext

***NO_CI***
2020-08-18 22:35:42 +00:00
Grahame Grieve ced57a5dfe
minor fixes to support main build (#311)
* fix up POMs

* fixes for main build to use packages

* more config for validator

* more options for validation version comparison

* clear notes

* more work on better presentation for comparison

* Remove old comparison code

* remove old comparison code

* fix loading bug

* fix to not load Simplifier packages via lazy loading
2020-08-18 09:27:02 -04:00
markiantorno 57e3ae0f15 Updating version to: 5.1.4-SNAPSHOT and incrementing test cases dependency. 2020-08-17 14:28:29 +00:00
markiantorno a27fa4ce18 Release: v5.1.3
Validator:
* add support for -bundle parameter to allow validating just one resource (/type) in a bundle
* improved reporting of errors and warnings for unknown code systems on required bindings
* pass dependencies to the server for imported value sets etc
* use server side caching for more efficient use of bandwidth
* Fix NPE loading packages from simplifier or old packages (and don't lazy load packages passed to command line)

Other code changes:
* further work on comparing CapabilityStatements (nearly, but not quite, finished)
* More work on timeouts in terminology client
* Fix for parsing error in R3/R4 sparse arrays for primitives types
* Improve terminology client logging
* don't reload a package if already loaded
* rendering: fix NPEs rendering patient summary, and render expressions for quantities
***NO_CI***
2020-08-17 14:07:49 +00:00
Grahame Grieve eb23fcc5e4
more config for validator (#309)
* fix up POMs

* fixes for main build to use packages

* more config for validator

* more options for validation version comparison
2020-08-17 09:53:54 -04:00
markiantorno f6b4df237f fixing versioning 2020-08-17 09:04:08 -04:00
markiantorno 127bbc9e38 Release: v5.1.2
***NO_CI***
2020-08-16 02:26:50 +00:00
markiantorno c09becfba2 Updating version to: 5.1.3-SNAPSHOT and incrementing test cases dependency. 2020-08-15 23:06:25 +00:00
markiantorno cb1abcad25 Release: v5.1.2
Validator:
* add support for -bundle parameter to allow validating just one resource (/type) in a bundle
* improved reporting of errors and warnings for unknown code systems on required bindings
* pass dependencies to the server for imported value sets etc
* use server side caching for more efficient use of bandwidth
* Fix NPE loading packages from simplifier or old packages (and don't lazy load packages passed to command line)

Other code changes:
* further work on comparing CapabilityStatements (nearly, but not quite, finished)
* More work on timeouts in terminology client
* Fix for parsing error in R3/R4 sparse arrays for primitives types
* Improve terminology client logging
* don't reload a package if already loaded
* rendering: fix NPEs rendering patient summary, and render expressions for quantities
***NO_CI***
2020-08-15 22:49:38 +00:00
markiantorno be26988adf fixing versions and test dependencies 2020-08-15 18:37:03 -04:00
markiantorno 7f5c5e36dd Release: v5.1.1
Validator:
* add support for -bundle parameter to allow validating just one resource (/type) in a bundle
* improved reporting of errors and warnings for unknown code systems on required bindings
* pass dependencies to the server for imported value sets etc
* use server side caching for more efficient use of bandwidth
* Fix NPE loading packages from simplifier or old packages (and don't lazy load packages passed to command line)

Other code changes:
* further work on comparing CapabilityStatements (nearly, but not quite, finished)
* More work on timeouts in terminology client
* Fix for parsing error in R3/R4 sparse arrays for primitives types
* Improve terminology client logging
* don't reload a package if already loaded
* rendering: fix NPEs rendering patient summary, and render expressions for quantities
***NO_CI***
2020-08-15 21:41:16 +00:00
Grahame Grieve cbf70365f1 fix value set validation to deal with multi-heirarchy 2020-08-16 06:48:06 +10:00
Grahame Grieve 7771c7f231 Significant improvement to performance rendering value sets, and only use server side caching if the server declares it supports it 2020-08-14 08:09:02 +10:00
markiantorno eed1d730c4 Updating version to: 5.1.2-SNAPSHOT and incrementing test cases dependency. 2020-08-13 15:23:03 +00:00
markiantorno beeaf26b6d Release: v5.1.1
Validator:
* add support for -bundle parameter to allow validating just one resource (/type) in a bundle
* improved reporting of errors and warnings for unknown code systems on required bindings
* pass dependencies to the server for imported value sets etc
* use server side caching for more efficient use of bandwidth
* Fix NPE loading packages from simplifier or old packages (and don't lazy load packages passed to command line)

Other code changes:
* further work on comparing CapabilityStatements (nearly, but not quite, finished)
* More work on timeouts in terminology client
* Fix for parsing error in R3/R4 sparse arrays for primitives types
* Improve terminology client logging
* don't reload a package if already loaded
* rendering: fix NPEs rendering patient summary, and render expressions for quantities
***NO_CI***
2020-08-13 15:03:45 +00:00
Grahame Grieve 2c0fe519cb
more work on code validation (#306)
* Handle unknown code systems better when checking codes from unknown systems

* more work on code validation

* more work on comparison

* hack workaround for UTG NUCC problem.

