1540 Commits

Author SHA1 Message Date
markiantorno
1c24341056 Release: v6.1.4
## Validator Changes

* Fix bug preventing Best Practice invariants being reported on, and add -best-practice parameter
* Fix issue not validating bundles when there are multiple profiles on entry.resource
* Add Japanese translations

## Other code changes

* Fixes for minor bugs discovered testing the XIG
* fix package program data path
***NO_CI***
2023-09-10 00:51:54 +00:00
Grahame Grieve
8bb908ef5c fix conversion issues that surfaced in xig 2023-09-07 17:04:23 +10:00
markiantorno
980f04557c Updating version to: 6.1.4-SNAPSHOT and incrementing test cases dependency. 2023-09-06 08:22:50 +00:00
markiantorno
6d37127e63 Release: v6.1.3
## Validator Changes

* Test concept map code validity
* Rework type checking on target profiles to support imposesProfile
* Fix imposesProfile extension being missed on primary profile
* Add support for IPS-AU
* Fix warning/error message about experimental property on CodeSystems and ValueSets
* Fix unknown code message to include code system version
* Add provisional SHLinks validation

## Other code changes

* Render Requirements.reference
* Convert Requirements.reference between versions
* Fix test that breaks on local machines + Fix system path for FileSystemPackageCacheManager
* Update to cqframework 2.11 and remove unused common-beanutils declaration (#1419)
* Better xhtml logging for debugging
* Fix DF markdown engine to escape < properly
* Support for sub-packages in packagelist.json
* NPE proofing property handling for Code Systems
* rework the way intermediary content is handled in the validator
* Restore CodeQL regex queries (#1422) + Whitelist BSD 3-clause license
***NO_CI***
2023-09-06 06:12:07 +00:00
Grahame Grieve
cd2c221da3 #1428 convert Requirements.reference between versions 2023-09-06 09:10:48 +10:00
Grahame Grieve
beb89b575a rework type checking on target profiles to support imposesProfile 2023-09-05 23:09:18 +10:00
markiantorno
bca705a3c6 Updating version to: 6.1.3-SNAPSHOT and incrementing test cases dependency. 2023-08-31 13:58:37 +00:00
markiantorno
f5e218c279 Release: v6.1.2
## Validator Changes

* FHIRPath fixes checking types discovered testing R6 build

## Other code changes

* Fix rendering of impose-profile extension
* Improvements to performance tracking code
* get FHIRFormat from SHC code
***NO_CI***
2023-08-31 13:29:31 +00:00
markiantorno
9048983155 Updating version to: 6.1.2-SNAPSHOT and incrementing test cases dependency. 2023-08-29 08:56:09 +00:00
markiantorno
2f6c61af78 Release: v6.1.1
## Validator Changes

* Fix problem validating code systems with content = not-present
* Further development of multi-language support on the tx server, and:
* Change the validator so that the default language is '*' (all languages) not 'en'

## Other code changes

* Improve license scanning and readme documentation
* Change xpp3 dependency
* Add client version to tx user-agent requests
* Suppress spurious xml parsing messages to System.err
***NO_CI***
2023-08-29 08:27:41 +00:00
Grahame Grieve
d0815682b8
Merge branch 'master' into language-rework 2023-08-28 20:13:42 +02:00
Grahame Grieve
333ffc340e Accept-Language 2023-08-25 16:21:56 +02:00
dotasek
985b66c276 Add version to agent header
+ remove unused getValidationEngine methods in Common
2023-08-24 15:31:09 -04:00
dotasek
490e57fa7c Swap out xpp3 dependency 2023-08-23 15:51:44 -04:00
markiantorno
fb64a720c8 Updating version to: 6.1.1-SNAPSHOT and incrementing test cases dependency. 2023-08-22 17:26:57 +00:00
markiantorno
e90863a271 Release: v6.1.0
## Validator Changes

* Performance fix: Delay loading content when loading IGs
* CodeSystem validation around count and content
* Add checking around internal status consistency and across dependencies (draft/experimental/retired/deprecated)
* Improved error messages on server failure
* Fix bug in warning about No valid Display Names found
* Use Supplements when validating display names
* Fix issue in FHIRPath .combine focus handling
* Check Extension fixed values for URLs - enforce consistency
* Fix R4 FML parser problem
* Track and report inactive status when reported from terminology server
* Add defense against large terminology operations causing obscure java errors
* Fix bug with client sending too much data to tx.fhir.org (big performance hit in some cases)
* Fix obscure bug with designations in a more specific language the the code system they are in

