Commit Graph

1347 Commits

Author SHA1 Message Date
markiantorno 46259c47e0 Updating version to: 6.0.1-SNAPSHOT and incrementing test cases dependency. 2023-04-26 23:45:01 +00:00
markiantorno 5a4049e0e2 Release: v6.0.0
## Validator Changes

Note: This validator release is accompanied by a new release of tx.fhir.org, and earlier versions
of the validator will not perform validation correctly for some valuesets and languages. This is
in effect a mandatory upgrade

* Major **Breaking** change: test multi-lanugage support on the terminology service API, and make many fixes.
** This release also includes full support for supplements providing designations and properties
* Add support for -install operation to install packages and generate snapshots while at it (support simplifier packages in sushi)
* Add support for ```lang-transform extract``` and ```-lang-transform inject``` to the validator (start of multi-lingual implementation support)
* Add support for -tx-tests to validator
* Change settings file to fhir-settings.json in .fhir, instead of fhir-tools-setting.ini (see [here](https://confluence.hl7.org/display/FHIR/Using+fhir-settings.json) for documentation)
* Add provisional support for running without a network: -no-network. Beware: this is not fully tested at this point
* Warning not error when the code system isn't known validating questionnaires
* Fix up loading of IG bundles
* Work around issue with R5 path in extensions pack
* Fix issue with SearchParameter validation throwing an exception if no expressions are valid

## Other code changes

* Code to support translation functionality
* Partial fix for problem parsing maps from previous versions
* Fix Code System rendering for supplements, and when there's 1..2 display translations
* Remove spurious header from ConceptMap rendering
* Return ID part correctly when FhirPath expression result is converted to string
* fix problem with leaf rendering in profile driven renderer
* Fix R4B tests to be based on R4B
* fix index error validating HierarchicalTable
* fix NPE in requirements renderer
* Fix NPE in code generator
* Rework package cache manager - add testing mode
* Add link to questionnaire rendering questionnaireResponse + Fix access violation rendering questionnaire
* Fix bugs generating narratives
* Defining the existence of R6
* i18n framework for HTML generation in renderers - step #1
* Re-org validation testing to be more memory efficient
* Better error handling loading resources
* Restore broken R4 loading
* Add new R5 fields to R4/R5 conversion for ValueSet
* minor changes two HumanName.getNameAsSingleString (missed family name)
***NO_CI***
2023-04-26 23:16:02 +00:00
Grahame Grieve f3182b9781 Merge remote-tracking branch 'origin/master' 2023-04-27 08:01:03 +10:00
Grahame Grieve 085ddde843 bump major version 2023-04-27 08:00:56 +10:00
Grahame Grieve 6bd3ee2644
Merge pull request #1226 from hapifhir/do-20230414-subscription-conversions
Add SubscriptionTopic and SubscriptionStatus conversions for R4B <-> R5
2023-04-27 07:54:33 +10:00
dotasek 5683f10d92 Add missing fields 2 2023-04-26 17:17:29 -04:00
dotasek a006b194c1 Add missing fields to r5-r4b 1 2023-04-26 14:27:00 -04:00
dotasek 437430de39 Use Integer64_43_50 for eventNumber conversion
+ delete dead code
2023-04-25 17:58:36 -04:00
Grahame Grieve fe86ab1d7c reorg server settings 2023-04-21 18:52:36 +08:00
dotasek 13099f513d Fix typo 2023-04-19 15:55:28 -04:00
dotasek 16cd20a022 Undo some IntelliJ wildcards
Make classes explicitly from a package inline, otherwise, mid-class, all these things get confusing.
2023-04-18 17:19:38 -04:00
dotasek e34411d4e5 Convert modifiers and comparators 2023-04-18 17:13:46 -04:00
dotasek b740c8f998 Use Enumeration<> factories and methods instead of direct values 2023-04-18 13:59:28 -04:00
dotasek 99a937c737 Implement conversion 2023-04-18 11:32:58 -04:00
dotasek d8ac44fee4 More test prep, start conversion work 2023-04-17 18:12:55 -04:00
dotasek 9c3e3c918e Add another subscription status test example 2023-04-17 17:52:20 -04:00
dotasek 4494a6f757 Expand with actual use case test 2023-04-17 17:24:19 -04:00
dotasek 8ab4e8e73a Minimize test case, get test running. 2023-04-17 17:18:03 -04:00
dotasek 08b92582a3 More work. 2023-04-17 10:09:37 -04:00
dotasek b6fc63ea94 Convert as resource 2023-04-14 15:21:46 -04:00
dotasek 23399d835f Add r4b test sources 2023-04-14 15:21:33 -04:00
dotasek a734a2f819 WIP SubscriptionTopic conversion tests + initial work 2023-04-14 09:37:09 -04:00
Grahame Grieve 48e86fa905 fix failing tests 2023-04-14 22:39:48 +10:00
Grahame Grieve c9416e9a56 Merge remote-tracking branch 'origin/master' 2023-04-14 18:01:18 +10:00
Grahame Grieve 6ac00b8c68 rework terminology interface 2023-04-14 17:59:06 +10:00
Grahame Grieve 730a199f7a fix R4/R5 conversion issues 2023-04-08 15:06:09 +10:00
dotasek c4f8b65ba4
JUnit Bump (#1204)
* Bump JUnit Version and manage dependencies via bom

* Bump JUnit Version and manage dependencies via bom

* Remove explicit version references in child projects

* Vintage engine isn't managed. Manage it explicitly
2023-04-04 22:39:03 -04:00
Grahame Grieve 0bbff8d14d rework package cache manager - add testing mode 2023-04-02 23:06:29 +10:00
Grahame Grieve e59c83855d Defining the existence of R6 2023-04-01 07:32:02 +11:00
markiantorno aa8cb39580 Updating version to: 5.6.118-SNAPSHOT and incrementing test cases dependency. 2023-03-29 14:03:26 +00:00
markiantorno 3c04b80fdb Release: v5.6.117
## Validator Changes