* adjust exception type

* more work on timeouts

* improve error message

* fix NPE?

* release notes

* Improve error message
2020-08-13 09:47:05 -04:00
Grahame Grieve 008dc84546 Use server side caching to reduce the bandwidth utilitization 2020-08-13 08:14:54 +10:00
Grahame Grieve bb320892e6 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2020-08-13 06:52:18 +10:00
jamesagnew 09d0ae4caa Bump version to 5.1.1-SNAPSHOT for next development cycle 2020-08-12 05:33:18 -04:00
Grahame Grieve 92d031b968 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2020-08-12 14:52:31 +10:00
Grahame Grieve 10927445e2 Pass dependencies when evaluating a value set ($validate-code or $expand) 2020-08-12 14:49:51 +10:00
Grahame Grieve cef25b4bf0 don't reload an already loaded package 2020-08-12 14:45:49 +10:00
Grahame Grieve 9e422a1a2e improve terminology logging 2020-08-12 14:44:41 +10:00
jamesagnew 98ba0506c2 Version bump to 5.1.0 2020-08-11 17:41:20 -04:00
Grahame Grieve 6ecf1c8f99 Fix issues with reloading package once already loaded in validator + add test case 2020-08-12 05:11:35 +10:00
Grahame Grieve 20a7682c96 Add support for bundle profile parameter 2020-08-11 06:40:11 +10:00
Grahame Grieve 1555849e9a updates to PR 2020-08-11 05:44:13 +10:00
Grahame Grieve 039027c588 Comparison for CapabilityStatements 2020-08-10 15:57:14 +10:00
Grahame Grieve 96d769a6e2 prevent NPEs generating patient summary 2020-08-10 15:53:48 +10:00
Grahame Grieve bc11ac5c5b Start working on rendering expressions 2020-08-10 15:53:08 +10:00
Grahame Grieve 74c11cfec1 Fix problem loading old style packages not suitable for lazy loading. 2020-08-10 15:51:59 +10:00
markiantorno 1af6268fa8 Updating version to: 5.0.23-SNAPSHOT and incrementing test cases dependency. 2020-08-07 03:51:36 +00:00
markiantorno 5c4c5ce1c8 Release: v5.0.22
Validator:
* no changes

Other code:
* Continue to work on connection timeout issues
* Fix bug in DiagnosticReportRenderer (wrong element accessed)
* change type of resource parameter to ResourceRender.build
***NO_CI***
2020-08-07 03:33:21 +00:00
Grahame Grieve ad07997c5d fix bug handling fragment code systems with value sets with pre-build expansions 2020-08-07 11:30:31 +10:00
Grahame Grieve a12b1bdc93 change type of resource parameter to ResourceRender.build 2020-08-07 11:28:18 +10:00
Grahame Grieve 800e381629 Fix bug in DiagnosticReportRenderer (wrong element accessed) 2020-08-07 11:27:57 +10:00
Grahame Grieve 4add0f3ac8 Continue to work on connection timeout issues 2020-08-07 11:26:44 +10:00
markiantorno ac2ae655d5 Final pipeline versioning fix 2020-08-06 15:12:20 -04:00
markiantorno 37134e5252 Updating version to: 1.1.30-SNAPSHOT and incrementing test cases dependency. 2020-08-06 19:06:12 +00:00
markiantorno 340250cf74 Release: v5.0.21
* Release pipelines fix for incrementing external dependencies
***NO_CI***
2020-08-06 18:49:05 +00:00
markiantorno 91c1ed7e31 Fixing build pipelines issue 2020-08-06 13:56:27 -04:00
markiantorno 49695b2801 Updating version to: null.object.1-SNAPSHOT and incrementing test cases dependency. 2020-08-06 16:23:24 +00:00
markiantorno 97c974ca38 Release: v5.0.20
Validator:
* Fix for problem with expansion code checking and incomplete value sets

General Code changes:
* Work on connection problems to terminology server
* Fix for problem loading Measures from packages
* Work on i18n for Rendering
* fix case bug renderung bundles and parameters
* start working on i18n for Rendering
***NO_CI***
2020-08-06 15:40:30 +00:00
Grahame Grieve f73147523a
Gg v5.0.20 work (#294)
* ongoing work around connection problems with tx.fhir.org

* fix for bug processing CCDA constraints (logical model constraints)

* fix for bug loading Measures from packages

* fix NPEs loading invalid packages

* Start Working on i18n for Rendering + Fix case bug rendering bundles and parameters

