Commit Graph

3577 Commits

Author SHA1 Message Date
Grahame Grieve 57926073bc Add support for $id$ in terminology tests 2024-10-09 23:10:35 +08:00
Grahame Grieve 447400daf9 Stop hitting VSAC server directly 2024-10-09 23:10:22 +08:00
Grahame Grieve cacce9b05e fix up processing of server responses 2024-10-09 23:10:09 +08:00
dotasek 7ede053a5f Move new documentbuilderfactory calls to XMLUtils 2024-10-09 09:26:41 -04:00
markiantorno c030740d9e Updating version to: 6.3.31-SNAPSHOT and incrementing test cases dependency. 2024-10-08 15:52:36 +00:00
markiantorno ad0af19fb3 Release: v6.3.30
## Validator Changes

* Show message ids in validator (-show-message--ids)
* Fix bug where message id not showing for slicing messages
* Add advisor documentation (not yet functional)
* Fix issue checking package currency for #current packages
* Add warning when code system is marked complete but has no content
* Fix bug processing adding discriminators in derived profiles
* Break valueset concept validation into multiple smaller batches for performance reasons

## Other code changes

* More work on translations in IGs
* Override inheritance of HAPI's old maven-compiler-plugin
* do not use loadPackageFromCacheOnly from outside cache manager
* Fix issues with rendering example scenario
* refactor sql view validation to fix NPE
* Fix misc warnings flagged by builds (#1772) + TRIVY typo
* Bump codeql actions to v3
* Bump checkout action to v4
* Bump commons.io to 2.14.0 (#1771)
* Workaround for ghcr rate limiting of trivy db downloads (#1770)
* Add VSACfinder (template for package analysis)
* Fix github urls
* Spelling fixes
***NO_CI***
2024-10-08 15:04:29 +00:00
Grahame Grieve bfe4fdd572 release notes 2024-10-08 17:39:33 +08:00
Grahame Grieve 10d854f242 (rename fields) 2024-10-08 05:55:52 +08:00
Grahame Grieve 6123909533 refactor sql view validation to fix NPE 2024-10-08 05:44:02 +08:00
dotasek 6439a2a732
Fix misc warnings flagged by builds (#1772) 2024-10-07 17:16:21 -04:00
Grahame Grieve cd7e579f5e
Merge pull request #1768 from hapifhir/2024-10-gg-validation-fixes
2024 10 gg validation fixes
2024-10-06 18:30:24 +08:00
Grahame Grieve c0875464a3
Merge pull request #1752 from ahdis/oe_1748
FHIR-46548: where clause on alias #1748
2024-10-06 18:00:26 +08:00
Grahame Grieve 001b132231
Merge pull request #1764 from hapifhir/FixElideIssue
Fix for issue identified in
2024-10-06 17:54:35 +08:00
Grahame Grieve 88d0cc8a68 fix issues with rendering example scenario 2024-10-06 15:22:26 +08:00
Grahame Grieve 0a03628e97 more work on translations in IGs 2024-10-05 06:40:51 +08:00
Lloyd McKenzie 17ac205210 Fix for issue identified https://chat.fhir.org/#narrow/stream/196008-ig-publishing-requirements/topic/Embedding.20fragments.20of.20examples.20in.20IG.20text 2024-10-02 22:40:13 -06:00
Grahame Grieve ae7b962d29 Fix bug processing modified differentials 2024-09-30 08:31:57 +10:00
markiantorno e8a0bba072 Updating version to: 6.3.30-SNAPSHOT and incrementing test cases dependency. 2024-09-26 12:30:18 +00:00
markiantorno 53ec745184 Release: v6.3.29
## Validator Changes

