Commit Graph

2295 Commits

Author SHA1 Message Date
dotasek 153c517ea2 Code cleanup, some renaming, adding correct instances of map 2023-11-22 16:05:47 -05:00
dotasek 6916854071 Include Validation time in ValidationResponse 2023-11-20 13:40:03 -05:00
Grahame Grieve f2f10bf27b update test cases 2023-11-17 07:11:24 +11:00
Grahame Grieve a4fa21a868 Add support for IPS validation in test cases 2023-11-17 07:11:13 +11:00
Grahame Grieve e009734d85 fix committee URLs 2023-11-17 07:10:02 +11:00
markiantorno 8fe88a320e Updating version to: 6.2.5-SNAPSHOT and incrementing test cases dependency. 2023-11-15 18:56:03 +00:00
markiantorno 29b1cd98dc Release: v6.2.4
## Validator Changes

* Add support for NZ IPS
* Don't fail on erroneously repeating elements, and more bundle link validation
* Rework bundle references validation
* Fix problem creating CDA type discriminators
* Fix bundle resolution rules to conform to the specification in version R4+

## Other code changes

* Fix issue where markdown with multiple characters was being cut off sometimes
* Fix bundle resolution rules to conform to the specification in version R4+
* More work on versioned API
* Fix up VSAC import for large value sets
* Fix FHIRPath cda tests for empty package cache
* Fix problem with R3 expansion
* Add support for CCDA .hasTemplateIdOf(canonical)
* Fix issue where markdown with multiple characters was being cut off sometimes
***NO_CI***
2023-11-15 18:29:25 +00:00
Grahame Grieve a7e8dc18a1 #1488 - don't fail on erroneously repeating elements, and more bundle link validation 2023-11-15 17:34:13 +11:00
Grahame Grieve 6181d812e6 Rework bundle references validation 2023-11-15 14:20:54 +11:00
Grahame Grieve 9f8eeed5f6 more work on versioned API 2023-11-14 14:46:01 +11:00
Grahame Grieve f2dc77272b fix problem creating CDA type discriminators 2023-11-14 12:00:29 +11:00
Grahame Grieve 618930e5bf Planning ahead: Add fhirVersion to R5 Base and IWorkerContext methods, and move IContextResourceLoader, ValidationResult and CodingValidationRequest out of IWorkerContext to their own clasess 2023-11-14 06:38:40 +11:00
Grahame Grieve e56dfb8693 Add support for NZ IPS 2023-11-13 08:10:56 +11:00
Grahame Grieve 4c6a318749 Fix bundle resolution rules to conform to the specification in version R4+ 2023-11-13 07:38:31 +11:00
markiantorno c128f3b61d Updating version to: 6.2.4-SNAPSHOT and incrementing test cases dependency. 2023-11-11 06:49:45 +00:00
markiantorno 7cb9286e3f Release: v6.2.3
## Validator Changes

* Remove wrong LOINC code for circumference % from vital signs scan
* Remove spurious error when profile discriminators have no value
* Fix as() and ofType() in FHIRPath engine to support type namespaces properly
* Fix problem with FHIRPath engine wrongly checking types in context of CDA
* Fix date validation error in CDA validation
* Update error handling to preserve message ids properly

## Other code changes

* Add rendering of II.system
* Fix extension handling when generating snapshots - which are ignored, overwrite, or add
* Delete some empty java files
* Remove unnecessary snapshot tests
***NO_CI***
2023-11-11 06:24:19 +00:00
Grahame Grieve 89306e6ce3 Remove wrong LOINC code from vital signs scan 2023-11-11 08:26:56 +11:00
Grahame Grieve 7ce6334351 remove spurious error when profile discriminators have no value 2023-11-11 08:26:40 +11:00
Grahame Grieve 110d627e83 fix problem with FHIRPath engine wrongly checking types in context of CDA 2023-11-10 16:39:05 +11:00
Grahame Grieve dc791becaa update error handling to preserve message ids properly 2023-11-09 16:51:15 +11:00
markiantorno c717f898ef Updating version to: 6.2.3-SNAPSHOT and incrementing test cases dependency. 2023-11-07 03:30:21 +00:00
markiantorno 3a7733ea02 Release: v6.2.2
## Validator Changes

* Validate Vital signs Profiles when validating observations
* Hack around problem with vs-1 constraint in R4
* Check for retired status when multiple OID matches exist
* Fix for validating extensions on R5 resources in R4 (R4 special case)
* Minor fixes for standalone ViewDefinition validator

## Other code changes

* Revised Capability Statement rendering (Thanks Vassil Peytchev)
* Fix bug rendering primitive types with an extension that provides a value alternative
* Add links to references when rendering json and xml instances in IG publisher
* Fix bug generating profile spreadsheets
* Support suppress examples when generating snapshots
* VSAC Import improvements
***NO_CI***
2023-11-07 02:46:28 +00:00
Grahame Grieve 0685bc7a81 Fix for validating extensions on R5 resources in R4 (R4 special case) 2023-11-07 09:14:42 +11:00
Grahame Grieve 35c7e18e55 Validate Vital signs Profiles when validating observations 2023-11-05 09:19:39 +11:00
Benjamin Flessner 301e5acfaa Update CDA validation targets 2023-11-01 14:44:11 -05:00
markiantorno a47dccc7f6 Updating version to: 6.2.2-SNAPSHOT and incrementing test cases dependency. 2023-10-31 16:23:32 +00:00
markiantorno 3c198658e1 Release: v6.2.1
## Validator Changes

