Commit Graph

3065 Commits

Author SHA1 Message Date
Grahame Grieve 8e55d76a2e R6 release support 2023-12-22 21:23:40 +11:00
Grahame Grieve 70af787438 IPS development 2023-12-22 21:23:34 +11:00
Grahame Grieve 073311bbb6 Various fixes to terminology service after reconciliation with Michael Lawley 2023-12-22 21:20:10 +11:00
Grahame Grieve cf4a970e47 Fix bug handling null objects in JSON (R5) 2023-12-22 21:15:08 +11:00
Grahame Grieve 1cdcfb3396 fix bug handling XML name extension 2023-12-22 21:14:40 +11:00
markiantorno d4d7600635 Updating version to: 6.2.8-SNAPSHOT and incrementing test cases dependency. 2023-12-15 13:00:23 +00:00
markiantorno 6c78cc3e48 Release: v6.2.7
## Validator Changes

* Fix up validation of fragment and example value sets
* Improve handling of terminology messages + handling of example and fragment code systems
* Add support for logical_container extension (for CDA constraint validation)
* Clean up handling of xml_name
* Check for xver extension canonical urls when validating uri elements
* Upgrade xver to latest R5 definitions

## Other code changes

* Fix string index error in xver manager
* Fix rendering of type for previous versions
***NO_CI***
2023-12-15 10:50:47 +00:00
Grahame Grieve 09c2c8f81b Improve handling of terminology error and warning messages + handling of example and fragment code systems 2023-12-15 04:21:50 -05:00
Grahame Grieve d59080b45f Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2023-12-15 02:48:27 -05:00
Grahame Grieve ea4ccdf527 Add support for logical_container extension 2023-12-15 02:44:37 -05:00
Grahame Grieve bb020dd739 clean up handling of xml_name 2023-12-15 02:44:07 -05:00
Grahame Grieve 6caef21869 fix up validation of fragment value sets 2023-12-14 20:40:50 -05:00
Grahame Grieve 046e814b07 fix string index error in xver manager 2023-12-14 07:20:33 -05:00
Grahame Grieve 75a3c325ef fix rendering of type for previous versions 2023-12-14 07:20:21 -05:00
markiantorno ceaa131d81 Updating version to: 6.2.7-SNAPSHOT and incrementing test cases dependency. 2023-12-13 19:07:52 +00:00
markiantorno b5902aac98 Release: v6.2.6
## Validator Changes

* Fix bug where validator doesn't actually validate web sourced input
* Fix narrative link validation and add id/idref validation
* Remove fhir-test-cases from Validator CLI JAR (#1497) (reduce size)
* Fix to CDA xsi:type validation per SD decision
* Apply regex pattern to literal format if defined
* Improvements to vital signs related messages
* Fix R4 con-3 FHIRPath expression
* Fix bug loading packages with partially specified version that doesn't exist
* Fix for occasional missing warnings around bundle link validation
* Fix using wrong resource type when validating constraints in data type definitions during R6 build
* Fix NPE in validator processing CCDA examples
* Fix problem with version dependencies when loading npm packages directly as files
* Fix for SearchParameter validation using custom resource types

## Other code changes

* Bump commonmark version
* fix Utilities display of time periods (fixed width hour:min)
* Fix stated path for error when code not in value set
* Fix rendering of trigger definition using tables inside paragraphs
* Update VSAC importer to fix timeout issues
* Refactor FHIRPath java package
* Fix problem with profiled resources being called examples in IG publisher
* Remove dependencies for unused UI experiment (#1465)
* Remove AU connectathon
* Include hamcrest dependency
* Fix breaking ValidationEngineTests
* Give kinder error message for missing param
* Fix commonmark group and bump version (#1500)
* Remove dep used for local testing
* Bump jackson & logback versions
* Fix StringType element properties not being copied in various Address, HumanName convertors
* Handle all initial value types when rendering Questionnaires
* Ensure Address.line[] element data is copied over
* Write locking on FilesystemPackageCacheManager
* Fix problems setting owning committee consistently
* Utility classes for fule system package cache pre-loading
***NO_CI***
2023-12-13 18:41:20 +00:00
dotasek 0afea8dc1d
CLI Task to preload package cache (#1508)
* WIP start building preload task