* Fix for problem with expansion code checking and incomplete value sets

* release notes
2020-08-06 10:51:05 -04:00
markiantorno f54e56e74c Updating version to: 5.0.20-SNAPSHOT 2020-08-05 23:31:54 +00:00
markiantorno f6071cb0df Release: v5.0.19
Validator:
* Improved handling of terminology timeout issues

Other code changes:
* fix questionnaire rendering to create valid resources
***NO_CI***
2020-08-05 22:50:40 +00:00
Grahame Grieve c70c43271a fix questionnaire rendering to create valid resources 2020-08-06 07:38:20 +10:00
Grahame Grieve b4a65d1825 fix heirarchy for XhtmlType 2020-08-06 07:37:20 +10:00
Grahame Grieve dd48811c86 debugging improvements 2020-08-06 07:36:38 +10:00
Grahame Grieve 3f6207bf4f improve handling of timeout issues in client 2020-08-06 07:35:49 +10:00
markiantorno ea322996f3 Updating version to: 5.0.19-SNAPSHOT 2020-08-03 21:14:01 +00:00
markiantorno 18cf563e78 Release: v5.0.18
Validator Fixes:
* better validation of external references. Note: this is a potentially significant change: things that were called ok before may not be now, and things that were not ok before may become so, depending on the interplay between this and auto-load, further work may be needed here
* Support better validation of version specific profiles in meta.profile. This may also find new errors that were not previously being found
* Support auto-determination of the version of FHIR to use when using the java validator
* auto-load packages from the package server when references to profiles etc are encountered
* look for references inside other parameters in Parameters resource
* no validation for CanonicalResource.url (further work needed)

Other Code changes:
* Rendering: add rendering for Parameters resources
* Rendering: refactor of resource resolution code to support Parameters
* General clean up of rendering consistency & implement additional details when rendering (including patient summary)
* Rendering: major overhaul of DiagnosticReport rendering
* Fix NPE bug in value set comparison

***NO_CI***
2020-08-03 20:51:09 +00:00
Grahame Grieve 5299bbe16b * better validation of external references. Note: this is a potentially significant change: things that were called ok before may not be now, and things that were not ok before may become so, depending on the interplay between this and auto-load, further work may be needed here
* Support better validation of version specific profiles in meta.profile. This may also find new errors that were not previously being found
* Support auto-determination of the version of FHIR to use when using the java validator
* auto-load packages from the package server when references to profiles etc are encountered
* look for references inside other parameters in Parameters resource
2020-08-03 17:40:21 +10:00
Grahame Grieve 7616b55213 * Rendering: add rendering for Parameters resources
* Rendering: refactor of resource resolution code to support Parameters
* General clean up of rendering consistency & implement additional details when rendering (including patient summary)
* Rendering: major overhaul of DiagnosticReport rendering
2020-08-03 17:36:32 +10:00
Grahame Grieve 137d04f68d fix NPE error comparing value sets 2020-08-03 17:30:37 +10:00
Grahame Grieve 477bf66108 Fix broken links in Bundle rendering 2020-08-01 08:55:46 +10:00
Grahame Grieve ebead8fd7c fix bugs in comparisons 2020-07-31 12:51:43 +10:00
Grahame Grieve 59b0f032cb fix for NPE in FHIRPath parser 2020-07-31 12:48:54 +10:00
markiantorno 82125235a0 Updating version to: 5.0.18-SNAPSHOT 2020-07-30 04:47:14 +00:00
markiantorno a375f58c82 Release: v5.0.17
* Batch validation of codes in value sets
* Fix path problem doing comparisons
* Don't produce 2 columns for status for deprecated codes
* Fix errors in StructureDefinition validation
***NO_CI***
2020-07-30 04:18:42 +00:00
Grahame Grieve 5aec9978bd fix up tests to pass 2020-07-30 12:35:16 +10:00
Grahame Grieve 569718d829 Code formatting + fix code system rendering 2020-07-30 12:03:03 +10:00
Grahame Grieve 883f4ee4cb batch value set validation 2020-07-30 12:02:04 +10:00
Grahame Grieve 2c1460a663 ditto 2020-07-30 12:01:35 +10:00
Grahame Grieve a80d11334a Fix bug producing invalid xhtml 2020-07-30 12:01:09 +10:00
Grahame Grieve 4b5470f825 Don't produce 2 columns for status for deprecated codes 2020-07-30 12:00:30 +10:00
Grahame Grieve bde55f1872 Improve error message 2020-07-30 11:59:37 +10:00
Grahame Grieve 1ef4e59113 fix path problem in comparison 2020-07-30 11:58:55 +10:00
Grahame Grieve ea52c4206f Batch validation of codes in value sets 2020-07-30 11:57:11 +10:00
markiantorno a154f454b4 Updating version to: 5.0.17-SNAPSHOT 2020-07-28 05:15:29 +00:00
markiantorno 5dcef3e530 Release: v5.0.16
* fix evaluation of codes in code systems that are labelled content = fragment
* fix url for cqfmeasures project
* change from error to warning for code system fragments