* Validate contextInvariant in extension definitions
* fix Typo in TI WG name
* Handle unknown constants properly in FHIRPath
* Fix handling of type ancestors at the root of FHIRPath expressions
* CDA templates with no extension value use urn:oid: not urn:hl7ii:
* Allow URL as a type of string in FHIRPath type checking
* Fix semver validation
* Fix problem resolving context in CDA invariants

## Other code changes

* Finish SQL in FHIR Implementation, but disable sql on fhir tests until package is packaged properly by next release of IG publisher
* Fixes to Search Parameter rendering per FHIR-I decision
* Fix broken links in extension references done by [[[]]]
* Fix broken links in code system rendering of parents
* Support using names in [[[markdown]]] when rendering
* Remove "profile" from tx operations
* Include checkIPSCodes and bundleValidationRules in json
***NO_CI***
2023-10-31 15:51:40 +00:00
dotasek 7386b2b8f8
Include checkIPSCodes and bundleValidationRules in json (#1473)
+ gentle renaming
2023-10-31 09:49:37 -04:00
Grahame Grieve 89fc407479 fix 2023-10-31 17:00:59 +11:00
Grahame Grieve 034b1057e6 CDA templates with no extension value use urn:oid: not urn:hl7ii: 2023-10-28 06:38:16 +11:00
Grahame Grieve a327f0312e code clean up 2023-10-28 06:35:20 +11:00
markiantorno b60d9e4f81 Updating version to: 6.2.1-SNAPSHOT and incrementing test cases dependency. 2023-10-24 23:01:44 +00:00
markiantorno 7c3863c6ad Release: v6.2.0
## Validator Changes

* Validation by templateId for CDA
* Fix NPE validating concept maps
* Update ViewDefinition validator for change (alias -> name)
* Fix for NPE validating sql-on-fhir ViewDefinition
* Fix for index out of bounds error when extension uses itself
* Fix issue where .resolve() in FHIRPath didn't work with URL values (and fix typo in i18n system)
* Implement FHIRPath slice() function in validator
* Fix bug where Snapshot generation can run off the end of the differential

## Other code changes

* Breaking API Change: Revise FHIRPath API so hosts can evaluate expressions in custom functions
* Add package use tracking to FHIR cache for validator.fhir.org
* Support for instance-name and instance-description in IG publisher
* Element.removeExtension (support for instance-name and instance-description extensions in IG publisher)
* Split terminology service tests
* Hack for wrong URLs in subscriptions backport
* Remove dependencies for unused UI experiment
* More improvements to profile code generation
***NO_CI***
2023-10-24 22:34:10 +00:00
Grahame Grieve e2ac0c56c7 bump minor version correctly 2023-10-25 08:20:34 +11:00
Grahame Grieve e431770caf
2023 10 gg code gen (#1469)
* Revise FHIRPath API so hosts can evaluate expressions in custom functions

* Implement slice() function in validator

* more improvements to profile generation

* Fix issue where .resolve() in FHIRPath didn't work with URL values (and fix typo in i18n system)

* release notes

* Fix test ignore/exclude issues, bump test cases

---------

Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-10-24 15:26:24 -04:00
Grahame Grieve e06fee93c2 release notes 2023-10-21 06:44:08 +11:00
Grahame Grieve 2f8a5a071e validation by templateId for CDA 2023-10-20 21:30:25 +11:00
Grahame Grieve 2e71297478 fix NPE validating concept maps 2023-10-20 16:31:09 +11:00
Grahame Grieve 6066de7784 split terminology service tests 2023-10-20 16:30:47 +11:00
markiantorno 87b756e0c7 Updating version to: 6.1.17-SNAPSHOT and incrementing test cases dependency. 2023-10-16 22:48:30 +00:00
markiantorno b9338024a6 Release: v6.1.16
## Validator Changes

* Fix bug processing value sets containing URLs

## Other code changes

* Add initial support for http://hl7.org/fhir/tools/StructureDefinition/type-profile-style
* More work on sql-on-fhir implementation
* Allow for type parameter to custom functions in FHIRPath
* Fix bugs in processing current packages for XIG
***NO_CI***
2023-10-16 22:19:52 +00:00
Grahame Grieve 1e98e69338 more work on sql-on-fhir implementation 2023-10-16 23:12:15 +11:00
markiantorno a31120f15f Updating version to: 6.1.16-SNAPSHOT and incrementing test cases dependency. 2023-10-13 16:03:08 +00:00
markiantorno 17b7528c0f Release: v6.1.15
## Validator Changes

* Support for CDA code validation

## Other code changes

* Update XML Parser & logical model renderer for XML choice groups
* Restore JSON Parser method for HAPI compatibility.
* Maintain OID to URL lookup index
* Fix json parsing of CDA
***NO_CI***
2023-10-13 15:36:00 +00:00
Grahame Grieve 9d742dcd24 rework OID handling 2023-10-13 10:27:53 +11:00
Grahame Grieve 3d039a89eb get tests passing 2023-10-12 21:50:39 +11:00
Grahame Grieve 84e3bec25f more XML checking for CDA + control over date rules 2023-10-12 20:15:16 +11:00
Grahame Grieve 1207e32e20 Support for CDA code validation 2023-10-12 12:54:25 +11:00
markiantorno 65161437cb Updating version to: 6.1.15-SNAPSHOT and incrementing test cases dependency. 2023-10-10 10:28:06 +00:00
markiantorno faf0e0684c Release: v6.1.14
## Validator Changes

