Commit Graph

470 Commits

Author SHA1 Message Date
markiantorno f54e56e74c Updating version to: 5.0.20-SNAPSHOT 2020-08-05 23:31:54 +00:00
markiantorno f6071cb0df Release: v5.0.19
Validator:
* Improved handling of terminology timeout issues

Other code changes:
* fix questionnaire rendering to create valid resources
***NO_CI***
2020-08-05 22:50:40 +00:00
markiantorno ea322996f3 Updating version to: 5.0.19-SNAPSHOT 2020-08-03 21:14:01 +00:00
markiantorno 18cf563e78 Release: v5.0.18
Validator Fixes:
* better validation of external references. Note: this is a potentially significant change: things that were called ok before may not be now, and things that were not ok before may become so, depending on the interplay between this and auto-load, further work may be needed here
* Support better validation of version specific profiles in meta.profile. This may also find new errors that were not previously being found
* Support auto-determination of the version of FHIR to use when using the java validator
* auto-load packages from the package server when references to profiles etc are encountered
* look for references inside other parameters in Parameters resource
* no validation for CanonicalResource.url (further work needed)

Other Code changes:
* Rendering: add rendering for Parameters resources
* Rendering: refactor of resource resolution code to support Parameters
* General clean up of rendering consistency & implement additional details when rendering (including patient summary)
* Rendering: major overhaul of DiagnosticReport rendering
* Fix NPE bug in value set comparison

***NO_CI***
2020-08-03 20:51:09 +00:00
Grahame Grieve 4fd6f0e4dc fix version dependency on test cases 2020-08-04 05:43:16 +10:00
markiantorno 82125235a0 Updating version to: 5.0.18-SNAPSHOT 2020-07-30 04:47:14 +00:00
markiantorno a375f58c82 Release: v5.0.17
* Batch validation of codes in value sets
* Fix path problem doing comparisons
* Don't produce 2 columns for status for deprecated codes
* Fix errors in StructureDefinition validation
***NO_CI***
2020-07-30 04:18:42 +00:00
markiantorno a154f454b4 Updating version to: 5.0.17-SNAPSHOT 2020-07-28 05:15:29 +00:00
markiantorno 5dcef3e530 Release: v5.0.16
* fix evaluation of codes in code systems that are labelled content = fragment
* fix url for cqfmeasures project
* change from error to warning for code system fragments

***NO_CI***
2020-07-28 04:51:08 +00:00
markiantorno 2fc1d481e4 Updating version to: 5.0.16-SNAPSHOT 2020-07-27 15:40:41 +00:00
markiantorno c55982c47b Release: v5.0.15
* Version comparison support
* Fix for problem validating search parameter derivation
* Added lazy resource loading - improve loading times and memory requirements in advance of the challenge of loading UTG for most use cases
* Fixed bug where canonical resource has no URL
***NO_CI***
2020-07-27 15:14:44 +00:00
Mark Iantorno 28710fcb13 Updating test case dependency to v1.1.27
***NO_CI***
2020-07-27 14:35:02 +00:00
markiantorno b877474fc8 Updating version to: 5.0.15-SNAPSHOT 2020-07-17 22:21:01 +00:00
markiantorno 675c2751aa Release: v5.0.14
* Fix for temp directory creation test on Windows machines
* Deployment fix
***NO_CI***
2020-07-17 21:55:26 +00:00
markiantorno e14de3b339 Updating version to: 5.0.14-SNAPSHOT 2020-07-17 05:55:20 +00:00
markiantorno fb886a7217 Release: v5.0.13
Validator:
* Add support for conformsTo in invariants on elements
* Fix bug in assumeValidRestReferences doing bundle validation
* Add -show-times parameter
* Handle weird ege case for fixedReference