* remove spurious logging statement

## Other code changes

* no changes
***NO_CI***
2024-09-26 11:44:41 +00:00
Grahame Grieve 7bd5d3b7ce Merge remote-tracking branch 'origin/master' 2024-09-26 07:08:52 -04:00
Grahame Grieve bd53f7c011 remove spurious logging statement 2024-09-26 07:08:47 -04:00
markiantorno 8358354d2f Updating version to: 6.3.29-SNAPSHOT and incrementing test cases dependency. 2024-09-25 21:46:09 +00:00
markiantorno 569fe4b697 Release: v6.3.28
## Validator Changes

* Validator supports R6 from now on (using last stable release)
* Set default language to tag not display
* Handle tx server issues better
* Do not use server piecemeal when validating complex value sets
* Add support for -txCache parameter

## Other code changes

* Add support for R6 to R4 version enumeration
* Fix SCT link to include version and point to the right place
* Add response time to tx log
* Allow for code to turn off use of cache-id on tx interface (for debugging)
* Support n/a for tx cache folder
* Update tx cache for tests
* Add more logging for too costly validation
* Fix xml annotation suppression
***NO_CI***
2024-09-25 21:01:00 +00:00
Grahame Grieve fc5c54bcc2 fix npe in test case 2024-09-25 13:03:39 -04:00
Grahame Grieve 213d8f25f8 fix npe 2024-09-25 12:17:46 -04:00
Grahame Grieve 8595178336 fix for NPE 2024-09-25 10:21:57 -04:00
Grahame Grieve e38f40b0de fix xml annotation suppression 2024-09-25 10:08:58 -04:00
Grahame Grieve 7b0cf668ae Improved logging + fix failing test 2024-09-25 10:08:38 -04:00
Grahame Grieve 54353f8fce Add more logging for too costly validation 2024-09-25 05:15:49 -04:00
Grahame Grieve 176b0caf63 Do not use server piecemeal when validating complex value sets 2024-09-24 20:42:19 -04:00
Grahame Grieve cdaf85bf0b support n/a for tx cache folder 2024-09-24 20:34:23 -04:00
Grahame Grieve b05d4b35ea Handle tx server issue 2024-09-24 20:33:55 -04:00
Grahame Grieve 7479862a30 Allow for code to turn off use of cache-id on tx interface (for debugging) 2024-09-24 20:25:32 -04:00
Grahame Grieve a1f014730e Add response time to tx log 2024-09-24 20:25:02 -04:00
Grahame Grieve 98373c1fd5 Fix SCT link to include version and point to the right place 2024-09-23 09:12:01 -04:00
Grahame Grieve f868576840 Add support for R6 to R4 version enumeration 2024-09-23 09:11:46 -04:00
markiantorno be8944ab94 Updating version to: 6.3.28-SNAPSHOT and incrementing test cases dependency. 2024-09-22 18:36:30 +00:00
markiantorno 102e755283 Release: v6.3.27
## Validator Changes

* Work around problem with language value set being marked experimental
* Fix validation id/idref to resolve in document if in a document
* Fix various issues rendering and validating additional bindings with usage contexts
* Upgrade lock management in Package Cache

## Other code changes

* Fix case typo on Consent.provision in R4
* Fix R3 Quantity.copyValues()
* Remove debugging code
* Add more debugging to validation failure
* Add support for active only to VSAC importer
* Add r4b support to Package Version Generation
* Fix argument confusion in format in time validation
* Added support for tracking whether elements are ellipsed and for rendering accordingly
***NO_CI***
2024-09-22 17:51:33 +00:00
Grahame Grieve c143f7adff bug fix on snapshot generation after testing 2024-09-22 11:24:30 -04:00
Grahame Grieve 6314ad61bb
Merge pull request #1729 from hapifhir/EllipseSupport
Added support for tracking whether elements are ellipsed and for rend…
2024-09-22 08:51:39 -04:00
Grahame Grieve 5466595215 Work around problem with language value set being marked experimental 2024-09-22 06:41:38 -04:00
Grahame Grieve fedf7e9e6d Add more debugging to validation failure 2024-09-22 06:39:28 -04:00
oliveregger 2f165863e7 fix test, revert var patch 2024-09-21 18:50:01 +02:00
Grahame Grieve 8cfcbf389e Fix various issues rendering and validating additional bindings with usage contexts 2024-09-21 00:35:01 -04:00
oliveregger d69a8e3e43 FHIR-46548: where clause on alias #1748 2024-09-18 23:09:24 +02:00
markiantorno f3bd5b9be8 Updating version to: 6.3.27-SNAPSHOT and incrementing test cases dependency. 2024-09-17 22:00:24 +00:00
markiantorno 46affee48f Release: v6.3.26
## Validator Changes