* Make sure logical models get a snapshot generated

## Other code changes

* Fix URL of concept map extension in version conversion
***NO_CI***
2023-10-10 10:01:13 +00:00
Grahame Grieve 2cc40452d7 make sure logical models get a snapshot generated 2023-10-10 15:43:09 +11:00
markiantorno 5f96bcd35d Updating version to: 6.1.14-SNAPSHOT and incrementing test cases dependency. 2023-10-09 19:09:40 +00:00
markiantorno 2d5efc33d1 Release: v6.1.13
## Validator Changes

* Improve language on constraint error message + add expression checking for SQL on FHIR project

## Other code changes

* Fix uuid() executing StructureMaps and don't throw errors processing StructureMaps
* Add support for test folder in NPM packages
* Fix rendering of XML Attributes in profiles
* Add support for hosts to manage certificate resolution using ISignatureServices + fix issue matching type names when validating logical models
* Make sure snapshots are generated when fetching types
* Workaround issue where R5 build wrongly adds ele-1 to base
* Fix conversion issue associated with ConceptMap.element.target.equivalence in versions previous to R5 (use proper extension URL, and move extension so it can be a modifier. And fix for modifierExtension handling)
* Fix birthDate editing in CmdLineApp
***NO_CI***
2023-10-09 18:43:48 +00:00
Grahame Grieve 9da31ae8ad improve language on constraint error message + add expression checking for SQL on FHIR project 2023-10-09 17:46:33 +11:00
Grahame Grieve af0f9bc765 Add support for hosts to manage certificate resolution using ISignatureServices + fix issue matching type names when validating logical models 2023-10-09 17:45:38 +11:00
markiantorno 9ec1c68cfc Updating version to: 6.1.13-SNAPSHOT and incrementing test cases dependency. 2023-10-05 02:20:25 +00:00
markiantorno d705905c8c Release: v6.1.12
## Validator Changes

* fix CDA parsing error for sdtc:raceCode
* fix xml output to deal with namespaces properly
* fix FHIRPath join implementation to make separator parameter optional

## Other code changes

* Improve rendering for xml_no_order extension
* add command line demo app
* rework xig into 3 steps
* add userData to JSON element
* Initial SQL On FHIR implementation
* Add getDistalNames() to FHIRPath for SQL-on-FHIR support
***NO_CI***
2023-10-05 01:50:02 +00:00
Grahame Grieve 752ab7a3d1
2023 10 gg cda parsing fix 2 (#1451)
* fix xml output to deal with namespaces properly

* Improve rendering or xml_no_order

* add command line demo app

* fix CDA parsing error for sdtc:raceCode

* Fix error message

* Bump test case version

---------

Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
Co-authored-by: dotasek <dotasek.dev@gmail.com>
2023-10-04 18:42:29 -04:00
Grahame Grieve 7698ee4b7f
Merge pull request #1443 from hapifhir/do-20230921-shc-validation-service
SHC Validation
2023-10-04 06:01:07 +03:00
markiantorno 627e40934b Updating version to: 6.1.12-SNAPSHOT and incrementing test cases dependency. 2023-10-02 13:18:11 +00:00
markiantorno 9b5c26be25 Release: v6.1.11
## Validator Changes

* Fix FHIRPath type resolution for logical models
* Update parsers to record the element format for logical model validation
* fix profile matching for CDA logical models

## Other code changes

* Upgrade PackageVisitor for XIG
***NO_CI***
2023-09-30 18:21:42 +00:00
Grahame Grieve c2aa221c98 fix profile matching for CDA logical models 2023-09-30 22:30:20 +10:00
Grahame Grieve d675d9d4a0 upgrade PackageVisitor for XIG 2023-09-30 22:28:44 +10:00
dotasek 2a6538cd02 Merge remote-tracking branch 'origin/master' into do-20230921-shc-validation-service 2023-09-29 11:00:19 -04:00
markiantorno f9b3dbde57 Updating version to: 6.1.11-SNAPSHOT and incrementing test cases dependency. 2023-09-29 11:11:34 +00:00
markiantorno ddd3889268 Release: v6.1.10
## Validator Changes

* Change Mapping type validation error to warning validating maps
* Add support for special case codes in v2 (NNnnn)
* Fix problem parsing logical model cda fragments
* Fix parsing logical model list attributes
* Fix issue parsing parameters in a target expression

## Other code changes

* Handle additional bindings when generating snapshots for R5 profiles
* Fix problem rendering additional bindings in R5
* Fix for new pubpack version
***NO_CI***
2023-09-29 10:45:20 +00:00
Grahame Grieve 0d4e1af1a6
Merge pull request #1447 from hapifhir/2023-09-gg-cda-fixes
2023 09 gg cda fixes
2023-09-29 19:23:05 +10:00
Grahame Grieve 6fa4bb1061 change error to warning validating maps 2023-09-29 13:38:05 +10:00
dotasek 7548ea37ae Merge remote-tracking branch 'origin/master' into do-20230921-shc-validation-service 2023-09-28 15:19:02 -04:00
markiantorno 90d683907d Updating version to: 6.1.10-SNAPSHOT and incrementing test cases dependency. 2023-09-27 16:01:56 +00:00
markiantorno b276d8a793 Release: v6.1.9
## Validator Changes