Code:
* add support for row opacity in rendered tables
* fix cross version convertor for DataRequirements
* fix rendering of multiple type profiles
* add code for converting resource names between versions
* add FHIRPath engine to i18n framework
* fix bundle rendering
* change HTML parser to parse doctype declaration, and move html validation to the validator
* snapshot generator - fix bug where slices get cardinaliyt min=1 by default
***NO_CI***
2020-07-17 05:45:51 +00:00
Mark Iantorno dfc46a7522 Updating test case dependency to v1.1.26
***NO_CI***
2020-07-17 00:26:37 +00:00
markiantorno facb2ca0a8 Updating version to: 5.0.13-SNAPSHOT 2020-07-07 02:37:39 +00:00
markiantorno b770fb8a2c Release: v5.0.12
* Fix bug in snapshot generation - not handling case where content is sliced, base slicing detail is provided, and max slices = 1
* More work on validating existing snapshots

***NO_CI***
2020-07-07 02:27:57 +00:00
Grahame Grieve ce47093c12
Gg work (#267)
* fix for new test case about profiles restricting types

* update release notes

* fix NPEs doing ProfileComparison

* fix non-translated messages in InstanceValidator

* Fix validation issues

* update to 1.1.22 tests

* fix bug finding children in getChildList when element is a reference to another element

* fixes to QuestionnaireRenderer + add QuestionnaireResponseRenderer

* Add more informative error when no type parser provided

* fix bug where current/dev builds do not properly update the cache

* improve test error message

* set up release notes

* fix bug with CDA snapshot generation

* fix bug in type checking code

* Add support for validating against ImplementationGuide.global

* Fix bug in QuestionnaireResponse rendering

* update tests dependency

* ping build

* Add additional StructureDefinition validation

* update release notes

* fix npe rendering diagnostic reports without subjects

* don't add note on untranslatable messages

* check existing snapshots (preliminary)

* add signpost message tracking

* start working on profile generating bug

* Fix bug in snapshot - not handling case where content is sliced, base slicing detail is provided, and max slices = 1

* fix release notes
2020-07-06 20:21:40 -04:00
markiantorno ab8bbb5491 Updating version to: 5.0.12-SNAPSHOT 2020-07-04 00:25:03 +00:00
markiantorno 9d5cb114a2 Release: v5.0.11
* Added text/cql.identifier media type to Measure validation
* Fix bug in QuestionnaireResponse rendering
* Validate based on ImplementationGuide.global
* add validation parameter -crumb-trails
* improve validation of StructureDefinitions

***NO_CI***
2020-07-04 00:15:32 +00:00
Mark Iantorno 48e5b3894f Updating test case dependency to v1.1.24
***NO_CI***
2020-07-03 23:22:03 +00:00
Grahame Grieve 92c02d2294
Add support for validating against ImplementationGuide.global (#266)
* fix for new test case about profiles restricting types

* update release notes

* fix NPEs doing ProfileComparison

* fix non-translated messages in InstanceValidator

* Fix validation issues

* update to 1.1.22 tests

* fix bug finding children in getChildList when element is a reference to another element

* fixes to QuestionnaireRenderer + add QuestionnaireResponseRenderer

* Add more informative error when no type parser provided

* fix bug where current/dev builds do not properly update the cache

* improve test error message

* set up release notes

* fix bug with CDA snapshot generation

* fix bug in type checking code

* Add support for validating against ImplementationGuide.global

* Fix bug in QuestionnaireResponse rendering

* update tests dependency

* ping build

* Add additional StructureDefinition validation

* update release notes
2020-07-03 18:25:15 -04:00
markiantorno 97f6758969 Updating version to: 5.0.11-SNAPSHOT 2020-07-01 00:52:38 +00:00
markiantorno 9602898b73 Release: v5.0.10
* Added text/cql.identifier media type to Measure validation
***NO_CI***
2020-07-01 00:43:41 +00:00
markiantorno 7f7e83f6f8 Updating version to: 5.0.10-SNAPSHOT 2020-06-27 00:25:51 +00:00
markiantorno 4ca25bdb52 Release: v5.0.9
* Two significant bug fixes for the validator (thanks Mark Burnett from Babylon Health for finding them):
  * The validator was not enforcing type restrictions when some profiles restricted elements with choices to a single type
  * The validator was only creating warnings not errors for required bindings on some Quantities
  * + Fix handling of infrastructural terminology failings on Codings - treat them as warnings not errors
* Add extra validation for value sets (check concept codes are valid)
* Add extra code to check derivation consisteny for SearchParameter resources
* More Improvements to Questionnaire Rendering

