Commit Graph

1506 Commits

Author SHA1 Message Date
dotasek 461df3031b
Bump jackson-databind (#1600)
* Bump jackson-databind

* Update license whitelist
2024-04-16 13:24:08 -04:00
dotasek bab36025db
Bump nimbus-jose-jwt (#1599) 2024-04-16 11:29:28 -04:00
Grahame Grieve df93da2735 update tests to depend on snapshot 2024-04-10 08:19:15 +10:00
markiantorno 1f3d2838d9 Updating version to: 6.3.5-SNAPSHOT and incrementing test cases dependency. 2024-04-04 01:47:30 +00:00
markiantorno 45e8d86478 Release: v6.3.4
## Validator Changes

* Validate fixed/pattern values are not changed in derived profiles
* Fix NPE validating some profiles
* FHIRPath validation: consider sub-extensions when checking extension($) use
* Fix validation of concept maps containing SCT
* Preserve message id from terminology service so editors can use it to remove hints and warnings

## Other code changes

* Fix ConceptMap.group.target conversion from R3 to R5
* Fix NPE in list renderer
* fix bug showing 'required' instead of 'current' rendering additional bindings
* Fix bad references generating narratives in bundles
* Fix bug showing extension binding twice
* Various improvements to structure map validation to support cross-version mappings
* Add rendering for UsageContext and ContactDetail
* Fix broken link in xver IG for R2
* Fix bug rendering resources in Parameters resource
* Not-pretty xhtml gets line breaks before block tags to keep line length down (work around a jekyll issue)
* Improved ConceptMap rendering for cross-version IG
* Handle xhtml:div type for old FHIR version
* FML: strip '-' from rules names when parsing
* Update FML parsers to accept R5 metadata in R4 FML format
* Break out helper classes for Terminology Service Tester

## Security

* Add start of security notes
* Start moving file access to all go through ManagedFileAccess

## WHO Internationalization work:

* Add library to parse IETF Language definitions
* Move message translations to .po files as the master source & write convertor
* Much work making rendering i18n-able
* i18n for Patient renderer
* Refactor language handling in R5 renderers
***NO_CI***
2024-04-04 00:55:36 +00:00
Grahame Grieve fcd4a9f202 set up release 2024-04-04 11:14:10 +11:00
Grahame Grieve 02b6e80b6d refactor language handling in R5 renderers 2024-03-22 22:49:31 +11:00
markiantorno 0cebf9af9f Updating version to: 6.3.4-SNAPSHOT and incrementing test cases dependency. 2024-03-20 13:31:17 +00:00
markiantorno ec51399045 Release: v6.3.3
## Validator Changes

* Fix grammar in validation messages
* Fix NPE in validator for SIDs
* Duplicate designations in a code system is a warning, not an error
* Fix value set validation to validate codes in example code systems

## Other code changes

* Improved multi-language support for IG development (LanguageUtils)
***NO_CI***
2024-03-20 12:38:29 +00:00
Grahame Grieve b2fefc75e5 set up release 2024-03-20 22:52:09 +11:00
Grahame Grieve 4f1269dcff update test cases dependencies 2024-03-20 21:01:18 +11:00
markiantorno b2e3c261e4 Updating version to: 6.3.3-SNAPSHOT and incrementing test cases dependency. 2024-03-18 15:09:50 +00:00
markiantorno 5b5a0a2cdf Release: v6.3.2
## Validator Changes

* CodeSystem property validation improvements
* More valueset validation improvements after real world testing
* Fix processing of NotSelectable filters using in | not-in
* Fix wrong collection type checking FHIRPath subsetOf parameter type

## Other code changes

* Fix rendering of contained resources in Kindling
* Put jurisdiction in NPM package file
* Rendering improvements for xver IG
* More xver support for concept maps
* Fix NPE in ContextUtilities (kindling)
* Add OID Assigner utility
***NO_CI***
2024-03-18 14:24:12 +00:00
Grahame Grieve 8af7859393 add release notes 2024-03-18 20:13:53 +11:00
dotasek 25267b6096
Bump commons-compress to 1.26.0 (#1570) 2024-03-15 10:25:28 -04:00
Grahame Grieve a058d0ee4d upgrade test case dependency 2024-03-14 16:49:18 +11:00
markiantorno da3bb9e353 Updating version to: 6.3.2-SNAPSHOT and incrementing test cases dependency. 2024-03-10 21:41:17 +00:00
markiantorno 072be957d4 Release: v6.3.1
## Validator Changes

* Add validation for CodeSystem Properties and ValueSet filters
* More validation for Code Systems: contained code systems, supplement cross checks
* Add more validation around ValueSet.compose.include.system - must be a proper URL, and not a direct reference to a supplement
* HL7: Don't require HL7 publishing status on contained resources
* Don't walk into nested bundles when validating links in bundles
* fix up implementation of notSelectable in value set filters
* Add check for multiple version matches for a versionless canonical reference

## Other code changes

* Fix narrative generator generating duplicate anchors (prefix 'hc')
* exclude .DS_Store from generated zip files
* Add cross-version support extension
* Add ConceptMap utilities in support of cross-version module
***NO_CI***
2024-03-10 20:52:29 +00:00
Grahame Grieve a20704de16 update test case dependency for release 2024-03-11 07:01:40 +11:00
Grahame Grieve 7ba1511748 Fix bug where some XHTML elements wrongly serialised concisely 2024-03-01 16:41:32 +11:00
markiantorno 48023c0ba4 Updating version to: 6.3.1-SNAPSHOT and incrementing test cases dependency. 2024-02-28 05:56:31 +00:00
markiantorno b44c34c7e2 Release: v6.3.0
## Validator Changes

* Fix significant bug where validator gets internal child lists incorrect and doesn't do complete validation when switching between validating profiles and resources directly
* Performance improvement for validator parsing - thanks Brian Postlethwaite
* Fix Crash on slicing a sliced element #862
* Fix ig loading from direct URL (#1559)
* Fix bug copying constraints into Bundle.entry.resource profiles
* Fix bug loading R5 extensions with imported value sets
* Replace dom-3 with custom java code, and check xhtml references to contained content
* Improve concept map code validation
* Update observation validator for committee decision not to enforce Blood Pressure profile for Mean Blood Pressure
* Validate value set internal codeSystem references
* Split value set validation into 10k batches for very large extensional value sets
* Hack fix for opd-3
* Fix bug where using ontoserver when not appropriate
* Fix issues with inferSystem
* Don't require HL7 committee for contained resources in HL7 namespace
* Fix where validator was ignoring minimum cardinality for XML attributes (especially in CDA)
* Improved ConceptMap validation
* Updated IG versions used for -cda and -ccda CLI validation options.
* Change validator so that it marks value properties in primitive data types as illegal

