Commit Graph

893 Commits

Author SHA1 Message Date
markiantorno 54d239a38a Updating version to: 6.4.1-SNAPSHOT and incrementing test cases dependency. 2024-10-24 14:15:50 +00:00
markiantorno 26c445c8fc Release: v6.4.0
## Validator Changes

* Improve warning messages about collections in SQL ViewDefinitions
* Fix type evaluation of .item() in FHIRPath
* Revise message about unknown usage context on additional binding
* Add support for code generation
* Add check for # in CanonicalResource.version
* Fix problem parsing urls in cds-hooks formats
* Fix issues with output folder running tx tests
* Fix bug evaluating resolve() in contained resources when doing slicing

## Other code changes

* Fix NPE processing markdown
* Capture missing snapshot generation messages
* Track OID status
* Improve rendering of coded values
* update tests for changes to PE code generation
* Tx Tests: Add support for special header on specific tests
* Tx Tests: Fix framework to handle diagnostics correctly
* Tx Tests: check http code in tx test cases
* Add support for NCI code rendering
* Adding missing lombok annotation (cannot build without it from scratch) (#1785)
* Remove Encounter Renderer
* Profile code generation fixes
* Add r4 code gen classes
* Draft work for tx server authentication (not landed yet)
* Move XXE safe SAXParserFactory and XMLReader instantiation to XMLUtil
* Bump commons-compress version
***NO_CI***
2024-10-24 13:30:23 +00:00
Grahame Grieve d652aa2f30 Fix NPE processing markdown 2024-10-23 22:19:08 +10:30
markiantorno cabee9a341 Updating version to: 6.3.33-SNAPSHOT and incrementing test cases dependency. 2024-10-14 06:03:42 +00:00
markiantorno 54bf319161 Release: v6.3.32
## Validator Changes

* Fix validation issue with open-choice questions in R4 questionnaires
* Add command line parameter ```-tx-routing```
* Add command line parameter ```-clear-tx-cache```
* Add command line parameter ```-advisor-file```

## Other code changes

* Render extensions on some data types
* Fix rendering of complex data types when doing profile rendering
***NO_CI***
2024-10-14 05:18:21 +00:00
markiantorno a7e216e2c3 Updating version to: 6.3.32-SNAPSHOT and incrementing test cases dependency. 2024-10-10 14:35:11 +00:00
markiantorno 0388bd0835 Release: v6.3.31
## Validator Changes

* Don't send expansion to tx server if there's a compose when sending value sets
* Better handling of error messages from terminology servers
* Stop hitting VSAC server directly

## Other code changes

* Add support for $id$ in terminology tests
* Move new documentbuilderfactory calls to XMLUtils (Security)
***NO_CI***
2024-10-10 13:54:40 +00:00
markiantorno c030740d9e Updating version to: 6.3.31-SNAPSHOT and incrementing test cases dependency. 2024-10-08 15:52:36 +00:00
markiantorno ad0af19fb3 Release: v6.3.30
## Validator Changes

* Show message ids in validator (-show-message--ids)
* Fix bug where message id not showing for slicing messages
* Add advisor documentation (not yet functional)
* Fix issue checking package currency for #current packages
* Add warning when code system is marked complete but has no content
* Fix bug processing adding discriminators in derived profiles
* Break valueset concept validation into multiple smaller batches for performance reasons

## Other code changes

* More work on translations in IGs
* Override inheritance of HAPI's old maven-compiler-plugin
* do not use loadPackageFromCacheOnly from outside cache manager
* Fix issues with rendering example scenario
* refactor sql view validation to fix NPE
* Fix misc warnings flagged by builds (#1772) + TRIVY typo
* Bump codeql actions to v3
* Bump checkout action to v4
* Bump commons.io to 2.14.0 (#1771)
* Workaround for ghcr rate limiting of trivy db downloads (#1770)
* Add VSACfinder (template for package analysis)
* Fix github urls
* Spelling fixes
***NO_CI***
2024-10-08 15:04:29 +00:00
markiantorno e8a0bba072 Updating version to: 6.3.30-SNAPSHOT and incrementing test cases dependency. 2024-09-26 12:30:18 +00:00
markiantorno 53ec745184 Release: v6.3.29
## Validator Changes

