Commit Graph

1672 Commits

Author SHA1 Message Date
Grahame Grieve a62c8683f2
Merge pull request #1139 from hapifhir/gg-202302-map-validation-2
Work on StructureMap validation
2023-02-27 09:14:13 +11:00
Grahame Grieve 2bd73c650e Work on StructureMap validation 2023-02-27 07:30:04 +11:00
Grahame Grieve edf5ecf275
Merge pull request #1138 from hapifhir/gg-202302-map-validation
FML validation
2023-02-25 16:41:26 +11:00
Grahame Grieve d3a407e369 FML validation 2023-02-25 14:05:03 +11:00
dotasek 76c01a98aa
Add basic checkstyle plugin config (#1122)
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-02-24 15:05:49 -05:00
markiantorno e9607783da Updating version to: 5.6.100-SNAPSHOT and incrementing test cases dependency. 2023-02-23 18:15:08 +00:00
markiantorno e2185d7d5c Release: v5.6.99
## Validator Changes

* Fix validation for query references with empty parameter values
* Fix validation for conditional references

## Other code changes

* Fix resource rendering for conditional references
* Fix bug caused by changing DiagnosticReport.conclusion to markdown
* Track target types on references in FHIRPath
* Minor type checking fixes for FHIRPath
* Fix bugs in FHIRPath type checking discovered during R5 preparation
* Add standardsStatus support to core model
* Update okhttp library
* Allow HTTPS for terminology server URL
* Update table generator to suppress external links in base row and column
***NO_CI***
2023-02-23 17:50:57 +00:00
dotasek 5d6636ba8c
Bump okhttp version (#1131)
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-02-23 11:14:50 -05:00
Grahame Grieve bae27ef706 fix validation for query references with empty parameter values 2023-02-21 16:46:27 +11:00
Grahame Grieve 76a3129b30 fix validation of conditional references 2023-02-20 23:48:16 +11:00
markiantorno 9c768415f2 Updating version to: 5.6.99-SNAPSHOT and incrementing test cases dependency. 2023-02-15 10:37:45 +00:00
markiantorno 7ec74d0321 Release: v5.6.98
## Validator Changes

* Fix bug checking canonical URLs in bundles with dashes in them
* Fix extension messages (modifier and normal messages reversed)
* Change how error location paths are reported in bundles for easier resolution (no counting!)
* fix bugs checking whether binding is allowed in corner cases

## Other code changes

* Rendering Improvements: Additional Bindings, Search Parameters, Operation Definitions
* FHIRPath implementations for comparable(), highBoundary(), lowBoundary()
* Fix list of canonical resources from VersionUtilities
* Fix bug parsing html entities in XHTML parser
* Rename extension to http://hl7.org/fhir/StructureDefinition/structuredefinition-imposeProfile
***NO_CI***
2023-02-15 10:13:36 +00:00
Grahame Grieve 26f7b3a803 FHIR-38789 SD_Dependencies extension needs work 2023-02-15 12:12:28 +11:00
Grahame Grieve d5d83bea9c fix broken links in R5 builds 2023-02-14 09:53:22 +11:00
Grahame Grieve 3a427385c5 FHIR QA driven changes 2023-02-12 17:53:41 +11:00
markiantorno 97604fdff5 Updating version to: 5.6.98-SNAPSHOT and incrementing test cases dependency. 2023-02-07 12:55:19 +00:00
markiantorno c91376f3b9 Release: v5.6.97
## Validator Changes

* no changes

## Other code changes

* Fix for Extensions moving in R5
***NO_CI***
2023-02-07 12:28:44 +00:00
Grahame Grieve 237670fa24 release 2023-02-07 14:18:12 +10:00
markiantorno eec7c33e63 Updating version to: 5.6.97-SNAPSHOT and incrementing test cases dependency. 2023-02-05 21:04:53 +00:00
markiantorno 729e7afb33 Release: v5.6.96
## Validator Changes