***NO_CI***
2020-07-28 04:51:08 +00:00
Grahame Grieve 62b70947b8 warning not error on code system fragment 2020-07-28 12:43:55 +10:00
Grahame Grieve b256965738 * fix evaluation of codes in code systems that are labelled content = fragment 2020-07-28 06:06:01 +10:00
markiantorno 2fc1d481e4 Updating version to: 5.0.16-SNAPSHOT 2020-07-27 15:40:41 +00:00
markiantorno c55982c47b Release: v5.0.15
* Version comparison support
* Fix for problem validating search parameter derivation
* Added lazy resource loading - improve loading times and memory requirements in advance of the challenge of loading UTG for most use cases
* Fixed bug where canonical resource has no URL
***NO_CI***
2020-07-27 15:14:44 +00:00
Grahame Grieve bf0f81f51b
version comparison support (#284)
* add package url fixer

* fix problems doing CCDA snapshots

* Fix for http://hl7.org/fhir/StructureDefinition/capabilitystatement-expectation

* improve error message

* fix package id in generated version specific tests

* remove spurious debug statement

* rework package loaders for automatic loading of package dependencies

* fix spelling mistake

* add automatic loading of package dependencies by the context

* significant work on tests to support version comparison

* fix minor loading issue

* compile fix

* utils support

* fixes for version comparison

* rework error handling when expanding valuesets + add error check on value set imports

* fix loading bug

* improve error message
2020-07-27 09:04:31 -04:00
Grahame Grieve b9755c8f1f fix tests 2020-07-22 10:19:32 +10:00
Grahame Grieve f6c7d294c4 fix problem validating search parameter derivation 2020-07-22 08:10:12 +10:00
Grahame Grieve a985831d76 efficiency cleanup 2020-07-22 07:02:15 +10:00
Grahame Grieve 701ac1b560 fix bug when canonical resource has no URL 2020-07-22 06:59:53 +10:00
Grahame Grieve 6421226011 more improvements around lazy loading 2020-07-21 17:14:08 +10:00
Grahame Grieve acbba54d25 fix issues in testing 2020-07-21 06:16:45 +10:00
markiantorno 27e8aa0bec wip 2020-07-20 13:30:21 -04:00
Grahame Grieve c53db20879 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2020-07-20 22:58:16 +10:00
Grahame Grieve 52267118c6 implement lazy loading - improve loading times and memory requirements in advance of the challenge of loading UTG for most use cases 2020-07-20 22:57:15 +10:00
markiantorno b877474fc8 Updating version to: 5.0.15-SNAPSHOT 2020-07-17 22:21:01 +00:00
markiantorno 675c2751aa Release: v5.0.14
* Fix for temp directory creation test on Windows machines
* Deployment fix
***NO_CI***
2020-07-17 21:55:26 +00:00
markiantorno e14de3b339 Updating version to: 5.0.14-SNAPSHOT 2020-07-17 05:55:20 +00:00
markiantorno fb886a7217 Release: v5.0.13
Validator:
* Add support for conformsTo in invariants on elements
* Fix bug in assumeValidRestReferences doing bundle validation
* Add -show-times parameter
* Handle weird ege case for fixedReference

Code:
* add support for row opacity in rendered tables
* fix cross version convertor for DataRequirements
* fix rendering of multiple type profiles
* add code for converting resource names between versions
* add FHIRPath engine to i18n framework
* fix bundle rendering
* change HTML parser to parse doctype declaration, and move html validation to the validator
* snapshot generator - fix bug where slices get cardinaliyt min=1 by default
***NO_CI***
2020-07-17 05:45:51 +00:00
Grahame Grieve 9bbe5ab5c8 improve rendering of contained resources 2020-07-17 13:42:44 +10:00
Grahame Grieve ad46dfd611 Add more debugging to shapshot tests 2020-07-17 09:29:08 +10:00
Grahame Grieve 72b0aa6442 fix up implementation of htmlChecks/htmlChecks2 2020-07-17 09:28:20 +10:00
Grahame Grieve bb8fde3682 fix bug assigning min=0 to slices by default 2020-07-17 09:27:51 +10:00
Grahame Grieve 4dc78b5b3c add support for table row opacity 2020-07-16 09:19:40 +10:00
Grahame Grieve fe29c3022f implement HTMLChecks in FHIRPath 2020-07-15 16:44:44 +10:00
Grahame Grieve 1736784bae Add check for constraining must=support wrongly 2020-07-15 16:43:57 +10:00
Grahame Grieve 5ae6aa23fd fix problem with snapshot test infrastructure 2020-07-15 16:43:16 +10:00
Grahame Grieve fa7de3a308 more FHIRPath engine into i18n framework 2020-07-14 08:16:56 +10:00
Grahame Grieve b65567010c fix rendering of target types in profiles 2020-07-14 07:47:15 +10:00
Grahame Grieve 7d7c1315d4 fix bundle labels when rendering 2020-07-10 06:50:55 +10:00
markiantorno facb2ca0a8 Updating version to: 5.0.13-SNAPSHOT 2020-07-07 02:37:39 +00:00
markiantorno b770fb8a2c Release: v5.0.12
* Fix bug in snapshot generation - not handling case where content is sliced, base slicing detail is provided, and max slices = 1
* More work on validating existing snapshots