* remove spurious logging statement

## Other code changes

* no changes
***NO_CI***
2024-09-26 11:44:41 +00:00
markiantorno 8358354d2f Updating version to: 6.3.29-SNAPSHOT and incrementing test cases dependency. 2024-09-25 21:46:09 +00:00
markiantorno 569fe4b697 Release: v6.3.28
## Validator Changes

* Validator supports R6 from now on (using last stable release)
* Set default language to tag not display
* Handle tx server issues better
* Do not use server piecemeal when validating complex value sets
* Add support for -txCache parameter

## Other code changes

* Add support for R6 to R4 version enumeration
* Fix SCT link to include version and point to the right place
* Add response time to tx log
* Allow for code to turn off use of cache-id on tx interface (for debugging)
* Support n/a for tx cache folder
* Update tx cache for tests
* Add more logging for too costly validation
* Fix xml annotation suppression
***NO_CI***
2024-09-25 21:01:00 +00:00
markiantorno be8944ab94 Updating version to: 6.3.28-SNAPSHOT and incrementing test cases dependency. 2024-09-22 18:36:30 +00:00
markiantorno 102e755283 Release: v6.3.27
## Validator Changes

* Work around problem with language value set being marked experimental
* Fix validation id/idref to resolve in document if in a document
* Fix various issues rendering and validating additional bindings with usage contexts
* Upgrade lock management in Package Cache

## Other code changes

* Fix case typo on Consent.provision in R4
* Fix R3 Quantity.copyValues()
* Remove debugging code
* Add more debugging to validation failure
* Add support for active only to VSAC importer
* Add r4b support to Package Version Generation
* Fix argument confusion in format in time validation
* Added support for tracking whether elements are ellipsed and for rendering accordingly
***NO_CI***
2024-09-22 17:51:33 +00:00
markiantorno f3bd5b9be8 Updating version to: 6.3.27-SNAPSHOT and incrementing test cases dependency. 2024-09-17 22:00:24 +00:00
markiantorno 46affee48f Release: v6.3.26
## Validator Changes

* Validate of experimental property on bindings
* Add -no-experimental-content flag
* Allow JSON named extensions to be structure types other than logical
* Process relative URLs properly in base when generating snapshots

## Other code changes

* Fix rendering path for value set references for kindling
* refactor error handling in ProfileUtilities
* Fix for NPE processing packages
***NO_CI***
2024-09-17 21:09:53 +00:00
markiantorno 4af3deff26 Updating version to: 6.3.26-SNAPSHOT and incrementing test cases dependency. 2024-09-11 18:28:22 +00:00
markiantorno f09bc48f7d Release: v6.3.25
## Validator Changes

* no changes

## Other code changes

* Fix logic for cache clearing on package cache initialization
***NO_CI***
2024-09-11 17:40:08 +00:00
markiantorno 2c8122a42e Updating version to: 6.3.25-SNAPSHOT and incrementing test cases dependency. 2024-09-09 19:09:24 +00:00
markiantorno 813f8200a2 Release: v6.3.24
## Validator Changes

* Fix expression for con-3 properly (fix validation problem on some condition resources)
* Fix FHIRPath bug using wrong type on simple elements when checking FHIRPath types
* FHIRPath: Allow _ in constant names (per FHIRPath spec)
* Fix value set rendering creating wrong references
* Fix bug processing value set includes / excludes that are just value sets (no system value)
* Alter processing of unknown code systems per discussion at ,https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/Don't.20error.20when.20you.20can't.20find.20code.20system and implement unknown-codesystems-cause-errors
* Improve message for when elements are out of order in profile differentials

## Other code changes

* fix problem where profile rendering had spurious 'slices for' nodes everywhere
* Update SQL-On-FHIR implementation for latest cases, and clone test cases to general test care repository
* Fix problem generating value set spreadsheets
* fix concurrent modification error processing language translations
* Check for null fetcher processing ConceptMaps (#1728)
***NO_CI***
2024-09-09 18:23:37 +00:00
markiantorno 19c8b17575 Updating version to: 6.3.24-SNAPSHOT and incrementing test cases dependency. 2024-08-28 18:45:30 +00:00
markiantorno 2721ebb8c6 Release: v6.3.23
## Validator Changes