***NO_CI***
2020-06-27 00:17:13 +00:00
Grahame Grieve b08c12f2c4
update test case dependency to 1.1.22 (#263)
* fix for new test case about profiles restricting types

* update release notes

* fix NPEs doing ProfileComparison

* fix non-translated messages in InstanceValidator

* Fix validation issues

* update to 1.1.22 tests
2020-06-26 20:07:30 -04:00
Grahame Grieve e01d007be0 update test case dependency 2020-06-26 07:37:09 +10:00
Mark Iantorno 7bbbd7af0a
Gpg profile (#258)
* removing old pipeline files

* adding gpg profile
2020-06-24 17:27:14 -04:00
markiantorno 344d778a87 Updating version to: 5.0.9-SNAPSHOT
***NO_CI***
2020-06-19 22:15:34 +00:00
markiantorno 87f1c42b89 Release: v5.0.8
***NO_CI***
2020-06-19 22:06:03 +00:00
Mark Iantorno 8fffe410b6
Updating test case dependency (#253) 2020-06-19 16:26:41 -04:00
Grahame Grieve 779d50b61b Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into gg-work 2020-06-14 07:07:42 +10:00
markiantorno 49c35b1de2 Updating version to: 5.0.8-SNAPSHOT
***NO_CI***
2020-06-13 13:12:37 +00:00
markiantorno b2ecaa2bfa Release: v5.0.7
* Override extension methods in BackboneElement to look in modifierExtensions as well as extensions
* First draft of Profile Comparison tools (org.hl7.fhir.r5.comparison)
* Improved error messages when snapshot generation fails when slicing something that doesn't repeat
* Improvements for CDA round-tripping (XML esacping issues, xsi:type related issues, namespacing issues)
* Fix bug rendering DiagnosticReports with multiple categories
* adjust check on Attachment to only be an warning (when no meaningful content exists)
* add security check mode to Validator
***NO_CI***
2020-06-13 12:51:27 +00:00
Mark Iantorno b51172b898
Small change to trigger pipeline (#246) 2020-06-12 19:11:22 -04:00
Grahame Grieve 0172475576 update test case dependency 2020-06-12 11:09:48 +10:00
Mark Iantorno a88b79f41b
Fix for Azure pipelines being able to build and deploy core libraries properly.
* ...yup. it's really dumb

* wip

* wip

* Releases properly now on Azure.