***NO_CI***
2020-07-07 02:27:57 +00:00
Grahame Grieve ce47093c12
Gg work (#267)
* fix for new test case about profiles restricting types

* update release notes

* fix NPEs doing ProfileComparison

* fix non-translated messages in InstanceValidator

* Fix validation issues

* update to 1.1.22 tests

* fix bug finding children in getChildList when element is a reference to another element

* fixes to QuestionnaireRenderer + add QuestionnaireResponseRenderer

* Add more informative error when no type parser provided

* fix bug where current/dev builds do not properly update the cache

* improve test error message

* set up release notes

* fix bug with CDA snapshot generation

* fix bug in type checking code

* Add support for validating against ImplementationGuide.global

* Fix bug in QuestionnaireResponse rendering

* update tests dependency

* ping build

* Add additional StructureDefinition validation

* update release notes

* fix npe rendering diagnostic reports without subjects

* don't add note on untranslatable messages

* check existing snapshots (preliminary)

* add signpost message tracking

* start working on profile generating bug

* Fix bug in snapshot - not handling case where content is sliced, base slicing detail is provided, and max slices = 1

* fix release notes
2020-07-06 20:21:40 -04:00
markiantorno ab8bbb5491 Updating version to: 5.0.12-SNAPSHOT 2020-07-04 00:25:03 +00:00
markiantorno 9d5cb114a2 Release: v5.0.11
* Added text/cql.identifier media type to Measure validation
* Fix bug in QuestionnaireResponse rendering
* Validate based on ImplementationGuide.global
* add validation parameter -crumb-trails
* improve validation of StructureDefinitions

***NO_CI***
2020-07-04 00:15:32 +00:00
Grahame Grieve 92c02d2294
Add support for validating against ImplementationGuide.global (#266)
* fix for new test case about profiles restricting types

* update release notes

* fix NPEs doing ProfileComparison

* fix non-translated messages in InstanceValidator

* Fix validation issues

* update to 1.1.22 tests

* fix bug finding children in getChildList when element is a reference to another element

* fixes to QuestionnaireRenderer + add QuestionnaireResponseRenderer

* Add more informative error when no type parser provided

* fix bug where current/dev builds do not properly update the cache

* improve test error message

* set up release notes

* fix bug with CDA snapshot generation

* fix bug in type checking code

* Add support for validating against ImplementationGuide.global

* Fix bug in QuestionnaireResponse rendering

* update tests dependency

* ping build

* Add additional StructureDefinition validation

* update release notes
2020-07-03 18:25:15 -04:00
markiantorno 97f6758969 Updating version to: 5.0.11-SNAPSHOT 2020-07-01 00:52:38 +00:00
markiantorno 9602898b73 Release: v5.0.10
* Added text/cql.identifier media type to Measure validation
***NO_CI***
2020-07-01 00:43:41 +00:00
Grahame Grieve 9024a309ac
fix various bugs (#265)
* fix for new test case about profiles restricting types

* update release notes

* fix NPEs doing ProfileComparison

* fix non-translated messages in InstanceValidator

* Fix validation issues

* update to 1.1.22 tests

* fix bug finding children in getChildList when element is a reference to another element

* fixes to QuestionnaireRenderer + add QuestionnaireResponseRenderer

* Add more informative error when no type parser provided

* fix bug where current/dev builds do not properly update the cache

* improve test error message

* set up release notes
2020-06-30 20:25:38 -04:00
markiantorno 7f7e83f6f8 Updating version to: 5.0.10-SNAPSHOT 2020-06-27 00:25:51 +00:00
markiantorno 4ca25bdb52 Release: v5.0.9
* Two significant bug fixes for the validator (thanks Mark Burnett from Babylon Health for finding them):
  * The validator was not enforcing type restrictions when some profiles restricted elements with choices to a single type
  * The validator was only creating warnings not errors for required bindings on some Quantities
  * + Fix handling of infrastructural terminology failings on Codings - treat them as warnings not errors
* Add extra validation for value sets (check concept codes are valid)
* Add extra code to check derivation consisteny for SearchParameter resources
* More Improvements to Questionnaire Rendering

***NO_CI***
2020-06-27 00:17:13 +00:00
Grahame Grieve b08c12f2c4
update test case dependency to 1.1.22 (#263)
* fix for new test case about profiles restricting types

* update release notes

* fix NPEs doing ProfileComparison

* fix non-translated messages in InstanceValidator

* Fix validation issues

* update to 1.1.22 tests
2020-06-26 20:07:30 -04:00
Grahame Grieve 03a4224424
fix for new test case about profiles restricting types (#261)
* fix for new test case about profiles restricting types