* no changes

## Other code changes

* Set fhir-test-cases to release 1.5.20
***NO_CI***
2024-08-28 17:59:21 +00:00
markiantorno 1e5cb4da49 Updating version to: 6.3.23-SNAPSHOT and incrementing test cases dependency. 2024-08-27 21:23:55 +00:00
markiantorno 0bdba83faf Release: v6.3.22
## Validator Changes

* no changes

## Other code changes

* BugFix: Restore loadFromFolder method in FilesystemPackageCacheManager
***NO_CI***
2024-08-27 20:30:39 +00:00
markiantorno c172df802d Updating version to: 6.3.22-SNAPSHOT and incrementing test cases dependency. 2024-08-27 17:54:17 +00:00
markiantorno c92ee550c0 Release: v6.3.21
## Validator Changes

* Security Fix: Move all instantiation of transformerFactory to XMLUtils and set ACCESS_EXTERNAL flags automatically (slightly improvement to output message, but closes possible attack vector)
* Handle 308 redirects when fetching packages
* Fix NPE in ValueSetValidator
* Fix for NPE in IGLoader
* fix version conversion problem for ConceptMap (4<->5): relationship comment getting lost for noMap entries
* Add check for multiple WG extensions (HL7 context)

## Other code changes

* Suppress spurious logging statement
* Add Australian CDA name prefix & uri to mapping transform code
* Add new messages for tx.fhir.org
* Remove narrative from snapshot tests
* Improve complex extension rendering when rendering by profile
* Rewrite processing of map statements when generating snapshots to fix known bugs
* Updates to Capability Statement rendering (and minor Operation Definition rendering improvement)
* Fix wrong reference to CDA classes for unscoped class names
* fix rendering issue for R4 relationship codes in ConceptMap
* rework decimal lowBoundary() and highBoundary() after discussion on Zulip, and add extensive testing
* Fix existing test case for fixed up boundary handling in FHIRPath
* Add CodeSystem fetching for selected code systems for VSAC import
* Drop to saxon 11.6 for now
* fix issue with json unicode whitespace enscaping
* get Java generator running again (though no code regenerated)
* don't escape unicode whitespace in json files
* Fix NPE in questionnaire renderer
* Hack workaround for R4 issue with ProcessPriority
* Rewrite concurrency management for file system package cache
***NO_CI***
2024-08-27 16:42:13 +00:00
markiantorno fe2a8e6d11 Updating version to: 6.3.21-SNAPSHOT and incrementing test cases dependency. 2024-08-13 17:31:22 +00:00
markiantorno 1800948c7a Release: v6.3.20
## Validator Changes

* Improved handling of display validation for various languages
* fix xml:space message after discussion on Zulip

## Other code changes

* ValueSet rendering improvements
* Add isUnknownLocalReferencesNotLinks to RenderingContext
* Fix up conceptMap rendering (remove spurious summary table)
* Add R6 ballot 2 to FHIRVersion enum in R5
* rendering fixes for implementers
* improve rendering of bindings with no value sets
***NO_CI***
2024-08-13 16:46:00 +00:00
markiantorno e6e4efa540 Updating version to: 6.3.20-SNAPSHOT and incrementing test cases dependency. 2024-08-04 15:24:42 +00:00
markiantorno aac96cf897 Release: v6.3.19
## Validator Changes

* Improve performance of supplement processing
* Add support for validating xml:space
* Fix NPE validating maps
* Fix duplicate removal code that caused missed WARNING messages (#1698)
* Fix interaction between terminology cache and validation location  (#1700)
* Better concept map validation
* Improved base64 parsing error
* Add support for unknown code system version validating concept maps
* Fix bug using wrong profile when profiling recursive properties

## Other code changes

* Return null for all toCode enum params that are null
* fix bugs adding publishing WG in element mode
* Fix equality method that caused missed WARNING messages
* fix rendering issues
  * rendering fixes for R6 build
  * don't throw error for wrong rendering mode
  * Document rendering fixes - subject and section
  * more work on forcing valid html generation
  * more hyperlink validation improvements
  * further fixes to link validation
  * fix list inside paragraph
  * fix actor capabilities in wrong place
  * Support missing datatypes
  * Fill out missing anchors
  * Fix wrong handling of contained resources)
  * #1678 - add div to children when exploring Narrative
***NO_CI***
2024-08-04 14:35:44 +00:00
markiantorno 0b10290f0f Updating version to: 6.3.19-SNAPSHOT and incrementing test cases dependency. 2024-07-17 06:14:05 +00:00
markiantorno 5c3953cfdb Release: v6.3.18
## Validator Changes