* Fix for issue parsing SHC and not recording line/col correctly
* Fix issue validating CDA FHIR Path constraints
* Better error handling validating codes in concept maps
* Validate special resource rules on contained resources and Bundle entries
* Improved error messages of observation bp
* Fix up WG internal model for changes to workgroups
* fix misleading error message inferring system when filters in play
* Fix type handling for logical models (CDA fixes)
* Fix up parsing of logical models
* Fix bug parsing extension with no value in JSON for the validator

## Other code changes

* Major uplift of PEModel to support generated code for profiles in R4 + R5
* Add removeChild in R4/R4B/R5 model
* Fix version conversion issue between r4 and r5 charge definition issue
* Fix rendering extension and missed profile on Reference()
***NO_CI***
2023-09-27 15:35:08 +00:00
dotasek c0f61dac17 Merge branch 'master' into do-20230921-shc-validation-service 2023-09-27 10:16:06 -04:00
Grahame Grieve 79b45832e4 Fix timezone issue in PE tests 2023-09-27 09:06:04 +10:00
dotasek d850944057 WIP track derived content for ValidatedFragment 2023-09-26 16:46:22 -04:00
Grahame Grieve 527b2cb35b Fix issue validating CDA FHIR Path constraints 2023-09-27 05:51:46 +10:00
Grahame Grieve 72a6b50cf2 better error handling validating concept maps 2023-09-25 13:50:16 +10:00
Grahame Grieve 194e2113ce Valid special cases on contained resources and Bundle entries 2023-09-25 13:50:02 +10:00
markiantorno 7d4816f628 Updating version to: 6.1.9-SNAPSHOT and incrementing test cases dependency. 2023-09-21 19:51:51 +00:00
markiantorno 8413995d8b Release: v6.1.8
## Validator Changes

* no changes

## Other code changes

* Fix typo in CodeSystem renderer fixed string
***NO_CI***
2023-09-21 19:24:42 +00:00
dotasek ba8a4797e5 If fileType is null, use ResourceChecker 2023-09-21 13:15:42 -04:00
dotasek ef6f92a21e WIP return validation fragments 2023-09-21 09:50:08 -04:00
markiantorno 14e6f210e6 Updating version to: 6.1.8-SNAPSHOT and incrementing test cases dependency. 2023-09-21 06:36:25 +00:00
markiantorno 23a0bc3f14 Release: v6.1.7
## Validator Changes

* Significant Performance improvements parsing JSON resources
* Refactor Type handling for faster performance
* Validate the stated publisher/WG/contacts for HL7 published resources
* Better error message when diff contains bad paths
* pass dependent resources to server and make sure cache-id is filled out properly in all contexts
* Fix error in FML parser parsing parameters
* Fix issue with dom-6 and contained elements (Internal ChildMap synchro issues)
* Better handling of errors from tx.fhir.org
* Fix bug checking for implicit value sets
* Fix bug checking of mixing snomed display types
* Reduce size of validatable concept map to 500 - for now + better handling of errors on server batches
* Improve UCUM validation BP rule

## Other code changes

* Fix up handling of includes in liquid templates
* Fix up rendering of profile names for abstract profile instantiations
* Improved rendering of codes in include when rendering valuesets
* Start generating .index.db as well as .index.json in packages for faster package reading
* Fix problem caching look up of implied value sets
* Add okio dependency for running vsac
***NO_CI***
2023-09-21 06:06:01 +00:00
Grahame Grieve 31ea68f69b Fix bug checking for implicit value sets 2023-09-21 12:42:36 +10:00
Grahame Grieve 9ef82e7e23 Fix bug checking of mixing snomed display types 2023-09-21 12:42:18 +10:00
Grahame Grieve 66b69deb37 reduce size of validatable concept map - for now 2023-09-21 12:41:55 +10:00
Grahame Grieve 6f17713ae8 Improve UCUM validation BP rule 2023-09-21 12:41:23 +10:00
Grahame Grieve a6f43420d5 publication WG checking not for example resources 2023-09-20 16:58:17 +10:00
Grahame Grieve eecc6633d3 Improved rendering of codes in include when rendering valuesets 2023-09-20 11:12:50 +10:00
Grahame Grieve 91abf50cdc Fix issue with dom-6 and contained elements 2023-09-20 11:11:05 +10:00
Grahame Grieve 46c12d1a22 Performance improvements for type handling, and rename NamedElement to ValidatedFragment 2023-09-19 09:58:36 +10:00
Grahame Grieve 4d2868f21e Add support for validating WG info in HL7 resources 2023-09-15 22:01:30 -07:00
markiantorno a68ba66d1a Updating version to: 6.1.7-SNAPSHOT and incrementing test cases dependency. 2023-09-15 22:58:19 +00:00
markiantorno 43e73b1281 Release: v6.1.6
## Validator Changes