* update release notes

* fix NPEs doing ProfileComparison

* fix non-translated messages in InstanceValidator
2020-06-26 14:46:54 -04:00
Grahame Grieve 93f8b1c338
Merge pull request #255 from ahdis/oe_structuremap_np
StructureMap rendering  has np when RelationShip is not set
2020-06-26 10:24:09 +10:00
Grahame Grieve e1e994704d More stability on tests + fix questionnaire renderer problem + add SearchParameter derivation validation 2020-06-25 11:24:03 +10:00
Grahame Grieve a85adcf88d enhancements to questionnaire renderer 2020-06-24 17:27:08 +10:00
Grahame Grieve 37bd445ed4 fix bug in rendering of relative references 2020-06-24 15:07:02 +10:00
Grahame Grieve 7ac714c2b6 Add resource sorters 2020-06-24 13:45:28 +10:00
Oliver Egger 4f21c40f83 set equivalence relationship in parsing 2020-06-22 12:34:00 +02:00
markiantorno 344d778a87 Updating version to: 5.0.9-SNAPSHOT
***NO_CI***
2020-06-19 22:15:34 +00:00
markiantorno 87f1c42b89 Release: v5.0.8
***NO_CI***
2020-06-19 22:06:03 +00:00
Grahame Grieve 0e8b5f6552
various fixes for reported bugs (#252)
* fix bug in Definition mode - support ofType()

* fix bug reading old packages

* fix for invalid OperationOutome if nothing is wrong

* more fix for when no errors found
2020-06-19 16:02:56 -04:00
Grahame Grieve 6a6f6e6167 Add support for removing code systems from the cache 2020-06-18 08:46:01 +10:00
Grahame Grieve 93b0d74eb5 Add GraphDefinition engine 2020-06-17 12:23:00 +10:00
Grahame Grieve faf31afda1 fix rendering issues found in main build 2020-06-17 12:22:40 +10:00
Grahame Grieve 1a4edb33a4 Fix problem with NPE rendering quantity 2020-06-14 07:08:31 +10:00
markiantorno 49c35b1de2 Updating version to: 5.0.8-SNAPSHOT
***NO_CI***
2020-06-13 13:12:37 +00:00
markiantorno b2ecaa2bfa Release: v5.0.7
* Override extension methods in BackboneElement to look in modifierExtensions as well as extensions
* First draft of Profile Comparison tools (org.hl7.fhir.r5.comparison)
* Improved error messages when snapshot generation fails when slicing something that doesn't repeat
* Improvements for CDA round-tripping (XML esacping issues, xsi:type related issues, namespacing issues)
* Fix bug rendering DiagnosticReports with multiple categories
* adjust check on Attachment to only be an warning (when no meaningful content exists)
* add security check mode to Validator
***NO_CI***
2020-06-13 12:51:27 +00:00
Mark Iantorno f5455bb9e9
Merge branch 'release' into merge_branch 2020-06-12 19:34:50 -04:00
Grahame Grieve c1a9d3d1e5 beef up tests for multiple dependencies in snapshot generation 2020-06-12 09:23:12 +10:00
Grahame Grieve c6d667db04 fix for profile comparison issues 2020-06-12 09:22:48 +10:00
Grahame Grieve 3e55b24473
Merge pull request #237 from hapifhir/gg-work
override Element extension methods to also check for modifierExtensions
2020-06-11 21:58:20 +10:00
Grahame Grieve ebbee32827
Merge pull request #238 from hapifhir/gg-work-2
fix bug with category
2020-06-11 21:57:50 +10:00
Grahame Grieve 5f1d6e193c first release of functional Profile comparison on new framework 2020-06-11 16:40:57 +10:00
Grahame Grieve a09c4c3cea fix NPE in IG publisher 2020-06-11 16:40:20 +10:00
Grahame Grieve 3b925f219d Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into gg-work 2020-06-11 06:24:02 +10:00
Oliver Egger ebc2a7a6ba don't escape umlaut in elem utf8 2020-06-10 19:50:52 +02:00
Grahame Grieve 8f838d164f fix bug with category 2020-06-10 22:08:04 +10:00
Grahame Grieve 5efaee2c47 add javadoc around extension mgmt 2020-06-10 12:16:54 +10:00
Grahame Grieve 0c9375aa5b fix whitespace 2020-06-10 09:47:12 +10:00
Grahame Grieve cfe386e141 clarify 2020-06-10 09:45:27 +10:00
Grahame Grieve fb9b123c65 override Element extension methods to also check for modifierExtensions 2020-06-10 09:00:51 +10:00
Grahame Grieve b01c64dc2c
Merge pull request #197 from ahdis/oliveregger_cdatitle
Deserializing CDA ST and ED elements from JSON fix
2020-06-10 08:47:13 +10:00
Grahame Grieve 4d9ace1619
Merge pull request #228 from ahdis/oliveregger_fml_xsitype
CDA xsi:type serialization when using fhir mapping language
2020-06-10 08:45:12 +10:00
Grahame Grieve 9e7ef8ab38
Merge pull request #230 from ahdis/oe_cdanarrative_npfix
CDA Narrative conversion from FHIR, Nullpointer exception fix
2020-06-10 08:43:17 +10:00
Grahame Grieve c26b331850 more work on profile comparison 2020-06-09 17:22:37 +10:00
Grahame Grieve 81ebd97599 fix bug in validator XML parser 2020-06-09 17:22:03 +10:00
Oliver Egger 31a4d31755 CDA Narrative conversion from FHIR NP fix 2020-06-08 21:51:05 +02:00
Oliver Egger 473a9aab0a roundtrip for sdtc, add ns, xml name to serialize 2020-06-08 15:48:13 +02:00
Oliver Egger d0ee44dfa8 json roundtrip cda title 2020-06-08 10:47:54 +02:00
Oliver Egger 5576a02378 add ed/st type definition and roundrip 2020-06-08 10:32:47 +02:00
Oliver Egger 22ec0924da logical model not as resource (create xsi:type) 2020-06-08 10:01:09 +02:00
Grahame Grieve 94467b270a standardise terminology client across versions 2020-06-07 08:42:14 +10:00
Mark Iantorno 0fb57007c4
Release v5.0.6 (#226)
* reenable test and fix recursion