* switching back to 5.0.7-SNAPSHOT version

* removing main method from Marker class
2020-06-10 18:25:23 -04:00
Grahame Grieve 94467b270a standardise terminology client across versions 2020-06-07 08:42:14 +10:00
markiantorno a30fba20e7 Upping fhir-test-case version so tests pass 2020-06-05 10:07:42 -04:00
markiantorno 9c3d678f6e changing package cache manager to the new version used in r4 so builds pass. reverting changes to fork number in maven 2020-06-04 09:57:34 -04:00
markiantorno cc0bd10835 I have no idea what I'm doing 2020-06-03 19:18:13 -04:00
markiantorno e8756694d8 forking might be bad 2020-06-03 16:00:48 -04:00
markiantorno 16ef9c5692 upping fhir-test-cases dep 2020-06-03 15:43:09 -04:00
markiantorno 7a63c0b353 wip 2020-06-03 13:33:12 -04:00
markiantorno 6e0795c461 upping test dependency to pass testXsiDeserialiserXMLParser test 2020-06-02 10:56:12 -04:00
Grahame Grieve a0245ca926 Release new version 5.0.6 2020-06-01 17:40:06 +10:00
Grahame Grieve 970c28bb26 update test case dependency 2020-05-30 12:43:22 +10:00
Grahame Grieve 05ac3ebc98 Release new version 5.0.5 2020-05-30 09:55:30 +10:00
markiantorno a8176a841d Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into junit_test_issues 2020-05-28 14:16:19 -04:00
markiantorno a8dcaca261 Adding conditional execution for new Narrative test, removing test suite, as we don't use those anymore, they are from JUnit 4 and cause the vintage engine to kick in, which double runs some tests. 2020-05-28 13:48:32 -04:00
markiantorno 2f472a10e5 test commit to trigger SNAPSHOT pipeline 2020-05-27 11:01:13 -04:00
Grahame Grieve 998d1e0afc Release new version 5.0.4 2020-05-27 11:06:30 +10:00
Grahame Grieve ccb6b067b3 Release new version 5.0.3 2020-05-26 06:15:36 +10:00
Grahame Grieve 50ea83322f Release new version 5.0.2 2020-05-22 08:58:45 +10:00
Grahame Grieve 786aa001c5 fix misleading error message + uppate for new release of tests 2020-05-22 08:17:36 +10:00
jamesagnew 2e5d9ff77c Version bump to 5.0.1 2020-05-12 19:27:30 -04:00
jamesagnew 60502b3c77 Prepare for 5.0.0 release 2020-05-12 11:33:54 -04:00
Grahame Grieve 463a557402 Release new version 4.2.30 2020-05-12 11:54:28 +10:00
Grahame Grieve daa58aea8f Release new version 4.2.29 2020-05-11 17:25:24 +10:00
Grahame Grieve b43497897b upgrade to v4.4.0, with attendant fixes 2020-05-11 17:09:14 +10:00
Grahame Grieve 5f74bea327 move tests & do new release 2020-05-10 09:18:54 +10:00
Grahame Grieve 3afd2a9c32 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2020-05-08 12:01:08 +10:00
Grahame Grieve 2af8d94081 new release 2020-05-08 12:00:51 +10:00
markiantorno ef660d59db Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into azure_pipelines_setup 2020-05-06 11:26:36 -04:00
markiantorno 74a63f2bce pathing issues 2020-05-06 11:00:57 -04:00
Grahame Grieve c5c0a8db92 Release new version 4.2.26 2020-05-06 11:16:19 +10:00
Grahame Grieve 17ef340972 Release new version 4.2.25 2020-05-06 11:16:01 +10:00
markiantorno 3717b9e76b wip 2020-05-05 11:36:14 -04:00
markiantorno b561ef9178 wip 2020-05-04 20:30:59 -04:00
markiantorno d7d61d0e36 jacoco running and aggregating, attempting to integrate with reports 2020-05-04 12:00:41 -04:00
Grahame Grieve ef2f9e01c7 Release new version 4.2.25 2020-05-02 12:52:12 +10:00
Grahame Grieve 868fbb5f95 Release new version 4.2.25 2020-05-02 10:53:58 +10:00
Grahame Grieve b214e99930 Release new version 4.2.24 2020-05-02 06:57:31 +10:00
