Commit Graph

949 Commits

Author SHA1 Message Date
hirra-farooq c4676c5dc9
Fix bug when converting resolved clinical status for allergy intolerance dstu3 -> r4 (#793) 2022-04-27 10:55:39 -04:00
markiantorno 5fc2e9d6ec Updating version to: 5.6.43-SNAPSHOT and incrementing test cases dependency. 2022-04-23 14:25:48 +00:00
markiantorno 4f5aa8754c Release: v5.6.42
## Validator Changes

* Fix invalid FHIR version bug when loading IGs with explicit FHIR version

## Other code changes

* Fix reverse references in GraphQL searches
* Regenerate R4B code for candidate final release (not quite final yet)
* Various minor fixes for bugs found doing R4B finalization (wildcard types, version difference comparisons)
***NO_CI***
2022-04-23 14:06:50 +00:00
Grahame Grieve b47b0653c4 moving FHIRPublication 2022-04-23 23:18:23 +10:00
Grahame Grieve fa92f85f3c Merge remote-tracking branch 'origin/master' 2022-04-22 07:36:53 +10:00
Grahame Grieve 10f2325e19 R4B quality fixes 2022-04-22 07:36:28 +10:00
Grahame Grieve c58516ce44 remove references to c:\temp 2022-04-20 09:59:30 +10:00
dotasek a7354f999e
Dotasek oe r4r5structuremapconversion (#775)
* Fix exception R5 to R4 of StructureMap #771

* Fix typo

* Enhance conversion from r5 to r4 + add failing test for r4 to r5

* WIP Convert R4 variable to R5 parameter and try to get correct dataType

* Clean up rough-work test

* Move static methods to FHIRPathConstant class

Co-authored-by: dotasek <david.otasek@smilecdr.com>
2022-04-13 18:22:58 -04:00
markiantorno 6328230f9f Updating version to: 5.6.42-SNAPSHOT and incrementing test cases dependency. 2022-04-12 04:03:54 +00:00
markiantorno 8785babf24 Release: v5.6.41
## Validator Changes

* Handle reslicing within the same profile
* Fix up wrong handling of context on exists() in FHIRPath
* Add hints to profiles around behavior of pattern on repeating elements
* Ignore all tooling extensions when validating
* support specifying an alternative version when loading source using -ig parameter
* Don't validate Bundle.entry.fullUrl as a reference to some other content

## Other code changes

* Improved output for unit test comparisons
* Fix conversion issues around Base64Binary
* Fix for R4/R5 DataRequirements conversion for DeviceUsage
* Add AdditionalBindings Rendering (draft)
* Display all designations when rendering ValueSets
* Fix bug where expansions have empty objects some times
* Fix R4B Snapshot generation
* Enable Linking to fragment CodeSystems
***NO_CI***
2022-04-12 03:31:27 +00:00
Grahame Grieve 06cf1fde21 Fix for DeviceUse renaming 2022-04-12 11:39:47 +10:00
dotasek a8da416ee3 Fix xml test + add unit tests 2022-04-11 14:57:10 -04:00
dotasek 2181cb14d5 Change tests to xml + fix breaking test 2022-04-11 14:10:53 -04:00
dotasek 8a48e657f3 Tests for Base64Binary 40_50 conversions and streaming 2022-04-08 14:37:42 -04:00
markiantorno 87fed0cfc8 Updating version to: 5.6.41-SNAPSHOT and incrementing test cases dependency. 2022-03-30 23:21:31 +00:00
markiantorno f80a28816c Release: v5.6.40
## Validator Changes

* Add further clarification to Value set imports warning message

## Other code changes

* Consistent use of string values for primitive type conversions
* Fix problem with generated NPM Packages
* Fix URls when processing markdown while generating snapshots
* Default output to console, with additional output available via -debug option in CLI.
* Bump jackson-databind version to fix security vulnerability.
***NO_CI***
2022-03-30 23:05:39 +00:00
dotasek d63a4db5be Clean up test imports + add constructor test 2022-03-21 12:18:38 -04:00
dotasek 3c5e90b86a Add tests and changes for Canonical10_40 2022-03-21 12:07:21 -04:00
dotasek 60bd73c34d Add tests + changes for 40_50 direct conversion 2022-03-21 11:33:01 -04:00
dotasek a5974bc8a5 Add tests + changes for 30_50 direct conversion 2022-03-21 11:19:54 -04:00
dotasek 3ce1809418 Add tests + changes for 10_30, 10_40, 14_50 direct conversion 2022-03-21 10:58:19 -04:00
dotasek a3f24af1a5 Add direct conversion tests for 10_50 + yet more UUID coverage fixes 2022-03-18 19:13:08 -04:00
dotasek 48f8b3ac2c Add tests + changes for Canonical + 1 more UUID coverage fix
Add changes for canonical
2022-03-18 15:15:51 -04:00
dotasek 48d6829abf Add tests and changes for Url 2022-03-18 15:03:01 -04:00
dotasek 6e45dd522e Merge remote-tracking branch 'origin/master' into dotasek-primitivetype-conversion-via-stringvalue 2022-03-18 14:09:12 -04:00
dotasek b7fbd3ce44 Add tests and changes for Time + fix skipped Uuid conversions 2022-03-18 14:09:01 -04:00
markiantorno b075c5695f Updating version to: 5.6.40-SNAPSHOT and incrementing test cases dependency. 2022-03-18 04:05:44 +00:00
markiantorno e053d5a260 Release: v5.6.39
## Validator Changes