* no changes

## Other code changes

* Fix R5 path for spec in generated narratives
* Hack to fix wrong R5 paths in generated narratives in extensions pack
* Suppress Prism rendering if ttl source is too big
* Fix up URLs in untouched elements when processing snapshots
* Fix up URLs in binding.description when generating snapshots
***NO_CI***
2023-03-29 13:36:02 +00:00
markiantorno 7928c858bb Updating version to: 5.6.117-SNAPSHOT and incrementing test cases dependency. 2023-03-27 23:58:35 +00:00
markiantorno 9f671be87b Release: v5.6.116
## Validator Changes

* Make checking displays in concept map not case sensitive and just a warning

## Other code changes

* Fix loading version of extensions package in test cases
* Don't suppress error when FML doesn't parse in FMLParser
* Add PathBuilder (documentation + clean up code)
***NO_CI***
2023-03-27 23:33:00 +00:00
markiantorno 794a9c46b6 Updating version to: 5.6.116-SNAPSHOT and incrementing test cases dependency. 2023-03-25 12:24:55 +00:00
markiantorno e68a6171ee Release: v5.6.115
Final Code changes for R5 release

## Validator Changes

* Fix NPE validating maps

## Other code changes

* Refactor Loader for easier loading of earlier versions
* Fix various NPEs from version conversion testing
* First draft of Code generation for Extensions
* Improve summary message for map conversion outcome
* Move web path out of userData into resource field
* Fix FTP problem on windows (remote seperator)
* Update tests to use R5 package from test case repo everywhere
* Finish removing population type
* Rebuild .index.json if it's empty when installing a package
***NO_CI***
2023-03-25 11:55:37 +00:00
Grahame Grieve ce75d57808 fix extension status and extension generator 2023-03-25 21:54:53 +11:00
Grahame Grieve 272f00e786 move web path out of user data into resource field 2023-03-24 22:18:52 +11:00
Grahame Grieve fcd6484657 finish removing population type 2023-03-24 10:17:48 +11:00
Grahame Grieve f122dc164f update code for R5 final 2023-03-23 20:48:38 +11:00
markiantorno ce2480a745 Updating version to: 5.6.115-SNAPSHOT and incrementing test cases dependency. 2023-03-22 14:12:23 +00:00
markiantorno 7736f31847 Release: v5.6.114
## Validator Changes

* Fix up stated path in CodeSystemValidator
* Validate example URLs in value sets correctly
* Fix problem with composition library reference in R4

## Other code changes

* More work to sort out mappings
* Fix broken links in FMM & standards status levels
* Fix type of IG-parameter extension
* FTP: Stop re-initializing file type and mode with each upload (#1178)  …
* Fix snaphot generation warning when when profile-element is used
* fix path failure in tests
* Inline help16.png when generating narrative
* Suppress img.src=data content when rendering narrative
* Suppress value set expansion for core value sets that tx.fhir.org is getting wrong
* Fix NPE in profile comparison
***NO_CI***
2023-03-22 13:46:22 +00:00
Grahame Grieve 037f74964e fix type of extension 2023-03-22 13:44:29 +11:00
Grahame Grieve 851d9c149d Merge remote-tracking branch 'origin/master' 2023-03-21 17:41:52 +11:00
Grahame Grieve 98a7f26b84 fix problem with composition library reference in R4 2023-03-21 17:25:45 +11:00
markiantorno 8878bc9cef Updating version to: 5.6.114-SNAPSHOT and incrementing test cases dependency. 2023-03-21 00:29:38 +00:00
markiantorno 950c781ffc Release: v5.6.113
## Validator Changes

* Fix problems validating variables
* No longer ignore hl7.org/fhir/tools when validating

## Other code changes

* Fixed bug with incorrect parameter type when POSTing a $validate-code request to a remote terminology server
* Fix OS issue with zipslip protection
* Fix for where profile_element extension was being ignored when checking types after snapshot generation
* Fix generated name for FML rules to be a valid name
* Allow loaders to decide which resources to load into the context
***NO_CI***
2023-03-21 00:00:30 +00:00
Grahame Grieve 11c80f7d00 allow loaders to decide which resources to load into the context 2023-03-21 06:03:36 +11:00
markiantorno 2a877b6faa Updating version to: 5.6.113-SNAPSHOT and incrementing test cases dependency. 2023-03-19 04:45:57 +00:00
markiantorno 59d8cf0bee Release: v5.6.112
## Validator Changes

* Don't validate codes in value sets if terminology vlidation is turned…  …
* Fix nPE validating bundles

## Other code changes

* Add file: to URL scheme list when checking for absolute URLs
* Adjust mappings handling code generating snapshots
* More improvements to r4/r5 transform testing
* Better error messages setting properties when transforming
* Better error messages converting types
* FHIRPath tests on element model
* Refactor FTPClient to perform fewer directory creates (#1159)  …
* Document how to build validator_cli locally (#1171)
***NO_CI***
2023-03-19 04:17:32 +00:00
markiantorno 90bcab6554 Updating version to: 5.6.112-SNAPSHOT and incrementing test cases dependency. 2023-03-16 11:24:39 +00:00
markiantorno 7a9e5444c5 Release: v5.6.111
## Validator Changes