* Add R4B binding-definition URL to validator exception list
* Correct validation when CodeSystem.content = example and server doesn't know code system
* Fix bug processing CDA snapshots
* Fix issue evaluating FHIRPath correctness on CDA.Observation
* Improve error message from validator when invariants fail
* Fix NPE validating concept maps
* Add parameter for easy CDA validation
* Suppress wrong invariants on compiler magic types
* fix NPE checking codes

## Other code changes

* Improve CodeSystem rendering - make parent property a link
* Add file tracking when npm package performing file unpacking
* Remove env variables from path builder
* Fix bug in version comparison
* fix for NPE in HAPI
* Performance improvements for IG Publisher
* Start working on cross-version extensions
* Improve rendering of message about logical target
***NO_CI***
2023-09-15 22:32:55 +00:00
Grahame Grieve 65ea3ddf95 Merge remote-tracking branch 'origin/master' 2023-09-15 13:13:40 -07:00
Grahame Grieve 1b65cb5ca2 Suppress wrong invariants on compiler magic types 2023-09-15 12:47:15 -07:00
Grahame Grieve 96ce441f9a more IG publisher efficiency work 2023-09-15 10:15:04 -07:00
Grahame Grieve c6b7a4f47d start working on cross-version extensions 2023-09-15 10:14:43 -07:00
Grahame Grieve f90308d7d3 easy CDA validation 2023-09-15 10:14:23 -07:00
Grahame Grieve a620e2aa30 fix NPE validating concept maps 2023-09-15 10:14:06 -07:00
Grahame Grieve a59a9619d9 Improve error message from validator when invariants fail 2023-09-15 10:13:02 -07:00
Grahame Grieve a6b6a9d330 Add R4B binding-definition URL to validator exception list 2023-09-12 15:48:22 -07:00
markiantorno a8967b378f Updating version to: 6.1.6-SNAPSHOT and incrementing test cases dependency. 2023-09-11 01:26:15 +00:00
markiantorno a09216c6e8 Release: v6.1.5
## Validator Changes

* no changes

## Other code changes

* Add baseUrl and version methods to r5 CanonicalType
***NO_CI***
2023-09-11 01:00:01 +00:00
markiantorno 30ed1bf615 Updating version to: 6.1.5-SNAPSHOT and incrementing test cases dependency. 2023-09-10 01:22:26 +00:00
markiantorno 1c24341056 Release: v6.1.4
## Validator Changes

* Fix bug preventing Best Practice invariants being reported on, and add -best-practice parameter
* Fix issue not validating bundles when there are multiple profiles on entry.resource
* Add Japanese translations

## Other code changes

* Fixes for minor bugs discovered testing the XIG
* fix package program data path
***NO_CI***
2023-09-10 00:51:54 +00:00
Grahame Grieve 6b38a730e9 SHC signature verification 2023-09-08 07:35:11 +10:00
Grahame Grieve 304fa3f493 Adjust tests for best-practice flag 2023-09-08 04:21:14 +10:00
Grahame Grieve c610e7a8b5 Make Best Practice Recommendations work properly 2023-09-07 22:01:13 +10:00
Grahame Grieve a061db8f01 Fix issue not validating bundles when there are multiple profiles on entry.resource 2023-09-07 17:07:09 +10:00
markiantorno 980f04557c Updating version to: 6.1.4-SNAPSHOT and incrementing test cases dependency. 2023-09-06 08:22:50 +00:00
markiantorno 6d37127e63 Release: v6.1.3
## Validator Changes

* Test concept map code validity
* Rework type checking on target profiles to support imposesProfile
* Fix imposesProfile extension being missed on primary profile
* Add support for IPS-AU
* Fix warning/error message about experimental property on CodeSystems and ValueSets
* Fix unknown code message to include code system version
* Add provisional SHLinks validation

## Other code changes

* Render Requirements.reference
* Convert Requirements.reference between versions
* Fix test that breaks on local machines + Fix system path for FileSystemPackageCacheManager
* Update to cqframework 2.11 and remove unused common-beanutils declaration (#1419)
* Better xhtml logging for debugging
* Fix DF markdown engine to escape < properly
* Support for sub-packages in packagelist.json
* NPE proofing property handling for Code Systems
* rework the way intermediary content is handled in the validator
* Restore CodeQL regex queries (#1422) + Whitelist BSD 3-clause license
***NO_CI***
2023-09-06 06:12:07 +00:00
Grahame Grieve f1f45f91e1 fix npe 2023-09-06 11:14:56 +10:00
Grahame Grieve 87f7984f8b test concept map code validity 2023-09-06 09:12:25 +10:00
Thomas Papke f05b2f5966
Update to cqframework 2.11 and remove unused common-beanutils declaration (#1419) 2023-09-05 09:08:22 -04:00
Grahame Grieve d7d56f5cec Support for IPS-AU 2023-09-04 13:40:29 +10:00
Grahame Grieve 5cc4e3ef03 rework the way intermediary content is handled in the validator + fix impose-profile handling for IPS-AU 2023-09-04 13:38:22 +10:00
Grahame Grieve bfac7f06de Add SHLinks validation 2023-09-02 23:21:32 +07:00
markiantorno bca705a3c6 Updating version to: 6.1.3-SNAPSHOT and incrementing test cases dependency. 2023-08-31 13:58:37 +00:00
markiantorno f5e218c279 Release: v6.1.2
## Validator Changes