## Other code changes

* Fix code system rendering for uri properties
* Fix broken links Bundle and Profile rendering
* Take copy of code when doing local validation
* WIP: major refactor of cross version analysis
* Add support for subsumes in tx client
* Don't generate snapshots when scanning structure definitions for resource names
* Work on ConceptMap infrastructure for cross-version analysis
* Fix bug where not rendering ConceptMap relationships
* Fix wrong URLs rendering Profiles and Questionnaires
* Fix bug using wrong version constant for R3
* Updates for R5 StructureMap syntax
* Support for case sensitive Code system tests
* Add TurtleGeneratorTests for R5
* Introduce new validator cliContext option disableDefaultResourceFetcher (#1526)
* Render contained resources when rendering Patient resources
* Fix bug in FML Parser
***NO_CI***
2024-02-28 05:04:13 +00:00
Grahame Grieve d5d7971917 set up release 2024-02-28 15:23:49 +11:00
Grahame Grieve da56e4296b Change validator so that it marks value properties in primitive data types as illegal 2024-02-28 12:22:33 +11:00
dotasek 70505b1704
Bump sqlite to 3.45.1.0 (#1562) 2024-02-20 10:23:37 -05:00
Grahame Grieve a266540d1d update test case dependency 2024-02-10 23:23:03 +11:00
markiantorno 3a1946e37d Updating version to: 6.2.16-SNAPSHOT and incrementing test cases dependency. 2024-01-30 11:13:01 +00:00
markiantorno 0bb2010409 Release: v6.2.15
## Validator Changes

* Fix bug in deciding whether a ValueSet is supported by the server
* Rework server decision making when multiple code systems being used
* Fix file type inference in ValidationService for unknown file types

## Other code changes

* Kindling related fixes for terminology stability
* Fix parameter type for system-version
* Fix mini-terminology server bugs around unknown systems
* Improvements to Identifier rendering
***NO_CI***
2024-01-30 10:29:12 +00:00
Grahame Grieve cb707e2992 upgrade test cases dependencies 2024-01-30 20:56:27 +11:00
Grahame Grieve ebfd70477c fix mini-terminology server bugs around unknown systems 2024-01-30 19:05:49 +11:00
markiantorno f492c2114a Updating version to: 6.2.15-SNAPSHOT and incrementing test cases dependency. 2024-01-25 17:19:04 +00:00
markiantorno 485bb2a9a7 Release: v6.2.14
## Validator Changes

* no changes

## Other code changes

* Fix text creation on wrong xhtml node type
***NO_CI***
2024-01-25 16:34:27 +00:00
dotasek 7ba2cfa153 Use released test cases 2024-01-24 16:46:06 -05:00
Grahame Grieve 07d81e3a5b
Fix additional bindings html generation issue (#1551)
* Fix additional bindings html generation issue

* Use new test cases snapshot

---------

Co-authored-by: dotasek <dotasek.dev@gmail.com>
2024-01-24 14:47:49 -05:00
markiantorno 4ffe900fb3 Updating version to: 6.2.14-SNAPSHOT and incrementing test cases dependency. 2024-01-19 12:52:04 +00:00
markiantorno bebd1f31c1 Release: v6.2.13
## Validator Changes

* no changes

## Other code changes

* Fix for handling large expansions correctly
***NO_CI***
2024-01-19 12:17:24 +00:00
markiantorno a85b5e74cd Updating version to: 6.2.13-SNAPSHOT and incrementing test cases dependency. 2024-01-19 03:37:05 +00:00
markiantorno 8ff31256fe Release: v6.2.12
## Validator Changes

* Handle terminology server errors better

## Other code changes

* Fix expansion related bugs and adjust tests accordingly
* Update test framework for changes to expansion functionality
* Update presentation of fixed and pattern values in profile views
* Handle toString for XhtmlNode when nodeType == null
***NO_CI***
2024-01-19 02:47:02 +00:00
Grahame Grieve 2102d0301e set up release 2024-01-19 12:56:45 +11:00
Grahame Grieve bf57789467 Fix expansion related bugs and adjust tests accordingly 2024-01-19 10:39:29 +11:00
markiantorno 2156a44395 Updating version to: 6.2.12-SNAPSHOT and incrementing test cases dependency. 2024-01-18 03:15:19 +00:00
markiantorno 4ca3400a86 Release: v6.2.11
## Validator Changes

* Remove debugging code hiding error from server

## Other code changes

* fix broken links rendering questionnaires
* render target profiles on operation definition parameters
* fix up cvx importer
***NO_CI***
2024-01-18 02:26:19 +00:00
Grahame Grieve 1c0e332d05 update test case dependency 2024-01-18 11:47:07 +11:00
markiantorno 0c431880f7 Updating version to: 6.2.11-SNAPSHOT and incrementing test cases dependency. 2024-01-17 16:48:24 +00:00
markiantorno 9c15aff0f3 Release: v6.2.10
## Validator Changes

* Fix issues with multiple terminology servers (should be live soon)
* Rework terminology system & cache to support new terminology server ecosystem
* Handle value set with exclusion filters when expanding
* Fix to consistent error messages when value sets can't be resolved

## Other code changes

* Fix bug processing empty structure maps
* Performance improvements to common IO routines, with test cases - see https://blog.qligier.ch/posts/2024-improving-perf-ig-publisher-io/ (thanks to Quentin Ligier)
***NO_CI***
2024-01-17 15:53:34 +00:00
dotasek 292f2ebae9
Bump test cases tor release meeting 2024-01-17 09:47:56 -05:00
Grahame Grieve f49183b21b bump version 2024-01-17 08:22:58 +11:00
Grahame Grieve c4206ebd11 update test cases 2024-01-17 07:37:11 +11:00
Grahame Grieve 362e7e2600 more work on multiple terminology servers 2024-01-12 09:16:16 +11:00
markiantorno e2ba911f4e Updating version to: 6.2.9-SNAPSHOT and incrementing test cases dependency. 2024-01-10 21:29:35 +00:00
markiantorno a5e0b5a1dd Release: v6.2.8
## Validator Changes

* Major rework of tx and validation test cases associated with reworking terminology / validator interface and ongoing testing + reconciliation with Ontoserver
major upgrade to validation - use terminology server to perform more logic, and standardise interface based on agreements with Vocab & Ontoserver
* Improve slicing error message
* Add warning to user when referencing an extension that doesn't exist in FHIRPath
* Fix bugs in FHIRPath implementation of split() and join()
* Fix bug handling null objects in JSON (R5)
* Fix for missing search parameter definition in R4
* fix bug handling XML name extension
* Fix FHIRPath validation errors around use of %resource and %rootResource
* Correct validator enforcement of minValue for decimal and integer (#1538)