* Fixing issues parsing Bundle.issues in R5

## Other code changes

* Fix bugs handling XHTML
* Refactor package loading API - List(String) instead of String[]
***NO_CI***
2023-03-16 10:56:41 +00:00
Grahame Grieve 19cb639d37 refactor how types are handled loading packages 2023-03-16 13:26:34 +11:00
markiantorno 2e36c8147a Updating version to: 5.6.111-SNAPSHOT and incrementing test cases dependency. 2023-03-14 12:43:23 +00:00
markiantorno e2967d923c Release: v5.6.110
## Validator Changes

* no changes

## Other code changes

* Fix NPE in string handling
***NO_CI***
2023-03-14 12:18:03 +00:00
markiantorno b5bbe5108b Updating version to: 5.6.110-SNAPSHOT and incrementing test cases dependency. 2023-03-13 05:16:16 +00:00
markiantorno f48d413690 Release: v5.6.109
## Validator Changes

* Add format codes ```md``` and ```url``` to FHIRPath escape() and unescape()
* Add second parameter ```s_last``` to FHIRPath join() to use a different separator for the last time (e.g. ```.join(', ', 'and')```)

## Other code changes

* Parse status when parsing FML metadata
* Fix NPE in FHIRPath resolve() for contained resources ([discussion](https://chat.fhir.org/#narrow/stream/179167-hapi/topic/fix.20to.20FHIRPathEngine))
***NO_CI***
2023-03-13 04:45:19 +00:00
Grahame Grieve 753a90b463 fix bug listing types when old versions are loaded 2023-03-13 13:52:31 +11:00
markiantorno 209fcc8c0b Updating version to: 5.6.109-SNAPSHOT and incrementing test cases dependency. 2023-03-11 12:16:50 +00:00
markiantorno 35fb1b20c1 Release: v5.6.108
## Validator Changes

* no changes

## Other code changes

* Tdy up extensions for R5 release
* Hack R5 observation for fix after QA
* Improve StructureMap rendering again
* Clarify Error messages converting between versions
***NO_CI***
2023-03-11 11:49:55 +00:00
Grahame Grieve 2ca6dc86f1 clarify error message when resource can't be converted between versions 2023-03-11 10:47:13 +11:00
markiantorno a3a9017bdb Updating version to: 5.6.108-SNAPSHOT and incrementing test cases dependency. 2023-03-10 13:09:53 +00:00
markiantorno 1e43fe43f0 Release: v5.6.107
## Validator Changes

* Add support for new ColorRGB code system (special case)

## Other code changes

* Add support for special case code systems internally
***NO_CI***
2023-03-10 12:44:48 +00:00
markiantorno a3473354fd Updating version to: 5.6.107-SNAPSHOT and incrementing test cases dependency. 2023-03-09 21:19:20 +00:00
markiantorno d666d0aa80 Release: v5.6.106
## Validator Changes

* no changes

## Other code changes

* Additional checks in path construction for zip slip vulnerability
***NO_CI***
2023-03-09 20:50:18 +00:00
markiantorno f49eee623b Updating version to: 5.6.106-SNAPSHOT and incrementing test cases dependency. 2023-03-09 13:06:01 +00:00
markiantorno 0b8e2c3984 Release: v5.6.105
## Validator Changes

* More validation of StructureMaps

## Other code changes

* Add new R5 version to R4 version enumeration
* Fix for NPE generating profile comparison
* Add FML renderer for StructureMaps + various parsing fixes
***NO_CI***
2023-03-09 12:38:13 +00:00
Grahame Grieve fdbe28fb13 fix R5 version issues in R4 2023-03-09 22:19:50 +11:00
markiantorno 8bd83810ea Updating version to: 5.6.105-SNAPSHOT and incrementing test cases dependency. 2023-03-08 08:23:43 +00:00
markiantorno 2a2fc497c7 Release: v5.6.104
## Validator Changes

* Fix up issues validating whitespace
* Multiple fixes to StructureMap and ConceptMap validation

## Other code changes

* rename ig-r4.json to ig-r4.jsonx in IGs
* move R5 package to test cases
***NO_CI***
2023-03-08 07:53:54 +00:00
Grahame Grieve 6870c7a32c
Merge pull request #1157 from hapifhir/gg-202303-qa-sm-validation-5
Gg 202303 qa sm validation 5
2023-03-08 10:10:55 +11:00
Grahame Grieve a736979d09 fix patch urls with regard to contentReference 2023-03-08 09:10:52 +11:00
markiantorno d4d160eb29 Updating version to: 5.6.104-SNAPSHOT and incrementing test cases dependency. 2023-03-07 16:31:22 +00:00
markiantorno b18181ab7e Release: v5.6.103
## Validator Changes

* Fix structure map validation issues around type
* Revise whitespace handling for unicode conformance in validator
* Improved error message for output directory requirements
* Improve compact version sorting in renderer
* Add timestamp to compact format

## Other code changes

* Fix JSON escaping utility function
* Bug fixes in XHTML processing.
* Convertors: Bug Fixes in spec evaluation
* Convertors: patchUrls now patches fhir-type extension values
* R5: Fix FML parsing missing locations
* R5: Fix location bugs in FML parsing
***NO_CI***
2023-03-07 16:03:02 +00:00
Grahame Grieve 453f073411 rename ig-r4.json to ig-r4.jsonx 2023-03-07 20:57:27 +11:00
Grahame Grieve 46d3faab99 patchUrls now patches fhir-type extension values 2023-03-07 20:56:45 +11:00
Grahame Grieve 5eca02f879 bug fixes 2023-03-06 23:33:38 +11:00
markiantorno 8a546d37eb Updating version to: 5.6.103-SNAPSHOT and incrementing test cases dependency. 2023-03-06 12:05:52 +00:00
markiantorno a7507e9887 Release: v5.6.102
## Validator Changes

* Add ConceptMap validation
* Add StructureMap validation
* Validate using type regex (had been omitted to now, mostly affects decimal validation)
* Add new -output-style values compact and compact-split
* Fix bug validating CDA choice elements without [x] in their names