* no changes
* Add messageid to OperationOutcome from Validation
* Add support for new rules around value set interpretation with multiple imported value sets (https://jira.hl7.org/browse/FHIR-25179)

## Other code changes

* Fix for FHIRPathEngine.funcReplaceMatches() incorrectly returning Boolean in DSTU2 & DSTU3
* Fix NPE Processing missing markdown in definitions when generating snapshots
* add support for .matchesFull() and fix .matches() in FHIRPath
* Fix core package identification when loading new R5 core packages
***NO_CI***
2022-03-18 03:46:59 +00:00
Grahame Grieve 48d87a2075
Merge branch 'master' into gg-202203-misc 2022-03-18 12:54:53 +11:00
dotasek 33ec1f640e Fix Uuid conversion
Since Uuids extend UriType, it was always gettting treated as a Uri instead of a Uuid
2022-03-17 19:14:29 -04:00
dotasek d0feacaaa8 Add tests and changes for Decimal 2022-03-17 15:41:07 -04:00
dotasek 90dad874ec Add changes for Oid 2022-03-17 14:38:44 -04:00
dotasek df4859004d Add tests for Oid 2022-03-17 14:15:42 -04:00
dotasek ebf0a4aa7d Add changes for UnsignedInt 2022-03-17 14:00:01 -04:00
dotasek 237e9ca14c Add changes for PositiveInt 2022-03-17 13:53:01 -04:00
dotasek 038f747939 Add changes for Integer 2022-03-17 13:42:33 -04:00
dotasek d98ac05703 Add tests for Integer, PositiveInt, UnsignedInt 2022-03-17 13:35:34 -04:00
dotasek bf14a1eebc Add changes for Id 2022-03-17 13:34:58 -04:00
dotasek 2beaece874 Add changes for Uuid 2022-03-17 10:45:58 -04:00
dotasek 6874e54b58 Add Id and UUID tests 2022-03-16 18:29:11 -04:00
dotasek 2241d8e12e Add tests and changes for Uri 2022-03-16 17:49:52 -04:00
dotasek 62df25971e Add changes for String 2022-03-16 17:41:56 -04:00
dotasek 90d9cf67d0 Add changes for Markdown 2022-03-16 17:30:46 -04:00
dotasek d42759a510 Add changes for Code 2022-03-16 17:10:22 -04:00
dotasek 2d1254fcac Return null for conversions where isEmpty() == true 2022-03-16 17:09:54 -04:00
dotasek b4f94c385d Add tests for Code, Markdown, and String types 2022-03-16 17:09:25 -04:00
dotasek 61b9d5e8c6 Exception: useValue for Base64Binary
Use Base64Binary getValue for Base64 conversion instead of getValueAsString.
2022-03-16 16:48:05 -04:00
dotasek ad49c9aecd Rename params helper method 2022-03-16 12:33:01 -04:00
dotasek b5b43836eb Add tests and changes for Base64Binary 2022-03-16 12:20:58 -04:00
Grahame Grieve 6f69736b05 fix typo in Dicom Package 2022-03-16 08:27:44 +11:00
dotasek 1a7e076479 Move precision checking code to setValueAsString 2022-03-15 16:49:51 -04:00
dotasek 6730275277 Add tests and changes for Instant 2022-03-15 15:59:22 -04:00
dotasek 02968b9b7a Add tests and changes for DateTime conversion 2022-03-15 12:58:59 -04:00
dotasek 209a5e777b Merge remote-tracking branch 'origin/master' into dotasek-primitivetype-conversion-via-stringvalue 2022-03-15 12:36:09 -04:00
dotasek 4068db73ff WIP Add tests for Primitive Types + use getValueAsString for conversion 2022-03-15 12:35:50 -04:00
markiantorno 8f5db15937 Updating version to: 5.6.39-SNAPSHOT and incrementing test cases dependency. 2022-03-14 21:48:39 +00:00
markiantorno 9ad69aca53 Release: v5.6.38
## Validator Changes

