Commit Graph

2185 Commits

Author SHA1 Message Date
Grahame Grieve f2dc77272b fix problem creating CDA type discriminators 2023-11-14 12:00:29 +11:00
Grahame Grieve 618930e5bf Planning ahead: Add fhirVersion to R5 Base and IWorkerContext methods, and move IContextResourceLoader, ValidationResult and CodingValidationRequest out of IWorkerContext to their own clasess 2023-11-14 06:38:40 +11:00
Grahame Grieve e56dfb8693 Add support for NZ IPS 2023-11-13 08:10:56 +11:00
Grahame Grieve 4c6a318749 Fix bundle resolution rules to conform to the specification in version R4+ 2023-11-13 07:38:31 +11:00
markiantorno c128f3b61d Updating version to: 6.2.4-SNAPSHOT and incrementing test cases dependency. 2023-11-11 06:49:45 +00:00
markiantorno 7cb9286e3f Release: v6.2.3
## Validator Changes

* Remove wrong LOINC code for circumference % from vital signs scan
* Remove spurious error when profile discriminators have no value
* Fix as() and ofType() in FHIRPath engine to support type namespaces properly
* Fix problem with FHIRPath engine wrongly checking types in context of CDA
* Fix date validation error in CDA validation
* Update error handling to preserve message ids properly

## Other code changes

* Add rendering of II.system
* Fix extension handling when generating snapshots - which are ignored, overwrite, or add
* Delete some empty java files
* Remove unnecessary snapshot tests
***NO_CI***
2023-11-11 06:24:19 +00:00
Grahame Grieve 89306e6ce3 Remove wrong LOINC code from vital signs scan 2023-11-11 08:26:56 +11:00
Grahame Grieve 7ce6334351 remove spurious error when profile discriminators have no value 2023-11-11 08:26:40 +11:00
Grahame Grieve 110d627e83 fix problem with FHIRPath engine wrongly checking types in context of CDA 2023-11-10 16:39:05 +11:00
Grahame Grieve dc791becaa update error handling to preserve message ids properly 2023-11-09 16:51:15 +11:00
markiantorno c717f898ef Updating version to: 6.2.3-SNAPSHOT and incrementing test cases dependency. 2023-11-07 03:30:21 +00:00
markiantorno 3a7733ea02 Release: v6.2.2
## Validator Changes

* Validate Vital signs Profiles when validating observations
* Hack around problem with vs-1 constraint in R4
* Check for retired status when multiple OID matches exist
* Fix for validating extensions on R5 resources in R4 (R4 special case)
* Minor fixes for standalone ViewDefinition validator

## Other code changes

* Revised Capability Statement rendering (Thanks Vassil Peytchev)
* Fix bug rendering primitive types with an extension that provides a value alternative
* Add links to references when rendering json and xml instances in IG publisher
* Fix bug generating profile spreadsheets
* Support suppress examples when generating snapshots
* VSAC Import improvements
***NO_CI***
2023-11-07 02:46:28 +00:00
Grahame Grieve 0685bc7a81 Fix for validating extensions on R5 resources in R4 (R4 special case) 2023-11-07 09:14:42 +11:00
Grahame Grieve 35c7e18e55 Validate Vital signs Profiles when validating observations 2023-11-05 09:19:39 +11:00
Benjamin Flessner 301e5acfaa Update CDA validation targets 2023-11-01 14:44:11 -05:00
markiantorno a47dccc7f6 Updating version to: 6.2.2-SNAPSHOT and incrementing test cases dependency. 2023-10-31 16:23:32 +00:00
markiantorno 3c198658e1 Release: v6.2.1
## Validator Changes

* Validate contextInvariant in extension definitions
* fix Typo in TI WG name
* Handle unknown constants properly in FHIRPath
* Fix handling of type ancestors at the root of FHIRPath expressions
* CDA templates with no extension value use urn:oid: not urn:hl7ii:
* Allow URL as a type of string in FHIRPath type checking
* Fix semver validation
* Fix problem resolving context in CDA invariants

