Commit Graph

1656 Commits

Author SHA1 Message Date
Grahame Grieve 03eb6e7bf0 more work doing terminology server testing 2023-04-08 15:06:51 +10:00
dotasek c4f8b65ba4
JUnit Bump (#1204)
* Bump JUnit Version and manage dependencies via bom

* Bump JUnit Version and manage dependencies via bom

* Remove explicit version references in child projects

* Vintage engine isn't managed. Manage it explicitly
2023-04-04 22:39:03 -04:00
Grahame Grieve 548284fcda rework language handling again 2023-04-02 23:08:17 +10:00
Grahame Grieve 0bbff8d14d rework package cache manager - add testing mode 2023-04-02 23:06:29 +10:00
Grahame Grieve 981d233827 fix index error validating HierarchicalTable 2023-04-01 07:34:14 +11:00
Grahame Grieve 7ef17d41d6 warning not error when the code system isn't known validating questionnaire answer options 2023-04-01 07:33:56 +11:00
Grahame Grieve e59c83855d Defining the existence of R6 2023-04-01 07:32:02 +11:00
Grahame Grieve e18cfcf0f8 Add reading translations 2023-03-30 23:30:53 +11:00
Grahame Grieve 1b6137967f i18n framework for HTML generation in renderers - step #1 2023-03-30 10:16:51 +11:00
Grahame Grieve 6a8e425696 Merge remote-tracking branch 'origin/master' 2023-03-30 06:37:57 +11:00
Grahame Grieve 12de53f336 Work on language translations 2023-03-30 06:32:10 +11:00
markiantorno aa8cb39580 Updating version to: 5.6.118-SNAPSHOT and incrementing test cases dependency. 2023-03-29 14:03:26 +00:00
markiantorno 3c04b80fdb Release: v5.6.117
## Validator Changes

* no changes

## Other code changes

* Fix R5 path for spec in generated narratives
* Hack to fix wrong R5 paths in generated narratives in extensions pack
* Suppress Prism rendering if ttl source is too big
* Fix up URLs in untouched elements when processing snapshots
* Fix up URLs in binding.description when generating snapshots
***NO_CI***
2023-03-29 13:36:02 +00:00
Grahame Grieve bbdb3dea89 undo dependency on test case packages (memory reasons) 2023-03-29 17:10:38 +11:00
Grahame Grieve d7817c785a XML utils - add tag 2023-03-29 15:06:59 +11:00
Grahame Grieve 520d13ab51 fix R5 path for spec 2023-03-29 15:06:35 +11:00
Grahame Grieve 0233e48a1c suppress prism if ttl source is too big 2023-03-29 15:06:24 +11:00
markiantorno 7928c858bb Updating version to: 5.6.117-SNAPSHOT and incrementing test cases dependency. 2023-03-27 23:58:35 +00:00
markiantorno 9f671be87b Release: v5.6.116
## Validator Changes

* Make checking displays in concept map not case sensitive and just a warning

## Other code changes

* Fix loading version of extensions package in test cases
* Don't suppress error when FML doesn't parse in FMLParser
* Add PathBuilder (documentation + clean up code)
***NO_CI***
2023-03-27 23:33:00 +00:00
Grahame Grieve 9460f1f64b
Merge pull request #1183 from hapifhir/do-20230315-pathbuilder
Give finer grained control over path building with dedicated PathBuilder class
2023-03-28 05:47:26 +11:00
dotasek 3044a188d9 Add PathBuilder documentation clean up code. 2023-03-27 10:41:44 -04:00
markiantorno 794a9c46b6 Updating version to: 5.6.116-SNAPSHOT and incrementing test cases dependency. 2023-03-25 12:24:55 +00:00
markiantorno e68a6171ee Release: v5.6.115
Final Code changes for R5 release