## Other code changes

* Various fixes and utilities to support StructureMap & ConceptMap validation
* Fix Observation.value conversion between R5 and other versions
* Recognise R4B and R5 core packages
* Improvements to specification diffference engine for R5 publication
* More efficient XHTML AST model
***NO_CI***
2023-03-06 11:39:27 +00:00
Grahame Grieve adafa7eec8 Improve Specification Difference Engine 2023-03-06 16:55:02 +11:00
Grahame Grieve bf202870d9 Merge remote-tracking branch 'origin/master' 2023-03-06 06:20:01 +11:00
Grahame Grieve 472fb19542 More fixing Observation conversion between versions for R5 2023-03-05 06:13:10 +11:00
markiantorno ebd93f570f Updating version to: 5.6.102-SNAPSHOT and incrementing test cases dependency. 2023-03-03 04:08:44 +00:00
markiantorno f317bb15f6 Release: v5.6.101
## Validator Changes

* Fix NPE in Structure Map validation

## Other code changes

* Add back code missed when regenerating R5
* Update conversions for discovered issues for R5
***NO_CI***
2023-03-03 03:21:09 +00:00
Grahame Grieve b18e541b5f
Gg 202303 r5 fixes (#1148)
* update test package dependency

* Add back code missed when regenerating R5

* fix NPE

* update conversions for discovered issues for R5

---------

Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
2023-03-02 18:35:33 -05:00
Grahame Grieve 8ac01bd5a4 update conversions for discovered issues for R5 2023-03-03 06:30:49 +11:00
markiantorno da62438802 Updating version to: 5.6.101-SNAPSHOT and incrementing test cases dependency. 2023-03-02 03:50:02 +00:00
markiantorno 578b964cf9 Release: v5.6.100
## Major change:

* New R5 release - rebuild R5 implementation, update a lot of related code

## Validator Changes

* Load separate R5 extensions package
* Load FML directly, and validate mapping as much as possible

## Other code changes

* Fix bugs in Java R5 code generator
* Add more control at the code level over how to handle unknown profiles when generating snapshots
* Rework ConceptMap for major R5 changes
* Fix bug in CommaGeneratedStringBuilder (calling toString() multiple times duplicated content)
* handle case [reference].where(resolve() is X) when analysing types+elements in FHIRPath statements
***NO_CI***
2023-03-02 03:21:29 +00:00
Grahame Grieve 7cf15f248d update version conversions for new version of R5 2023-03-01 21:50:02 +11:00
Grahame Grieve c5d6e0f5f4 Merge remote-tracking branch 'origin/master' 2023-02-28 05:58:54 +11:00
Grahame Grieve 4c30621491 structuremap validation and invariant fixes for forthcoming R5 release 2023-02-27 18:32:38 +11:00
Grahame Grieve a62c8683f2
Merge pull request #1139 from hapifhir/gg-202302-map-validation-2
Work on StructureMap validation
2023-02-27 09:14:13 +11:00
Grahame Grieve 2bd73c650e Work on StructureMap validation 2023-02-27 07:30:04 +11:00
dotasek 76c01a98aa
Add basic checkstyle plugin config (#1122)
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-02-24 15:05:49 -05:00
markiantorno e9607783da Updating version to: 5.6.100-SNAPSHOT and incrementing test cases dependency. 2023-02-23 18:15:08 +00:00
markiantorno e2185d7d5c Release: v5.6.99
## Validator Changes

* Fix validation for query references with empty parameter values
* Fix validation for conditional references

## Other code changes

* Fix resource rendering for conditional references
* Fix bug caused by changing DiagnosticReport.conclusion to markdown
* Track target types on references in FHIRPath
* Minor type checking fixes for FHIRPath
* Fix bugs in FHIRPath type checking discovered during R5 preparation
* Add standardsStatus support to core model
* Update okhttp library
* Allow HTTPS for terminology server URL
* Update table generator to suppress external links in base row and column
***NO_CI***
2023-02-23 17:50:57 +00:00
dotasek 5d6636ba8c
Bump okhttp version (#1131)
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-02-23 11:14:50 -05:00
dotasek 34b1bd05c5
Fix https for terminology server (#1118)
* Failing test

* Missing bracket

* Fix issue with https tx server

* Expand test coverage

* Bump maven-jar-plugin

Maybe fix build problem?

---------

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-02-17 10:02:49 -05:00
markiantorno 9c768415f2 Updating version to: 5.6.99-SNAPSHOT and incrementing test cases dependency. 2023-02-15 10:37:45 +00:00
markiantorno 7ec74d0321 Release: v5.6.98
## Validator Changes

* Fix bug checking canonical URLs in bundles with dashes in them
* Fix extension messages (modifier and normal messages reversed)
* Change how error location paths are reported in bundles for easier resolution (no counting!)
* fix bugs checking whether binding is allowed in corner cases

## Other code changes

* Rendering Improvements: Additional Bindings, Search Parameters, Operation Definitions
* FHIRPath implementations for comparable(), highBoundary(), lowBoundary()
* Fix list of canonical resources from VersionUtilities
* Fix bug parsing html entities in XHTML parser
* Rename extension to http://hl7.org/fhir/StructureDefinition/structuredefinition-imposeProfile
***NO_CI***
2023-02-15 10:13:36 +00:00
markiantorno 97604fdff5 Updating version to: 5.6.98-SNAPSHOT and incrementing test cases dependency. 2023-02-07 12:55:19 +00:00
markiantorno c91376f3b9 Release: v5.6.97
## Validator Changes

