2414 Commits

Author SHA1 Message Date
Grahame Grieve
de3ec0d27b fix npe + render OperationDefinition parameter standards status 2023-02-14 12:34:19 +11:00
Grahame Grieve
d9f98902b9 fix npe 2023-02-14 11:01:59 +11:00
Grahame Grieve
d5d83bea9c fix broken links in R5 builds 2023-02-14 09:53:22 +11:00
Jim Balhoff
d67470a6e1 Add MeSH triples. 2023-02-13 14:24:49 -05:00
Grahame Grieve
4ae0dfe8f4 rendering fixes 2023-02-13 20:29:56 +11:00
Grahame Grieve
ccb5004766 fix issues with URL regex 2023-02-13 11:07:11 +11:00
Jim Balhoff
a72ccaa0ed Merge branch 'rdf-wg-r5' into rdf-wg-r5-with-generated 2023-02-10 12:43:35 -05:00
Jim Balhoff
a547458274 Update loinc namespace. 2023-02-10 12:43:15 -05:00
Grahame Grieve
bd424e7b60 fixes after more testing 2023-02-10 16:18:33 +11:00
Grahame Grieve
11c887edc5 FHIR-34417: implementations for comparable(), highBoundary(), lowBoundary() 2023-02-10 10:02:40 +11:00
Jim Balhoff
92cae24b1b Add generated RdfParser code. 2023-02-08 14:09:01 -05:00
markiantorno
97604fdff5 Updating version to: 5.6.98-SNAPSHOT and incrementing test cases dependency. 2023-02-07 12:55:19 +00:00
markiantorno
c91376f3b9 Release: v5.6.97
## Validator Changes

* no changes

## Other code changes

* Fix for Extensions moving in R5
***NO_CI***
2023-02-07 12:28:44 +00:00
Grahame Grieve
ba731b0051 Fix R5 loading problem 2023-02-07 09:53:51 +10:00
markiantorno
eec7c33e63 Updating version to: 5.6.97-SNAPSHOT and incrementing test cases dependency. 2023-02-05 21:04:53 +00:00
markiantorno
729e7afb33 Release: v5.6.96
## Validator Changes

* no changes

## Other code changes

* Fix bug with duplicate value in getResourceNames()
***NO_CI***
2023-02-05 20:42:24 +00:00
Grahame Grieve
1d4f1e9d90 fix bug with duplicate value in getResourceNames() 2023-02-06 05:38:02 +11:00
markiantorno
b3cebe7bc6 Updating version to: 5.6.96-SNAPSHOT and incrementing test cases dependency. 2023-02-03 20:09:35 +00:00
markiantorno
1696b56b50 Release: v5.6.95
## Validator Changes

* Fixes for FHIRPath as() operator in r4 and r5

## Other code changes

* no changes
***NO_CI***
2023-02-03 19:45:12 +00:00
Grahame Grieve
ea9333b322
Gg 202302 fhirpath as (#1102)
* fix type of issue source extension

* update extension extractor

* FHIRPath changes for as - case and singleton issues

* minor fixes for extension rendering

* Update test cases version

---------

Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-02-03 13:14:51 -05:00
markiantorno
ea41a8b6a6 Updating version to: 5.6.95-SNAPSHOT and incrementing test cases dependency. 2023-02-02 17:07:22 +00:00
markiantorno
67329e20ad Release: v5.6.94
## Validator Changes

* no changes

## Other code changes

* Test release
***NO_CI***
2023-02-02 16:34:58 +00:00
Jim Balhoff
d596a6c343 Use leading underscore for properties with objects with modifier extensions. 2023-02-01 19:49:24 -05:00
Jim Balhoff
12bf57886f For resources with a modifierExtension, use a leading underscore for the rdf:type. 2023-02-01 13:05:47 -05:00
markiantorno
e922cc2a97 Updating version to: 5.6.94-SNAPSHOT and incrementing test cases dependency. 2023-02-01 07:27:59 +00:00
markiantorno
4e97bb0d5a Release: v5.6.93
## Validator Changes

* Fix for NPE rendering resources
* Consider CanonicalResource to be a CanonicalResource when validating profile references
* Work around error in R5 sdf-29 invariant

## Other code changes

* XHTML processing: Cater for "." in XML element and attribute names
* Handle R3 encoding of primitive values when validating profiles
* Improve error messaging when validating StructureDefinition
* Temporary Support for MedicationStatement in R5
* Work around for Identifier.use = ? in THO R5 package (old error)
* Rework Package API to allow for authentication on package servers
* Structure mapping now finds source Structure Definition by URI and sets ParserBase logical property appropriately.
* DOn't convert ig-r4 when converting package versions
***NO_CI***
2023-02-01 07:02:20 +00:00
Grahame Grieve
4a79e89f62 Merge remote-tracking branch 'origin/master' 2023-02-01 14:49:19 +11:00
Grahame Grieve
2cc8ff5e23 extension related validation fixes 2023-02-01 14:49:14 +11:00
Neelima Karipineni
61e63b128a
Enhancements to StructureMap transform to support logical models as source and value set lookup (#1092)
* implement resolveValueSet from AHDIS Matchbox