Grahame Grieve d5bb555151 fix for issue #188 + fix for transition of ConceptMap enumeration 2020-05-02 06:56:29 +10:00
Grahame Grieve f8ca02d697 Release new version 4.2.23 2020-05-01 11:15:25 +10:00
markiantorno 89f98bb960 I cast you out unclean spirit. 2020-04-29 16:55:40 -04:00
Grahame Grieve 6110b56396 Release new version 4.2.22 2020-04-29 20:37:31 +10:00
Grahame Grieve 608149e494 Release new version 4.2.21 2020-04-29 14:57:18 +10:00
Grahame Grieve 5d30dd61aa add icd-9-cm to list of known URIs 2020-04-29 14:51:27 +10:00
Grahame Grieve 6f3362918d Release new version 4.2.20 2020-04-28 13:27:23 +10:00
markiantorno 7673400a13 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into testing_updates 2020-04-23 10:51:49 -04:00
Grahame Grieve 602e684bc6 Release new version 4.2.19 2020-04-23 21:07:04 +10:00
markiantorno b800246752 surefire plugin commented code removed 2020-04-21 20:44:26 -04:00
markiantorno a7e874501e Tests updated to JUnit Jupiter. Various quality of life improvements. 2020-04-21 20:36:17 -04:00
Grahame Grieve 175d5fa0b7 Release new version 4.2.18 2020-04-21 13:58:17 +10:00
Grahame Grieve 957a71dc41 better debugging of error strings 2020-04-21 13:57:41 +10:00
markiantorno bd17bc716b wip 2020-04-20 13:37:29 -04:00
Grahame Grieve 4bd0d60e5c Release new version 4.2.17 2020-04-12 08:25:18 +10:00
Grahame Grieve d97e408d3c Release new version 4.2.16 2020-04-11 20:50:39 +10:00
Grahame Grieve 6e3af326de minor fixes for getting tests passing 2020-04-09 11:33:41 +10:00
Grahame Grieve 01de20c310 Release new version 4.2.15 2020-04-09 10:50:54 +10:00
Grahame Grieve 5865f8da3e Release new version 4.2.14 2020-04-06 10:12:24 +10:00
Grahame Grieve 7400263b86 Change validator so root resource id is not in the same space as all other ids 2020-04-06 10:11:33 +10:00
markiantorno 85a2352fdf Adding dependencies for CQL-to-ELM libs. See https://github.com/cqframework/clinical_quality_language/blob/master/Src/java/cql-to-elm/OVERVIEW.md 2020-04-02 22:51:46 -04:00
Grahame Grieve aef4404405 Release new version 4.2.13 2020-04-02 11:07:25 +11:00
Grahame Grieve 9e59ce2323 Release new version 4.2.12 2020-03-31 11:21:06 +11:00
Grahame Grieve 753d3bd971 fix problems fetching packages 2020-03-31 10:15:49 +11:00
Grahame Grieve 092a694a3f Release new version 4.2.11 2020-03-28 06:52:41 +11:00
Grahame Grieve 6baf62eca2 Release new version 4.2.12 2020-03-28 06:50:41 +11:00
Grahame Grieve 60cba0c52c * fix internal exception with missing type in R3 + add missing short definitions from differential format 2020-03-28 06:17:01 +11:00
Grahame Grieve ac72dff882 More validation of URL charaters in XHTML ```a``` and ```img``` 2020-03-26 06:47:53 +11:00
jamesagnew 97ddf60066 Version bump 2020-03-17 07:55:15 -04:00
Grahame Grieve 849b65417a Release new version 4.2.9 2020-03-17 14:58:36 +11:00
Grahame Grieve 5f3f84cf22 Release new version 4.2.8 2020-03-13 16:47:14 +11:00
Grahame Grieve 742f444b53 Release new version 4.2.7 2020-03-13 13:07:01 +11:00
Grahame Grieve c63c35293a update for new tests 2020-03-13 12:58:35 +11:00
Grahame Grieve d8262c056c Release new version 4.2.6 2020-03-05 16:54:07 +11:00
Grahame Grieve 5d971f35e9 Release new version 4.2.5 2020-03-03 21:30:01 +11:00
Grahame Grieve 65fd77ed76 Fix version issue in validation engine + handle loading latest version of a package 2020-03-03 21:27:37 +11:00
Grahame Grieve 4ab61c9c8c Release new version 4.2.4 2020-02-28 14:27:52 +11:00