* no changes

## Other code changes

* Fix for Extensions moving in R5
***NO_CI***
2023-02-07 12:28:44 +00:00
markiantorno eec7c33e63 Updating version to: 5.6.97-SNAPSHOT and incrementing test cases dependency. 2023-02-05 21:04:53 +00:00
markiantorno 729e7afb33 Release: v5.6.96
## Validator Changes

* no changes

## Other code changes

* Fix bug with duplicate value in getResourceNames()
***NO_CI***
2023-02-05 20:42:24 +00:00
markiantorno b3cebe7bc6 Updating version to: 5.6.96-SNAPSHOT and incrementing test cases dependency. 2023-02-03 20:09:35 +00:00
markiantorno 1696b56b50 Release: v5.6.95
## Validator Changes

* Fixes for FHIRPath as() operator in r4 and r5

## Other code changes

* no changes
***NO_CI***
2023-02-03 19:45:12 +00:00
Grahame Grieve ea9333b322
Gg 202302 fhirpath as (#1102)
* fix type of issue source extension

* update extension extractor

* FHIRPath changes for as - case and singleton issues

* minor fixes for extension rendering

* Update test cases version

---------

Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-02-03 13:14:51 -05:00
markiantorno ea41a8b6a6 Updating version to: 5.6.95-SNAPSHOT and incrementing test cases dependency. 2023-02-02 17:07:22 +00:00
markiantorno 67329e20ad Release: v5.6.94
## Validator Changes

* no changes

## Other code changes

* Test release
***NO_CI***
2023-02-02 16:34:58 +00:00
markiantorno e922cc2a97 Updating version to: 5.6.94-SNAPSHOT and incrementing test cases dependency. 2023-02-01 07:27:59 +00:00
markiantorno 4e97bb0d5a Release: v5.6.93
## Validator Changes

* Fix for NPE rendering resources
* Consider CanonicalResource to be a CanonicalResource when validating profile references
* Work around error in R5 sdf-29 invariant

## Other code changes

* XHTML processing: Cater for "." in XML element and attribute names
* Handle R3 encoding of primitive values when validating profiles
* Improve error messaging when validating StructureDefinition
* Temporary Support for MedicationStatement in R5
* Work around for Identifier.use = ? in THO R5 package (old error)
* Rework Package API to allow for authentication on package servers
* Structure mapping now finds source Structure Definition by URI and sets ParserBase logical property appropriately.
* DOn't convert ig-r4 when converting package versions
***NO_CI***
2023-02-01 07:02:20 +00:00
Grahame Grieve 107fa0e3a2 update extension extractor 2023-02-01 14:48:48 +11:00
Grahame Grieve f9b386d5b2 r5 extension extractor 2023-01-31 16:54:30 +11:00
Grahame Grieve 373abb7dcc ignore ig-r4 when converting for generated package versions 2023-01-31 16:06:51 +11:00
Grahame Grieve 08ed54fd35 Rework Package API to allow for authentication on package servers 2023-01-31 10:32:21 +11:00
Grahame Grieve d859e0b4bd Temporary Support for MedicationStatement in R5 (going to be renamed again) 2023-01-31 07:22:33 +11:00
dotasek cca38587ce
Cleanup jetbrains annotations (#1090)
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-01-23 18:27:47 -05:00
markiantorno cb441456a8 Updating version to: 5.6.93-SNAPSHOT and incrementing test cases dependency. 2023-01-20 23:14:26 +00:00
markiantorno dc677cad51 Release: v5.6.92
## Validator Changes

* update FHIRPath implementation for corrections to 'as' (R5 only in validator)
* Critical Security fix: enforce correct paths when unpacking archives (SecurityAdvisory-1082, CVE TBA)

## Other code changes

* Update to latest FHIRPath for older versions
* Add new ElementModel based parser for StructureMaps
* go-publish related changes
* FTP Client upload and logging improvements
* Refactor base64 handling for Android compatibility

## Security Note

The validator unzips archive files to the local file system when
it is scanning zip files it has been asked to validate, and when it is
installing packages. These processes are now resistant to the zip-slip
vulnerability.
***NO_CI***
2023-01-20 22:57:29 +00:00
dotasek b50aec5912
Advisory fix 1 (#1089)
* Update cache and comparison downloads to use https

* Zip Slip tests and fix

* Zip Slip tests 2 and fix

* Add missing tempDir child in ScannerTest

* Add win format zip test

* Add tests to r4b

* Add tests and fixes for slips in tgz processing

* Update fhir-test-cases version
2023-01-20 16:56:57 -05:00
markiantorno 4367813a2c Updating version to: 5.6.92-SNAPSHOT and incrementing test cases dependency. 2023-01-17 21:59:38 +00:00
markiantorno 7b22d0355b Release: v5.6.91
## Validator Changes

* Fixed validation of URNs
* Check profiles don't have slicing on roof

## Other code changes

* Fix significant performance issue with profile xls generation
* Fix issue with setProperty dropping extensions in R3 - R5
* Debug logging improvements generating snapshots
* Fix issues with types missing in CDA IGs
* Fix problem converting ActivityDefinition R4(B)/R5
* More work on FTP Client
***NO_CI***
2023-01-17 21:40:28 +00:00
Grahame Grieve 7b99037199 fix BOM in java files 2023-01-17 12:49:14 +11:00
Grahame Grieve abf2e99ab6 Merge remote-tracking branch 'origin/master' 2023-01-16 10:53:57 +11:00
Grahame Grieve cf4e2f2eaf Fix problem converting ActivityDefinition R4/R5 2023-01-16 10:17:30 +11:00
markiantorno c52777c462 Updating version to: 5.6.91-SNAPSHOT and incrementing test cases dependency. 2023-01-14 06:35:33 +00:00
markiantorno ac16aae300 Release: v5.6.90
## Validator Changes

* Better tracking and reporting of snapshot generation issues
* Update FHIRPath implementation to R4 with all corrections and extensions from R5 implemnetation

