1430 Commits

Author SHA1 Message Date
Grahame Grieve
d29926b4a5 Fix github urls 2024-09-30 08:31:28 +10:00
Grahame Grieve
b05d4b35ea Handle tx server issue 2024-09-24 20:33:55 -04:00
Grahame Grieve
a1f014730e Add response time to tx log 2024-09-24 20:25:02 -04:00
Grahame Grieve
b37073592b set default language to tag not display 2024-09-23 09:12:17 -04:00
Grahame Grieve
6314ad61bb
Merge pull request #1729 from hapifhir/EllipseSupport
Added support for tracking whether elements are ellipsed and for rend…
2024-09-22 08:51:39 -04:00
Grahame Grieve
ce49473e07
Merge pull request #1745 from hapifhir/do-20240909-package-lock-cleanup
Package Cache lock cleanup
2024-09-22 08:00:42 -04:00
Grahame Grieve
e76c6e1da9 Merge remote-tracking branch 'origin/master' 2024-09-22 06:41:41 -04:00
Grahame Grieve
3cec189333 Fix id/idref to resolve in document if in a document 2024-09-22 06:40:15 -04:00
Grahame Grieve
fedf7e9e6d Add more debugging to validation failure 2024-09-22 06:39:28 -04:00
Grahame Grieve
8cfcbf389e Fix various issues rendering and validating additional bindings with usage contexts 2024-09-21 00:35:01 -04:00
dotasek
d57008510c Use ManagedFileAccess for temp file creation 2024-09-19 13:31:38 -04:00
dotasek
356a70a845 Re-introduce sleep to lockfile creation wait. 2024-09-19 12:53:17 -04:00
dotasek
c81c631ae8 Use rename to bypass windows lockfile issue 2024-09-19 12:22:29 -04:00
dotasek
cce4d108ce Fix classpath on windows + workaround for edge case on lock file 2024-09-19 10:48:30 -04:00
dotasek
0fd25a6a98 Move file exists logic into onStart + move file delete before unlock 2024-09-18 19:23:00 -04:00
dotasek
b30134abfc WIP Switch to apache commons instead of nio for directory monitor 2024-09-18 18:40:13 -04:00
dotasek
048aa2abe5 More testing 2024-09-18 16:07:00 -04:00
dotasek
48066859d5 Check for lock owning process when trying to fix corrupt packages 2024-09-18 11:30:59 -04:00
dotasek
9a7a843a20
Fix argument confusion in format (#1746)
* Fix argument confusion in format

* Bump test cases
2024-09-18 10:15:38 -04:00
dotasek
3d6650399c Merge branch 'master' into do-20240909-package-lock-cleanup 2024-09-18 09:29:46 -04:00
Grahame Grieve
fbfd81532d Merge remote-tracking branch 'origin/master' 2024-09-17 16:18:15 +08:00
Grahame Grieve
11efed6635 Validation of experimental property 2024-09-17 16:16:09 +08:00
dotasek
a05f471c9c Allow injection of lock parameters + correct usage of locked file write 2024-09-13 16:49:46 -04:00
dotasek
f4b54de8ed Merge branch 'master' into do-20240909-package-lock-cleanup 2024-09-13 13:37:40 -04:00
Grahame Grieve
bfed8a15d5
Merge pull request #1744 from hapifhir/2024-09-gg-logical-json
2024 09 gg logical json
2024-09-12 14:07:06 +08:00
Grahame Grieve
07f1981a8c Fix for NPE processing packages 2024-09-12 11:56:04 +08:00
dotasek
42ffbaf5a4 WIP master merges + smarter lockfile tests 2024-09-11 18:05:23 -04:00
dotasek
bc0303535a
Fix for cache init on existing directories (#1743)
* Add tests+fix for cache init on existing directories

* Clear the cache if it is the wrong version

* Link to FHIR spec docs for .index.json
2024-09-11 12:05:17 -04:00
dotasek
f7cf74423c WIP2 More tests on file lock 2024-09-10 17:07:27 -04:00
Lloyd McKenzie
729c2da4c0 Fixed elide spelling 2024-09-10 08:23:26 -06:00
Lloyd McKenzie
fff805e5b7 Made changes as recommended by Grahame and Elliot 2024-09-10 08:07:01 -06:00
dotasek
e001d781b9 WIP tests for lock file cleanup 2024-09-09 17:03:56 -04:00
Grahame Grieve
ffe0ab6414
2024 09 gg vs sql (#1738)
* Fix bug processing value set includes / excludes that are just value sets (no system value)