## Other code changes

* Properly populate property definitions in expansions
* Add CVX Importer
* R6 release support
* IPS tool development
* Improved errors publishing IGs
* Refactor Context to support multiple terminology services
* change type of error when value set circularity found
* Track generated side files when rendering resources
* Support for extended Unicode characters in XHTML / XML / JSON / Turtle
***NO_CI***
2024-01-10 21:03:47 +00:00
dotasek c3284c843c
Bump fhir-test-cases to released version 2024-01-10 14:53:05 -05:00
dotasek fc040b9dfc Bump nexus-staging-maven-plugin 2024-01-10 09:27:31 -05:00
Grahame Grieve 073311bbb6 Various fixes to terminology service after reconciliation with Michael Lawley 2023-12-22 21:20:10 +11:00
markiantorno d4d7600635 Updating version to: 6.2.8-SNAPSHOT and incrementing test cases dependency. 2023-12-15 13:00:23 +00:00
markiantorno 6c78cc3e48 Release: v6.2.7
## Validator Changes

* Fix up validation of fragment and example value sets
* Improve handling of terminology messages + handling of example and fragment code systems
* Add support for logical_container extension (for CDA constraint validation)
* Clean up handling of xml_name
* Check for xver extension canonical urls when validating uri elements
* Upgrade xver to latest R5 definitions

## Other code changes

* Fix string index error in xver manager
* Fix rendering of type for previous versions
***NO_CI***
2023-12-15 10:50:47 +00:00
Grahame Grieve 8d2a0348c5 release 2023-12-15 04:58:51 -05:00
Grahame Grieve ca694588b6 test case dependency 2023-12-14 07:21:27 -05:00
markiantorno ceaa131d81 Updating version to: 6.2.7-SNAPSHOT and incrementing test cases dependency. 2023-12-13 19:07:52 +00:00
markiantorno b5902aac98 Release: v6.2.6
## Validator Changes

* Fix bug where validator doesn't actually validate web sourced input
* Fix narrative link validation and add id/idref validation
* Remove fhir-test-cases from Validator CLI JAR (#1497) (reduce size)
* Fix to CDA xsi:type validation per SD decision
* Apply regex pattern to literal format if defined
* Improvements to vital signs related messages
* Fix R4 con-3 FHIRPath expression
* Fix bug loading packages with partially specified version that doesn't exist
* Fix for occasional missing warnings around bundle link validation
* Fix using wrong resource type when validating constraints in data type definitions during R6 build
* Fix NPE in validator processing CCDA examples
* Fix problem with version dependencies when loading npm packages directly as files
* Fix for SearchParameter validation using custom resource types

## Other code changes

* Bump commonmark version
* fix Utilities display of time periods (fixed width hour:min)
* Fix stated path for error when code not in value set
* Fix rendering of trigger definition using tables inside paragraphs
* Update VSAC importer to fix timeout issues
* Refactor FHIRPath java package
* Fix problem with profiled resources being called examples in IG publisher
* Remove dependencies for unused UI experiment (#1465)
* Remove AU connectathon
* Include hamcrest dependency
* Fix breaking ValidationEngineTests
* Give kinder error message for missing param
* Fix commonmark group and bump version (#1500)
* Remove dep used for local testing
* Bump jackson & logback versions
* Fix StringType element properties not being copied in various Address, HumanName convertors
* Handle all initial value types when rendering Questionnaires
* Ensure Address.line[] element data is copied over
* Write locking on FilesystemPackageCacheManager
* Fix problems setting owning committee consistently
* Utility classes for fule system package cache pre-loading
***NO_CI***
2023-12-13 18:41:20 +00:00
Grahame Grieve 8ecf5a1790 upgrade test cases 2023-12-13 13:03:52 -05:00
dotasek 81fef98013
Bump jackson version (#1515)
* Bump jackson version

* Fix license check
2023-12-07 11:01:23 -05:00
dotasek e5688eb8ec
Bump logback in dependencyManagement (#1514) 2023-12-06 17:03:12 -05:00
dependabot[bot] ad9119ff3c
Bump ch.qos.logback:logback-classic from 1.2.3 to 1.2.13 (#1511)
Bumps [ch.qos.logback:logback-classic](https://github.com/qos-ch/logback) from 1.2.3 to 1.2.13.
- [Commits](https://github.com/qos-ch/logback/compare/v_1.2.3...v_1.2.13)

---
updated-dependencies:
- dependency-name: ch.qos.logback:logback-classic
  dependency-type: direct:development
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-06 13:28:34 -05:00
Grahame Grieve 18c4419b9e refactor FHIRPath package 2023-12-01 15:13:33 +11:00
dotasek 37a8373b94
Fix commonmark group and bump version (#1500)
* Fix commonmark group bump version

* Remove dep used for local testing
2023-11-29 14:47:51 -05:00
dotasek 2ea6d44330 Revert "Fix commonmark group bump version"
This reverts commit 5cf89d8202.
2023-11-27 13:14:18 -05:00
dotasek 5cf89d8202 Fix commonmark group bump version 2023-11-27 11:13:31 -05:00
dotasek a04475ea9c Revert "Fix commonmark group bump version"
This reverts commit 6b45c63638.
2023-11-27 11:10:02 -05:00
dotasek 6b45c63638 Fix commonmark group bump version 2023-11-27 11:06:48 -05:00
markiantorno bf426e2d28 Updating version to: 6.2.6-SNAPSHOT and incrementing test cases dependency. 2023-11-24 19:35:02 +00:00
markiantorno 70d3c801d3 Release: v6.2.5
## Validator Changes

* Fix validator not allowing canonical resource extensions in canonical resources in bundles
* Fix bundle validation error on intneral link checking
* Check parameter type for FHIRPath where() and all()
* Validate that composite search parameters have components

## Other code changes

* Refactor timeout control on client
* Support IPS in validation tests
* Remove orphan R4B test
* Improve expansion error messages
* Fix expansion language - don't set for displayName parameter
* Adjust value set rendering for fragment code systems
* Fix NPE rendering some resources
* Fix rendering of TriggerDefinition
* Support parsing ad-hoc json data type fragments
* More memory work for IG Publisher
* Move ILoggingService & VersionUtil
* Fix timeout issue in vsac
* Introduce ips builder + Infrastructure changes for IPS builder
* Move json and xml extensions from extensions pack to tooling ig
* Add support for rendering union and intersections of profiles in profile comparison
* FHIRPath iif() test case fixes
* Add support for IPS validation in test cases
* Fix for broken markdown re-processing
* Improve identifier rendering
* Fix committee URLs
***NO_CI***
2023-11-24 19:08:02 +00:00
Grahame Grieve 59f24b74b4 release 2023-11-25 06:42:35 +13:00
Grahame Grieve f2f10bf27b update test cases 2023-11-17 07:11:24 +11:00
markiantorno 8fe88a320e Updating version to: 6.2.5-SNAPSHOT and incrementing test cases dependency. 2023-11-15 18:56:03 +00:00
markiantorno 29b1cd98dc Release: v6.2.4
## Validator Changes