* No Changes

## Other code changes

* Naming System fix for THO
* Fix issue with rendering OperationOutcomes that don't have 'detail'
* Fix problem with value set anchor generation when rendering
***NO_CI***
2024-07-17 05:22:26 +00:00
markiantorno 0722d728ae Updating version to: 6.3.18-SNAPSHOT and incrementing test cases dependency. 2024-07-16 18:20:14 +00:00
markiantorno cf2b25eb29 Release: v6.3.17
## Validator Changes

* work around THO 6.0.0 problem (hack, to be reversed later)
* Improve MeasureReport validation for checking subject count
* Fix for R2B Resource.id cardinality problem
* Fix for validator using wrong property for list determination when parsing json

## Other code changes

* no changes
***NO_CI***
2024-07-16 17:32:26 +00:00
markiantorno a09c712c87 Updating version to: 6.3.17-SNAPSHOT and incrementing test cases dependency. 2024-07-12 12:35:11 +00:00
markiantorno 26c6878c76 Release: v6.3.16
## Validator Changes

* Add clearer message for errors around unable to validate because unknown code system
* Fix problem with fhirVersion cardinality validating IG resources

## WHO I18n Project

* Remove Questionnaire.item.linkId from translatable content

## Other code changes

* Further revisions to rendering framework for id uniqueness, main spec rendering, and various reported issues
* Improve doco for R4/R4B renderers
* Introduce backwards compatible constructor in ValidationEngineBuilder and fix useEcosystem
* Use v2 of PublishCodeCoverageResults (#1665)
* #1583 do not serialize choice group + add testcase
***NO_CI***
2024-07-12 11:48:05 +00:00
markiantorno 115074ee60 Updating version to: 6.3.16-SNAPSHOT and incrementing test cases dependency. 2024-07-05 12:51:24 +00:00
markiantorno 409b0df34d Release: v6.3.15
## Validator Changes

* no changes

## Other code changes

* Fix broken link to definitions in profiles
***NO_CI***
2024-07-05 12:03:07 +00:00
markiantorno 59d0334e0e Updating version to: 6.3.15-SNAPSHOT and incrementing test cases dependency. 2024-07-04 03:22:56 +00:00
markiantorno 50ce6bb6ac Release: v6.3.14
## Validator Changes

* Add support for ND-JSON. Note that the validator is not expected to perform well on large ND-JSON files (or any other file type)
* Significant change: the validator was not checking for the end of the input when parsing a JSON resource finished. It will now start giving errors when JSON continues once the object is complete
* Add support for the create object syntax in FML when validating FML
* Improved error message when supplement url used instead of code system URL

## WHO Translation Project

* Add complete dutch translations (Thanks Alexander Henket)

## Other code changes

* Fix various rendering problems leading to non-unique html anchors
* Fix for unrendered data types
***NO_CI***
2024-07-04 02:33:38 +00:00
markiantorno 70ed025741 Updating version to: 6.3.14-SNAPSHOT and incrementing test cases dependency. 2024-06-28 01:14:27 +00:00
markiantorno b3628c7ccd Release: v6.3.13
## Validator Changes

* no changes

## Other code changes

* Rendering fixes
***NO_CI***
2024-06-28 00:27:59 +00:00
markiantorno 0736de9c2d Updating version to: 6.3.13-SNAPSHOT and incrementing test cases dependency. 2024-06-27 00:47:09 +00:00
markiantorno f14f2a42ad Release: v6.3.12
## Validator Changes

* Change how count is calculated when expanding value sets
* Fix value set expansion bugs
* Fix for fhirpath issue on command line (#1650)
* Add IG dependency validator
* work around bad r4 extension definitions
* don't reload different sub-version of extensions pack