## Other code changes

* Inclusion of SAXON dependency for processing XSLT
* Error message spacing correction
* Basic FTPClient implementation
* test NPE in markdown processing
* go-publish support
* Start implementing loading structure maps with validation
***NO_CI***
2023-01-14 06:17:06 +00:00
dotasek 02cdad6f68
Clean up FIXMEs and out chatter (#1062)
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-01-09 10:55:45 -05:00
dotasek 12c05604b4 Normalize line separators 2023-01-06 14:13:07 -05:00
markiantorno b6cec730b5 Updating version to: 5.6.90-SNAPSHOT and incrementing test cases dependency. 2023-01-06 02:08:34 +00:00
markiantorno a6745a9016 Release: v5.6.89
## Validator Changes

* Add support for fhir_comments in R2/R2B
* Add validator checking around versions in extension URLs
* Fix bug generating cross-version extensions

## Other code changes

* Fix minor NPEs running IG publisher
* Add new PE module (PEDefinition/PEInstance)
* Add support for liquid filters (resolve FHIRPath conflict)
* Fix up round-tripping of XPath constraints R4/R5
* Refactor R5 ProfileUtilities (and move rendering to rendering package)
* Fix appending text when generating snapshots
***NO_CI***
2023-01-06 01:51:20 +00:00
Grahame Grieve ead7eadfc0 fix test setup 2022-12-26 20:47:33 +13:00
Grahame Grieve 0827dc32f1 Merge remote-tracking branch 'origin/master' 2022-12-24 07:29:17 +13:00
dotasek b404c89aa9
Profile Utilities Refactor 2 (#1047)
* Add test util for diff

* Start moving pathprocessor params into dedicated object

* Move diff to Params

* Move base and diff Limits to params

* Rename to newBaseCursor and newBaseLimit

* More renames

* Move url and webUrl to params

* Move profileName to params

* Add contextPathSource to params, adjust indent for processPaths calls

* Move contextPathTarget to params

* Code cleanup, unused variables + move trimDifferential to params

* Create PathSlicingParams

* Shuffle param order

* Move redirector to params

* Move sourceStructureDefinition to params

* Move derived to params

* Move debug statements to dedicated methods

* split processSimplePath

* split processPathWithSlicedBase

* Start splitting ProfilePathProcessor

* Move all params into ProfilePathProcessor

* Move all profile utility related classes to own package

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-12-23 09:27:42 -05:00
Grahame Grieve fd77fd16d0 round trip constraint xpath after R5 changes 2022-12-23 15:14:25 +13:00
markiantorno aaa5c9d6a4 Updating version to: 5.6.89-SNAPSHOT and incrementing test cases dependency. 2022-12-16 01:40:27 +00:00
markiantorno a3a1e79674 Release: v5.6.88
## Validator Changes

* Remove use of .fhir/package-client cache (only use the main .fhir/package now)

## Other code changes

* Hack work around for broken template input for R5 OperationOutcome
* Fix up problems with test case consistency in R5 test cases
* Add R5-snapshot3 version enum to R4 version list
***NO_CI***
2022-12-16 01:19:52 +00:00
Grahame Grieve 415d8acc12 Add R5 snapshot3 to R4 versions enum 2022-12-16 08:48:24 +11:00
markiantorno ba67d790b8 Updating version to: 5.6.88-SNAPSHOT and incrementing test cases dependency. 2022-12-14 03:25:16 +00:00
markiantorno 6d8cd59f1e Release: v5.6.87
## Validator Changes

* Change Java minimum version from 8 to 11
* Fix Error message missing parameter (very minor fix)

## Other code changes

* Refactoring package-list.json handling
* Upgrade code to latest R5 release (Snapshot 3)
* Fix bug with version patching loading package for the first time + fix bug determining spec reference
* Add Ids to profile spreadsheets
***NO_CI***
2022-12-14 02:48:33 +00:00
Grahame Grieve 659457bb65
Merge branch 'master' into gg-202212-r5-update 2022-12-14 11:55:31 +11:00
Grahame Grieve 38c4785236 reverse SearchParameter.base change 2022-12-14 06:29:21 +11:00
Grahame Grieve aa2481fcfb fix test case 2022-12-13 21:21:12 +11:00
Grahame Grieve d1d391496e upgrade to new R5 release 2022-12-13 21:13:29 +11:00
markiantorno 0e619971c4 Updating version to: 5.6.87-SNAPSHOT and incrementing test cases dependency. 2022-12-12 20:14:04 +00:00
markiantorno bbf74e6f91 Release: v5.6.86
## Validator Changes

* Change Java minimum version from 8 to 11
* Fix Error message missing parameter (very minor fix)

## Other code changes

* Refactoring package-list.json handling
***NO_CI***
2022-12-12 19:56:58 +00:00
markiantorno 915d5e89b7 Updating version to: 5.6.86-SNAPSHOT and incrementing test cases dependency. 2022-12-09 18:40:17 +00:00
markiantorno c01a9444a4 Release: v5.6.85
## Validator Changes

* Change rules around Document and Link Message validation (see [Jira](https://jira.hl7.org/browse/FHIR-39502) and [Zulip](https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/Entry.20isn't.20reachable.20by.20traversing.20from.20first.20Bundle.20entry) for details)
* Allow https://example in questionnaire example links