* Validate of experimental property on bindings
* Add -no-experimental-content flag
* Allow JSON named extensions to be structure types other than logical
* Process relative URLs properly in base when generating snapshots

## Other code changes

* Fix rendering path for value set references for kindling
* refactor error handling in ProfileUtilities
* Fix for NPE processing packages
***NO_CI***
2024-09-17 21:09:53 +00:00
Grahame Grieve fbfd81532d Merge remote-tracking branch 'origin/master' 2024-09-17 16:18:15 +08:00
Grahame Grieve 0d8c5942e7 Fix rendering path for value set references for kindling 2024-09-17 14:11:13 +08:00
Grahame Grieve 9dae4118ae refactor error handling in ProfileUtilities 2024-09-14 08:26:07 +08:00
Grahame Grieve bfed8a15d5
Merge pull request #1744 from hapifhir/2024-09-gg-logical-json
2024 09 gg logical json
2024-09-12 14:07:06 +08:00
Grahame Grieve 07f1981a8c Fix for NPE processing packages 2024-09-12 11:56:04 +08:00
Grahame Grieve 8056dced3e Allow JSON named extensions to be structure types other than logical 2024-09-12 11:55:24 +08:00
Grahame Grieve 337aaf80cf Process relative URLs properly in base when generating snapshots 2024-09-12 11:54:40 +08:00
markiantorno 4af3deff26 Updating version to: 6.3.26-SNAPSHOT and incrementing test cases dependency. 2024-09-11 18:28:22 +00:00
markiantorno f09bc48f7d Release: v6.3.25
## Validator Changes

* no changes

## Other code changes

* Fix logic for cache clearing on package cache initialization
***NO_CI***
2024-09-11 17:40:08 +00:00
Lloyd McKenzie 729c2da4c0 Fixed elide spelling 2024-09-10 08:23:26 -06:00
Lloyd McKenzie fff805e5b7 Made changes as recommended by Grahame and Elliot 2024-09-10 08:07:01 -06:00
markiantorno 2c8122a42e Updating version to: 6.3.25-SNAPSHOT and incrementing test cases dependency. 2024-09-09 19:09:24 +00:00
markiantorno 813f8200a2 Release: v6.3.24
## Validator Changes

* Fix expression for con-3 properly (fix validation problem on some condition resources)
* Fix FHIRPath bug using wrong type on simple elements when checking FHIRPath types
* FHIRPath: Allow _ in constant names (per FHIRPath spec)
* Fix value set rendering creating wrong references
* Fix bug processing value set includes / excludes that are just value sets (no system value)
* Alter processing of unknown code systems per discussion at ,https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/Don't.20error.20when.20you.20can't.20find.20code.20system and implement unknown-codesystems-cause-errors
* Improve message for when elements are out of order in profile differentials

## Other code changes

* fix problem where profile rendering had spurious 'slices for' nodes everywhere
* Update SQL-On-FHIR implementation for latest cases, and clone test cases to general test care repository
* Fix problem generating value set spreadsheets
* fix concurrent modification error processing language translations
* Check for null fetcher processing ConceptMaps (#1728)
***NO_CI***
2024-09-09 18:23:37 +00:00
Grahame Grieve ffe0ab6414
2024 09 gg vs sql (#1738)
* Fix bug processing value set includes / excludes that are just value sets (no system value)