* get SD from map source type, set logical model

* test for getSourceResourceFromStructureMap DefinitionException

* test resolveValueSet

* test transform logical source

* fix formatting
2023-01-31 16:56:02 -05:00
Jim Balhoff
69ce2b45f2 Output lists in examples using RDF lists. Don’t output fhir:index. 2023-01-31 14:11:29 -05:00
Grahame Grieve
7ad4bd62c6 fix for NPE rendering resources 2023-01-31 07:23:12 +11:00
Grahame Grieve
d859e0b4bd Temporary Support for MedicationStatement in R5 (going to be renamed again) 2023-01-31 07:22:33 +11:00
Jim Balhoff
890971d110 Output type triples for value[x] nodes. Use simple property names. 2023-01-27 17:35:36 -05:00
Jim Balhoff
00d1ab3517 Use fhir:v for literal values in examples. 2023-01-22 19:14:49 -05:00
Jim Balhoff
b7576dee79 Don’t output ontology import declaration in examples. 2023-01-22 19:14:08 -05:00
markiantorno
cb441456a8 Updating version to: 5.6.93-SNAPSHOT and incrementing test cases dependency. 2023-01-20 23:14:26 +00:00
markiantorno
dc677cad51 Release: v5.6.92
## Validator Changes

* update FHIRPath implementation for corrections to 'as' (R5 only in validator)
* Critical Security fix: enforce correct paths when unpacking archives (SecurityAdvisory-1082, CVE TBA)

## Other code changes

* Update to latest FHIRPath for older versions
* Add new ElementModel based parser for StructureMaps
* go-publish related changes
* FTP Client upload and logging improvements
* Refactor base64 handling for Android compatibility

## Security Note

The validator unzips archive files to the local file system when
it is scanning zip files it has been asked to validate, and when it is
installing packages. These processes are now resistant to the zip-slip
vulnerability.
***NO_CI***
2023-01-20 22:57:29 +00:00
dotasek
b50aec5912
Advisory fix 1 (#1089)
* Update cache and comparison downloads to use https

* Zip Slip tests and fix

* Zip Slip tests 2 and fix

* Add missing tempDir child in ScannerTest

* Add win format zip test

* Add tests to r4b

* Add tests and fixes for slips in tgz processing

* Update fhir-test-cases version
2023-01-20 16:56:57 -05:00
Grahame Grieve
2c93585bb6 better error message 2023-01-21 07:36:09 +11:00
Grahame Grieve
f8e6371e1f
Merge branch 'master' into gg-202301-sm-errors 2023-01-20 19:44:24 +11:00
Grahame Grieve
b16fc37b02 clean up error handling when parsing structure maps 2023-01-20 04:24:42 +11:00
dotasek
f58b7acfb5
Swaps isBase64 with internal implementation for Android compatibility (#1079)
* Adding animal sniffer to display all issues related to android compatibility.

* Duplicate isBase64 internally

Co-authored-by: Vitor Pamplona <vitor@vitorpamplona.com>
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-01-18 18:40:24 -05:00
Grahame Grieve
7cc01ef7db update new FHIRPath for older versions 2023-01-19 07:57:05 +11:00
Grahame Grieve
26027fa3d6 update FHIRPath implementation for discussion at 84a07a6a92 2023-01-19 06:59:45 +11:00
Grahame Grieve
d7071312ba
Merge pull request #1080 from hapifhir/gg-202301-sm-em-parser
Add ElementModel based StructureMap parser
2023-01-18 20:07:52 +11:00
Grahame Grieve
4f2fd817a3 Merge remote-tracking branch 'origin/master' 2023-01-18 12:33:59 +11:00
Grahame Grieve
c9833f94d3 Add ElementModel based StructureMap parser 2023-01-18 12:32:06 +11:00
markiantorno
4367813a2c Updating version to: 5.6.92-SNAPSHOT and incrementing test cases dependency. 2023-01-17 21:59:38 +00:00
markiantorno
7b22d0355b Release: v5.6.91
## Validator Changes

* Fixed validation of URNs
* Check profiles don't have slicing on roof

## Other code changes

* Fix significant performance issue with profile xls generation
* Fix issue with setProperty dropping extensions in R3 - R5
* Debug logging improvements generating snapshots
* Fix issues with types missing in CDA IGs
* Fix problem converting ActivityDefinition R4(B)/R5
* More work on FTP Client
***NO_CI***
2023-01-17 21:40:28 +00:00
Grahame Grieve
7b99037199 fix BOM in java files 2023-01-17 12:49:14 +11:00