## Other code changes

* Rendering Improvements for deprecated codes Including deprecation reason
* Add Accept header fetching JSON
* Fix version comparison bug
* Fixes for producing profile summary in IGs
* Add contents to .index.json and bump to v2
* Fix stated package & version in alternate versions packages
* Refactor ProfileUtilities.generateSnapshot
* Fix bug in XHTML generation around empty tags
* Fix NPE appending slashes
* Fix rendering timing to not use a specific verb
* Fix R2 - RX ValueSet convertor for Code Systems
***NO_CI***
2022-12-09 18:23:37 +00:00
Grahame Grieve cdfc93052b Fix stated package in alternate version packages 2022-12-06 16:21:06 +11:00
Grahame Grieve 9c0732158b fully convert package version 2022-12-05 13:40:03 +11:00
Grahame Grieve 21102fa8d7 fix version converter for code systems 2022-12-05 13:38:17 +11:00
markiantorno 7966deb05c Updating version to: 5.6.85-SNAPSHOT and incrementing test cases dependency. 2022-12-01 05:52:06 +00:00
markiantorno b0d3dae149 Release: v5.6.84
## Validator Changes

* Perform canonical resolution using package dependencies even for version specific references (workaround for VSAC bad behaviour)

## Other code changes

* Fix conversion between R3 andR4/R5 for Immunization.notGiven
* Fix parameter handling for tx server responses
* Add cast support for more types in FML implementation
* Fixes to GQL Schema generation
***NO_CI***
2022-12-01 05:35:31 +00:00
Grahame Grieve c3cb8adf97
Merge pull request #1016 from hapifhir/do-immunization30_40-notgiven
Fix handling of Immunization notGiven and status
2022-12-01 08:19:38 +11:00
dotasek 196862b6b2 Ignore notGiven extension + refactor 2022-11-30 10:09:04 -05:00
markiantorno 19e957ef53 Updating version to: 5.6.84-SNAPSHOT and incrementing test cases dependency. 2022-11-29 23:46:32 +00:00
markiantorno b939b33040 Release: v5.6.83
## Validator Changes

* no changes

## Other code changes

* Update FHIR test cases to released version
***NO_CI***
2022-11-29 23:29:15 +00:00
dotasek 69db452501 Expand tests, fix breaks 2022-11-29 14:28:10 -05:00
markiantorno ab00f53ee7 Updating version to: 5.6.83-SNAPSHOT and incrementing test cases dependency. 2022-11-29 18:22:35 +00:00
markiantorno b11bf21f9b Release: v5.6.82
## Validator Changes

* no changes

## Other code changes

* Fix Turtle generation
***NO_CI***
2022-11-29 18:05:15 +00:00
dotasek 2daeaec173 Rename 2022-11-29 12:44:07 -05:00
dotasek 8d485c0f34 Expand tests, fix break 2022-11-28 18:47:58 -05:00
dotasek fce80bb9b1 Fix unnecessary switch. Refactor tests. 2022-11-28 18:28:34 -05:00
dotasek 9e6700d9a9 Pass initial tests 2022-11-28 17:05:57 -05:00
dotasek cce0d42c0e GitHub complains about missing newlines. 2022-11-28 15:12:17 -05:00
dotasek 1b823ef97a Failing test 2022-11-28 15:12:17 -05:00
markiantorno 63f905d184 Updating version to: 5.6.82-SNAPSHOT and incrementing test cases dependency. 2022-11-28 18:44:16 +00:00
markiantorno 2715d811dc Release: v5.6.81
## Validator Changes

* Avoid repeated R5 Extension loading in ValidatorService
* Fix problems validating logical models
* Fix `-locale` parameter functionality
* Add Spanish internationalization phrases

## Other code changes

* ProfileUtilities: Provide Standards Status in tree view
* JSONParser: numerous r4b/r5 speed improvements and fixes
* FHIRPathEngine: Catch exceptions resolving references in r5
* Handle null source and target in ConceptMap conversions
* Provide consistent rendering of comments in examples in IGs
* Preparations for changes to IG Publisher narrative generation
* Fix for Identifier.use conversion in dstu3
***NO_CI***
2022-11-28 18:23:09 +00:00
James Agnew 1fc0ed4cbd
Add null guard to converter (#1013)
* Add null guard to converter

* One more guard

* One more null guard

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-11-28 12:24:01 -05:00
Grahame Grieve f3413dad23 Fix error converting Identifier.use = old to R3 2022-11-25 22:35:55 -03:00
Grahame Grieve 80f275ff18 upgrade to new JSON parser 2022-11-24 17:57:46 -03:00
markiantorno 01d212afac Updating version to: 5.6.81-SNAPSHOT and incrementing test cases dependency. 2022-11-22 14:28:51 +00:00
markiantorno 3ab720a6af Release: v5.6.80
## Validator Changes

* Improved Loading speed (20% reduction)
* Fix issue handling path on content references on deeply nested content

## Other code changes

* Fix rendering issue when reference.reference missing
* Add rule date to validation messages so new rules can be highlighted
***NO_CI***
2022-11-22 14:05:59 +00:00
markiantorno cc842bc114 Updating version to: 5.6.80-SNAPSHOT and incrementing test cases dependency. 2022-11-20 19:32:31 +00:00
markiantorno ee7ba71b29 Release: v5.6.79
## Validator Changes

* no changes

## Other code changes

* fix references to LOINC codes in generated narrative
***NO_CI***
2022-11-20 18:59:55 +00:00
markiantorno d7d93b486b Updating version to: 5.6.79-SNAPSHOT and incrementing test cases dependency. 2022-11-17 21:34:46 +00:00
markiantorno 14a8c388fd Release: v5.6.78
## Validator Changes

* Validate HTML entities in XHTML in resources

## Other code changes

* Stop producing XHTML entities in resources when rendering
***NO_CI***
2022-11-17 21:15:59 +00:00
markiantorno bb8775bfdb Updating version to: 5.6.78-SNAPSHOT and incrementing test cases dependency. 2022-11-16 22:55:59 +00:00
markiantorno 41ffa42dc6 Release: v5.6.77
## Validator Changes