* remove disabled r4 fml tests

* add conformsTo test and support for FML

* Snapshot builder fix (#223)

* Update module-snapshot-publishing.yml for Azure Pipelines

* Changing pipeline, because intermodule depenedecies are not being read in correctly.

* Update README.md

* Fixed bad link

* Release: v5.0.6

***NO_CI***

* Updating version to: 5.0.7-SNAPSHOT
***NO_CI***

* Fixing issues and preparing for release (#225)

* Issue #189 - improve Questionnaire error message

* fix for issue #187

* more work on comparison

* Fix for NamingSystem display

Co-authored-by: Oliver Egger <oliver.egger@ahdis.ch>
Co-authored-by: Grahame Grieve <grahameg@gmail.com>
2020-06-05 18:47:17 -04:00
Grahame Grieve 0c718c7a9b Fix for NamingSystem display 2020-06-06 07:28:58 +10:00
Grahame Grieve b2367e94b6 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into gg-work 2020-06-06 07:24:00 +10:00
Grahame Grieve 60119b5f64 more work on comparison 2020-06-06 07:23:43 +10:00
Grahame Grieve eaab390aa4
Merge pull request #218 from ahdis/oliveregger_fml_conformsto
FHIR Mapping Language support for conformsTo function
2020-06-06 07:00:23 +10:00
Mark Iantorno 97b6a9fbdb
Snapshot builder fix (#223)
* Update module-snapshot-publishing.yml for Azure Pipelines