* no changes

## Other code changes

* Fix for FHIRPathEngine.funcReplaceMatches() incorrectly returning Boolean in DSTU2 & DSTU3
***NO_CI***
2022-03-14 21:32:32 +00:00
dotasek fb8e2cfa66 WIP Start building tests 2022-03-11 17:32:09 -05:00
Lloyd McKenzie 4c82c9c738 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into Branch_685ea98d 2022-03-11 11:21:55 -07:00
Lloyd McKenzie a6faece71b Added R4B releases to the R4<->R5 conversion process
Corrected release number for R4B to be 4.3xxx rather than 4.1xxx
2022-03-11 11:16:04 -07:00
markiantorno e4ce145a0b Updating version to: 5.6.38-SNAPSHOT and incrementing test cases dependency. 2022-03-11 03:21:07 +00:00
markiantorno e86c9afc7a Release: v5.6.37
## Validator Changes

* fix handling of xver extensions with choice sub-extensions
* validate consistency of extension modifier flag with extension use in a profile

## Other code changes

* more presenting extensions when rendering.
* Get package id from 'package' field when 'npm-package' unavailable
* Ignore META-INF contents from other dependencies while building Validator jar
* Fix to r5 TestingUtilities to allow NarrativeGenerationTests to pass.
* fix handling to xver extensions generating snapshots
***NO_CI***
2022-03-11 03:04:43 +00:00
Grahame Grieve 4d492980c3
Merge pull request #758 from lmckenzi/STU3-template-issue
Fix type conversion issue in converters.txClient.TerminologyClientR3
2022-03-11 10:47:37 +11:00
Grahame Grieve 791f16a05d fix failing tests. 2022-03-10 11:18:03 +11:00
Grahame Grieve a34c33c0c0 =fix r4b tests 2022-03-10 07:43:01 +11:00
Lloyd McKenzie 65853819d3 Hit this bug when handling resource expansions for an STU3 IG. This code would never have worked, so apparently nothing called it before now. 2022-03-04 10:03:55 -07:00
markiantorno 4909286a4b Updating version to: 5.6.37-SNAPSHOT and incrementing test cases dependency. 2022-02-26 05:00:46 +00:00
markiantorno 17bf21ecf8 Release: v5.6.36
## Validator Changes

* No changes

## Other code changes

* fix expansions where inactive = false (was wrongly including inactive codes)
***NO_CI***
2022-02-26 04:42:17 +00:00
markiantorno 9e693b6a03 Updating version to: 5.6.36-SNAPSHOT and incrementing test cases dependency. 2022-02-19 22:00:05 +00:00
markiantorno 685ea98d37 Release: v5.6.35
## Validator Changes

* no changes

## Other code changes

* fix various rendering issues from core spec
***NO_CI***
2022-02-19 21:28:34 +00:00
Grahame Grieve d66c5abec0 Add UTGCaseConvertor for future reference 2022-02-19 21:40:16 +11:00
markiantorno 73baca035e Updating version to: 5.6.35-SNAPSHOT and incrementing test cases dependency. 2022-02-16 05:52:52 +00:00
markiantorno edd2c43e64 Release: v5.6.34
## Validator Changes

* Improve code validation error when value set can't be supported on tx.fhir.org
* Hide error about regex in core package

## Other code changes

* Fix wrong URL links in processed markdown
* Don't let txCache errors stop the process
* Fix broken links in questionnaire +
***NO_CI***
2022-02-16 05:32:34 +00:00
Grahame Grieve 647d3efcee Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir 2022-02-16 13:15:19 +11:00
markiantorno 1d02e04edd Updating version to: 5.6.34-SNAPSHOT and incrementing test cases dependency. 2022-02-15 11:21:29 +00:00
Grahame Grieve fd36a5b0d2 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir 2022-02-15 22:17:36 +11:00
Grahame Grieve fcd1d1494a change location of dev server 2022-02-15 22:16:50 +11:00
markiantorno cf7415b33e Release: v5.6.33
## Validator Changes

* no changes

## Other code changes

* Fix error access experimental on canonical
***NO_CI***
2022-02-15 11:00:55 +00:00
markiantorno e1613a7087 Updating version to: 5.6.33-SNAPSHOT and incrementing test cases dependency. 2022-02-14 06:57:10 +00:00
markiantorno 4a8aeda4e9 Release: v5.6.32
## Validator Changes

* no changes

## Other code changes

* Fix NPE error in Patient renderer
***NO_CI***
2022-02-14 06:25:49 +00:00
markiantorno 4ab3fea400 Updating version to: 5.6.32-SNAPSHOT and incrementing test cases dependency. 2022-02-14 01:27:51 +00:00
markiantorno 04bb17783e Release: v5.6.31
## Validator Changes