* FHIRPath fixes checking types discovered testing R6 build

## Other code changes

* Fix rendering of impose-profile extension
* Improvements to performance tracking code
* get FHIRFormat from SHC code
***NO_CI***
2023-08-31 13:29:31 +00:00
Grahame Grieve 54f36aec4c more FHIRPath fixes 2023-08-31 08:15:33 +02:00
Grahame Grieve 4bba1c2cde fix bugs in FHIRPath checking and track special time when validating resources 2023-08-31 06:30:29 +02:00
Grahame Grieve 2deb88cdc9 Merge remote-tracking branch 'origin/master' 2023-08-30 09:38:45 +02:00
Grahame Grieve ac33590b96 #1412 - fix out of memory issues 2023-08-29 17:34:03 +02:00
markiantorno 9048983155 Updating version to: 6.1.2-SNAPSHOT and incrementing test cases dependency. 2023-08-29 08:56:09 +00:00
markiantorno 2f6c61af78 Release: v6.1.1
## Validator Changes

* Fix problem validating code systems with content = not-present
* Further development of multi-language support on the tx server, and:
* Change the validator so that the default language is '*' (all languages) not 'en'

## Other code changes

* Improve license scanning and readme documentation
* Change xpp3 dependency
* Add client version to tx user-agent requests
* Suppress spurious xml parsing messages to System.err
***NO_CI***
2023-08-29 08:27:41 +00:00
Grahame Grieve d0815682b8
Merge branch 'master' into language-rework 2023-08-28 20:13:42 +02:00
Grahame Grieve a22338cd54 fix up failing tests 2023-08-28 15:58:37 +02:00
Grahame Grieve 0d98d80eac more cache changes 2023-08-28 14:53:25 +02:00
Grahame Grieve 684f6bd740 fix test cases 2023-08-28 12:56:47 +02:00
Grahame Grieve 333ffc340e Accept-Language 2023-08-25 16:21:56 +02:00
Grahame Grieve 7eaa723ec9 rewrite the way language works in value sets 2023-08-25 13:09:36 +02:00
dotasek 985b66c276 Add version to agent header
+ remove unused getValidationEngine methods in Common
2023-08-24 15:31:09 -04:00
Grahame Grieve 63e090a2d9
Merge pull request #1405 from hapifhir/do-20230823-swap-out-xpp3
Swap out xpp3 dependency
2023-08-24 09:18:56 +02:00
Grahame Grieve debbff6319
Merge pull request #1407 from hapifhir/2023-08-gg-fix-1404
#1404 Fix problem validating code systems with content = not-present
2023-08-24 09:17:37 +02:00
Grahame Grieve 0b18b3a3b3 #1404 Fix problem validating code systems with content = not-present 2023-08-24 06:38:15 +02:00
dotasek 490e57fa7c Swap out xpp3 dependency 2023-08-23 15:51:44 -04:00
markiantorno fb64a720c8 Updating version to: 6.1.1-SNAPSHOT and incrementing test cases dependency. 2023-08-22 17:26:57 +00:00
markiantorno e90863a271 Release: v6.1.0
## Validator Changes

* Performance fix: Delay loading content when loading IGs
* CodeSystem validation around count and content
* Add checking around internal status consistency and across dependencies (draft/experimental/retired/deprecated)
* Improved error messages on server failure
* Fix bug in warning about No valid Display Names found
* Use Supplements when validating display names
* Fix issue in FHIRPath .combine focus handling
* Check Extension fixed values for URLs - enforce consistency
* Fix R4 FML parser problem
* Track and report inactive status when reported from terminology server
* Add defense against large terminology operations causing obscure java errors
* Fix bug with client sending too much data to tx.fhir.org (big performance hit in some cases)
* Fix obscure bug with designations in a more specific language the the code system they are in

