Commit Graph

2645 Commits

Author SHA1 Message Date
markiantorno 6a187a9232 Updating version to: 6.0.22-SNAPSHOT and incrementing test cases dependency. 2023-07-07 12:36:19 +00:00
markiantorno 45ae02cf1d Release: v6.0.21
## Validator Changes

* Fix up processing conditions in -watch mode
* Fixes for validating against logical models (for fixed up CDA core package)
* Better testing of extension context (when limited to profile)
* Fix handling of UCUM codes when no terminology server
* Report hints and warnings on some code validation that had been not reported
* Better validation of valuesets when checking derived profiles

## Other code changes

* Render reference identifier if there is one when rendering references
* Hide empty place holder column when rendering by profile
* Fix npe rendering extensions + improve base64 presentation
* OMOP terminology importer
* update SPDX code system in R4/R4B for support for not-open-source
* Fix up type handling for conversions between R4/R4B and R5 (OperationDefinition fix)
***NO_CI***
2023-07-07 12:10:05 +00:00
Grahame Grieve c6e68dc9c6 Fixes to validator for new CDA package (proper handling of logical model types) 2023-07-07 09:38:55 +10:00
Grahame Grieve 9a48340b6c render reference identifier if there is one 2023-07-07 05:01:16 +10:00
Grahame Grieve b46f968665 hide empty place holder column 2023-07-07 05:00:59 +10:00
Grahame Grieve 0004e06a5d fix npe rendering extensions + improve base64 presentation 2023-07-07 05:00:51 +10:00
Grahame Grieve 7166d55153 better validation of derived valuesets + better handling of validation failures on UCUM when no terminology server 2023-07-05 07:22:30 +10:00
Grahame Grieve 70e123e69b Fix up rendering of base64 content 2023-07-05 07:18:12 +10:00
markiantorno 6db701767a Updating version to: 6.0.21-SNAPSHOT and incrementing test cases dependency. 2023-06-30 23:19:08 +00:00
markiantorno 6a6c425562 Release: v6.0.20
## Validator Changes

* no changes

## Other code changes

 * Fix for SPDR not-open-source in code
 * fix name and title in VSAC import process
 * More work on Android support + fix issues in NPM package installation that caused
***NO_CI***
2023-06-30 22:52:51 +00:00
markiantorno 3c8e26f078 Updating version to: 6.0.20-SNAPSHOT and incrementing test cases dependency. 2023-06-30 05:37:45 +00:00
markiantorno 3b82a4d829 Release: v6.0.19
## Validator Changes

* no changes

## Other code changes

* Fix for SPDR not-open-source in code
* fix name and title in VSAC import process
* More work on Android support
***NO_CI***
2023-06-30 05:08:20 +00:00
Grahame Grieve de8a2f0f73 Re-add support for not-open-source in the R5 code base 2023-06-30 08:41:02 +10:00
markiantorno 06a1d523a3 Updating version to: 6.0.19-SNAPSHOT and incrementing test cases dependency. 2023-06-29 05:12:43 +00:00
markiantorno 76955fa3d5 Release: v6.0.18
## Validator Changes

* Fix issue loading SPDX value set + Fix missing code for 'not-open-source'
* Allow target to be treated as source when validating FML
* Fix issues validating names and urls for logical models
* Don't duplicate warnings about missing expressions on invariants in R5

## Other code changes

* Handle case where base hasn't got a snapshot generating snapshots
***NO_CI***
2023-06-29 04:47:28 +00:00
Grahame Grieve 236cf06946 Handle case where base hasn't got a snapshot generating snapshots 2023-06-29 13:17:15 +10:00
markiantorno 7ffbe7703d Updating version to: 6.0.18-SNAPSHOT and incrementing test cases dependency. 2023-06-28 07:13:43 +00:00
markiantorno 345151b132 Release: v6.0.17
## Validator Changes

* Fix check for correct type name use in logical models (for CDA)
* Fix bug loading packages (introduced working on minimal loading)
* Fir NPE processing R3 Structure Definitions
* exempt ele-1 from constraint consistency checking
* Add -watch-scan-delay and -watch-settle-time
* fix missing error validating structure maps
* Fix bug with erroneous warning in snapshot generation about profile not being found
* Update SPDX code system to latest version
* Output proper filename in validation log