* Slightly refactor exceptions

* sleep between each query

* WIP - FilesystemPackageCacheManager refactor

* Finish refactor

* Customize PackageVisitor

* Remove unused code

* Remove unused code 2

* Add debug logging for failing test

* Point withCacheFolder if to correct param

* Remove console chatter

* Rename to FilesystemPackageCacheManager.Builder

* Move logic to PackageCacheDownloader for re-use in other projects

* Fix spacing
2023-12-13 11:27:15 -05:00
Grahame Grieve 46e063cc87 Handle all initial value types when rendering Questionnaires 2023-12-13 09:08:32 -05:00
Grahame Grieve 166cb445f8 More fixes for SearchParameter validation 2023-12-12 21:00:31 +13:00
Grahame Grieve cc424a04e1 fix problems setting owning committee consistently 2023-12-12 16:52:11 +13:00
Grahame Grieve 9fae571412 fix NPE in CDA check 2023-12-11 15:37:14 +11:00
Grahame Grieve 4b1488438e missed files 2023-12-11 14:10:26 +11:00
Grahame Grieve 161e92d439 other code 2023-12-06 17:57:35 +11:00
Grahame Grieve f30fda2382 more fixes for R6 build 2023-12-05 16:56:21 +11:00
Grahame Grieve c4f6fe4676 Addressing WG problems in kindling 2023-12-03 20:05:10 +11:00
Grahame Grieve 3eb8ad3ab1 minor vs logging fixes 2023-12-03 20:04:25 +11:00
Grahame Grieve 006958cf88 minor fix for vs rendering 2023-12-03 20:04:11 +11:00
Grahame Grieve 2b232c8b1b Fix stated path for error when code not in value set 2023-12-01 16:55:16 +11:00
Grahame Grieve 694251cb85 fix rendering of trigger definition using tables inside paragraphs 2023-12-01 16:54:54 +11:00
Grahame Grieve 18c4419b9e refactor FHIRPath package 2023-12-01 15:13:33 +11:00
Grahame Grieve 516ec50afa Fix problem with profiled resources being called examples in IG publisher 2023-12-01 10:37:46 +11:00
dotasek 37a8373b94
Fix commonmark group and bump version (#1500)
* Fix commonmark group bump version

* Remove dep used for local testing
2023-11-29 14:47:51 -05:00
dotasek 2ea6d44330 Revert "Fix commonmark group bump version"
This reverts commit 5cf89d8202.
2023-11-27 13:14:18 -05:00
dotasek 5cf89d8202 Fix commonmark group bump version 2023-11-27 11:13:31 -05:00
dotasek a04475ea9c Revert "Fix commonmark group bump version"
This reverts commit 6b45c63638.
2023-11-27 11:10:02 -05:00
dotasek 6b45c63638 Fix commonmark group bump version 2023-11-27 11:06:48 -05:00
markiantorno bf426e2d28 Updating version to: 6.2.6-SNAPSHOT and incrementing test cases dependency. 2023-11-24 19:35:02 +00:00
markiantorno 70d3c801d3 Release: v6.2.5
## Validator Changes

* Fix validator not allowing canonical resource extensions in canonical resources in bundles
* Fix bundle validation error on intneral link checking
* Check parameter type for FHIRPath where() and all()
* Validate that composite search parameters have components