## Other code changes

* Significant upgrade of version comparison for profiles/extensions, value sets, and code systems, and integration into rendering framework
* Many minor changes to terminology functionality (reconciliation with differences with OntoServer) including service protection
  * Rename implySystem parameter to inferSystem per TI decision
  * rework how definitions are handled after discussion with Michael
  * add flat mode to tests for Ontoserver, and add experimental functionality
* fix rendering issue in subscription topic
* Add a renderer for ExampleScenario
* Automatically render markdown in code system concept definitions
* Fix loading issues in test mode for simplifier packages
* Remove spurious logging in FHIRPath engine
* Fix addChild error in PEBuilder (#1343) + Add test case
* CPT Importer
* Dependencies fixed/updated: okhttp, thymeleaf, commonmark & UCUM
* Xhtml fluent improvements + related XHtmlNode improvements
* Release new pubpack for new icons
* Json Object comparison: fix bug in arrays with multiple optional elements + improved error messages + support for external strings
* fix cross-version extensions web references where possible
* Don't suppress exceptions in terminology clients
* Add first cut of Profile Generation code
* Stop putting invalid codes in expansions if they are not in the code system
***NO_CI***
2023-08-22 17:01:34 +00:00
dotasek 1b33d2a537 Bump minor version 2023-08-22 11:56:22 -04:00
Grahame Grieve f5f35d5815 in order to get the tests passing 2023-08-22 14:46:04 +10:00
dotasek 9ae060b5d9 Bump ucum version 2023-08-21 09:32:52 -04:00
Grahame Grieve f795394fd2 Sorting ValueSet.expansion.contains in the tx tests 2023-08-21 19:35:10 +10:00
Grahame Grieve 390e25ddae more test fixes 2023-08-19 22:46:23 +10:00
Grahame Grieve e4f6ec5a7b more revisions to tests 2023-08-19 20:18:15 +10:00
Grahame Grieve 497a81a544 Track and report inactive status when reported from terminology server 2023-08-19 20:17:42 +10:00
Grahame Grieve 6f0d54a8dc terminology service bug fixes 2023-08-19 09:03:59 +10:00
Grahame Grieve 0d1072616e rework comparison and related rendering 2023-08-17 18:14:12 +10:00
Grahame Grieve eacffd11df Add support for external strings for tx tests 2023-08-17 11:14:34 +10:00
Grahame Grieve 4d7ecec87c more status checking 2023-08-16 22:39:28 +10:00
Grahame Grieve 3beb0c78e2 Merge remote-tracking branch 'origin/master' 2023-08-16 19:27:48 +10:00
Grahame Grieve e6ef3572ea revise operation issue sorter for tx testing 2023-08-16 19:27:41 +10:00
Grahame Grieve 1711abc322
Merge branch 'master' into do-20230815-bump-okhttp-dependencies 2023-08-16 09:10:47 +10:00
dotasek 976915f3bc Merge branch 'master' into do-20230815-bump-okhttp-dependencies 2023-08-15 17:41:02 -04:00
dotasek ea5270824d Merge branch 'master' into do-20230815-bump-thymeleaf 2023-08-15 17:40:46 -04:00
dotasek dacc73a114 Bump okhttp dependency, exclude vulnerable transitives 2023-08-15 12:52:01 -04:00
dotasek b438e8cd64 Move thymeleaf version to dependencyManagement 2023-08-15 11:27:50 -04:00
dotasek 7c03910a63 Bump thymeleaf 2023-08-15 10:50:29 -04:00
dotasek 2fa0587c1f Fix commonmark class not found 2023-08-15 10:34:58 -04:00
dotasek 81eba4b825 Clean imports 2023-08-15 10:34:31 -04:00
Grahame Grieve ea4e592910 CodeSystem validation around count and content 2023-08-15 19:34:24 +10:00
Grahame Grieve 2b15c545fc comparison tests to include rendering as well 2023-08-15 19:33:56 +10:00
Grahame Grieve ebc755bc2a Check consistency between standards status and resource status 2023-08-14 21:11:49 +10:00
Grahame Grieve 839deaf575 fix up return code in tx tests 2023-08-14 15:39:43 +10:00
Grahame Grieve 14162902de fix tests + fix FML parser problem 2023-08-12 23:06:16 +10:00
Grahame Grieve 369d01646e fix sorting 2023-08-11 16:29:44 +10:00
Grahame Grieve b85b588825 restructure validators to properly validate deprecated dependencies 2023-08-11 12:24:08 +10:00
Grahame Grieve 5aefd6a268 add flat mode to tests, and add experimental functionality 2023-08-11 12:11:22 +10:00
Grahame Grieve 4b006f82ab delay loading content when loading IGs 2023-08-08 21:36:46 +10:00
Grahame Grieve 1dd1c4ad90 better error when extension URL not fixed 2023-08-05 20:58:49 +10:00
markiantorno 9c3a6a7f37 Updating version to: 6.0.26-SNAPSHOT and incrementing test cases dependency. 2023-08-04 17:55:11 +00:00
markiantorno bc3f348108 Release: v6.0.25
## Validator Changes

* Fix problem with evaluating extension contexts
* Fix up support for inactive codes and fix error message syntax
* Fix issue with collection status of resolve() being wrong
* Improved paths in profile error messages
* Fix problem with extension slicing being missed sometimes.
* Fix problem with code validation caching ignoring whitespace
* Produce useful error message when whitespace is wrong in display name
* Support for x-version extensions when generating snapshots

## Other code changes

* Render inactive property in expansions
* Resolve URL for x-version extensions
* Don't warn for loading a wrong version package more than once
* Do not supercede R4 terminology when loading R5 IGs
* Migrate type support when generating differentials
***NO_CI***
2023-08-04 17:27:42 +00:00
Grahame Grieve 26b41ee080 fix server address 2023-08-04 20:48:05 +10:00
Grahame Grieve ad08255740 Merge remote-tracking branch 'origin/master' 2023-08-04 11:49:19 +10:00
Grahame Grieve 45b5631e62 Fix issue with collection status of resolve() being wrong 2023-08-04 11:47:44 +10:00
Grahame Grieve 6d0883468b
2023 08 gg extension paths (#1380)
* fix problem with whitespace in terminology caching

* Support for x-version extensions when generating snapshots

* Fix problem with evaluating extension contexts

* Produce useful error message when whitespace is wrong in display name

* Resolve URL for x-version extensions

* render inactive property in expansions

* fix tests

* ping build

* Point to correct test-cases version

---------

Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-08-03 16:12:48 -04:00
Grahame Grieve b668f4a04a fix tests 2023-08-03 21:33:57 +10:00
Grahame Grieve df4432b49d Fix problem with evaluating extension contexts 2023-08-03 20:28:04 +10:00
markiantorno 011167a218 Updating version to: 6.0.25-SNAPSHOT and incrementing test cases dependency. 2023-08-02 23:28:12 +00:00
markiantorno 42274a7bd3 Release: v6.0.24
## Validator Changes