## Validator Changes

* Fix NPE validating maps

## Other code changes

* Refactor Loader for easier loading of earlier versions
* Fix various NPEs from version conversion testing
* First draft of Code generation for Extensions
* Improve summary message for map conversion outcome
* Move web path out of userData into resource field
* Fix FTP problem on windows (remote seperator)
* Update tests to use R5 package from test case repo everywhere
* Finish removing population type
* Rebuild .index.json if it's empty when installing a package
***NO_CI***
2023-03-25 11:55:37 +00:00
Grahame Grieve 7bf243f593
Merge pull request #1188 from hapifhir/gg-202303-ftp-windows
Fix FTP problem on windows
2023-03-24 22:20:05 +11:00
Grahame Grieve ac64a6bbd7 Fix FTP problem on windows 2023-03-24 21:13:54 +11:00
Grahame Grieve 37206a1f30
Merge pull request #1187 from hapifhir/gg-202303-r5-final-gen
Gg 202303 r5 final gen
2023-03-24 11:50:23 +11:00
Grahame Grieve b8777319da update tests to use R5 package from test case repo everywhere 2023-03-24 10:18:42 +11:00
Grahame Grieve d16e6d3249
Merge pull request #1184 from hapifhir/gg-202303-r5-final-gen
Gg 202303 r5 final gen
2023-03-23 21:42:19 +11:00
Grahame Grieve b5c48d1934 rebuild .index.json if it's empty 2023-03-23 20:49:55 +11:00
Grahame Grieve f122dc164f update code for R5 final 2023-03-23 20:48:38 +11:00
dotasek 36dce28691 Make getter for remote separator 2023-03-22 17:31:40 -04:00
dotasek 8ce7cd8323 Merge remote-tracking branch 'origin/master' into do-20230315-pathbuilder 2023-03-22 12:09:56 -04:00
markiantorno ce2480a745 Updating version to: 5.6.115-SNAPSHOT and incrementing test cases dependency. 2023-03-22 14:12:23 +00:00
markiantorno 7736f31847 Release: v5.6.114
## Validator Changes

* Fix up stated path in CodeSystemValidator
* Validate example URLs in value sets correctly
* Fix problem with composition library reference in R4

## Other code changes

* More work to sort out mappings
* Fix broken links in FMM & standards status levels
* Fix type of IG-parameter extension
* FTP: Stop re-initializing file type and mode with each upload (#1178)  …
* Fix snaphot generation warning when when profile-element is used
* fix path failure in tests
* Inline help16.png when generating narrative
* Suppress img.src=data content when rendering narrative
* Suppress value set expansion for core value sets that tx.fhir.org is getting wrong
* Fix NPE in profile comparison
***NO_CI***
2023-03-22 13:46:22 +00:00
Grahame Grieve 6173d77a24
Merge pull request #1181 from hapifhir/gg-202303-vs-example-urls
Gg 202303 vs example urls
2023-03-22 23:56:01 +11:00
Grahame Grieve 74a69de992 validate example URLs in value sets correctly 2023-03-22 23:06:33 +11:00
Grahame Grieve 05a367b088 validate example URLs in value sets correctly 2023-03-22 23:06:06 +11:00
dotasek 1442f1609c
Stop re-initializing file type and mode with each upload (#1178)
* Stop re-initializing file type and mode with each upload

* Methods for setting up buffer size
2023-03-21 15:36:19 -04:00
Grahame Grieve f796ffc57f fix issues with help16.png 2023-03-21 18:21:42 +11:00
Grahame Grieve 851d9c149d Merge remote-tracking branch 'origin/master' 2023-03-21 17:41:52 +11:00
Grahame Grieve c053ed9c6e suppress data attributes in XHTML 2023-03-21 17:27:14 +11:00
Grahame Grieve 5444c3a33a Inline help6.png in resources 2023-03-21 17:26:51 +11:00
markiantorno 8878bc9cef Updating version to: 5.6.114-SNAPSHOT and incrementing test cases dependency. 2023-03-21 00:29:38 +00:00
markiantorno 950c781ffc Release: v5.6.113
## Validator Changes

* Fix problems validating variables
* No longer ignore hl7.org/fhir/tools when validating

## Other code changes

* Fixed bug with incorrect parameter type when POSTing a $validate-code request to a remote terminology server
* Fix OS issue with zipslip protection
* Fix for where profile_element extension was being ignored when checking types after snapshot generation
* Fix generated name for FML rules to be a valid name
* Allow loaders to decide which resources to load into the context
***NO_CI***
2023-03-21 00:00:30 +00:00
Grahame Grieve 7ea1e5197d Fix OS issue with zipslip protection 2023-03-21 06:14:01 +11:00
dotasek 7a85bc00c9 Merge branch 'master' into do-20230315-pathbuilder 2023-03-20 11:38:53 -04:00
markiantorno 2a877b6faa Updating version to: 5.6.113-SNAPSHOT and incrementing test cases dependency. 2023-03-19 04:45:57 +00:00
markiantorno 59d8cf0bee Release: v5.6.112
## Validator Changes

* Don't validate codes in value sets if terminology vlidation is turned…  …
* Fix nPE validating bundles

## Other code changes

* Add file: to URL scheme list when checking for absolute URLs
* Adjust mappings handling code generating snapshots
* More improvements to r4/r5 transform testing
* Better error messages setting properties when transforming
* Better error messages converting types
* FHIRPath tests on element model
* Refactor FTPClient to perform fewer directory creates (#1159)  …
* Document how to build validator_cli locally (#1171)
***NO_CI***
2023-03-19 04:17:32 +00:00
Grahame Grieve e1fed0a8eb Merge remote-tracking branch 'origin/master' 2023-03-19 08:52:55 +11:00
Grahame Grieve 95f3fdd187 Add file: to URL scheme list 2023-03-19 08:52:49 +11:00
dotasek cbf864b1b9
Refactor FTPClient to perform fewer directory creates (#1159)
* Refactor FTPClient to perform fewer directory creates