## Other code changes

* Rework rendering library from ground up
  * Merge Fix: Fix split logic of canonical into url and version in several places (#1663)
  * Suppress spurious message when code system is unknown
  * don't raise needless and wrong exceptions about extension definitions when rendering
  * fix duplicate link creation
  * Stop recursive rendering crash
  * Obligation rendering improvements
* Handle extra profiles on resources in an IG when converting between versions
* Fixed issue with actor title not rendering in obligations
* Test and adaption for dateOp #1655
* Use assertj instead of hamcrest (#1662)
* More transifex work
* Add support for local packages during testing
***NO_CI***
2024-06-27 00:00:09 +00:00
markiantorno 03ea625a7c Updating version to: 6.3.12-SNAPSHOT and incrementing test cases dependency. 2024-06-07 03:25:47 +00:00
markiantorno 6ba8b38fc5 Release: v6.3.11
## Validator Changes

* Find value sets on tx server if not tx.fhir.org
* Do not send Content-Type header with GET requests for tx servers
* Fix npe validating code system
* Support discriminator by position
* Don't check type characteristics for unknown types

## WHO I18n Project

* Fix typos in phrases, and fix up handling of apostrophes in messages without parameters
* Test and fix for single quote escapes in I18n
* Create and test transifex configuration

## Rendering Changes

* Fix contact rendering to work properly
* Fix issue resolving contained resource rendering DiagnosticReports etc
* Handle case where Contact.value has extensions instead of a string value
* Render Parameterised types
* Fix bug with LOINC Code row showing wrongly in Profile Details view
* Partial implementation of type parameters
* Fixed rendering of actor-specific obligations, added elementIds to obligation narrative rendering
* Corrected ObligationsRenderer to handle multiple actors and multiple codes.  Also got obligations with elements to render properly (which means knowing whether you're on a table page or definitions page, what tab you're on, and whether the element for the obligation is in-scope for that tab (so you know whether to hyperlink or not).  Had to make links on the tables point to definitions because table anchors are not unique.

## Other code changes

* split out Base.canHavePrimitiveValue() from Base.hasPrimitiveValue()
* Refactor how observation profiles are registered in order to generalise management of extra profiles
  * Use validation policy to implement Observation profile rules
  * Rework validation policy management in standalone validator
* Try deploying javadoc with SNAPSHOT
* Add utility to unpack the spec.internals file
* v2 in FHIR tests
* Fix bug loading language pack NPMs
***NO_CI***
2024-06-07 02:33:16 +00:00
dotasek 93037baa9b Go back to SNAPSHOT
***NO_CI***
2024-06-06 21:58:57 -04:00
markiantorno d36d030076 Release: v6.3.11
## Validator Changes

* Find value sets on tx server if not tx.fhir.org
* Do not send Content-Type header with GET requests for tx servers
* Fix npe validating code system
* Support discriminator by position
* Don't check type characteristics for unknown types

## WHO I18n Project

* Fix typos in phrases, and fix up handling of apostrophes in messages without parameters
* Test and fix for single quote escapes in I18n
* Create and test transifex configuration

## Rendering Changes

* Fix contact rendering to work properly
* Fix issue resolving contained resource rendering DiagnosticReports etc
* Handle case where Contact.value has extensions instead of a string value
* Render Parameterised types
* Fix bug with LOINC Code row showing wrongly in Profile Details view
* Partial implementation of type parameters
* Fixed rendering of actor-specific obligations, added elementIds to obligation narrative rendering
* Corrected ObligationsRenderer to handle multiple actors and multiple codes.  Also got obligations with elements to render properly (which means knowing whether you're on a table page or definitions page, what tab you're on, and whether the element for the obligation is in-scope for that tab (so you know whether to hyperlink or not).  Had to make links on the tables point to definitions because table anchors are not unique.

## Other code changes

* split out Base.canHavePrimitiveValue() from Base.hasPrimitiveValue()
* Refactor how observation profiles are registered in order to generalise management of extra profiles
  * Use validation policy to implement Observation profile rules
  * Rework validation policy management in standalone validator
* Try deploying javadoc with SNAPSHOT
* Add utility to unpack the spec.internals file
* v2 in FHIR tests
* Fix bug loading language pack NPMs
***NO_CI***
2024-06-06 22:46:44 +00:00
markiantorno a32e28e4e3 Updating version to: 6.3.11-SNAPSHOT and incrementing test cases dependency. 2024-05-25 23:37:56 +00:00