## Other code changes

* Refactor version utility code
* Fix help placeholders
* Better error when handling loading resources
* fix duplicate element generation in CDA.AD type snapshot generation
* Fix message about rendering problem. Actual solution... not sure.
* Minimal Memory model changes for Npm for Android
***NO_CI***
2023-06-28 06:47:19 +00:00
Grahame Grieve 9b94e6a1ec Fix test for correct type name in logical models (CDA) 2023-06-28 15:10:20 +10:00
Grahame Grieve 284ad1c2be fix bug loading package 2023-06-28 11:06:09 +10:00
Grahame Grieve 704d498300 Fix NPE handling R3 structure definitions 2023-06-28 05:56:14 +10:00
Grahame Grieve 3bb5e8d06d better error handling loading resources 2023-06-27 22:18:35 +10:00
Grahame Grieve 1a144091c4 fix duplicate element generation in CDA.AD type snapshot generation 2023-06-27 22:18:14 +10:00
Grahame Grieve 40380ff0f3 Fix message about rendering problem. Actual solution... not sure. 2023-06-24 09:06:19 +10:00
Grahame Grieve 189c3c7b7d Fix bug with erroneous warning in IG publisher log about profile not found 2023-06-24 09:06:01 +10:00
Grahame Grieve 2f253f3457 Update SPDX implementation 2023-06-24 08:55:51 +10:00
markiantorno 67cb3006f2 Updating version to: 6.0.17-SNAPSHOT and incrementing test cases dependency. 2023-06-21 07:40:48 +00:00
markiantorno 8bd0f0b1ad Release: v6.0.16
## Validator Changes

Post DevDays Release - many significant changes!

* Add ```-watch-mode``` parameter (See [doco](https://confluence.hl7.org/display/FHIR/Using+the+FHIR+Validator#UsingtheFHIRValidator-Watchmode))
* Start checking constraint expressions defined in profiles and logical models, and update FHIRPath for logical models
* Start checking ElementDefinition.mustHaveValue and ElementDefinition.valueAlternatives
* Start validating derived questionnaires
* Tighten up checking on FHIRPath - enforce use of ```'```, and don't accept ```"``` for string delimiters
* Add ```-allow-double-quotes-in-fhirpath``` parameter ([doco](https://confluence.hl7.org/display/FHIR/Using+the+FHIR+Validator#UsingtheFHIRValidator-LegacyFHIRPathSetting))
* Fix error when validating profiles that mix canonical() and Reference() types
* Fix extension context checking
* Fix erroneous FHIRPath expression eld-11 when loading
* Fix incomplete support for ```-display-issues-are-warnings``` parameter
* Fix broken NullFlavor binding in R4
* Fix various NPE errors doing value set validation (+ logging tx operations)
* Minor performance improvements to start up time
* Auto-update implied slicing elements when min < slice min

