* WIP start moving FhirRequestBuilder to ManagedWebAccess
* Update PECodeGenerator.java
* WIP keep moving FhirRequestBuilder to ManagedWebAccess + fix some tests
* WIP move logging, retry, timeout and proxy
* WIP move accept to parameter
* WIP some HTTP Header refactoring, rename FhirRequest to HTTPRequest
* WIP fix removed import
* Tidy up code
***NO_CI***
* Fix for renamed class
* Change mem settings for build
* Adjust pipeline mem again
* Apply changes to r4b
* Actually add headers from HTTPRequest to OkHttp request
* Use ManagedFhirWebAccess in r4
* Removing leftover okttp usage
* Remove unused classes and okhttp usages and add tests for r4
* Make dstu3 use ManagedFhirWebAccess
* Make sure we get response headers
* Add test coverage (some failing) for DSTU2 ClientUtils
* Add FHIRToolingClient tests
* Use ManagedFhirWebAccess for DSTU2
* WIP restore format header tests - turns out they break
* Fix format header issues
* Switch to static fhirBuilder for all FhirRequestBuilders
+ Fix null user agent issue
+ Load ManagedWebAccess from FHIR settings
+ Add terminology servers to FhirSettings
* fix slicing by type and profile to allow multiple options per slice
* List measure choices when a match by version can't be found
* Validate fhirpath expression in slice discriminators
* Remove conflicting authorization header setting methods
* fix VSAC importer for changes to ManagedWebAccess
* Tests 1
* Rename ...AccessBuilder classes to ...Accessor
* Fix api-key token mixup, more tests
* Resolve all deletions enclosed in FIXME + fix headers in dstu2 postfeed
* More TODO erasures. Plus found missing functionality
* Move tests to utilities. Clarify missing functionality
* Clean up comments and JavaDoc
* Final rename
* update vsac access code
* Fix get bytes for -1 or chunked content
---------
Co-authored-by: Jens Kristian Villadsen <jenskristianvilladsen@gmail.com>
Co-authored-by: Grahame Grieve <grahameg@gmail.com>
Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
## Validator Changes
* Improve warning messages about collections in SQL ViewDefinitions
* Fix type evaluation of .item() in FHIRPath
* Revise message about unknown usage context on additional binding
* Add support for code generation
* Add check for # in CanonicalResource.version
* Fix problem parsing urls in cds-hooks formats
* Fix issues with output folder running tx tests
* Fix bug evaluating resolve() in contained resources when doing slicing
## Other code changes
* Fix NPE processing markdown
* Capture missing snapshot generation messages
* Track OID status
* Improve rendering of coded values
* update tests for changes to PE code generation
* Tx Tests: Add support for special header on specific tests
* Tx Tests: Fix framework to handle diagnostics correctly
* Tx Tests: check http code in tx test cases
* Add support for NCI code rendering
* Adding missing lombok annotation (cannot build without it from scratch) (#1785)
* Remove Encounter Renderer
* Profile code generation fixes
* Add r4 code gen classes
* Draft work for tx server authentication (not landed yet)
* Move XXE safe SAXParserFactory and XMLReader instantiation to XMLUtil
* Bump commons-compress version
***NO_CI***
## Validator Changes
* Fix validation issue with open-choice questions in R4 questionnaires
* Add command line parameter ```-tx-routing```
* Add command line parameter ```-clear-tx-cache```
* Add command line parameter ```-advisor-file```
## Other code changes
* Render extensions on some data types
* Fix rendering of complex data types when doing profile rendering
***NO_CI***
## Validator Changes
* Don't send expansion to tx server if there's a compose when sending value sets
* Better handling of error messages from terminology servers
* Stop hitting VSAC server directly
## Other code changes
* Add support for $id$ in terminology tests
* Move new documentbuilderfactory calls to XMLUtils (Security)
***NO_CI***
## Validator Changes
* Show message ids in validator (-show-message--ids)
* Fix bug where message id not showing for slicing messages
* Add advisor documentation (not yet functional)
* Fix issue checking package currency for #current packages
* Add warning when code system is marked complete but has no content
* Fix bug processing adding discriminators in derived profiles
* Break valueset concept validation into multiple smaller batches for performance reasons
## Other code changes
* More work on translations in IGs
* Override inheritance of HAPI's old maven-compiler-plugin
* do not use loadPackageFromCacheOnly from outside cache manager
* Fix issues with rendering example scenario
* refactor sql view validation to fix NPE
* Fix misc warnings flagged by builds (#1772) + TRIVY typo
* Bump codeql actions to v3
* Bump checkout action to v4
* Bump commons.io to 2.14.0 (#1771)
* Workaround for ghcr rate limiting of trivy db downloads (#1770)
* Add VSACfinder (template for package analysis)
* Fix github urls
* Spelling fixes
***NO_CI***
* Override inheritance of HAPI's old maven-compiler-plugin
and stop using deprecated forceJavacCompilerUse
* Take checkstyle plugin out of default build
* Use less for initial JVM opts (maybe forked compilers will need this)
* Try on a mac?
* Report free space, add MAVEN_OPTS
* No MAVEN_OPTS?
* Back to ubuntu
* Try some compiler args and max mem
* Try some MaxRamPercentage on surefire too
* Try 75.0 MaxRamPercentage
* 60?
* Update surefire version, even less Xmx
* Revert I18nBase style fix (get tests to pass, apply later)
* Now that memory is less of an issue, try checkstyle again
* Fix missing single quote
* Try 50% of 7G for Xmx
## Validator Changes
* Validator supports R6 from now on (using last stable release)
* Set default language to tag not display
* Handle tx server issues better
* Do not use server piecemeal when validating complex value sets
* Add support for -txCache parameter
## Other code changes
* Add support for R6 to R4 version enumeration
* Fix SCT link to include version and point to the right place
* Add response time to tx log
* Allow for code to turn off use of cache-id on tx interface (for debugging)
* Support n/a for tx cache folder
* Update tx cache for tests
* Add more logging for too costly validation
* Fix xml annotation suppression
***NO_CI***
## Validator Changes
* Work around problem with language value set being marked experimental
* Fix validation id/idref to resolve in document if in a document
* Fix various issues rendering and validating additional bindings with usage contexts
* Upgrade lock management in Package Cache
## Other code changes
* Fix case typo on Consent.provision in R4
* Fix R3 Quantity.copyValues()
* Remove debugging code
* Add more debugging to validation failure
* Add support for active only to VSAC importer
* Add r4b support to Package Version Generation
* Fix argument confusion in format in time validation
* Added support for tracking whether elements are ellipsed and for rendering accordingly
***NO_CI***
## Validator Changes
* Validate of experimental property on bindings
* Add -no-experimental-content flag
* Allow JSON named extensions to be structure types other than logical
* Process relative URLs properly in base when generating snapshots
## Other code changes
* Fix rendering path for value set references for kindling
* refactor error handling in ProfileUtilities
* Fix for NPE processing packages
***NO_CI***
Grahame Grieve
Grahame Grieve
dotasek
dotasek
mrunibe
markiantorno
Alfonso
Elliot Silver
Alexander Henket