* Changing pipeline, because intermodule depenedecies are not being read in correctly.
2020-06-05 13:23:52 -04:00
Oliver Egger e6e4515777 add conformsTo test and support for FML 2020-06-05 17:56:14 +02:00
Oliver Egger 72d250a40a Merge remote-tracking branch 'upstream/master' 2020-06-05 17:55:01 +02:00
markiantorno 7975a65474 wip 2020-06-05 11:05:52 -04:00
Grahame Grieve 3c296b3ff7 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into gg-work 2020-06-05 05:36:14 +10:00
markiantorno 9c3d678f6e changing package cache manager to the new version used in r4 so builds pass. reverting changes to fork number in maven 2020-06-04 09:57:34 -04:00
Oliver Egger bc4f99bed8 Merge remote-tracking branch 'upstream/master' 2020-06-04 10:29:48 +02:00
Grahame Grieve fcc18a0e39
Merge pull request #214 from hapifhir/ja_20200524_npm_rework
Refactor package support to remove filesystem dependency
2020-06-04 16:04:02 +10:00
Grahame Grieve f90d456ddc Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into gg-work 2020-06-04 10:37:37 +10:00
Grahame Grieve 83157e689f Improve rendering of content reference in profiles 2020-06-04 10:37:18 +10:00
markiantorno 7a63c0b353 wip 2020-06-03 13:33:12 -04:00
markiantorno 38e2afbf25 Packaging all SNAPSHOTS at once, instead of iterating through individual pom files 2020-06-03 11:19:57 -04:00
markiantorno a74b604ca3 wip 2020-06-03 10:21:06 -04:00
Oliver Egger 429774afb9 Merge remote-tracking branch 'upstream/master' 2020-06-03 14:48:53 +02:00
Grahame Grieve 861a0ee706 change error to warning for extension frrom different version because context might change between versions 2020-06-03 16:03:14 +10:00
Grahame Grieve 14505af3b5 Fix NPE validating from unknown code system when the code is in extension 2020-06-03 09:32:52 +10:00
jamesagnew 6534a5358b Merge branch 'master' into ja_20200524_npm_rework 2020-06-02 18:02:51 -04:00
Grahame Grieve 7ac1b1f0e0 implement new FHIRPath functions 2020-06-03 06:52:47 +10:00
Grahame Grieve 08b59b89e2 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2020-06-03 05:06:45 +10:00
Grahame Grieve 8658047c16 FHIRPath functions 2020-06-03 05:06:25 +10:00
markiantorno b8a4f6ae4f putting back in check for WINDOWS os for sdc test case. I know this isn't ideal, but this will get the tests back to a passing state, and we canmake changes with the CI running 2020-06-02 11:25:59 -04:00
Grahame Grieve f169a4315f start working on R3 string functions 2020-06-02 18:21:27 +10:00
Grahame Grieve 211ac8fc12 fix bug processing profiles for v1.4.0 2020-06-02 18:21:09 +10:00
Grahame Grieve f1d901a842 Support for rendering contained resources in IG Publisher 2020-06-02 13:52:28 +10:00
Grahame Grieve c5634c012e Questionnaire Rendering improvements 2020-06-02 13:51:41 +10:00
Grahame Grieve a0245ca926 Release new version 5.0.6 2020-06-01 17:40:06 +10:00
Grahame Grieve a99c2cee96 Fix bad path in QuestionnaireRenderer 2020-06-01 16:53:02 +10:00
Grahame Grieve adf7daff51 fix bad path in snapshot generation tests 2020-06-01 16:52:47 +10:00
Grahame Grieve ba505a800e Add toBase64 & fromBase64 to FHIRPath 2020-06-01 16:51:49 +10:00
jamesagnew 17411a3659 Merge branch 'master' into ja_20200524_npm_rework 2020-05-30 12:07:17 -04:00
Grahame Grieve 05ac3ebc98 Release new version 5.0.5 2020-05-30 09:55:30 +10:00
Grahame Grieve b4fc944afc fix up CDA tests, and add support for http://hl7.org/fhir/StructureDefinition/elementdefinition-xml-name for CDA 2020-05-30 09:39:53 +10:00
Grahame Grieve 4af4925657 move turtle parser + tests to Utilities 2020-05-30 09:38:48 +10:00
Grahame Grieve 112b09d00d fix bug rendering by profile 2020-05-29 17:44:36 +10:00
Grahame Grieve c4185492a5 fix bug rendering content references in profiles 2020-05-29 15:06:45 +10:00
Grahame Grieve dab9a7d4cd fix up sdc test 2020-05-29 12:47:30 +10:00
markiantorno a8176a841d Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into junit_test_issues 2020-05-28 14:16:19 -04:00
markiantorno 5c7e713997 Adding conditional execution for new Narrative test, removing test suite, as we don't use those anymore, they are from JUnit 4 and cause the vintage engine to kick in, which double runs some tests. 2020-05-28 13:47:10 -04:00
Grahame Grieve 0f0d19cd94 Add checks for illegal constratins on elements 2020-05-28 22:55:35 +10:00
Grahame Grieve f64d5c7fd5 fix problem with rendering confusion between paths around local and base specifications 2020-05-28 14:08:30 +10:00
Grahame Grieve c7258dc7eb fix bug constraining elements once they are sliced 2020-05-28 14:07:26 +10:00
Grahame Grieve 998d1e0afc Release new version 5.0.4 2020-05-27 11:06:30 +10:00
Grahame Grieve ccb6b067b3 Release new version 5.0.3 2020-05-26 06:15:36 +10:00
jamesagnew 444b612805 Start reworking NPM manager 2020-05-24 15:02:37 -04:00
Grahame Grieve b828169317 Fix for Core issue #95 - recursion on profile definition 2020-05-24 08:17:19 +10:00
Grahame Grieve ad82386a9c More questionnaire rendering improvements 2020-05-23 08:16:03 +10:00
Grahame Grieve 3f4d574571 Update Liquid Implementation 2020-05-23 08:15:37 +10:00
Grahame Grieve 50ea83322f Release new version 5.0.2 2020-05-22 08:58:45 +10:00
Grahame Grieve 786aa001c5 fix misleading error message + uppate for new release of tests 2020-05-22 08:17:36 +10:00
Grahame Grieve 130caef348 Add support for Attachment validation + max size and max decimal places validation 2020-05-21 13:22:21 +10:00
Grahame Grieve 5f1889765d add debugging hook for convenience 2020-05-21 13:20:58 +10:00
Grahame Grieve 028d1a6ce9 enhance API for external use 2020-05-20 21:43:39 +10:00
Grahame Grieve 4e6c8ba232 Fix bug not handling slicing/sparse differentials correctly (both snapshot and rendering) 2020-05-20 18:52:11 +10:00