## Other code changes

* Add CodeQL to the build process
* Various NPE fixes
* Add getValueAsString(TemporalPrecisionEnum) method to date/time types
* Fix rendering for unresolvable ValueSets
* Remove r4b eclipse project files
* Upgrade multiple dependency libraries (per CodeQL)
* Only record sorting errors when generating snapshots when debug mode is on
* Tighten up SSL certificate checking
* Partial refactor of CLI parameter handling
* Fix path regex (per CodeQL)
* Remove erroneous logging from conversion tests
* Rendering improvements for various profile related extensions
* More work on TxTests operation (lenient wrt extensions)
* Fix handling of summary extension (delete duplicate tools summary extension, and don't inherit it)
* Reprocess URLs in Markdown extensions on both StructureDefinition and ElementDefinition
* Improve URL detection in markdown when reprocessing URLs
***NO_CI***
2023-06-21 07:09:07 +00:00
Grahame Grieve 6effe6ebe9 update FHIRPath for logical models and nested type checking and fix repeat() checking 2023-06-21 09:22:18 +10:00
Grahame Grieve 04f7805be4 Auto-update extension min- slicing + fix handling of summary extension + update markdown element url handling + update url detection in markdown 2023-06-21 09:21:05 +10:00
Grahame Grieve 52abef6f2c Auto-update extension min- slicing + fix handling of summary extension + update markdown element url handling + update url detection in markdown 2023-06-21 09:20:35 +10:00
Grahame Grieve 4e5c501b1f
Merge pull request #1315 from hapifhir/do-20230619-datetimetype-string-precision
New getValueAsString(TemporalPrecisionEnum) method for DateTimeType
2023-06-20 09:56:40 +10:00
Grahame Grieve 2607d028a7 fix compile problem 2023-06-20 09:15:36 +10:00
Grahame Grieve 551892c095 Merge remote-tracking branch 'origin/master' 2023-06-20 09:11:51 +10:00
Grahame Grieve 9cf8e0368c fix up extension context checking 2023-06-20 08:36:22 +10:00
Grahame Grieve ec7b79bc1e Fix rendering for unresolvable value sets 2023-06-20 07:02:26 +10:00
dotasek ae59d97ba5 Document new method, add to all FHIR versions 2023-06-19 15:41:04 -04:00
dotasek 92fb21de1e Test and new getValueAsString(TemporalPrecisionEnum) method 2023-06-19 14:47:39 -04:00
dotasek 829882773a
More use of dependencyManagement, bump guava (#1313) 2023-06-19 12:26:21 -04:00
dotasek 195dcc0898
Fix unimplemented method in test (#1312) 2023-06-19 10:51:10 -04:00
Grahame Grieve 394077c8ec fix NPE doing valueset validation 2023-06-19 22:43:43 +10:00
Grahame Grieve 19d3952b11 Validate FHIRPath constraints in IGs and profiles 2023-06-19 22:42:02 +10:00
Grahame Grieve d1a785e5ad only record sorting errors if debugging snapshot generation 2023-06-19 22:40:08 +10:00
Grahame Grieve 38b5295f8d fix error logging headers 2023-06-19 22:39:42 +10:00
Grahame Grieve 96cadbed47
Merge pull request #1259 from hapifhir/Type-validation-fixes
Fix problem when profiling a base type that supports both Reference a…
2023-06-19 02:36:33 +10:00
Grahame Grieve 8bd4fc3ee6
Merge pull request #1309 from hapifhir/do-20230615-tx-request-lenient-display
Add lenient-display-validation param
2023-06-19 02:33:17 +10:00
Grahame Grieve 297313b30a Fix issue with broken NullFlavor binding in R4 2023-06-18 13:02:21 +10:00
Grahame Grieve dfb4404ce6 Add support for mustHaveValue and valueAlternatives + render imposesProfile + compliesWithProfile 2023-06-18 13:00:58 +10:00
Grahame Grieve 11eb2cef53 fix index error 2023-06-17 09:41:15 +10:00
Grahame Grieve 99895e7a97 Performance improvements for validation, including -watch engine 2023-06-17 09:40:34 +10:00
Grahame Grieve 2d0dcbb803 rendering improvements for profile extensions 2023-06-17 09:38:27 +10:00
dotasek f4b6ff2f6e Refactor and introduce test 2023-06-15 10:38:03 -04:00
dotasek 10c50a14f0 Add lenient-display-validation param 2023-06-15 08:31:30 -04:00
Grahame Grieve 481698cf24 Fix up terminology tests to ignore irrelevant extensions 2023-06-12 17:17:30 +01:00
dotasek ff7997d7d2
Fix older jetbrains annotations transitive dependency (#1299) 2023-06-09 14:43:49 -04:00
markiantorno 8237fb862b Updating version to: 6.0.16-SNAPSHOT and incrementing test cases dependency. 2023-06-08 21:23:36 +00:00
markiantorno cc14a4142f Release: v6.0.15
## Validator Changes

* no changes

## Other code changes

* Update commons-beanutils and apache.poi dependencies
***NO_CI***
2023-06-08 20:56:04 +00:00
dotasek 7b05c7514e
Bump poi version, remove unused old dependencies (#1296) 2023-06-08 10:47:37 -04:00
markiantorno 10f466487b Updating version to: 6.0.15-SNAPSHOT and incrementing test cases dependency. 2023-06-08 05:03:27 +00:00
markiantorno 3969ac75c4 Release: v6.0.14
## Validator Changes

* no changes

## Other code changes

* Fix bugs in language handling
* Implement Trivy vulnerability scanning and update POI and okhttp libraries
***NO_CI***
2023-06-08 04:33:30 +00:00
markiantorno 619703dbf8 Updating version to: 6.0.14-SNAPSHOT and incrementing test cases dependency. 2023-06-07 13:14:17 +00:00
markiantorno b704ea50fc Release: v6.0.13
## Validator Changes

* no changes

## Other code changes

* add clear() to JsonObject
***NO_CI***
2023-06-07 12:48:04 +00:00
Grahame Grieve bfdb28b96e add JsonObject.clear() 2023-06-07 13:57:56 +02:00
markiantorno a605d944bc Updating version to: 6.0.13-SNAPSHOT and incrementing test cases dependency. 2023-06-06 21:27:18 +00:00
markiantorno 8edd61a197 Release: v6.0.12
## Validator Changes