## Other code changes

* Significant upgrade of version comparison for profiles/extensions, value sets, and code systems, and integration into rendering framework
* Many minor changes to terminology functionality (reconciliation with differences with OntoServer) including service protection
  * Rename implySystem parameter to inferSystem per TI decision
  * rework how definitions are handled after discussion with Michael
  * add flat mode to tests for Ontoserver, and add experimental functionality
* fix rendering issue in subscription topic
* Add a renderer for ExampleScenario
* Automatically render markdown in code system concept definitions
* Fix loading issues in test mode for simplifier packages
* Remove spurious logging in FHIRPath engine
* Fix addChild error in PEBuilder (#1343) + Add test case
* CPT Importer
* Dependencies fixed/updated: okhttp, thymeleaf, commonmark & UCUM
* Xhtml fluent improvements + related XHtmlNode improvements
* Release new pubpack for new icons
* Json Object comparison: fix bug in arrays with multiple optional elements + improved error messages + support for external strings
* fix cross-version extensions web references where possible
* Don't suppress exceptions in terminology clients
* Add first cut of Profile Generation code
* Stop putting invalid codes in expansions if they are not in the code system
***NO_CI***
2023-08-22 17:01:34 +00:00
dotasek
1b33d2a537 Bump minor version 2023-08-22 11:56:22 -04:00
dotasek
62225652b6 Bump ucum + version fix build 2023-08-21 11:21:45 -04:00
dotasek
9ae060b5d9 Bump ucum version 2023-08-21 09:32:52 -04:00
Grahame Grieve
2acf546059 Don't suppress exceptions in clients 2023-08-19 20:15:29 +10:00
Grahame Grieve
5078a95016 update CPT model per changes to doco 2023-08-18 13:48:24 +10:00
Grahame Grieve
d129256742 fix fragment generation 2023-08-09 16:27:25 +10:00
Grahame Grieve
8094604da0 rework CPT import 2023-08-08 19:57:55 +10:00
Grahame Grieve
5a59db667f Merge remote-tracking branch 'origin/master' 2023-08-05 20:58:24 +10:00
Grahame Grieve
1fd7efe28b CPT Importer 2023-08-05 20:58:16 +10:00
markiantorno
9c3a6a7f37 Updating version to: 6.0.26-SNAPSHOT and incrementing test cases dependency. 2023-08-04 17:55:11 +00:00
markiantorno
bc3f348108 Release: v6.0.25
## Validator Changes

* Fix problem with evaluating extension contexts
* Fix up support for inactive codes and fix error message syntax
* Fix issue with collection status of resolve() being wrong
* Improved paths in profile error messages
* Fix problem with extension slicing being missed sometimes.
* Fix problem with code validation caching ignoring whitespace
* Produce useful error message when whitespace is wrong in display name
* Support for x-version extensions when generating snapshots

## Other code changes

* Render inactive property in expansions
* Resolve URL for x-version extensions
* Don't warn for loading a wrong version package more than once
* Do not supercede R4 terminology when loading R5 IGs
* Migrate type support when generating differentials
***NO_CI***
2023-08-04 17:27:42 +00:00
markiantorno
011167a218 Updating version to: 6.0.25-SNAPSHOT and incrementing test cases dependency. 2023-08-02 23:28:12 +00:00
markiantorno
42274a7bd3 Release: v6.0.24
## Validator Changes

* Create warnings for status on terminology resources
* Don't load resources from core examples package

## Other code changes

* fix up copy directory for case differences
***NO_CI***
2023-08-02 23:02:37 +00:00
Grahame Grieve
8a893ee793 update ICF importer to handle grouping levels 2023-07-29 08:48:09 +10:00
markiantorno
0165495626 Updating version to: 6.0.24-SNAPSHOT and incrementing test cases dependency. 2023-07-27 14:23:16 +00:00
markiantorno
db5d2b07c3 Release: v6.0.23
## Validator Changes

* Update IPS versions for -ips parameter (and get it working again)
* fix up validation of constraints in differentials (wasn't always happening)
* add warnings when collection status isn't right
* Better information messages when CodeSystem.content = not-present
* Add character check in validator for illegal XML Unicode characters
* Fix path problem in NpmPackage (some simplifier packages couldn't be processed)
* Fix NPE validating codes in value sets with improper expansions

## Other code changes

* Add support for Liquid assign
* Switch to DateTime type for Android Support
* Code clean up: remove unused imports
* Fix JSON unicode encoding handling of chars <32 code points
***NO_CI***
2023-07-27 13:56:32 +00:00
Grahame Grieve
3acfd8a879 Remake example scenario changes 2023-07-27 22:17:31 +10:00
Grahame Grieve
3eef08dab8 remove unused imports 2023-07-26 08:31:21 +10:00
markiantorno
592fba54cc Updating version to: 6.0.23-SNAPSHOT and incrementing test cases dependency. 2023-07-22 17:06:10 +00:00
markiantorno
b7fd3be910 Release: v6.0.22
## Validator Changes