* Add support for NZ IPS
* Don't fail on erroneously repeating elements, and more bundle link validation
* Rework bundle references validation
* Fix problem creating CDA type discriminators
* Fix bundle resolution rules to conform to the specification in version R4+

## Other code changes

* Fix issue where markdown with multiple characters was being cut off sometimes
* Fix bundle resolution rules to conform to the specification in version R4+
* More work on versioned API
* Fix up VSAC import for large value sets
* Fix FHIRPath cda tests for empty package cache
* Fix problem with R3 expansion
* Add support for CCDA .hasTemplateIdOf(canonical)
* Fix issue where markdown with multiple characters was being cut off sometimes
***NO_CI***
2023-11-15 18:29:25 +00:00
Mark Iantorno bd4bcd63a6 Updating test case dependency to v1.4.17
***NO_CI***
2023-11-15 15:55:58 +00:00
Grahame Grieve 4c6a318749 Fix bundle resolution rules to conform to the specification in version R4+ 2023-11-13 07:38:31 +11:00
markiantorno c128f3b61d Updating version to: 6.2.4-SNAPSHOT and incrementing test cases dependency. 2023-11-11 06:49:45 +00:00
markiantorno 7cb9286e3f Release: v6.2.3
## Validator Changes

* Remove wrong LOINC code for circumference % from vital signs scan
* Remove spurious error when profile discriminators have no value
* Fix as() and ofType() in FHIRPath engine to support type namespaces properly
* Fix problem with FHIRPath engine wrongly checking types in context of CDA
* Fix date validation error in CDA validation
* Update error handling to preserve message ids properly

## Other code changes

* Add rendering of II.system
* Fix extension handling when generating snapshots - which are ignored, overwrite, or add
* Delete some empty java files
* Remove unnecessary snapshot tests
***NO_CI***
2023-11-11 06:24:19 +00:00
Grahame Grieve 6b6a4df426 set up release 2023-11-11 11:49:25 +11:00
Grahame Grieve dc791becaa update error handling to preserve message ids properly 2023-11-09 16:51:15 +11:00
markiantorno c717f898ef Updating version to: 6.2.3-SNAPSHOT and incrementing test cases dependency. 2023-11-07 03:30:21 +00:00
markiantorno 3a7733ea02 Release: v6.2.2
## Validator Changes

* Validate Vital signs Profiles when validating observations
* Hack around problem with vs-1 constraint in R4
* Check for retired status when multiple OID matches exist
* Fix for validating extensions on R5 resources in R4 (R4 special case)
* Minor fixes for standalone ViewDefinition validator

## Other code changes

* Revised Capability Statement rendering (Thanks Vassil Peytchev)
* Fix bug rendering primitive types with an extension that provides a value alternative
* Add links to references when rendering json and xml instances in IG publisher
* Fix bug generating profile spreadsheets
* Support suppress examples when generating snapshots
* VSAC Import improvements
***NO_CI***
2023-11-07 02:46:28 +00:00
Grahame Grieve 0da6f1b28f set up release 2023-11-07 11:11:02 +11:00
Grahame Grieve 35c7e18e55 Validate Vital signs Profiles when validating observations 2023-11-05 09:19:39 +11:00
markiantorno a47dccc7f6 Updating version to: 6.2.2-SNAPSHOT and incrementing test cases dependency. 2023-10-31 16:23:32 +00:00
markiantorno 3c198658e1 Release: v6.2.1
## Validator Changes

* Validate contextInvariant in extension definitions
* fix Typo in TI WG name
* Handle unknown constants properly in FHIRPath
* Fix handling of type ancestors at the root of FHIRPath expressions
* CDA templates with no extension value use urn:oid: not urn:hl7ii:
* Allow URL as a type of string in FHIRPath type checking
* Fix semver validation
* Fix problem resolving context in CDA invariants

## Other code changes

* Finish SQL in FHIR Implementation, but disable sql on fhir tests until package is packaged properly by next release of IG publisher
* Fixes to Search Parameter rendering per FHIR-I decision
* Fix broken links in extension references done by [[[]]]
* Fix broken links in code system rendering of parents
* Support using names in [[[markdown]]] when rendering
* Remove "profile" from tx operations
* Include checkIPSCodes and bundleValidationRules in json
***NO_CI***
2023-10-31 15:51:40 +00:00
dotasek 6fb5b11619 Bump test cases to 1.4.14
***NO_CI***
2023-10-31 10:55:56 -04:00
Grahame Grieve 034b1057e6 CDA templates with no extension value use urn:oid: not urn:hl7ii: 2023-10-28 06:38:16 +11:00
markiantorno b60d9e4f81 Updating version to: 6.2.1-SNAPSHOT and incrementing test cases dependency. 2023-10-24 23:01:44 +00:00
markiantorno 7c3863c6ad Release: v6.2.0
## Validator Changes

* Validation by templateId for CDA
* Fix NPE validating concept maps
* Update ViewDefinition validator for change (alias -> name)
* Fix for NPE validating sql-on-fhir ViewDefinition
* Fix for index out of bounds error when extension uses itself
* Fix issue where .resolve() in FHIRPath didn't work with URL values (and fix typo in i18n system)
* Implement FHIRPath slice() function in validator
* Fix bug where Snapshot generation can run off the end of the differential

## Other code changes

* Breaking API Change: Revise FHIRPath API so hosts can evaluate expressions in custom functions
* Add package use tracking to FHIR cache for validator.fhir.org
* Support for instance-name and instance-description in IG publisher
* Element.removeExtension (support for instance-name and instance-description extensions in IG publisher)
* Split terminology service tests
* Hack for wrong URLs in subscriptions backport
* Remove dependencies for unused UI experiment
* More improvements to profile code generation
***NO_CI***
2023-10-24 22:34:10 +00:00
Grahame Grieve b94d3303ce Bump minor version 2023-10-25 08:16:23 +11:00
dotasek 2732c41d08 Bump test cases to 1.4.13 2023-10-24 16:04:19 -04:00
Grahame Grieve e431770caf
2023 10 gg code gen (#1469)
* Revise FHIRPath API so hosts can evaluate expressions in custom functions

* Implement slice() function in validator

* more improvements to profile generation

* Fix issue where .resolve() in FHIRPath didn't work with URL values (and fix typo in i18n system)