* Improve message when there's multiple display options

## Other code changes

* Fix loading issue with r5 extensions
* NPM package compression improvements
* Update language file handling to handle context
* Remove logical models in minifier, and other improvements
* Auto update minimum slicing cardinality when slicer is assumed (extensions)
***NO_CI***
2023-06-06 20:55:08 +00:00
Grahame Grieve a4f54f519f
Merge pull request #1290 from hapifhir/gg-202206-cardinality-fixes
Gg 202206 cardinality fixes
2023-06-05 23:26:13 +02:00
Grahame Grieve 01b4219259 update language file handling to handle context properly 2023-06-05 21:16:51 +02:00
Grahame Grieve fe7cd1f39a Clean up extension loading issue 2023-06-05 21:16:28 +02:00
Grahame Grieve fd346cc67b Auto update minimum slicing cardinality when slicer is assumed (extensions) 2023-06-05 21:16:14 +02:00
Grahame Grieve 1c4ef1fa00 Improve message when there's multiple display options 2023-06-05 21:15:31 +02:00
Grahame Grieve bf19a2d2fa Remove logical models in minifier, and other improvements 2023-06-05 21:14:56 +02:00
markiantorno 72eee9cab7 Updating version to: 6.0.12-SNAPSHOT and incrementing test cases dependency. 2023-06-02 14:24:34 +00:00
markiantorno 44db954743 Release: v6.0.11
## Validator Changes

* no changes

## Other code changes

* Increment CQFramework dependency
***NO_CI***
2023-06-02 13:58:04 +00:00
Grahame Grieve c31836e734 better error reporting when parsing fails outright 2023-06-01 06:58:46 +03:00
Grahame Grieve d4d5b42aa1 add Resource Dependency walker + Resource Minifier functionality 2023-05-31 06:32:55 +03:00
markiantorno f238d1af14 Updating version to: 6.0.11-SNAPSHOT and incrementing test cases dependency. 2023-05-29 22:43:58 +00:00
markiantorno edd06865c7 Release: v6.0.10
## Validator Changes

* no changes

## Other code changes

* Delete unused package import that breaks downstream JavaDoc
***NO_CI***
2023-05-29 22:14:49 +00:00
dotasek 6626fe1952
Remove unused dependency (#1283) 2023-05-29 16:57:20 -04:00
markiantorno 253357e5aa Updating version to: 6.0.10-SNAPSHOT and incrementing test cases dependency. 2023-05-29 13:44:41 +00:00
markiantorno 4014698c7d Release: v6.0.9
## Validator Changes

* Add support for "Obligation Profiles" (see https://chat.fhir.org/#narrow/stream/179177-conformance/topic/Proposed.20new.20Profile.20features)
* Adjust slice min/max checking to ignore type slices (rules are different in this case)
* Properly handle validating mime/type when terminology server is not available

## Other code changes

* Rework Pipelines - more stability and quicker
* Fix bug where elementmodel.Element.copy() didn't clone children. Users of the Element Model (not the normal model) should check all uses of copy. (Only known users are Validator + IG publisher)
* Add nimbus & ZXing to core library dependencies for forthcoming improved SHC/SHL support
***NO_CI***
2023-05-29 13:18:12 +00:00
Grahame Grieve 8c7a5bf724 fix bug checking slice min/max 2023-05-29 03:38:48 +03:00
Grahame Grieve fe474b1ad2 properly handle... 2023-05-29 01:13:45 +03:00
Grahame Grieve 783a8cf28b Support for Obligation Profiles 2023-05-29 01:12:46 +03:00
Grahame Grieve ece4a44ff2 Merge remote-tracking branch 'origin/master' 2023-05-28 15:50:39 +03:00
Gregor Lichtner aaa7490a22 copying element children 2023-05-26 15:42:57 +02:00
Grahame Grieve d60b9009b2 get control over caching for terminology testing 2023-05-25 16:41:52 +10:00
dotasek 55ac916133
Refactor Pull Request Pipeline (#1273)
* Try multiple module target directories

* Try different format

* Try displaying cache task name + multiple caches

* Name the maven artifact cache step + add all modules

* Start consuming cached builds + targets

* Fix job list

* Fix other bad params

* Fix bad indent

* Try test task

* Try different value syntax

* Add all modules

* See if cacheing works from linux to windows

* Refactor as testUnits

* Trim tested modules

* missing colon

* It's not an image anymore, it's a unit

* Test exec

* Test exec for real

* Fix parameters format

* Fix r5 url for package fetch (#1260)

* Fix r5 url for package fetch

* Revert previous commit

* Make r6 the only packages fetched from build.fhir.org

* Update RELEASE_NOTES.md

* Update RELEASE_NOTES.md

* Release: v6.0.6
## Validator Changes

* no changes

## Other code changes

* Update R6 package tgz fetching
***NO_CI***

* Updating version to: 6.0.7-SNAPSHOT and incrementing test cases dependency.