Grahame Grieve 1c8797f628 support slicing on patternCoding 2020-02-28 14:27:04 +11:00
Grahame Grieve f1dc0e5754 Release new version 4.2.3 2020-02-25 09:25:56 +11:00
Grahame Grieve 4e3e21219e Release new version 4.2.2 2020-02-22 08:06:58 +11:00
Grahame Grieve fe1afa7b4c Release new version 4.2.1 2020-02-19 12:06:21 +11:00
Grahame Grieve 1c61ea25d5
Merge pull request #135 from hapifhir/update_path_tests
updating unit tests so they pass on my mac. Also updating test to Junit5
2020-02-17 13:34:37 +11:00
jamesagnew c27baa29bc FIx version bump - should be 4.2.1-SNAPSHOT 2020-02-16 20:43:13 -05:00
jamesagnew d87a1e61d9 Version bump to 4.3.x 2020-02-16 19:20:42 -05:00
markiantorno 3c614058f7 updating unit tests so they pass on my mac. Also updating test to Junit5 2020-02-14 14:03:59 -05:00
Grahame Grieve 17eb1c41f7 Release new version 4.1.63 2020-02-13 21:23:40 +11:00
Grahame Grieve bc1f87e29f Release new version 4.1.62 2020-02-13 12:26:15 +11:00
Grahame Grieve 4708fcb49e add support for file: in package version (per NPM spec) 2020-02-09 08:14:30 +11:00
Grahame Grieve b6ba504320 Release new version 4.1.61 2020-02-07 10:55:06 +11:00
Grahame Grieve c0976dd365 add support for [user] in path 2020-02-07 10:30:17 +11:00
Grahame Grieve 2732ef3dd5 Release new version 2020-02-02 23:12:05 +11:00
Grahame Grieve b112b82951 Release new version 2020-02-02 06:13:54 +11:00
Grahame Grieve 53fc5cf770 add logic to test capability statement 2020-02-02 06:13:24 +11:00
Grahame Grieve ca29fdf182 Release new version 2020-01-31 08:23:17 +11:00
Grahame Grieve 1831d19541 Release new version 2020-01-30 11:09:52 +11:00
Grahame Grieve d807becebb improve slicing hints and fix validation of FHIRPath URLs 2020-01-30 11:08:12 +11:00
Grahame Grieve 6242a70b68 Release new version 2020-01-29 19:33:18 +11:00
Grahame Grieve 01c5789b89 Deal with choices that constrain elements and not types 2020-01-29 19:32:43 +11:00
Grahame Grieve e286d5b7bb Release new version 2020-01-29 13:40:22 +11:00
markiantorno f25f62ff0f Removing dependencies for the parser. 2020-01-27 11:08:30 -05:00
markiantorno 3132dbfc7f Refactored main version convertor files
- All convertors now have static access, previously 10_30, 10_40, 10_50
  needed to be instantiated
- All code specific to resource types has been moved into it's own file.
  Ex. Patient dstu3 -> r5 is located in conv30_50/Patient30_50.java
2020-01-27 10:29:42 -05:00
Grahame Grieve dfd3ff067d Release new version 2020-01-27 21:15:09 +11:00
Grahame Grieve ab0f3f0996 autofix slice names 2020-01-27 21:13:02 +11:00
Grahame Grieve ee6e0d90de Release new version 2020-01-24 17:20:23 +11:00
Grahame Grieve 2b1021adbd Release new version 2020-01-22 10:56:12 +11:00
Grahame Grieve 32240f41c7 Release new version 2020-01-21 12:27:12 +11:00
Grahame Grieve 300c87a657 better validation of example references by validator 2020-01-21 11:38:05 +11:00
Grahame Grieve 240e412cf6 Release new version 2020-01-20 21:56:07 +11:00
Grahame Grieve 53c35ced6b Release new version 2020-01-19 16:55:34 +11:00
Grahame Grieve 2ce844175f fix bugs with extension context checking 2020-01-19 16:53:48 +11:00
Grahame Grieve 06b413f028 Release new version 2020-01-17 21:45:56 +11:00
Grahame Grieve d84758f54d Release new version 2020-01-17 10:54:24 +11:00
Grahame Grieve 98df625435 Release new version 2020-01-15 17:55:48 +11:00
Grahame Grieve 9f1697dad1 Release new version 2020-01-15 08:08:07 +11:00