* no changes

## Other code changes

* Fix bug with duplicate value in getResourceNames()
***NO_CI***
2023-02-05 20:42:24 +00:00
markiantorno b3cebe7bc6 Updating version to: 5.6.96-SNAPSHOT and incrementing test cases dependency. 2023-02-03 20:09:35 +00:00
markiantorno 1696b56b50 Release: v5.6.95
## Validator Changes

* Fixes for FHIRPath as() operator in r4 and r5

## Other code changes

* no changes
***NO_CI***
2023-02-03 19:45:12 +00:00
markiantorno ea41a8b6a6 Updating version to: 5.6.95-SNAPSHOT and incrementing test cases dependency. 2023-02-02 17:07:22 +00:00
markiantorno 67329e20ad Release: v5.6.94
## Validator Changes

* no changes

## Other code changes

* Test release
***NO_CI***
2023-02-02 16:34:58 +00:00
markiantorno e922cc2a97 Updating version to: 5.6.94-SNAPSHOT and incrementing test cases dependency. 2023-02-01 07:27:59 +00:00
markiantorno 4e97bb0d5a Release: v5.6.93
## Validator Changes

* Fix for NPE rendering resources
* Consider CanonicalResource to be a CanonicalResource when validating profile references
* Work around error in R5 sdf-29 invariant

## Other code changes

* XHTML processing: Cater for "." in XML element and attribute names
* Handle R3 encoding of primitive values when validating profiles
* Improve error messaging when validating StructureDefinition
* Temporary Support for MedicationStatement in R5
* Work around for Identifier.use = ? in THO R5 package (old error)
* Rework Package API to allow for authentication on package servers
* Structure mapping now finds source Structure Definition by URI and sets ParserBase logical property appropriately.
* DOn't convert ig-r4 when converting package versions
***NO_CI***
2023-02-01 07:02:20 +00:00
Grahame Grieve 4a79e89f62 Merge remote-tracking branch 'origin/master' 2023-02-01 14:49:19 +11:00
Grahame Grieve 2cc8ff5e23 extension related validation fixes 2023-02-01 14:49:14 +11:00
Neelima Karipineni 61e63b128a
Enhancements to StructureMap transform to support logical models as source and value set lookup (#1092)
* implement resolveValueSet from AHDIS Matchbox

* get SD from map source type, set logical model

* test for getSourceResourceFromStructureMap DefinitionException

* test resolveValueSet

* test transform logical source

* fix formatting
2023-01-31 16:56:02 -05:00
Grahame Grieve 08ed54fd35 Rework Package API to allow for authentication on package servers 2023-01-31 10:32:21 +11:00
Grahame Grieve bda3a74b40 handle R3 encoding of primitive values when validating profiles 2023-01-31 07:23:33 +11:00
dotasek f5f03442aa Better error description 2023-01-27 11:22:37 -05:00
markiantorno cb441456a8 Updating version to: 5.6.93-SNAPSHOT and incrementing test cases dependency. 2023-01-20 23:14:26 +00:00
markiantorno dc677cad51 Release: v5.6.92
## Validator Changes

* update FHIRPath implementation for corrections to 'as' (R5 only in validator)
* Critical Security fix: enforce correct paths when unpacking archives (SecurityAdvisory-1082, CVE TBA)

## Other code changes

* Update to latest FHIRPath for older versions
* Add new ElementModel based parser for StructureMaps
* go-publish related changes
* FTP Client upload and logging improvements
* Refactor base64 handling for Android compatibility

## Security Note

The validator unzips archive files to the local file system when
it is scanning zip files it has been asked to validate, and when it is
installing packages. These processes are now resistant to the zip-slip
vulnerability.
***NO_CI***
2023-01-20 22:57:29 +00:00
dotasek b50aec5912
Advisory fix 1 (#1089)
* Update cache and comparison downloads to use https

* Zip Slip tests and fix

* Zip Slip tests 2 and fix

* Add missing tempDir child in ScannerTest

* Add win format zip test

* Add tests to r4b

* Add tests and fixes for slips in tgz processing

* Update fhir-test-cases version
2023-01-20 16:56:57 -05:00
Grahame Grieve 7cc01ef7db update new FHIRPath for older versions 2023-01-19 07:57:05 +11:00
markiantorno 4367813a2c Updating version to: 5.6.92-SNAPSHOT and incrementing test cases dependency. 2023-01-17 21:59:38 +00:00
markiantorno 7b22d0355b Release: v5.6.91
## Validator Changes