* Restore old main

* More lenient test for delete timing (delete is fast)

* More timing leniency

* Add more checks for command completion, switch time track to nanos

* Logging logging logging
2023-03-16 14:53:59 -04:00
markiantorno 90bcab6554 Updating version to: 5.6.112-SNAPSHOT and incrementing test cases dependency. 2023-03-16 11:24:39 +00:00
markiantorno 7a9e5444c5 Release: v5.6.111
## Validator Changes

* Fixing issues parsing Bundle.issues in R5

## Other code changes

* Fix bugs handling XHTML
* Refactor package loading API - List(String) instead of String[]
***NO_CI***
2023-03-16 10:56:41 +00:00
Grahame Grieve cf9bd54a74 fix bug in XhtmlNode 2023-03-16 15:42:04 +11:00
Grahame Grieve 413cbb115a fix issues with R3R4MapTester 2023-03-16 14:08:00 +11:00
Grahame Grieve 27598a382d Fix issues with xhtml handling 2023-03-16 14:07:11 +11:00
Grahame Grieve 19cb639d37 refactor how types are handled loading packages 2023-03-16 13:26:34 +11:00
dotasek 0ae4aa9a0f Start pathbuilder work 2023-03-15 16:20:51 -04:00
markiantorno 2e36c8147a Updating version to: 5.6.111-SNAPSHOT and incrementing test cases dependency. 2023-03-14 12:43:23 +00:00
markiantorno e2967d923c Release: v5.6.110
## Validator Changes

* no changes

## Other code changes

* Fix NPE in string handling
***NO_CI***
2023-03-14 12:18:03 +00:00
Grahame Grieve 6be0becc61 fix for NPE 2023-03-14 21:28:37 +11:00
markiantorno b5bbe5108b Updating version to: 5.6.110-SNAPSHOT and incrementing test cases dependency. 2023-03-13 05:16:16 +00:00
markiantorno f48d413690 Release: v5.6.109
## Validator Changes

* Add format codes ```md``` and ```url``` to FHIRPath escape() and unescape()
* Add second parameter ```s_last``` to FHIRPath join() to use a different separator for the last time (e.g. ```.join(', ', 'and')```)

## Other code changes

* Parse status when parsing FML metadata
* Fix NPE in FHIRPath resolve() for contained resources ([discussion](https://chat.fhir.org/#narrow/stream/179167-hapi/topic/fix.20to.20FHIRPathEngine))
***NO_CI***
2023-03-13 04:45:19 +00:00
Grahame Grieve a45de03431 add tail() to Utilities 2023-03-13 13:53:41 +11:00
Grahame Grieve 07a3962ac2
Merge pull request #1167 from hapifhir/gg-202303-misc3
Gg 202303 misc3
2023-03-13 06:36:00 +11:00
Grahame Grieve 96f265653e fix run time test 2023-03-12 23:02:46 +11:00
markiantorno 209fcc8c0b Updating version to: 5.6.109-SNAPSHOT and incrementing test cases dependency. 2023-03-11 12:16:50 +00:00
markiantorno 35fb1b20c1 Release: v5.6.108
## Validator Changes

* no changes

## Other code changes

* Tdy up extensions for R5 release
* Hack R5 observation for fix after QA
* Improve StructureMap rendering again
* Clarify Error messages converting between versions
***NO_CI***
2023-03-11 11:49:55 +00:00
Grahame Grieve 957e9fe7cc Load all types not no types from Npm Package when no types are specified 2023-03-11 18:54:23 +11:00
markiantorno a3a9017bdb Updating version to: 5.6.108-SNAPSHOT and incrementing test cases dependency. 2023-03-10 13:09:53 +00:00
markiantorno 1e43fe43f0 Release: v5.6.107
## Validator Changes

* Add support for new ColorRGB code system (special case)

## Other code changes

* Add support for special case code systems internally
***NO_CI***
2023-03-10 12:44:48 +00:00
Grahame Grieve 10d560c859 Add support for locally processed special case code systems (and an example - rgb) 2023-03-10 21:28:08 +11:00
Grahame Grieve 1212b85b5e Change from Error to FHIRException when wrong value type is wrong on polymorphic element 2023-03-10 16:12:59 +11:00
dotasek cedadbcbe7
Convenience method for unchecked read only use of Utilities.path (#1164)
* Convenience method for unchecked read only use of Utilities.path

* Restore remove first null behaviour

* Method rename and update JavaDoc
2023-03-09 22:08:41 -05:00
markiantorno a3473354fd Updating version to: 5.6.107-SNAPSHOT and incrementing test cases dependency. 2023-03-09 21:19:20 +00:00
markiantorno d666d0aa80 Release: v5.6.106
## Validator Changes