* release notes

* Fix test ignore/exclude issues, bump test cases

---------

Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-10-24 15:26:24 -04:00
Grahame Grieve 1534a5b6eb undo test case upgrade 2023-10-21 06:48:17 +11:00
Grahame Grieve e06fee93c2 release notes 2023-10-21 06:44:08 +11:00
Grahame Grieve 2f8a5a071e validation by templateId for CDA 2023-10-20 21:30:25 +11:00
markiantorno 87b756e0c7 Updating version to: 6.1.17-SNAPSHOT and incrementing test cases dependency. 2023-10-16 22:48:30 +00:00
markiantorno b9338024a6 Release: v6.1.16
## Validator Changes

* Fix bug processing value sets containing URLs

## Other code changes

* Add initial support for http://hl7.org/fhir/tools/StructureDefinition/type-profile-style
* More work on sql-on-fhir implementation
* Allow for type parameter to custom functions in FHIRPath
* Fix bugs in processing current packages for XIG
***NO_CI***
2023-10-16 22:19:52 +00:00
Mark Iantorno 925d481b74 Updating test case dependency to v1.4.11
***NO_CI***
2023-10-16 21:26:31 +00:00
dotasek 5ed1e08e6d
Updates for jdk21 (#1462)
* update byte_buddy and lombok versions

* Update license special cases
2023-10-16 15:51:47 -04:00
Grahame Grieve 08c1aabb9d update to test snapshot 2023-10-16 23:59:15 +11:00
markiantorno a31120f15f Updating version to: 6.1.16-SNAPSHOT and incrementing test cases dependency. 2023-10-13 16:03:08 +00:00
markiantorno 17b7528c0f Release: v6.1.15
## Validator Changes

* Support for CDA code validation

## Other code changes

* Update XML Parser & logical model renderer for XML choice groups
* Restore JSON Parser method for HAPI compatibility.
* Maintain OID to URL lookup index
* Fix json parsing of CDA
***NO_CI***
2023-10-13 15:36:00 +00:00
dotasek 800fc9b721
Update pom.xml 2023-10-13 10:21:25 -04:00
Grahame Grieve 3d039a89eb get tests passing 2023-10-12 21:50:39 +11:00
markiantorno 65161437cb Updating version to: 6.1.15-SNAPSHOT and incrementing test cases dependency. 2023-10-10 10:28:06 +00:00
markiantorno faf0e0684c Release: v6.1.14
## Validator Changes

* Make sure logical models get a snapshot generated

## Other code changes

* Fix URL of concept map extension in version conversion
***NO_CI***
2023-10-10 10:01:13 +00:00
markiantorno 5f96bcd35d Updating version to: 6.1.14-SNAPSHOT and incrementing test cases dependency. 2023-10-09 19:09:40 +00:00
markiantorno 2d5efc33d1 Release: v6.1.13
## Validator Changes

* Improve language on constraint error message + add expression checking for SQL on FHIR project

## Other code changes

* Fix uuid() executing StructureMaps and don't throw errors processing StructureMaps
* Add support for test folder in NPM packages
* Fix rendering of XML Attributes in profiles
* Add support for hosts to manage certificate resolution using ISignatureServices + fix issue matching type names when validating logical models
* Make sure snapshots are generated when fetching types
* Workaround issue where R5 build wrongly adds ele-1 to base
* Fix conversion issue associated with ConceptMap.element.target.equivalence in versions previous to R5 (use proper extension URL, and move extension so it can be a modifier. And fix for modifierExtension handling)
* Fix birthDate editing in CmdLineApp
***NO_CI***
2023-10-09 18:43:48 +00:00
Grahame Grieve 30be57fd81 set up release 2023-10-09 23:29:24 +11:00
Grahame Grieve 97914518fa update test case dependency 2023-10-09 17:47:49 +11:00
markiantorno 9ec1c68cfc Updating version to: 6.1.13-SNAPSHOT and incrementing test cases dependency. 2023-10-05 02:20:25 +00:00
markiantorno d705905c8c Release: v6.1.12
## Validator Changes

* fix CDA parsing error for sdtc:raceCode
* fix xml output to deal with namespaces properly
* fix FHIRPath join implementation to make separator parameter optional

## Other code changes

* Improve rendering for xml_no_order extension
* add command line demo app
* rework xig into 3 steps
* add userData to JSON element
* Initial SQL On FHIR implementation
* Add getDistalNames() to FHIRPath for SQL-on-FHIR support
***NO_CI***
2023-10-05 01:50:02 +00:00
Grahame Grieve 752ab7a3d1
2023 10 gg cda parsing fix 2 (#1451)
* fix xml output to deal with namespaces properly

* Improve rendering or xml_no_order

* add command line demo app

* fix CDA parsing error for sdtc:raceCode

* Fix error message

* Bump test case version

---------

Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
Co-authored-by: dotasek <dotasek.dev@gmail.com>
2023-10-04 18:42:29 -04:00
markiantorno 627e40934b Updating version to: 6.1.12-SNAPSHOT and incrementing test cases dependency. 2023-10-02 13:18:11 +00:00
markiantorno 9b5c26be25 Release: v6.1.11
## Validator Changes

* Fix FHIRPath type resolution for logical models
* Update parsers to record the element format for logical model validation
* fix profile matching for CDA logical models

## Other code changes

* Upgrade PackageVisitor for XIG
***NO_CI***
2023-09-30 18:21:42 +00:00
markiantorno f9b3dbde57 Updating version to: 6.1.11-SNAPSHOT and incrementing test cases dependency. 2023-09-29 11:11:34 +00:00
markiantorno ddd3889268 Release: v6.1.10
## Validator Changes

* Change Mapping type validation error to warning validating maps
* Add support for special case codes in v2 (NNnnn)
* Fix problem parsing logical model cda fragments
* Fix parsing logical model list attributes
* Fix issue parsing parameters in a target expression

## Other code changes

* Handle additional bindings when generating snapshots for R5 profiles
* Fix problem rendering additional bindings in R5
* Fix for new pubpack version
***NO_CI***
2023-09-29 10:45:20 +00:00
Grahame Grieve 1dfc11c519 set up upgrade 2023-09-29 19:32:02 +10:00
markiantorno 90d683907d Updating version to: 6.1.10-SNAPSHOT and incrementing test cases dependency. 2023-09-27 16:01:56 +00:00
markiantorno b276d8a793 Release: v6.1.9
## Validator Changes

* Fix for issue parsing SHC and not recording line/col correctly
* Fix issue validating CDA FHIR Path constraints
* Better error handling validating codes in concept maps
* Validate special resource rules on contained resources and Bundle entries
* Improved error messages of observation bp
* Fix up WG internal model for changes to workgroups
* fix misleading error message inferring system when filters in play
* Fix type handling for logical models (CDA fixes)
* Fix up parsing of logical models
* Fix bug parsing extension with no value in JSON for the validator