## Other code changes

* Finish SQL in FHIR Implementation, but disable sql on fhir tests until package is packaged properly by next release of IG publisher
* Fixes to Search Parameter rendering per FHIR-I decision
* Fix broken links in extension references done by [[[]]]
* Fix broken links in code system rendering of parents
* Support using names in [[[markdown]]] when rendering
* Remove "profile" from tx operations
* Include checkIPSCodes and bundleValidationRules in json
***NO_CI***
2023-10-31 15:51:40 +00:00
dotasek 7386b2b8f8
Include checkIPSCodes and bundleValidationRules in json (#1473)
+ gentle renaming
2023-10-31 09:49:37 -04:00
Grahame Grieve 89fc407479 fix 2023-10-31 17:00:59 +11:00
Grahame Grieve 034b1057e6 CDA templates with no extension value use urn:oid: not urn:hl7ii: 2023-10-28 06:38:16 +11:00
Grahame Grieve a327f0312e code clean up 2023-10-28 06:35:20 +11:00
markiantorno b60d9e4f81 Updating version to: 6.2.1-SNAPSHOT and incrementing test cases dependency. 2023-10-24 23:01:44 +00:00
markiantorno 7c3863c6ad Release: v6.2.0
## Validator Changes

* Validation by templateId for CDA
* Fix NPE validating concept maps
* Update ViewDefinition validator for change (alias -> name)
* Fix for NPE validating sql-on-fhir ViewDefinition
* Fix for index out of bounds error when extension uses itself
* Fix issue where .resolve() in FHIRPath didn't work with URL values (and fix typo in i18n system)
* Implement FHIRPath slice() function in validator
* Fix bug where Snapshot generation can run off the end of the differential

## Other code changes

* Breaking API Change: Revise FHIRPath API so hosts can evaluate expressions in custom functions
* Add package use tracking to FHIR cache for validator.fhir.org
* Support for instance-name and instance-description in IG publisher
* Element.removeExtension (support for instance-name and instance-description extensions in IG publisher)
* Split terminology service tests
* Hack for wrong URLs in subscriptions backport
* Remove dependencies for unused UI experiment
* More improvements to profile code generation
***NO_CI***
2023-10-24 22:34:10 +00:00
Grahame Grieve e2ac0c56c7 bump minor version correctly 2023-10-25 08:20:34 +11:00
Grahame Grieve e431770caf
2023 10 gg code gen (#1469)
* Revise FHIRPath API so hosts can evaluate expressions in custom functions

* Implement slice() function in validator

* more improvements to profile generation

* Fix issue where .resolve() in FHIRPath didn't work with URL values (and fix typo in i18n system)

* release notes

* Fix test ignore/exclude issues, bump test cases

---------

Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
Co-authored-by: dotasek <david.otasek@smilecdr.com>
2023-10-24 15:26:24 -04:00
Grahame Grieve e06fee93c2 release notes 2023-10-21 06:44:08 +11:00
Grahame Grieve 2f8a5a071e validation by templateId for CDA 2023-10-20 21:30:25 +11:00
Grahame Grieve 2e71297478 fix NPE validating concept maps 2023-10-20 16:31:09 +11:00
Grahame Grieve 6066de7784 split terminology service tests 2023-10-20 16:30:47 +11:00
markiantorno 87b756e0c7 Updating version to: 6.1.17-SNAPSHOT and incrementing test cases dependency. 2023-10-16 22:48:30 +00:00
markiantorno b9338024a6 Release: v6.1.16
## Validator Changes

* Fix bug processing value sets containing URLs

## Other code changes

* Add initial support for http://hl7.org/fhir/tools/StructureDefinition/type-profile-style
* More work on sql-on-fhir implementation
* Allow for type parameter to custom functions in FHIRPath
* Fix bugs in processing current packages for XIG
***NO_CI***
2023-10-16 22:19:52 +00:00
Grahame Grieve 1e98e69338 more work on sql-on-fhir implementation 2023-10-16 23:12:15 +11:00
markiantorno a31120f15f Updating version to: 6.1.16-SNAPSHOT and incrementing test cases dependency. 2023-10-13 16:03:08 +00:00
markiantorno 17b7528c0f Release: v6.1.15
## Validator Changes

* Support for CDA code validation

## Other code changes

* Update XML Parser & logical model renderer for XML choice groups
* Restore JSON Parser method for HAPI compatibility.
* Maintain OID to URL lookup index
* Fix json parsing of CDA
***NO_CI***
2023-10-13 15:36:00 +00:00
Grahame Grieve 9d742dcd24 rework OID handling 2023-10-13 10:27:53 +11:00
Grahame Grieve 3d039a89eb get tests passing 2023-10-12 21:50:39 +11:00
Grahame Grieve 84e3bec25f more XML checking for CDA + control over date rules 2023-10-12 20:15:16 +11:00
Grahame Grieve 1207e32e20 Support for CDA code validation 2023-10-12 12:54:25 +11:00
markiantorno 65161437cb Updating version to: 6.1.15-SNAPSHOT and incrementing test cases dependency. 2023-10-10 10:28:06 +00:00
markiantorno faf0e0684c Release: v6.1.14
## Validator Changes