* no changes

## Other code changes

* Additional checks in path construction for zip slip vulnerability
***NO_CI***
2023-03-09 20:50:18 +00:00
dotasek 909f7e64fe
Additional zip-slip tests (#1162)
* Additional zip-slip tests

* Fix windows path test
2023-03-09 14:30:53 -05:00
markiantorno f49eee623b Updating version to: 5.6.106-SNAPSHOT and incrementing test cases dependency. 2023-03-09 13:06:01 +00:00
markiantorno 0b8e2c3984 Release: v5.6.105
## Validator Changes

* More validation of StructureMaps

## Other code changes

* Add new R5 version to R4 version enumeration
* Fix for NPE generating profile comparison
* Add FML renderer for StructureMaps + various parsing fixes
***NO_CI***
2023-03-09 12:38:13 +00:00
Grahame Grieve 95813d9004 Fix FML Comments parsing, and add StructureMap rendering to pretty FML 2023-03-09 19:44:57 +11:00
Grahame Grieve 187d3e98c7 More fixes for structure map validation 2023-03-09 09:11:31 +11:00
markiantorno 8bd83810ea Updating version to: 5.6.105-SNAPSHOT and incrementing test cases dependency. 2023-03-08 08:23:43 +00:00
markiantorno 2a2fc497c7 Release: v5.6.104
## Validator Changes

* Fix up issues validating whitespace
* Multiple fixes to StructureMap and ConceptMap validation

## Other code changes

* rename ig-r4.json to ig-r4.jsonx in IGs
* move R5 package to test cases
***NO_CI***
2023-03-08 07:53:54 +00:00
Grahame Grieve 6870c7a32c
Merge pull request #1157 from hapifhir/gg-202303-qa-sm-validation-5
Gg 202303 qa sm validation 5
2023-03-08 10:10:55 +11:00
Grahame Grieve 53e67bc1cb handle re-use of mapping groups when validating maps 2023-03-08 09:11:24 +11:00
markiantorno d4d160eb29 Updating version to: 5.6.104-SNAPSHOT and incrementing test cases dependency. 2023-03-07 16:31:22 +00:00
markiantorno b18181ab7e Release: v5.6.103
## Validator Changes

* Fix structure map validation issues around type
* Revise whitespace handling for unicode conformance in validator
* Improved error message for output directory requirements
* Improve compact version sorting in renderer
* Add timestamp to compact format

## Other code changes

* Fix JSON escaping utility function
* Bug fixes in XHTML processing.
* Convertors: Bug Fixes in spec evaluation
* Convertors: patchUrls now patches fhir-type extension values
* R5: Fix FML parsing missing locations
* R5: Fix location bugs in FML parsing
***NO_CI***
2023-03-07 16:03:02 +00:00
Grahame Grieve 26eb1311a4 release notes 2023-03-07 23:33:35 +11:00
Grahame Grieve 6bf26255ab fix structure map validation issues around type 2023-03-07 20:58:51 +11:00
Grahame Grieve 58a933094f fix json escaping 2023-03-07 06:30:01 +11:00
Grahame Grieve 0c26f09721 revise whitespace handling for unicode conformance in validator 2023-03-07 06:25:45 +11:00
Grahame Grieve 5eca02f879 bug fixes 2023-03-06 23:33:38 +11:00
markiantorno 8a546d37eb Updating version to: 5.6.103-SNAPSHOT and incrementing test cases dependency. 2023-03-06 12:05:52 +00:00
markiantorno a7507e9887 Release: v5.6.102
## Validator Changes

* Add ConceptMap validation
* Add StructureMap validation
* Validate using type regex (had been omitted to now, mostly affects decimal validation)
* Add new -output-style values compact and compact-split
* Fix bug validating CDA choice elements without [x] in their names

## Other code changes

* Various fixes and utilities to support StructureMap & ConceptMap validation
* Fix Observation.value conversion between R5 and other versions
* Recognise R4B and R5 core packages
* Improvements to specification diffference engine for R5 publication
* More efficient XHTML AST model
***NO_CI***
2023-03-06 11:39:27 +00:00
Grahame Grieve 6559c4b245 improve SM validation message 2023-03-06 20:45:05 +11:00
Grahame Grieve 507ff74c23 recognise R4B and R5 core packages 2023-03-06 20:44:41 +11:00
Grahame Grieve adafa7eec8 Improve Specification Difference Engine 2023-03-06 16:55:02 +11:00
Grahame Grieve 36d22c522a make xhtml nodes use less memory 2023-03-06 10:32:54 +11:00
Grahame Grieve bf202870d9 Merge remote-tracking branch 'origin/master' 2023-03-06 06:20:01 +11:00
Grahame Grieve 356e500ab6 finish ConceptMap validation 2023-03-05 23:25:12 +11:00