* Minor fix to jurisdiction output (+ handle case where JVM has no locale)
* Add support for extensions parameter
* Make all error messages include version of underlying resource if available
* Accept display for code from ValueSet CLD if no code system available
* Various minor improvements to error messages

## Other code changes

* Minor clean up in test cases
* Fix up i18n support to handle pluralization properly
* Refactor resource narrative generation rules (GenerationRules.X)
* Display resource type in generated narrative
* Add support for generating R4 and R4B packages
* Add support for generating XVer packages
***NO_CI***
2022-11-16 22:38:33 +00:00
Grahame Grieve cb72792b7e More work on R4 <-> R4B guides 2022-11-14 18:03:22 +11:00
Grahame Grieve aa6daa3ea0 build core packages in other versions 2022-11-11 12:29:24 +11:00
markiantorno 212096f228 Updating version to: 5.6.77-SNAPSHOT and incrementing test cases dependency. 2022-11-06 12:50:41 +00:00
markiantorno cc634aecd5 Release: v5.6.76
## Validator Changes

* Add support for R4B to validator (parts were missing)
* Fix bugs in Logical Model snapshot generation and validation (both instances and logical models themselves)
* Check min/max value for decimal values

## Other code changes

* Fix broken links rendering questionnaires
* Fix issue with converting ActivityDefinition.kind between R5 and R4/R4B/R3 (+ update R5 code)
* Fixes to terminology cache management for test cases
* Process relative links in markdown in code descriptions when rendering value sets
* Fix issue with contained resource not always rendering consistently
* Fix bug where Element Model paths are not populated after preforming a transform
* Fix NPE rendering invalid bundles
* refactor Paramters.getParameter helper methods
* Rendering improvements for logical models
***NO_CI***
2022-11-06 12:33:46 +00:00
Grahame Grieve 87a5b50662 Fix issue with ActivityDefinition.kind = TASK not converting properly 2022-11-05 11:28:44 +11:00
Grahame Grieve 1ae7093eef #934 Parameters object's getParameter(String theParameterName) is misnamed 2022-11-02 08:51:17 +11:00
markiantorno f0c53bd7a9 Updating version to: 5.6.76-SNAPSHOT and incrementing test cases dependency. 2022-10-28 11:57:13 +00:00
markiantorno a285132f5b Release: v5.6.75
## Validator Changes

* Fix problem determining implicit code system when code system only known to tx.fhir.org

## Other code changes

* Fix bugs generating CDSHooks snapshots
* Fix for NPE rendering Patient Photo
* Fix problem generating snapshots for specializations where inherited types have properties
* Work on i18n framework
***NO_CI***
2022-10-28 11:38:37 +00:00
Grahame Grieve 9352b6e441 Fix problem generating snapshots for specializations where inherited types have properties 2022-10-28 17:48:27 +11:00
markiantorno cf111ac919 Updating version to: 5.6.75-SNAPSHOT and incrementing test cases dependency. 2022-10-25 09:35:23 +00:00
markiantorno 325fd0736d Release: v5.6.74
## Validator Changes

* Improve error message for extensions without values

## Other code changes

* Add support for Requirements Resource (rendering + caching)
* Tidy up support for ActorDefinition
* Generate better summary for references
* Clean up bug checking data types in ContextUtilities
* Remove Validator dependency on GSON
* Upgrade validator to produce PSVI  for tools to make use of
***NO_CI***
2022-10-25 09:13:57 +00:00
Grahame Grieve dd36590599 Add requirements renderer 2022-10-25 15:02:10 +11:00
Grahame Grieve 7c78bdd59c Merge remote-tracking branch 'origin/master' 2022-10-24 21:58:38 +11:00
Grahame Grieve ac67f945a0 Support for requirements resource 2022-10-24 11:40:00 +11:00
markiantorno 308ca865e3 Updating version to: 5.6.74-SNAPSHOT and incrementing test cases dependency. 2022-10-21 07:25:34 +00:00
markiantorno 60022888b1 Release: v5.6.73
## Validator Changes

* Further support for validating CDSHooks content

## Other code changes

* Render period on Identifiers
* Render Tooling IG extensions in Profile table
* Fix NPE building CCDA IG
***NO_CI***
2022-10-21 06:47:50 +00:00
markiantorno d0b4a1c247 Updating version to: 5.6.73-SNAPSHOT and incrementing test cases dependency. 2022-10-20 07:11:05 +00:00
markiantorno 4aeac63325 Release: v5.6.72
## Validator Changes

* Improved Errors for bad resource ids
* R5 ballot: Hack around discovered issues in the ballot
* Enforce value set & code system versioning when validating codes
* Enable bulk -snapshot and -convert on multiple/wildcard -source
* Fix bug revalidating profiled abstract types

## Other code changes

* Rework validator test cases to not have inter-test dependencies (+ fix up to allow contexts to be cloned)
* add First draft of xliff production
* Add ActorDefinition conversions R5 -> R4, R4B, R3
* Add support for validating logical model json files (not surfaced in CLI yet)
* Updates for changes to extension URLs in Tools IG
* Fix map rendering in value sets
* Fix broken link in R4 DeviceUseStatement
***NO_CI***
2022-10-20 06:47:38 +00:00
Grahame Grieve a2af53f180 Merge remote-tracking branch 'origin/master' 2022-10-19 22:37:28 +11:00
Grahame Grieve 142c6503f8 hack around R5 issues in ballot 2022-10-19 20:46:47 +11:00
Grahame Grieve d6f09c3cc2
Merge pull request #889 from NSolooki/patch-1
Add Author to DocumentReference Converters
2022-10-19 07:25:37 +11:00
Grahame Grieve b17735a15b Add support for ActorDefinition 2022-10-17 11:43:33 +11:00