## Other code changes

* Refactor timeout control on client
* Support IPS in validation tests
* Remove orphan R4B test
* Improve expansion error messages
* Fix expansion language - don't set for displayName parameter
* Adjust value set rendering for fragment code systems
* Fix NPE rendering some resources
* Fix rendering of TriggerDefinition
* Support parsing ad-hoc json data type fragments
* More memory work for IG Publisher
* Move ILoggingService & VersionUtil
* Fix timeout issue in vsac
* Introduce ips builder + Infrastructure changes for IPS builder
* Move json and xml extensions from extensions pack to tooling ig
* Add support for rendering union and intersections of profiles in profile comparison
* FHIRPath iif() test case fixes
* Add support for IPS validation in test cases
* Fix for broken markdown re-processing
* Improve identifier rendering
* Fix committee URLs
***NO_CI***
2023-11-24 19:08:02 +00:00
Grahame Grieve 36361eaa1d refactor timeout control on client 2023-11-24 12:06:18 +11:00
Grahame Grieve 5ee11cb3a8 Fix expansion language - don't set for displayName parameter 2023-11-24 08:51:20 +11:00
Grahame Grieve 3cd75ef89e adjust value set rendering for fragment code systems 2023-11-24 08:51:02 +11:00
Grahame Grieve bb9064a8cc fix NPE on some resources 2023-11-24 08:50:46 +11:00
Grahame Grieve 96b7d159a7 Fix rendering of TriggerDefinition 2023-11-24 08:50:21 +11:00
Grahame Grieve 31ffd84667 Checking parameter type for where() and all() 2023-11-24 08:49:59 +11:00
Grahame Grieve 289ab6b29c Support parsing ad-hoc json data type fragments 2023-11-24 08:49:24 +11:00
Grahame Grieve 51ae6a596b More memory work in IGpublisher 2023-11-24 08:48:54 +11:00
Grahame Grieve d1bec7bdba move ILoggingService 2023-11-24 08:47:52 +11:00
Grahame Grieve e8520b1907 Move json and xml extensions from extensions pack to tooling ig 2023-11-22 07:58:50 +11:00
Grahame Grieve 97a778302c Add support for rendering union and intersections of profiles in profile comparison 2023-11-22 07:55:16 +11:00
Grahame Grieve 6aaff35495 fhirpath iif() test case fixes 2023-11-22 07:52:47 +11:00
Grahame Grieve ee02e21710 fix identifier rendering 2023-11-17 07:10:24 +11:00
markiantorno 8fe88a320e Updating version to: 6.2.5-SNAPSHOT and incrementing test cases dependency. 2023-11-15 18:56:03 +00:00
markiantorno 29b1cd98dc Release: v6.2.4
## Validator Changes

* Add support for NZ IPS
* Don't fail on erroneously repeating elements, and more bundle link validation
* Rework bundle references validation
* Fix problem creating CDA type discriminators
* Fix bundle resolution rules to conform to the specification in version R4+