* Add support for private NPM registries requiring authentication
* Don't check FHIRPaths on differentials - not enough type info to test reliably
* Fix bugs in FHIRPath handling of logical models
* Fix minor bugs in type handling for Logical Models and R3 Profile validation
* Remove spurious warning message validating CDA documents
* Add value set qa checking
* Fixes to validator for new CDA package (proper handling of logical model types)
* Fix up bi-di warning message
* Add provisional support for alternate codes
* Workaround ClinicalImpression definition problem in core spec
* Fix to get context variables right when running invariants + fix for parent not always being populated + check type in derived profiles
* Fix checking FHIRPath statements on inner elements of type slices
* Fix scan of naming systems (error validating namespaces)
* Fix issue checking invariant expressions in R5

## Other code changes

* FHIRPath in HAPI mode: Strip returned IIdType of qualifier, version, and resourceType
* Update R4 and R4B FHIRPath implementations for changes picked up in R5 usage
* Fix obligation rendering message
* Fix missing extensions when converting value set properties
* Fix type of x-unknown-code-system in $validate-code response
* Fix CDA validation test case
* Much work on TxServer test case framework + Update terminology server implementation and tests for changes to test cases
* OMOP Vocabulary and ICFImporter development
* Add OWASP dependency check (#1347), upgrade many packages, remove ShEx
* Add github action to upload results
* Remove unused javalin dependency, also generate html reports
* Added test case for ExampleScenario conversion (R4/R5) and significantly bulked up the conversion process
* Remove unneeded resources (#1346) (help16.png)
* Add test for setVsAsUrl parameter setting (#1345)
***NO_CI***
2023-07-22 16:41:19 +00:00
Grahame Grieve
93e1b3e4b3 fix missing extensions when converting value set properties 2023-07-21 05:37:16 +10:00
Grahame Grieve
38052a6e75 ICFImporter for staging support of ICF 2023-07-20 08:19:59 +10:00
Grahame Grieve
55c12301ba remove shex 2023-07-18 11:06:06 +10:00
Grahame Grieve
27961d3da5 Finish off OMOP Importer 2023-07-18 11:05:21 +10:00
markiantorno
6a187a9232 Updating version to: 6.0.22-SNAPSHOT and incrementing test cases dependency. 2023-07-07 12:36:19 +00:00
markiantorno
45ae02cf1d Release: v6.0.21
## Validator Changes

* Fix up processing conditions in -watch mode
* Fixes for validating against logical models (for fixed up CDA core package)
* Better testing of extension context (when limited to profile)
* Fix handling of UCUM codes when no terminology server
* Report hints and warnings on some code validation that had been not reported
* Better validation of valuesets when checking derived profiles

## Other code changes

* Render reference identifier if there is one when rendering references
* Hide empty place holder column when rendering by profile
* Fix npe rendering extensions + improve base64 presentation
* OMOP terminology importer
* update SPDX code system in R4/R4B for support for not-open-source
* Fix up type handling for conversions between R4/R4B and R5 (OperationDefinition fix)
***NO_CI***
2023-07-07 12:10:05 +00:00
Grahame Grieve
2cb7c052af OMOP importer 2023-07-05 07:23:47 +10:00
Grahame Grieve
6956f39502 #1329 Fix up type handling for conversions between R4/R4B and R5 (OperationDefinition.parameter.type) 2023-07-05 07:17:08 +10:00
markiantorno
6db701767a Updating version to: 6.0.21-SNAPSHOT and incrementing test cases dependency. 2023-06-30 23:19:08 +00:00
markiantorno
6a6c425562 Release: v6.0.20
## Validator Changes

* no changes

## Other code changes

 * Fix for SPDR not-open-source in code
 * fix name and title in VSAC import process
 * More work on Android support + fix issues in NPM package installation that caused
***NO_CI***
2023-06-30 22:52:51 +00:00
markiantorno
3c8e26f078 Updating version to: 6.0.20-SNAPSHOT and incrementing test cases dependency. 2023-06-30 05:37:45 +00:00
markiantorno
3b82a4d829 Release: v6.0.19
## Validator Changes

* no changes

## Other code changes

* Fix for SPDR not-open-source in code
* fix name and title in VSAC import process
* More work on Android support
***NO_CI***
2023-06-30 05:08:20 +00:00
Grahame Grieve
2389190863 fix up VSAC imports 2023-06-30 08:40:39 +10:00
markiantorno
06a1d523a3 Updating version to: 6.0.19-SNAPSHOT and incrementing test cases dependency. 2023-06-29 05:12:43 +00:00