* Fixed validation of URNs
* Check profiles don't have slicing on roof

## Other code changes

* Fix significant performance issue with profile xls generation
* Fix issue with setProperty dropping extensions in R3 - R5
* Debug logging improvements generating snapshots
* Fix issues with types missing in CDA IGs
* Fix problem converting ActivityDefinition R4(B)/R5
* More work on FTP Client
***NO_CI***
2023-01-17 21:40:28 +00:00
Grahame Grieve 829cea8d33 Add check for slicing at the root of a profile 2023-01-17 11:41:42 +11:00
Grahame Grieve 41abbb21a0 fix debug logging for snapshot generation 2023-01-17 05:36:44 +11:00
Grahame Grieve 4b1a3dba46 Improve URN validation 2023-01-16 22:13:53 +11:00
markiantorno c52777c462 Updating version to: 5.6.91-SNAPSHOT and incrementing test cases dependency. 2023-01-14 06:35:33 +00:00
markiantorno ac16aae300 Release: v5.6.90
## Validator Changes

* Better tracking and reporting of snapshot generation issues
* Update FHIRPath implementation to R4 with all corrections and extensions from R5 implemnetation

## Other code changes

* Inclusion of SAXON dependency for processing XSLT
* Error message spacing correction
* Basic FTPClient implementation
* test NPE in markdown processing
* go-publish support
* Start implementing loading structure maps with validation
***NO_CI***
2023-01-14 06:17:06 +00:00
markiantorno b6cec730b5 Updating version to: 5.6.90-SNAPSHOT and incrementing test cases dependency. 2023-01-06 02:08:34 +00:00
markiantorno a6745a9016 Release: v5.6.89
## Validator Changes

* Add support for fhir_comments in R2/R2B
* Add validator checking around versions in extension URLs
* Fix bug generating cross-version extensions

## Other code changes

* Fix minor NPEs running IG publisher
* Add new PE module (PEDefinition/PEInstance)
* Add support for liquid filters (resolve FHIRPath conflict)
* Fix up round-tripping of XPath constraints R4/R5
* Refactor R5 ProfileUtilities (and move rendering to rendering package)
* Fix appending text when generating snapshots
***NO_CI***
2023-01-06 01:51:20 +00:00
Grahame Grieve b014401dd4 refactor profile rendering (more to StructureDefinitionRenderer) 2023-01-01 11:12:44 +11:00
dotasek b404c89aa9
Profile Utilities Refactor 2 (#1047)
* Add test util for diff

* Start moving pathprocessor params into dedicated object

* Move diff to Params

* Move base and diff Limits to params

* Rename to newBaseCursor and newBaseLimit

* More renames

* Move url and webUrl to params

* Move profileName to params

* Add contextPathSource to params, adjust indent for processPaths calls

* Move contextPathTarget to params

* Code cleanup, unused variables + move trimDifferential to params

* Create PathSlicingParams

* Shuffle param order

* Move redirector to params

* Move sourceStructureDefinition to params

* Move derived to params

* Move debug statements to dedicated methods

* split processSimplePath

* split processPathWithSlicedBase

* Start splitting ProfilePathProcessor

* Move all params into ProfilePathProcessor

* Move all profile utility related classes to own package

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-12-23 09:27:42 -05:00
Grahame Grieve bb60a338d6 fix 2022-12-17 07:13:49 +11:00
Grahame Grieve 6b1ae35ef3 * Add validator support for fhir_comments in R2/R2B (#1042) + Add validator checks around versions in extension URLs 2022-12-17 07:11:06 +11:00
markiantorno aaa5c9d6a4 Updating version to: 5.6.89-SNAPSHOT and incrementing test cases dependency. 2022-12-16 01:40:27 +00:00