* accept regex on ElementDefinition and ElementDefinition.type, and an error for regex on ElementDefintion.type (though core packages have it on the wrong place)
* fix handling of cross-version extensions on choice elements
* fix OID validation (accept 1.3.88 GTIN OID)
* only consider bindable types when checking for multi-type bindings

## Other code changes

* Fix definitions in ListResource ("List" not "ListResource")
* introduce fhir-tools-settings.conf (see https://confluence.hl7.org/display/FHIR/Using+fhir-tool-settings.conf)
* Rendering fixes & improvements for Questionnaire and Patient and partial dates
* improvements to relative link handling in markdown when generating snapshots
* updates to package tools for changes to package.json#type (see https://confluence.hl7.org/pages/viewpage.action?pageId=35718629#NPMPackageSpecification-Packagemanifest)
* fix semver handling for tags in versions
* Bump mockito and bytebuddy versions for Java 17 compatibility & fix Kotlin ref
***NO_CI***
2022-02-14 01:08:37 +00:00
Grahame Grieve 0fa757b426 Fix markdown relative link issues + start working on additional bindings extension 2022-02-12 07:53:23 +11:00
markiantorno 045299ae7a Updating version to: 5.6.31-SNAPSHOT and incrementing test cases dependency. 2022-02-07 15:56:51 +00:00
markiantorno 7ee476a9b6 Release: v5.6.30
## Validator Changes

* no changes

## Other code changes

* Use builders for SimpleWorkerContext and ValidationEngine to enforce initialization order for caches and capabilities
***NO_CI***
2022-02-07 15:07:54 +00:00
dotasek 0e3e410ea1 Merge branch 'master' into simpleworkercontextbuilder 2022-02-04 09:50:42 -05:00
markiantorno 703f907289 Updating version to: 5.6.30-SNAPSHOT and incrementing test cases dependency. 2022-02-03 23:15:06 +00:00
markiantorno 9a89045bac Release: v5.6.29
## Validator Changes

* no changes

## Other code changes

* Fix package location for CacheVerificationLogger
***NO_CI***
2022-02-03 22:42:27 +00:00
dotasek 239c436ca5 Code cleanup 2022-02-02 10:07:13 -05:00
dotasek 847ede5f88 Refactor SimpleWorkerContext and ValidationEngine 2022-02-01 15:28:19 -05:00
markiantorno c41fcf9fa9 Updating version to: 5.6.29-SNAPSHOT and incrementing test cases dependency. 2022-02-01 02:57:54 +00:00
markiantorno fe073b6a8a Release: v5.6.28
## Validator Changes

* no changes
* Add ability to [compile a map file to a StructureDefinition](https://confluence.hl7.org/display/FHIR/Using+the+FHIR+Mapping+Language#UsingtheFHIRMappingLanguage-runtransformsjavavalidator)
* Add knowledge of additional R5 extensions for StructureDefinitions
* Fix problem validating extension context on choice types
* Add hint when binding found on element with multiple types
* Fix validator to guess system on all uses of code (not just most)

## Other code changes

* Use cached terminology server responses for unit and integration tests.
* Add more HTTP logging
* Clean up various issues with graphQL and polymorphic elements
* Add better support for date/time rendering
* Significant speed improvement for terminology caching
***NO_CI***
2022-02-01 02:36:54 +00:00
dotasek 09ddd964ff Merge remote-tracking branch 'origin/master' into tx-server-cache-analysis 2022-01-21 17:39:51 -05:00
markiantorno f69a30421f Updating version to: 5.6.28-SNAPSHOT and incrementing test cases dependency. 2022-01-21 21:43:26 +00:00
markiantorno 90008b7744 Release: v5.6.27
## Validator Changes

* no changes

## Other code changes

* Fix unnecessary JsonParser/XmlParser class load
***NO_CI***
2022-01-21 21:12:00 +00:00
markiantorno 8818acfbf8 Updating version to: 5.6.27-SNAPSHOT and incrementing test cases dependency. 2022-01-21 16:20:40 +00:00
markiantorno b82cc42663 Release: v5.6.26
## Validator Changes

* no changes

## Other code changes

* Avoid unnecessary JsonParser/XmlParser class load
***NO_CI***
2022-01-21 16:02:59 +00:00
dotasek 4826424499 Make additional caches to cover NativeHostService and ValidationService 2022-01-19 18:36:39 -05:00
dotasek 0a3e9d3f31 Merge branch 'master' into tx-server-cache-analysis 2022-01-18 16:10:21 -05:00
dotasek d9d0f22ff3 cache CapabilityStatement and TerminologyCapabilities 2022-01-18 16:09:59 -05:00