* fix value set rendering creating wrong references

* Update SQL-On-FHIR implementation for latest cases, and clone test cases to general test care repository

* Fix expression for con-3 properly (fix validation problem on some condition resources)

* FHIRPath: Allow _ in constant names (per FHIRPath spec)

* Fix FHIRPath bug using wrong type on simple elements when checking FHIRPath types

* release notes

* fix sql-on-fhir tests

---------

Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
2024-09-09 12:27:08 -04:00
Grahame Grieve 9f9e9dfb8a Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2024-09-06 22:18:06 +08:00
Grahame Grieve 7fc34e509a alter processing of unknown code systems per discussion at ,https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/Don't.20error.20when.20you.20can't.20find.20code.20system and implement unknown-codesystems-cause-errors 2024-09-06 22:18:01 +08:00
Grahame Grieve 6165b154e1
Merge branch 'master' into test_language_concurrency_bug 2024-09-05 04:29:58 +08:00
Grahame Grieve 4603b3ac3c compile fix 2024-09-04 23:25:28 +08:00
Grahame Grieve 515bead90d compile fix 2024-09-04 21:59:01 +08:00
Gjergj Sheldija 51ad87c715 PR comment 2024-09-04 08:16:03 +02:00
Gjergj Sheldija 973ab9e56f possible fix 2024-09-03 15:41:58 +02:00
Grahame Grieve 63ab904401 fix problem where profile rendering had spurious 'slices for' nodes everywhere 2024-09-03 21:27:28 +08:00
Grahame Grieve 7e5014c6d7 Fix problem generating value set spreadsheets 2024-09-03 21:26:53 +08:00
Grahame Grieve 83daa93fbc fix concurrent modification error processing language translations 2024-09-03 21:26:35 +08:00
Grahame Grieve 00f4f0998f Improve message for when elements are out of order 2024-09-03 21:26:17 +08:00
Gjergj Sheldija 8e908da1ab unit tests to check the concurrency bug 2024-09-03 13:50:54 +02:00
Lloyd McKenzie 975653e07d Added support for tracking whether elements are ellipsed and for rendering XHTML versions of XML and JSON content with ellipsed elements 2024-08-29 21:17:20 -06:00
markiantorno 19c8b17575 Updating version to: 6.3.24-SNAPSHOT and incrementing test cases dependency. 2024-08-28 18:45:30 +00:00
markiantorno 2721ebb8c6 Release: v6.3.23
## Validator Changes

* no changes

## Other code changes

* Set fhir-test-cases to release 1.5.20
***NO_CI***
2024-08-28 17:59:21 +00:00
markiantorno 1e5cb4da49 Updating version to: 6.3.23-SNAPSHOT and incrementing test cases dependency. 2024-08-27 21:23:55 +00:00
markiantorno 0bdba83faf Release: v6.3.22
## Validator Changes

* no changes

## Other code changes

* BugFix: Restore loadFromFolder method in FilesystemPackageCacheManager
***NO_CI***
2024-08-27 20:30:39 +00:00
markiantorno c172df802d Updating version to: 6.3.22-SNAPSHOT and incrementing test cases dependency. 2024-08-27 17:54:17 +00:00
markiantorno c92ee550c0 Release: v6.3.21
## Validator Changes

* Security Fix: Move all instantiation of transformerFactory to XMLUtils and set ACCESS_EXTERNAL flags automatically (slightly improvement to output message, but closes possible attack vector)
* Handle 308 redirects when fetching packages
* Fix NPE in ValueSetValidator
* Fix for NPE in IGLoader
* fix version conversion problem for ConceptMap (4<->5): relationship comment getting lost for noMap entries
* Add check for multiple WG extensions (HL7 context)