* Make sure logical models get a snapshot generated

## Other code changes

* Fix URL of concept map extension in version conversion
***NO_CI***
2023-10-10 10:01:13 +00:00
Grahame Grieve 2cc40452d7 make sure logical models get a snapshot generated 2023-10-10 15:43:09 +11:00
markiantorno 5f96bcd35d Updating version to: 6.1.14-SNAPSHOT and incrementing test cases dependency. 2023-10-09 19:09:40 +00:00
markiantorno 2d5efc33d1 Release: v6.1.13
## Validator Changes

* Improve language on constraint error message + add expression checking for SQL on FHIR project

## Other code changes

* Fix uuid() executing StructureMaps and don't throw errors processing StructureMaps
* Add support for test folder in NPM packages
* Fix rendering of XML Attributes in profiles
* Add support for hosts to manage certificate resolution using ISignatureServices + fix issue matching type names when validating logical models
* Make sure snapshots are generated when fetching types
* Workaround issue where R5 build wrongly adds ele-1 to base
* Fix conversion issue associated with ConceptMap.element.target.equivalence in versions previous to R5 (use proper extension URL, and move extension so it can be a modifier. And fix for modifierExtension handling)
* Fix birthDate editing in CmdLineApp
***NO_CI***
2023-10-09 18:43:48 +00:00
Grahame Grieve 9da31ae8ad improve language on constraint error message + add expression checking for SQL on FHIR project 2023-10-09 17:46:33 +11:00
Grahame Grieve af0f9bc765 Add support for hosts to manage certificate resolution using ISignatureServices + fix issue matching type names when validating logical models 2023-10-09 17:45:38 +11:00
markiantorno 9ec1c68cfc Updating version to: 6.1.13-SNAPSHOT and incrementing test cases dependency. 2023-10-05 02:20:25 +00:00
markiantorno d705905c8c Release: v6.1.12
## Validator Changes

* fix CDA parsing error for sdtc:raceCode
* fix xml output to deal with namespaces properly
* fix FHIRPath join implementation to make separator parameter optional

## Other code changes

* Improve rendering for xml_no_order extension
* add command line demo app
* rework xig into 3 steps
* add userData to JSON element
* Initial SQL On FHIR implementation
* Add getDistalNames() to FHIRPath for SQL-on-FHIR support
***NO_CI***
2023-10-05 01:50:02 +00:00
Grahame Grieve 752ab7a3d1
2023 10 gg cda parsing fix 2 (#1451)
* fix xml output to deal with namespaces properly

* Improve rendering or xml_no_order

* add command line demo app

* fix CDA parsing error for sdtc:raceCode

* Fix error message

* Bump test case version

---------

Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
Co-authored-by: dotasek <dotasek.dev@gmail.com>
2023-10-04 18:42:29 -04:00
Grahame Grieve 7698ee4b7f
Merge pull request #1443 from hapifhir/do-20230921-shc-validation-service
SHC Validation
2023-10-04 06:01:07 +03:00
markiantorno 627e40934b Updating version to: 6.1.12-SNAPSHOT and incrementing test cases dependency. 2023-10-02 13:18:11 +00:00
markiantorno 9b5c26be25 Release: v6.1.11
## Validator Changes

* Fix FHIRPath type resolution for logical models
* Update parsers to record the element format for logical model validation
* fix profile matching for CDA logical models

## Other code changes

* Upgrade PackageVisitor for XIG
***NO_CI***
2023-09-30 18:21:42 +00:00
Grahame Grieve c2aa221c98 fix profile matching for CDA logical models 2023-09-30 22:30:20 +10:00
Grahame Grieve d675d9d4a0 upgrade PackageVisitor for XIG 2023-09-30 22:28:44 +10:00
dotasek 2a6538cd02 Merge remote-tracking branch 'origin/master' into do-20230921-shc-validation-service 2023-09-29 11:00:19 -04:00
markiantorno f9b3dbde57 Updating version to: 6.1.11-SNAPSHOT and incrementing test cases dependency. 2023-09-29 11:11:34 +00:00
markiantorno ddd3889268 Release: v6.1.10
## Validator Changes

* Change Mapping type validation error to warning validating maps
* Add support for special case codes in v2 (NNnnn)
* Fix problem parsing logical model cda fragments
* Fix parsing logical model list attributes
* Fix issue parsing parameters in a target expression