## Other code changes

* Fix issue where markdown with multiple characters was being cut off sometimes
* Fix bundle resolution rules to conform to the specification in version R4+
* More work on versioned API
* Fix up VSAC import for large value sets
* Fix FHIRPath cda tests for empty package cache
* Fix problem with R3 expansion
* Add support for CCDA .hasTemplateIdOf(canonical)
* Fix issue where markdown with multiple characters was being cut off sometimes
***NO_CI***
2023-11-15 18:29:25 +00:00
Grahame Grieve a7e8dc18a1 #1488 - don't fail on erroneously repeating elements, and more bundle link validation 2023-11-15 17:34:13 +11:00
dotasek 4906037448 Fix mockito matcher 2023-11-14 10:08:39 -05:00
Grahame Grieve 6cba0db3ac try to fix mock 2023-11-14 22:22:09 +11:00
Grahame Grieve c65dcd0f26 fix compile error 2023-11-14 15:08:10 +11:00
Grahame Grieve 9f8eeed5f6 more work on versioned API 2023-11-14 14:46:01 +11:00
Grahame Grieve f2dc77272b fix problem creating CDA type discriminators 2023-11-14 12:00:29 +11:00
Grahame Grieve ecd62b6feb fix FHIRPath cda tests for empty package cache 2023-11-14 06:43:29 +11:00
Grahame Grieve 618930e5bf Planning ahead: Add fhirVersion to R5 Base and IWorkerContext methods, and move IContextResourceLoader, ValidationResult and CodingValidationRequest out of IWorkerContext to their own clasess 2023-11-14 06:38:40 +11:00
Grahame Grieve bd1b90b9a5 Add support for CCDA .hasTemplateIdOf(canonical) 2023-11-13 15:00:53 +11:00
Grahame Grieve 90b0e0d3d6 Fix issue where markdown with multiple characters was being cut off sometimes 2023-11-13 07:38:59 +11:00
Grahame Grieve 4c6a318749 Fix bundle resolution rules to conform to the specification in version R4+ 2023-11-13 07:38:31 +11:00
markiantorno c128f3b61d Updating version to: 6.2.4-SNAPSHOT and incrementing test cases dependency. 2023-11-11 06:49:45 +00:00
markiantorno 7cb9286e3f Release: v6.2.3
## Validator Changes

* Remove wrong LOINC code for circumference % from vital signs scan
* Remove spurious error when profile discriminators have no value
* Fix as() and ofType() in FHIRPath engine to support type namespaces properly
* Fix problem with FHIRPath engine wrongly checking types in context of CDA
* Fix date validation error in CDA validation
* Update error handling to preserve message ids properly

## Other code changes

* Add rendering of II.system
* Fix extension handling when generating snapshots - which are ignored, overwrite, or add
* Delete some empty java files
* Remove unnecessary snapshot tests
***NO_CI***
2023-11-11 06:24:19 +00:00
Grahame Grieve cec6425a7f Add rendering of II.system 2023-11-11 08:26:18 +11:00
Grahame Grieve fad683ddaa remove unnecessary snapshot tests 2023-11-10 16:39:43 +11:00
Grahame Grieve 110d627e83 fix problem with FHIRPath engine wrongly checking types in context of CDA 2023-11-10 16:39:05 +11:00
Grahame Grieve eb1940e9c0 fix date validation error in CDA validation 2023-11-09 17:44:40 +11:00
Grahame Grieve dc791becaa update error handling to preserve message ids properly 2023-11-09 16:51:15 +11:00
Grahame Grieve f07a779d36 Fix extension handling when generating snapshots - which are ignored, overwrite, or add 2023-11-09 16:50:13 +11:00
markiantorno c717f898ef Updating version to: 6.2.3-SNAPSHOT and incrementing test cases dependency. 2023-11-07 03:30:21 +00:00
markiantorno 3a7733ea02 Release: v6.2.2
## Validator Changes

* Validate Vital signs Profiles when validating observations
* Hack around problem with vs-1 constraint in R4
* Check for retired status when multiple OID matches exist
* Fix for validating extensions on R5 resources in R4 (R4 special case)
* Minor fixes for standalone ViewDefinition validator