* fix value set rendering creating wrong references

* Update SQL-On-FHIR implementation for latest cases, and clone test cases to general test care repository

* Fix expression for con-3 properly (fix validation problem on some condition resources)

* FHIRPath: Allow _ in constant names (per FHIRPath spec)

* Fix FHIRPath bug using wrong type on simple elements when checking FHIRPath types

* release notes

* fix sql-on-fhir tests

---------

Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
2024-09-09 12:27:08 -04:00
Grahame Grieve
52668c1c78 fix sql-on-fhir tests 2024-09-09 21:23:42 +08:00
Grahame Grieve
7fc34e509a alter processing of unknown code systems per discussion at ,https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/Don't.20error.20when.20you.20can't.20find.20code.20system and implement unknown-codesystems-cause-errors 2024-09-06 22:18:01 +08:00
Lloyd McKenzie
966798cc2f Missed commits 2024-09-04 22:25:07 -06:00
Grahame Grieve
515bead90d compile fix 2024-09-04 21:59:01 +08:00
Grahame Grieve
96485e6175 updates 2024-09-03 21:27:41 +08:00
dotasek
f783d07c6c Restore deleted method 2024-08-27 14:09:28 -04:00
dotasek
18ff00fcc3
Package Cache Concurrency (#1715)
* WIP on do-20240722-thread-safety

* Try lock downgrading for better performance

* Refactor FilesystemPackageCacheLockManager

* Tidy up spacing.

* Refactor initCacheFolder. Change read lock to stop asking for a write lock

* Clean up version in addPackageToCache

Since we run checkValidVersionString, version will never be null, and can be final. Also, everything else can be final.

* Make an even crash-ier test for the FilesystemPackageManager

* Move read lock starting point to beginning of addPackageToCache

* Code cleanup

* More code cleanup + enhanced test + more locks

* More aggressive testing + bug fixes and lock file creation

* Basic checks and creation for lockfile

* More testing + smarter check for lock file

* Some renaming and code cleanup

* Some more general tests

* Check whole cache write lock (instantiating)

* Fix references to local files

* A little less repetition than that...

* Fix unclosed channel causing windows failure

* Fix file sync issues when writing .index.json files + others

* Add TRUNCATE_EXISTING and WRITE open options (fix overwrite behavior)

* Revert "Add TRUNCATE_EXISTING and WRITE open options (fix overwrite behavior)"

This reverts commit cfed736cd68213a800bcfe9a7a7fba5993105d9e.

* Revert "Fix file sync issues when writing .index.json files + others"

This reverts commit 4daf7feb935519e769aecfd5ec10b7eef5339bd6.

* Some additional test coverage, since I already wrote it.

* Don't build indexes implicitly during reads.

* Woops. Forgot that a directory can disappear via deletion

* Remove larger package

* Clean up code + remove System.out chatter

* Remove long running test (is tested elsewhere) + clean up code
2024-08-27 11:29:41 -04:00
Grahame Grieve
56091f652a
Merge pull request #1722 from hapifhir/do-20240822-redirect-308
Handle 308 redirects
2024-08-27 08:01:39 +08:00
Grahame Grieve
edd5b7a560
Merge pull request #1717 from hapifhir/do-20240816-xslt-external
Move all instantiation of transformerFactory to XMLUtils and set ACCESS_EXTERNAL flags automatically
2024-08-27 08:00:51 +08:00
Grahame Grieve
be52ad2e96
Merge pull request #1721 from hapifhir/2024-08-gg-misc
2024 08 gg misc
2024-08-27 07:58:48 +08:00
Grahame Grieve
829e1599a0 new messages for tx.fhir.org 2024-08-26 22:49:36 +08:00
Grahame Grieve
96090efdf4 suppress spurious logging statement 2024-08-23 21:51:16 +08:00
dotasek
cf1a58e76c Add 307 as well 2024-08-22 17:24:17 -04:00
dotasek
62758b57c5 Smarter test. 2024-08-22 17:09:03 -04:00
dotasek
59f5eeb3c4 Clean up 2024-08-22 15:51:31 -04:00
dotasek
8094d72314 Improved basic SimpleHttpClientTest and add one for redirects 2024-08-22 15:42:18 -04:00
Grahame Grieve
ec23f52c40 Fix test case for fixed up boundary handling in FHIRPath 2024-08-22 08:07:45 +08:00