## Other code changes

* Handle additional bindings when generating snapshots for R5 profiles
* Fix problem rendering additional bindings in R5
* Fix for new pubpack version
***NO_CI***
2023-09-29 10:45:20 +00:00
Grahame Grieve 0d4e1af1a6
Merge pull request #1447 from hapifhir/2023-09-gg-cda-fixes
2023 09 gg cda fixes
2023-09-29 19:23:05 +10:00
Grahame Grieve 6fa4bb1061 change error to warning validating maps 2023-09-29 13:38:05 +10:00
dotasek 7548ea37ae Merge remote-tracking branch 'origin/master' into do-20230921-shc-validation-service 2023-09-28 15:19:02 -04:00
markiantorno 90d683907d Updating version to: 6.1.10-SNAPSHOT and incrementing test cases dependency. 2023-09-27 16:01:56 +00:00
markiantorno b276d8a793 Release: v6.1.9
## Validator Changes

* Fix for issue parsing SHC and not recording line/col correctly
* Fix issue validating CDA FHIR Path constraints
* Better error handling validating codes in concept maps
* Validate special resource rules on contained resources and Bundle entries
* Improved error messages of observation bp
* Fix up WG internal model for changes to workgroups
* fix misleading error message inferring system when filters in play
* Fix type handling for logical models (CDA fixes)
* Fix up parsing of logical models
* Fix bug parsing extension with no value in JSON for the validator

## Other code changes

* Major uplift of PEModel to support generated code for profiles in R4 + R5
* Add removeChild in R4/R4B/R5 model
* Fix version conversion issue between r4 and r5 charge definition issue
* Fix rendering extension and missed profile on Reference()
***NO_CI***
2023-09-27 15:35:08 +00:00
dotasek c0f61dac17 Merge branch 'master' into do-20230921-shc-validation-service 2023-09-27 10:16:06 -04:00
Grahame Grieve 79b45832e4 Fix timezone issue in PE tests 2023-09-27 09:06:04 +10:00
dotasek d850944057 WIP track derived content for ValidatedFragment 2023-09-26 16:46:22 -04:00
Grahame Grieve 527b2cb35b Fix issue validating CDA FHIR Path constraints 2023-09-27 05:51:46 +10:00
Grahame Grieve 72a6b50cf2 better error handling validating concept maps 2023-09-25 13:50:16 +10:00
Grahame Grieve 194e2113ce Valid special cases on contained resources and Bundle entries 2023-09-25 13:50:02 +10:00
markiantorno 7d4816f628 Updating version to: 6.1.9-SNAPSHOT and incrementing test cases dependency. 2023-09-21 19:51:51 +00:00
markiantorno 8413995d8b Release: v6.1.8
## Validator Changes

* no changes

## Other code changes

* Fix typo in CodeSystem renderer fixed string
***NO_CI***
2023-09-21 19:24:42 +00:00
dotasek ba8a4797e5 If fileType is null, use ResourceChecker 2023-09-21 13:15:42 -04:00
dotasek ef6f92a21e WIP return validation fragments 2023-09-21 09:50:08 -04:00
markiantorno 14e6f210e6 Updating version to: 6.1.8-SNAPSHOT and incrementing test cases dependency. 2023-09-21 06:36:25 +00:00
markiantorno 23a0bc3f14 Release: v6.1.7
## Validator Changes

* Significant Performance improvements parsing JSON resources
* Refactor Type handling for faster performance
* Validate the stated publisher/WG/contacts for HL7 published resources
* Better error message when diff contains bad paths
* pass dependent resources to server and make sure cache-id is filled out properly in all contexts
* Fix error in FML parser parsing parameters
* Fix issue with dom-6 and contained elements (Internal ChildMap synchro issues)
* Better handling of errors from tx.fhir.org
* Fix bug checking for implicit value sets
* Fix bug checking of mixing snomed display types
* Reduce size of validatable concept map to 500 - for now + better handling of errors on server batches
* Improve UCUM validation BP rule