## Other code changes

* Major uplift of PEModel to support generated code for profiles in R4 + R5
* Add removeChild in R4/R4B/R5 model
* Fix version conversion issue between r4 and r5 charge definition issue
* Fix rendering extension and missed profile on Reference()
***NO_CI***
2023-09-27 15:35:08 +00:00
Mark Iantorno 0bec4ae913 Updating test case dependency to v1.4.6
***NO_CI***
2023-09-27 14:46:07 +00:00
Grahame Grieve 8ea4fe74c7 upgrade test cases 2023-09-27 05:52:13 +10:00
markiantorno 7d4816f628 Updating version to: 6.1.9-SNAPSHOT and incrementing test cases dependency. 2023-09-21 19:51:51 +00:00
markiantorno 8413995d8b Release: v6.1.8
## Validator Changes

* no changes

## Other code changes

* Fix typo in CodeSystem renderer fixed string
***NO_CI***
2023-09-21 19:24:42 +00:00
Grahame Grieve 0032ce148a Fix build 2023-09-22 04:49:22 +10:00
Grahame Grieve c2017760da mrege 2023-09-21 16:46:26 +10:00
markiantorno 14e6f210e6 Updating version to: 6.1.8-SNAPSHOT and incrementing test cases dependency. 2023-09-21 06:36:25 +00:00
markiantorno 23a0bc3f14 Release: v6.1.7
## Validator Changes

* Significant Performance improvements parsing JSON resources
* Refactor Type handling for faster performance
* Validate the stated publisher/WG/contacts for HL7 published resources
* Better error message when diff contains bad paths
* pass dependent resources to server and make sure cache-id is filled out properly in all contexts
* Fix error in FML parser parsing parameters
* Fix issue with dom-6 and contained elements (Internal ChildMap synchro issues)
* Better handling of errors from tx.fhir.org
* Fix bug checking for implicit value sets
* Fix bug checking of mixing snomed display types
* Reduce size of validatable concept map to 500 - for now + better handling of errors on server batches
* Improve UCUM validation BP rule

## Other code changes

* Fix up handling of includes in liquid templates
* Fix up rendering of profile names for abstract profile instantiations
* Improved rendering of codes in include when rendering valuesets
* Start generating .index.db as well as .index.json in packages for faster package reading
* Fix problem caching look up of implied value sets
* Add okio dependency for running vsac
***NO_CI***
2023-09-21 06:06:01 +00:00
Grahame Grieve cb8754d8be wahtever 2023-09-21 13:51:01 +10:00
Grahame Grieve c03709375f set up release 2023-09-21 12:52:07 +10:00
Grahame Grieve 773647f466
Merge pull request #1439 from hapifhir/do-202309018-sqlite-dependency-mgmt
Move sqlite version to dependency management
2023-09-19 09:59:50 +10:00
dotasek 17521e7184 Move sqlite version to dependency management 2023-09-18 10:27:37 -04:00
Grahame Grieve 4d2868f21e Add support for validating WG info in HL7 resources 2023-09-15 22:01:30 -07:00
markiantorno a68ba66d1a Updating version to: 6.1.7-SNAPSHOT and incrementing test cases dependency. 2023-09-15 22:58:19 +00:00
markiantorno 43e73b1281 Release: v6.1.6
## Validator Changes

* Add R4B binding-definition URL to validator exception list
* Correct validation when CodeSystem.content = example and server doesn't know code system
* Fix bug processing CDA snapshots
* Fix issue evaluating FHIRPath correctness on CDA.Observation
* Improve error message from validator when invariants fail
* Fix NPE validating concept maps
* Add parameter for easy CDA validation
* Suppress wrong invariants on compiler magic types
* fix NPE checking codes

## Other code changes

* Improve CodeSystem rendering - make parent property a link
* Add file tracking when npm package performing file unpacking
* Remove env variables from path builder
* Fix bug in version comparison
* fix for NPE in HAPI
* Performance improvements for IG Publisher
* Start working on cross-version extensions
* Improve rendering of message about logical target
***NO_CI***
2023-09-15 22:32:55 +00:00
Grahame Grieve 56e8ececa2 new test cases release 2023-09-15 14:20:08 -07:00
Grahame Grieve 65ea3ddf95 Merge remote-tracking branch 'origin/master' 2023-09-15 13:13:40 -07:00
Grahame Grieve 906c7dea45 fix bug processing CDA snapshots 2023-09-14 19:29:50 -07:00
markiantorno a8967b378f Updating version to: 6.1.6-SNAPSHOT and incrementing test cases dependency. 2023-09-11 01:26:15 +00:00
markiantorno a09216c6e8 Release: v6.1.5
## Validator Changes

* no changes

## Other code changes

* Add baseUrl and version methods to r5 CanonicalType
***NO_CI***
2023-09-11 01:00:01 +00:00
markiantorno 30ed1bf615 Updating version to: 6.1.5-SNAPSHOT and incrementing test cases dependency. 2023-09-10 01:22:26 +00:00
markiantorno 1c24341056 Release: v6.1.4
## Validator Changes

* Fix bug preventing Best Practice invariants being reported on, and add -best-practice parameter
* Fix issue not validating bundles when there are multiple profiles on entry.resource
* Add Japanese translations

## Other code changes

* Fixes for minor bugs discovered testing the XIG
* fix package program data path
***NO_CI***
2023-09-10 00:51:54 +00:00
dotasek de1f9d7b4e Bump test cases to release
***NO_CI***
2023-09-09 17:22:30 -07:00
Grahame Grieve a061db8f01 Fix issue not validating bundles when there are multiple profiles on entry.resource 2023-09-07 17:07:09 +10:00
markiantorno 980f04557c Updating version to: 6.1.4-SNAPSHOT and incrementing test cases dependency. 2023-09-06 08:22:50 +00:00
markiantorno 6d37127e63 Release: v6.1.3
## Validator Changes

* Test concept map code validity
* Rework type checking on target profiles to support imposesProfile
* Fix imposesProfile extension being missed on primary profile
* Add support for IPS-AU
* Fix warning/error message about experimental property on CodeSystems and ValueSets
* Fix unknown code message to include code system version
* Add provisional SHLinks validation