## Other code changes

* Revised Capability Statement rendering (Thanks Vassil Peytchev)
* Fix bug rendering primitive types with an extension that provides a value alternative
* Add links to references when rendering json and xml instances in IG publisher
* Fix bug generating profile spreadsheets
* Support suppress examples when generating snapshots
* VSAC Import improvements
***NO_CI***
2023-11-07 02:46:28 +00:00
Grahame Grieve 80fe954a37
Merge pull request #1480 from vassilpeytchev/master
Enhanced Capability Statement rendering
2023-11-07 11:06:11 +11:00
Grahame Grieve 841de5657e vsac improvements 2023-11-06 20:23:17 +11:00
Grahame Grieve 3fbc88a019 missed code 2023-11-06 07:14:17 +11:00
Grahame Grieve bdc0ff8819 check for retired status when multiple OID matches exist 2023-11-06 07:05:33 +11:00
Grahame Grieve 35c7e18e55 Validate Vital signs Profiles when validating observations 2023-11-05 09:19:39 +11:00
Grahame Grieve 0a1bf05a8e minor fixes for standalone ViewDefinition validator 2023-11-05 09:17:08 +11:00
Grahame Grieve cb8b959322 fix bug generating profile spreadsheets 2023-11-05 09:16:27 +11:00
Grahame Grieve 307ae9b0a0 Fix bug rending primitive types with an extension that provides a value alternative 2023-11-05 09:16:07 +11:00
Grahame Grieve cc7320c3a3 Add links to references when rendering json and xml instances in IG publisher 2023-11-05 09:15:38 +11:00
Grahame Grieve af0c8d8edf Hack around problem with vs-1 constraint in R4 2023-11-05 09:14:43 +11:00
Grahame Grieve b657823373 support suppress examples when generating snapshots 2023-11-05 09:14:20 +11:00
Vassil Peytchev 4c4156d539
Merge branch 'hapifhir:master' into master 2023-11-01 14:44:46 -05:00
markiantorno a47dccc7f6 Updating version to: 6.2.2-SNAPSHOT and incrementing test cases dependency. 2023-10-31 16:23:32 +00:00
markiantorno 3c198658e1 Release: v6.2.1
## Validator Changes

* Validate contextInvariant in extension definitions
* fix Typo in TI WG name
* Handle unknown constants properly in FHIRPath
* Fix handling of type ancestors at the root of FHIRPath expressions
* CDA templates with no extension value use urn:oid: not urn:hl7ii:
* Allow URL as a type of string in FHIRPath type checking
* Fix semver validation
* Fix problem resolving context in CDA invariants

## Other code changes

* Finish SQL in FHIR Implementation, but disable sql on fhir tests until package is packaged properly by next release of IG publisher
* Fixes to Search Parameter rendering per FHIR-I decision
* Fix broken links in extension references done by [[[]]]
* Fix broken links in code system rendering of parents
* Support using names in [[[markdown]]] when rendering
* Remove "profile" from tx operations
* Include checkIPSCodes and bundleValidationRules in json
***NO_CI***
2023-10-31 15:51:40 +00:00
dotasek 7386b2b8f8
Include checkIPSCodes and bundleValidationRules in json (#1473)
+ gentle renaming
2023-10-31 09:49:37 -04:00
Grahame Grieve 1557e52f77 disable sql on fhir tests until package is packaged properly by next release of IG publisher 2023-10-31 17:00:20 +11:00
Grahame Grieve d419d5a5e6 Handle unknown constants properly, and fix handling of type ancestors at the root 2023-10-31 16:59:49 +11:00
Grahame Grieve 5898691293 Fixes to Search Parameter rendering per FHIR-I decision 2023-10-31 16:58:12 +11:00
Grahame Grieve c3f469374a fix broken links in extension references done by [[[]]] 2023-10-31 16:57:42 +11:00
Grahame Grieve 809b2f68ea Fix broken links in code system rendering of parents 2023-10-31 16:57:25 +11:00
Grahame Grieve e4a1a556a2 get sql viewDefinition implementation passing all tests 2023-10-30 23:59:35 +11:00
Vassil Peytchev c173df9f5b Updates for Capability Statement rendering 2023-10-27 15:03:19 -05:00
Grahame Grieve 903d4c9d66 Support using names in [[[markdown]]] when rendering 2023-10-28 06:37:06 +11:00
Grahame Grieve 892b124259 Fix problem resolving context in CDA invariants 2023-10-28 06:36:16 +11:00
Grahame Grieve 83f0009f2d remove "profile" from tx operations 2023-10-28 06:35:52 +11:00
Grahame Grieve a327f0312e code clean up 2023-10-28 06:35:20 +11:00