## Other code changes

* Suppress spurious logging statement
* Add Australian CDA name prefix & uri to mapping transform code
* Add new messages for tx.fhir.org
* Remove narrative from snapshot tests
* Improve complex extension rendering when rendering by profile
* Rewrite processing of map statements when generating snapshots to fix known bugs
* Updates to Capability Statement rendering (and minor Operation Definition rendering improvement)
* Fix wrong reference to CDA classes for unscoped class names
* fix rendering issue for R4 relationship codes in ConceptMap
* rework decimal lowBoundary() and highBoundary() after discussion on Zulip, and add extensive testing
* Fix existing test case for fixed up boundary handling in FHIRPath
* Add CodeSystem fetching for selected code systems for VSAC import
* Drop to saxon 11.6 for now
* fix issue with json unicode whitespace enscaping
* get Java generator running again (though no code regenerated)
* don't escape unicode whitespace in json files
* Fix NPE in questionnaire renderer
* Hack workaround for R4 issue with ProcessPriority
* Rewrite concurrency management for file system package cache
***NO_CI***
2024-08-27 16:42:13 +00:00
Grahame Grieve edd5b7a560
Merge pull request #1717 from hapifhir/do-20240816-xslt-external
Move all instantiation of transformerFactory to XMLUtils and set ACCESS_EXTERNAL flags automatically
2024-08-27 08:00:51 +08:00
Grahame Grieve 9aef2793ce
Merge pull request #1719 from robeastwood-agency/202408-re-cda-au-namespace
Add Australian CDA name prefix & uri
2024-08-27 07:59:36 +08:00
Grahame Grieve be52ad2e96
Merge pull request #1721 from hapifhir/2024-08-gg-misc
2024 08 gg misc
2024-08-27 07:58:48 +08:00
Grahame Grieve 6de8821dce compile fix 2024-08-23 21:52:10 +08:00
Grahame Grieve 1b84fcd5af remove narrative from snapshot tests 2024-08-23 21:51:04 +08:00
Grahame Grieve af75c51fea Improve complex extension rendering when rendering by profile 2024-08-23 21:50:53 +08:00
Grahame Grieve 636dbf14d4 rewrite processing of map statements when generating snapshots to fix known bugs 2024-08-23 21:50:25 +08:00
Grahame Grieve 14758663cf Fix wrong reference to CDA classes for unscoped class names 2024-08-22 08:07:28 +08:00
Grahame Grieve d05a30eeca fix rendering issue for R4 relationship codes 2024-08-19 07:09:17 +08:00
Grahame Grieve 00ad185882 rework decimal lowBoundary() and highBoundary() after discussion on Zulip, and add extensive testing 2024-08-19 07:08:59 +08:00
Rob Eastwood 326e1284eb
Add Australian CDA name prefix & uri
Fixes #1613
2024-08-18 08:44:28 +10:00
Vassil Peytchev c60b2bfe1d fixes on capability statement rendering 2024-08-16 16:53:51 -05:00
Vassil Peytchev eb1b18c853 Merge branch 'master' of github.com:vassilpeytchev/org.hl7.fhir.core into cs-changes 2024-08-16 14:05:20 -05:00
Vassil Peytchev 7dac6306a7
Merge branch 'hapifhir:master' into master 2024-08-16 13:53:35 -05:00
dotasek 60470b1a28 Move all instantiation of transformerFactory to XMLUtils
and set ACCESS_EXTERNAL flags automatically
2024-08-16 10:34:50 -04:00
Grahame Grieve c9bb2b4e55 Fix NPE in questionnaire renderer 2024-08-16 06:46:52 +08:00
Grahame Grieve 5bbb21aad5 Add check for multiple WG extensions 2024-08-16 06:46:41 +08:00
Grahame Grieve 6e5d5cdf40 Hack workaround for R4 issue with ProcessPriority 2024-08-16 06:46:15 +08:00
Vassil Peytchev 2bc9bf9a60 Merge branch 'master' of github.com:vassilpeytchev/org.hl7.fhir.core into cs-changes 2024-08-15 14:33:26 -05:00
Vassil Peytchev 07fe018e75 Update version 2024-08-15 14:32:53 -05:00