## Other code changes

* Render Requirements.reference
* Convert Requirements.reference between versions
* Fix test that breaks on local machines + Fix system path for FileSystemPackageCacheManager
* Update to cqframework 2.11 and remove unused common-beanutils declaration (#1419)
* Better xhtml logging for debugging
* Fix DF markdown engine to escape < properly
* Support for sub-packages in packagelist.json
* NPE proofing property handling for Code Systems
* rework the way intermediary content is handled in the validator
* Restore CodeQL regex queries (#1422) + Whitelist BSD 3-clause license
***NO_CI***
2023-09-06 06:12:07 +00:00
Grahame Grieve 59c42838c4 set up release 2023-09-06 15:02:53 +10:00
Grahame Grieve bfac7f06de Add SHLinks validation 2023-09-02 23:21:32 +07:00
markiantorno bca705a3c6 Updating version to: 6.1.3-SNAPSHOT and incrementing test cases dependency. 2023-08-31 13:58:37 +00:00
markiantorno f5e218c279 Release: v6.1.2
## Validator Changes

* FHIRPath fixes checking types discovered testing R6 build

## Other code changes

* Fix rendering of impose-profile extension
* Improvements to performance tracking code
* get FHIRFormat from SHC code
***NO_CI***
2023-08-31 13:29:31 +00:00
Grahame Grieve 4b02ccccb8 fix test case version 2023-08-31 14:59:14 +02:00
Grahame Grieve e9721ad5a0 set up release 2023-08-31 14:27:35 +02:00
Grahame Grieve 4bba1c2cde fix bugs in FHIRPath checking and track special time when validating resources 2023-08-31 06:30:29 +02:00
markiantorno 9048983155 Updating version to: 6.1.2-SNAPSHOT and incrementing test cases dependency. 2023-08-29 08:56:09 +00:00
markiantorno 2f6c61af78 Release: v6.1.1
## Validator Changes

* Fix problem validating code systems with content = not-present
* Further development of multi-language support on the tx server, and:
* Change the validator so that the default language is '*' (all languages) not 'en'

## Other code changes

* Improve license scanning and readme documentation
* Change xpp3 dependency
* Add client version to tx user-agent requests
* Suppress spurious xml parsing messages to System.err
***NO_CI***
2023-08-29 08:27:41 +00:00
Grahame Grieve 49dc240bba update test cases 2023-08-29 08:05:19 +02:00
dotasek 490e57fa7c Swap out xpp3 dependency 2023-08-23 15:51:44 -04:00
markiantorno fb64a720c8 Updating version to: 6.1.1-SNAPSHOT and incrementing test cases dependency. 2023-08-22 17:26:57 +00:00
markiantorno e90863a271 Release: v6.1.0
## Validator Changes

* Performance fix: Delay loading content when loading IGs
* CodeSystem validation around count and content
* Add checking around internal status consistency and across dependencies (draft/experimental/retired/deprecated)
* Improved error messages on server failure
* Fix bug in warning about No valid Display Names found
* Use Supplements when validating display names
* Fix issue in FHIRPath .combine focus handling
* Check Extension fixed values for URLs - enforce consistency
* Fix R4 FML parser problem
* Track and report inactive status when reported from terminology server
* Add defense against large terminology operations causing obscure java errors
* Fix bug with client sending too much data to tx.fhir.org (big performance hit in some cases)
* Fix obscure bug with designations in a more specific language the the code system they are in

## Other code changes

* Significant upgrade of version comparison for profiles/extensions, value sets, and code systems, and integration into rendering framework
* Many minor changes to terminology functionality (reconciliation with differences with OntoServer) including service protection
  * Rename implySystem parameter to inferSystem per TI decision
  * rework how definitions are handled after discussion with Michael
  * add flat mode to tests for Ontoserver, and add experimental functionality
* fix rendering issue in subscription topic
* Add a renderer for ExampleScenario
* Automatically render markdown in code system concept definitions
* Fix loading issues in test mode for simplifier packages
* Remove spurious logging in FHIRPath engine
* Fix addChild error in PEBuilder (#1343) + Add test case
* CPT Importer
* Dependencies fixed/updated: okhttp, thymeleaf, commonmark & UCUM
* Xhtml fluent improvements + related XHtmlNode improvements
* Release new pubpack for new icons
* Json Object comparison: fix bug in arrays with multiple optional elements + improved error messages + support for external strings
* fix cross-version extensions web references where possible
* Don't suppress exceptions in terminology clients
* Add first cut of Profile Generation code
* Stop putting invalid codes in expansions if they are not in the code system
***NO_CI***
2023-08-22 17:01:34 +00:00
dotasek 1b33d2a537 Bump minor version 2023-08-22 11:56:22 -04:00
dotasek 05fdc08758 Bump test cases to 1.3.26
***NO_CI***
2023-08-22 09:37:44 -04:00
dotasek 9303aa7673 Bump to release version 2023-08-21 13:22:17 -04:00
dotasek 62225652b6 Bump ucum + version fix build 2023-08-21 11:21:45 -04:00
dotasek 9ae060b5d9 Bump ucum version 2023-08-21 09:32:52 -04:00
Grahame Grieve 1711abc322
Merge branch 'master' into do-20230815-bump-okhttp-dependencies 2023-08-16 09:10:47 +10:00
dotasek dacc73a114 Bump okhttp dependency, exclude vulnerable transitives 2023-08-15 12:52:01 -04:00
dotasek b438e8cd64 Move thymeleaf version to dependencyManagement 2023-08-15 11:27:50 -04:00
Grahame Grieve abcad6db38 update tests dependency 2023-08-08 19:59:34 +10:00
markiantorno 9c3a6a7f37 Updating version to: 6.0.26-SNAPSHOT and incrementing test cases dependency. 2023-08-04 17:55:11 +00:00
markiantorno bc3f348108 Release: v6.0.25
## Validator Changes

* Fix problem with evaluating extension contexts
* Fix up support for inactive codes and fix error message syntax
* Fix issue with collection status of resolve() being wrong
* Improved paths in profile error messages
* Fix problem with extension slicing being missed sometimes.
* Fix problem with code validation caching ignoring whitespace
* Produce useful error message when whitespace is wrong in display name
* Support for x-version extensions when generating snapshots

## Other code changes

* Render inactive property in expansions
* Resolve URL for x-version extensions
* Don't warn for loading a wrong version package more than once
* Do not supercede R4 terminology when loading R5 IGs
* Migrate type support when generating differentials
***NO_CI***
2023-08-04 17:27:42 +00:00
dotasek b968aae1b0 Bump to fhir-test-cases 1.3.25 2023-08-04 11:50:12 -04:00
Grahame Grieve 6d0883468b
2023 08 gg extension paths (#1380)
* fix problem with whitespace in terminology caching

* Support for x-version extensions when generating snapshots

* Fix problem with evaluating extension contexts

* Produce useful error message when whitespace is wrong in display name

* Resolve URL for x-version extensions

* render inactive property in expansions

* fix tests

* ping build

* Point to correct test-cases version

---------

Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-08-03 16:12:48 -04:00
markiantorno 011167a218 Updating version to: 6.0.25-SNAPSHOT and incrementing test cases dependency. 2023-08-02 23:28:12 +00:00
markiantorno 42274a7bd3 Release: v6.0.24
## Validator Changes