* Create warnings for status on terminology resources
* Don't load resources from core examples package

## Other code changes

* fix up copy directory for case differences
***NO_CI***
2023-08-02 23:02:37 +00:00
Grahame Grieve db0413c735 Don't load resources from core examples package 2023-08-02 22:11:43 +10:00
Grahame Grieve 32f2f6acc7 warnings for status on terminology resources 2023-08-02 18:12:02 +10:00
Grahame Grieve 96b5b6c520
Merge pull request #1370 from hapifhir/2023-07-gg-extension-context-fixes
2023 07 gg extension context fixes
2023-08-02 06:05:10 +10:00
dotasek fd1eea71e6
Fix error creating new manifest file (#1372) 2023-08-01 14:03:24 -04:00
Grahame Grieve 0eb96f1f0a fixes for extensions IG testing 2023-07-31 20:46:30 +10:00
Grahame Grieve d314a927af FIx up problem resolving URLs 2023-07-31 14:38:09 +10:00
Grahame Grieve b42c908328 More improved FHIRPath checking when validating 2023-07-31 14:37:41 +10:00
Grahame Grieve c58703c63f Improved invariant checking 2023-07-29 08:49:27 +10:00
markiantorno 0165495626 Updating version to: 6.0.24-SNAPSHOT and incrementing test cases dependency. 2023-07-27 14:23:16 +00:00
markiantorno db5d2b07c3 Release: v6.0.23
## Validator Changes

* Update IPS versions for -ips parameter (and get it working again)
* fix up validation of constraints in differentials (wasn't always happening)
* add warnings when collection status isn't right
* Better information messages when CodeSystem.content = not-present
* Add character check in validator for illegal XML Unicode characters
* Fix path problem in NpmPackage (some simplifier packages couldn't be processed)
* Fix NPE validating codes in value sets with improper expansions

## Other code changes

* Add support for Liquid assign
* Switch to DateTime type for Android Support
* Code clean up: remove unused imports
* Fix JSON unicode encoding handling of chars <32 code points
***NO_CI***
2023-07-27 13:56:32 +00:00
Grahame Grieve 06c865badf Fix NPE validating codes in value sets with improper expansions 2023-07-27 17:50:42 +10:00
Grahame Grieve 6afb151dff Better information when CodeSystem.content = not-present 2023-07-27 17:49:03 +10:00
Grahame Grieve a3c32d86a0 add support for Liquid assign + Fix JSON unicode encoding and add character check in validator for illegal XML Unicode characters 2023-07-26 12:32:51 +10:00
Grahame Grieve 3eef08dab8 remove unused imports 2023-07-26 08:31:21 +10:00
Grahame Grieve fefd1ad1d6 fix -ips parameter and add -check-ips-codes parameter 2023-07-26 00:59:02 +10:00
Grahame Grieve 31a76447bd Merge remote-tracking branch 'origin/master' 2023-07-25 05:55:04 +10:00
Grahame Grieve 659da6367d update IPS versions 2023-07-25 05:54:27 +10:00
markiantorno 592fba54cc Updating version to: 6.0.23-SNAPSHOT and incrementing test cases dependency. 2023-07-22 17:06:10 +00:00
markiantorno b7fd3be910 Release: v6.0.22
## Validator Changes

* Add support for private NPM registries requiring authentication
* Don't check FHIRPaths on differentials - not enough type info to test reliably
* Fix bugs in FHIRPath handling of logical models
* Fix minor bugs in type handling for Logical Models and R3 Profile validation
* Remove spurious warning message validating CDA documents
* Add value set qa checking
* Fixes to validator for new CDA package (proper handling of logical model types)
* Fix up bi-di warning message
* Add provisional support for alternate codes
* Workaround ClinicalImpression definition problem in core spec
* Fix to get context variables right when running invariants + fix for parent not always being populated + check type in derived profiles
* Fix checking FHIRPath statements on inner elements of type slices
* Fix scan of naming systems (error validating namespaces)
* Fix issue checking invariant expressions in R5

## Other code changes

* FHIRPath in HAPI mode: Strip returned IIdType of qualifier, version, and resourceType
* Update R4 and R4B FHIRPath implementations for changes picked up in R5 usage
* Fix obligation rendering message
* Fix missing extensions when converting value set properties
* Fix type of x-unknown-code-system in $validate-code response
* Fix CDA validation test case
* Much work on TxServer test case framework + Update terminology server implementation and tests for changes to test cases
* OMOP Vocabulary and ICFImporter development
* Add OWASP dependency check (#1347), upgrade many packages, remove ShEx
* Add github action to upload results
* Remove unused javalin dependency, also generate html reports
* Added test case for ExampleScenario conversion (R4/R5) and significantly bulked up the conversion process
* Remove unneeded resources (#1346) (help16.png)
* Add test for setVsAsUrl parameter setting (#1345)
***NO_CI***
2023-07-22 16:41:19 +00:00
Grahame Grieve 363045c1c8 Fix bugs in FHIRPath handling of logical models 2023-07-22 08:18:55 +10:00