## Other code changes

* Fix up handling of includes in liquid templates
* Fix up rendering of profile names for abstract profile instantiations
* Improved rendering of codes in include when rendering valuesets
* Start generating .index.db as well as .index.json in packages for faster package reading
* Fix problem caching look up of implied value sets
* Add okio dependency for running vsac
***NO_CI***
2023-09-21 06:06:01 +00:00
Grahame Grieve 31ea68f69b Fix bug checking for implicit value sets 2023-09-21 12:42:36 +10:00
Grahame Grieve 9ef82e7e23 Fix bug checking of mixing snomed display types 2023-09-21 12:42:18 +10:00
Grahame Grieve 66b69deb37 reduce size of validatable concept map - for now 2023-09-21 12:41:55 +10:00
Grahame Grieve 6f17713ae8 Improve UCUM validation BP rule 2023-09-21 12:41:23 +10:00
Grahame Grieve a6f43420d5 publication WG checking not for example resources 2023-09-20 16:58:17 +10:00
Grahame Grieve eecc6633d3 Improved rendering of codes in include when rendering valuesets 2023-09-20 11:12:50 +10:00
Grahame Grieve 91abf50cdc Fix issue with dom-6 and contained elements 2023-09-20 11:11:05 +10:00
Grahame Grieve 46c12d1a22 Performance improvements for type handling, and rename NamedElement to ValidatedFragment 2023-09-19 09:58:36 +10:00
Grahame Grieve 4d2868f21e Add support for validating WG info in HL7 resources 2023-09-15 22:01:30 -07:00
markiantorno a68ba66d1a Updating version to: 6.1.7-SNAPSHOT and incrementing test cases dependency. 2023-09-15 22:58:19 +00:00
markiantorno 43e73b1281 Release: v6.1.6
## Validator Changes

* Add R4B binding-definition URL to validator exception list
* Correct validation when CodeSystem.content = example and server doesn't know code system
* Fix bug processing CDA snapshots
* Fix issue evaluating FHIRPath correctness on CDA.Observation
* Improve error message from validator when invariants fail
* Fix NPE validating concept maps
* Add parameter for easy CDA validation
* Suppress wrong invariants on compiler magic types
* fix NPE checking codes

## Other code changes

* Improve CodeSystem rendering - make parent property a link
* Add file tracking when npm package performing file unpacking
* Remove env variables from path builder
* Fix bug in version comparison
* fix for NPE in HAPI
* Performance improvements for IG Publisher
* Start working on cross-version extensions
* Improve rendering of message about logical target
***NO_CI***
2023-09-15 22:32:55 +00:00
Grahame Grieve 65ea3ddf95 Merge remote-tracking branch 'origin/master' 2023-09-15 13:13:40 -07:00
Grahame Grieve 1b65cb5ca2 Suppress wrong invariants on compiler magic types 2023-09-15 12:47:15 -07:00
Grahame Grieve 96ce441f9a more IG publisher efficiency work 2023-09-15 10:15:04 -07:00
Grahame Grieve c6b7a4f47d start working on cross-version extensions 2023-09-15 10:14:43 -07:00
Grahame Grieve f90308d7d3 easy CDA validation 2023-09-15 10:14:23 -07:00
Grahame Grieve a620e2aa30 fix NPE validating concept maps 2023-09-15 10:14:06 -07:00
Grahame Grieve a59a9619d9 Improve error message from validator when invariants fail 2023-09-15 10:13:02 -07:00
Grahame Grieve a6b6a9d330 Add R4B binding-definition URL to validator exception list 2023-09-12 15:48:22 -07:00
markiantorno a8967b378f Updating version to: 6.1.6-SNAPSHOT and incrementing test cases dependency. 2023-09-11 01:26:15 +00:00
markiantorno a09216c6e8 Release: v6.1.5
## Validator Changes

* no changes

## Other code changes

* Add baseUrl and version methods to r5 CanonicalType
***NO_CI***
2023-09-11 01:00:01 +00:00
markiantorno 30ed1bf615 Updating version to: 6.1.5-SNAPSHOT and incrementing test cases dependency. 2023-09-10 01:22:26 +00:00
markiantorno 1c24341056 Release: v6.1.4
## Validator Changes

* Fix bug preventing Best Practice invariants being reported on, and add -best-practice parameter
* Fix issue not validating bundles when there are multiple profiles on entry.resource
* Add Japanese translations

## Other code changes

* Fixes for minor bugs discovered testing the XIG
* fix package program data path
***NO_CI***
2023-09-10 00:51:54 +00:00
Grahame Grieve 6b38a730e9 SHC signature verification 2023-09-08 07:35:11 +10:00
Grahame Grieve 304fa3f493 Adjust tests for best-practice flag 2023-09-08 04:21:14 +10:00
Grahame Grieve c610e7a8b5 Make Best Practice Recommendations work properly 2023-09-07 22:01:13 +10:00
Grahame Grieve a061db8f01 Fix issue not validating bundles when there are multiple profiles on entry.resource 2023-09-07 17:07:09 +10:00