* Create warnings for status on terminology resources
* Don't load resources from core examples package

## Other code changes

* fix up copy directory for case differences
***NO_CI***
2023-08-02 23:02:37 +00:00
Mark Iantorno 6950dba75b Updating test case dependency to v1.3.24
***NO_CI***
2023-08-02 21:58:57 +00:00
dotasek 176b1df3c4
Bump test cases to 1.3.24-SNAPSHOT 2023-08-02 14:53:35 -04:00
dotasek 921ed912ff
Add OWASP suppression (#1377) 2023-08-01 14:03:40 -04:00
Mark Iantorno c458da999a Updating test case dependency to v1.3.22
***NO_CI***
2023-08-01 14:33:16 +00:00
Grahame Grieve c58703c63f Improved invariant checking 2023-07-29 08:49:27 +10:00
markiantorno 0165495626 Updating version to: 6.0.24-SNAPSHOT and incrementing test cases dependency. 2023-07-27 14:23:16 +00:00
markiantorno db5d2b07c3 Release: v6.0.23
## Validator Changes

* Update IPS versions for -ips parameter (and get it working again)
* fix up validation of constraints in differentials (wasn't always happening)
* add warnings when collection status isn't right
* Better information messages when CodeSystem.content = not-present
* Add character check in validator for illegal XML Unicode characters
* Fix path problem in NpmPackage (some simplifier packages couldn't be processed)
* Fix NPE validating codes in value sets with improper expansions

## Other code changes

* Add support for Liquid assign
* Switch to DateTime type for Android Support
* Code clean up: remove unused imports
* Fix JSON unicode encoding handling of chars <32 code points
***NO_CI***
2023-07-27 13:56:32 +00:00
Grahame Grieve a12a939f90 set up release 2023-07-27 22:34:50 +10:00
Grahame Grieve 8568765e6d get tests passing 2023-07-26 07:38:34 +10:00
Mark Iantorno 27cbcc4e1f Updating test case dependency to v1.3.17
***NO_CI***
2023-07-25 14:36:38 +00:00
markiantorno 592fba54cc Updating version to: 6.0.23-SNAPSHOT and incrementing test cases dependency. 2023-07-22 17:06:10 +00:00
markiantorno b7fd3be910 Release: v6.0.22
## Validator Changes

* Add support for private NPM registries requiring authentication
* Don't check FHIRPaths on differentials - not enough type info to test reliably
* Fix bugs in FHIRPath handling of logical models
* Fix minor bugs in type handling for Logical Models and R3 Profile validation
* Remove spurious warning message validating CDA documents
* Add value set qa checking
* Fixes to validator for new CDA package (proper handling of logical model types)
* Fix up bi-di warning message
* Add provisional support for alternate codes
* Workaround ClinicalImpression definition problem in core spec
* Fix to get context variables right when running invariants + fix for parent not always being populated + check type in derived profiles
* Fix checking FHIRPath statements on inner elements of type slices
* Fix scan of naming systems (error validating namespaces)
* Fix issue checking invariant expressions in R5

## Other code changes

* FHIRPath in HAPI mode: Strip returned IIdType of qualifier, version, and resourceType
* Update R4 and R4B FHIRPath implementations for changes picked up in R5 usage
* Fix obligation rendering message
* Fix missing extensions when converting value set properties
* Fix type of x-unknown-code-system in $validate-code response
* Fix CDA validation test case
* Much work on TxServer test case framework + Update terminology server implementation and tests for changes to test cases
* OMOP Vocabulary and ICFImporter development
* Add OWASP dependency check (#1347), upgrade many packages, remove ShEx
* Add github action to upload results
* Remove unused javalin dependency, also generate html reports
* Added test case for ExampleScenario conversion (R4/R5) and significantly bulked up the conversion process
* Remove unneeded resources (#1346) (help16.png)
* Add test for setVsAsUrl parameter setting (#1345)
***NO_CI***
2023-07-22 16:41:19 +00:00
Mark Iantorno b73111adf6 Updating test case dependency to v1.3.15
***NO_CI***
2023-07-22 14:57:26 +00:00
dotasek d95af6d968
Bump databind to 2.15.2 (#1354) 2023-07-18 11:47:06 -04:00
dotasek 89d0f6f867
Remove weso shex (#1352)
* Bump shex dependency

* Bump jackson to 2.15.2

* Bump thymeleaf to 3.1.1.RELEASE

* Remove es.weso shexs_2.12 and ignored tests
2023-07-17 18:20:53 -04:00
dotasek c2cb2aaa21
Add OWASP dependency check (#1347)
* Add owasp dependency scan

* Add github action to upload results

* Remove unused javalin dependency, also generate html reports

* formats instead of format

* Restore javalin dependency (make revert easier later if necessary)

* Set OWASP to run on PR plus better names for sarif upload
2023-07-14 10:56:40 -04:00
Grahame Grieve c174400e73 fix scan of naming systems 2023-07-08 22:08:36 +10:00
markiantorno 6a187a9232 Updating version to: 6.0.22-SNAPSHOT and incrementing test cases dependency. 2023-07-07 12:36:19 +00:00
markiantorno 45ae02cf1d Release: v6.0.21
## Validator Changes

* Fix up processing conditions in -watch mode
* Fixes for validating against logical models (for fixed up CDA core package)
* Better testing of extension context (when limited to profile)
* Fix handling of UCUM codes when no terminology server
* Report hints and warnings on some code validation that had been not reported
* Better validation of valuesets when checking derived profiles

## Other code changes

* Render reference identifier if there is one when rendering references
* Hide empty place holder column when rendering by profile
* Fix npe rendering extensions + improve base64 presentation
* OMOP terminology importer
* update SPDX code system in R4/R4B for support for not-open-source
* Fix up type handling for conversions between R4/R4B and R5 (OperationDefinition fix)
***NO_CI***
2023-07-07 12:10:05 +00:00
Grahame Grieve d6fdaeb308 set up release 2023-07-07 14:50:10 +10:00
Grahame Grieve 9a48340b6c render reference identifier if there is one 2023-07-07 05:01:16 +10:00
markiantorno 6db701767a Updating version to: 6.0.21-SNAPSHOT and incrementing test cases dependency. 2023-06-30 23:19:08 +00:00
markiantorno 6a6c425562 Release: v6.0.20
## Validator Changes

* no changes

## Other code changes

 * Fix for SPDR not-open-source in code
 * fix name and title in VSAC import process
 * More work on Android support + fix issues in NPM package installation that caused
***NO_CI***
2023-06-30 22:52:51 +00:00