* Try using parameters

* Try another way

* Try third way

* Try fourth way

* Try fifth way

* Try 6

* Try 7

* Apply refactor

* Try iterating over images

* Try iterating over images 2

* Test all images

* Conditionally test multiplatform modules

* Test JDKs too

* Fix and()

* Add JDK image to job names + test JDKs for exec

* Better job name for setup

* Fix names

* more granular test configs

* fix repeated jobs

* name for exec jobs

* fix missing s

* Add placeholder Codecov job

* Fix complaint about job name

* Try moving codecov to test template

* Add explicit module for test

* Try setting up job name

* Try setting up job name

* Change job names to use underscore and alphanum

* Move codecov job back to master-branch

* Fix condition to match ubuntu_java_11

* Publish test reports

* Publish test reports

* use value for artifact name

* Use variable for skipJaCoCo conditions

* Skip validation temporarily

* Change artifact names.

* add jacoco:report-aggregate task

* remove leftover cut and paste line

* Improve test job display name

* Add jacoco results + codecov upload

* Fix accidental inclusions in module loop

* Remove JaCoCo coverage condition

* Bump down JaCoCo plugin

* Rearrange JaCoCo plugin

* Fix surefire and jacoco output

* Add jacoco to pipeline

* Try skipping maven cache step

* Add codecov token

* Add missing MAVEN_CACHE_FOLDER

* Change variable syntax

* Move setup to own template

* Change setup template

* rearrange pipeline yml, re-enable validation test module

* Update core version bumps

* Temporarily disable tests

* Move to PR pipeline + Fix unused pool declaration

* Disable some more.

* Restore disabled and ignored tests

* Fix task name + clean up old prototype

---------

Co-authored-by: markiantorno <markiantorno@gmail.com>
2023-05-24 13:09:13 -04:00
markiantorno 8f52ad8fe8 Updating version to: 6.0.9-SNAPSHOT and incrementing test cases dependency. 2023-05-24 14:51:20 +00:00
markiantorno 4f90606776 Release: v6.0.8
## Validator Changes

* Snapshot Generation Changes:
** Check for slicenames without any slicing
** Check that slice names are unique
** Check for additional slicing rules in a set of slices
** Check that the minimum cardinality of a set of slices is correct
* Clean up duplicate errors when dates/dateTimes/instants have invalid formats
* Handle unknown code systems consistently when validating coded elements
* Handle sub-slicing case where slice matches both the slice definition and the sub-slice definition

## Other code changes

* Add support for R4B to loader
* Change type if cache-id parameter
* Change snapshot generation to not update documentation from profile for elements with profiled types that are not extensions
* Add support for TestPlan and SubscriptionTopic in R4 IGs
***NO_CI***
2023-05-24 14:23:30 +00:00
Grahame Grieve 442d9286b5 more checking slice min and max 2023-05-24 22:28:53 +10:00
Grahame Grieve 7eea5158c5 fix npe 2023-05-24 19:06:34 +10:00
Grahame Grieve df26951336 fix npe 2023-05-24 16:57:22 +10:00
Grahame Grieve 0ec2dfab78 Add support for SubscriptionTopic in R4 IGs 2023-05-24 16:57:09 +10:00
Grahame Grieve e724c9d58b
Merge pull request #1274 from hapifhir/ja_20230523_1262_fix_asstringvalue
Fix asStringValue on IdType
2023-05-24 10:37:28 +10:00
Grahame Grieve 426fe1083a
Merge pull request #1265 from rettema/testplan_40_50
#1264 add R5 TestPlan conversion classes to R3, R4 and R4B
2023-05-24 10:37:07 +10:00
James Agnew 0eca8d14ba Fix asStringValue on IdType 2023-05-23 17:02:23 -04:00
Grahame Grieve 87d8323c91
Merge branch 'master' into gg-202304-more-snapshot 2023-05-24 06:52:50 +10:00
Grahame Grieve a7026ca51d
Merge pull request #1272 from pnewhook/getLink-enum-bug
Bundle.getLink(String) comparing string to enum
2023-05-24 06:15:58 +10:00
Richard Ettema 39d221736c
Merge branch 'hapifhir:master' into testplan_40_50 2023-05-23 16:05:09 -04:00
Peter Newhook 671ab4b964 Compare the string value of a LinkRelationTypes enum in Bundle.getLink(String)
Fixes #1266
2023-05-23 11:41:12 -04:00