4735d99114
stability fixes
2022-03-29 11:17:01 +11:00
86b714bb7b
Pass -debug param to default logger + add logger to context builders
2022-03-25 13:38:24 -04:00
35f5b96eb7
Use SystemOutLoggingService for logging
2022-03-24 17:33:27 -04:00
25d9439fa9
Fix null exception for debug messages in BaseWorkerContext
2022-03-23 14:11:26 -04:00
6e45dd522e
Merge remote-tracking branch 'origin/master' into dotasek-primitivetype-conversion-via-stringvalue
2022-03-18 14:09:12 -04:00
b075c5695f
Updating version to: 5.6.40-SNAPSHOT and incrementing test cases dependency.
2022-03-18 04:05:44 +00:00
e053d5a260
Release: v5.6.39
...
## Validator Changes
* no changes
* Add messageid to OperationOutcome from Validation
* Add support for new rules around value set interpretation with multiple imported value sets (https://jira.hl7.org/browse/FHIR-25179 )
## Other code changes
* Fix for FHIRPathEngine.funcReplaceMatches() incorrectly returning Boolean in DSTU2 & DSTU3
* Fix NPE Processing missing markdown in definitions when generating snapshots
* add support for .matchesFull() and fix .matches() in FHIRPath
* Fix core package identification when loading new R5 core packages
***NO_CI***
2022-03-18 03:46:59 +00:00
48d87a2075
Merge branch 'master' into gg-202203-misc
2022-03-18 12:54:53 +11:00
cf95c1a2ba
Fix for Jira 25179 - change handling of imports
...
See https://chat.fhir.org/#narrow/stream/179202-terminology/topic/ValueSet.20defined.20by.20an.20intersection.20.3F
2022-03-18 12:45:40 +11:00
d0feacaaa8
Add tests and changes for Decimal
2022-03-17 15:41:07 -04:00
b5b43836eb
Add tests and changes for Base64Binary
2022-03-16 12:20:58 -04:00
9903d15ecc
Add tests for setValueAsString and contructor precision checking
2022-03-15 17:47:23 -04:00
def7d5566a
Surface message id in OperationOutcome from validator
2022-03-16 08:30:44 +11:00
5ae5e5d4c8
fix PatientRenderer
2022-03-16 08:30:25 +11:00
535a9cd9c9
fix FHIRPath matches() issue, and add support for matchesFull
2022-03-16 08:30:02 +11:00
dc84f94a17
fix NPE processing markdown
2022-03-16 08:29:19 +11:00
209a5e777b
Merge remote-tracking branch 'origin/master' into dotasek-primitivetype-conversion-via-stringvalue
2022-03-15 12:36:09 -04:00
4068db73ff
WIP Add tests for Primitive Types + use getValueAsString for conversion
2022-03-15 12:35:50 -04:00
8f5db15937
Updating version to: 5.6.39-SNAPSHOT and incrementing test cases dependency.
2022-03-14 21:48:39 +00:00
9ad69aca53
Release: v5.6.38
...
## Validator Changes
* no changes
## Other code changes
* Fix for FHIRPathEngine.funcReplaceMatches() incorrectly returning Boolean in DSTU2 & DSTU3
***NO_CI***
2022-03-14 21:32:32 +00:00
79d6c7034d
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir
2022-03-15 06:45:18 +11:00
e8e6337b7c
preserve message id in operation outcome
2022-03-15 06:44:10 +11:00
4c82c9c738
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into Branch_685ea98d
2022-03-11 11:21:55 -07:00
a6faece71b
Added R4B releases to the R4<->R5 conversion process
...
Corrected release number for R4B to be 4.3xxx rather than 4.1xxx
2022-03-11 11:16:04 -07:00
e4ce145a0b
Updating version to: 5.6.38-SNAPSHOT and incrementing test cases dependency.
2022-03-11 03:21:07 +00:00
e86c9afc7a
Release: v5.6.37
...
## Validator Changes
* fix handling of xver extensions with choice sub-extensions
* validate consistency of extension modifier flag with extension use in a profile
## Other code changes
* more presenting extensions when rendering.
* Get package id from 'package' field when 'npm-package' unavailable
* Ignore META-INF contents from other dependencies while building Validator jar
* Fix to r5 TestingUtilities to allow NarrativeGenerationTests to pass.
* fix handling to xver extensions generating snapshots
***NO_CI***
2022-03-11 03:04:43 +00:00
d23c319a90
Merge branch 'master' into gg-202203-vs-system
2022-03-11 11:30:07 +11:00
a3e8fca51a
Merge pull request #759 from hapifhir/R4B-datatypes-and-xml-cleanup
...
R4 b datatypes and xml cleanup
2022-03-11 10:53:52 +11:00
0b3ccbbe37
Reverted lower-casing of version comparison
2022-03-10 16:48:41 -07:00
6b3d7d4eaa
infer system when value set has includes
2022-03-11 10:37:10 +11:00
56c52ab7dd
make fhir version code case independent
2022-03-11 10:34:18 +11:00
791f16a05d
fix failing tests.
2022-03-10 11:18:03 +11:00
33f6c57d48
fix NPE
2022-03-10 06:52:44 +11:00
89b912dde2
Fix cross version extension validation, and check that extensions are consistent wrt isModifier in profiles
2022-03-09 17:37:26 +11:00
d7754a321f
Fix snapshot generation - always populate constraint source properly
2022-03-09 17:36:39 +11:00
2ff53e9bf1
merge
...
# Conflicts:
# RELEASE_NOTES.md
2022-03-08 13:25:16 +11:00
478663cdf8
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into R4B-datatypes-and-xml-cleanup
2022-03-07 19:20:19 -07:00
cc983073cd
more cross version extensions
2022-03-08 13:19:19 +11:00
32c2ad96b7
Merge pull request #755 from hapifhir/gg-202203-extensions
...
Gg 202203 extensions
2022-03-08 09:39:54 +11:00
074da98066
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into R4B-datatypes-and-xml-cleanup
...
# Conflicts:
# org.hl7.fhir.r5/src/main/java/org/hl7/fhir/r5/model/Enumerations.java
2022-03-04 22:01:48 -07:00
9f01f7c9f2
Per FHIR-31722 and FHIR-34453, ensure that CodeableReference and RatioRange aren't allowed in extensions Parameters, etc. in R4B
2022-03-04 21:58:17 -07:00
ca91cfad1a
When running in Eclipse, the version comes in as upper-case, and the enum comparison needs it to be lower-case, so fold it to be that way.
2022-03-04 21:56:27 -07:00
6f57013f98
Fix intermittent failures in NarrativeGenerationTests
2022-03-03 16:19:39 -05:00
38e84a46f2
Merge pull request #750 from cqframework/master
...
Fix include resolution in LiquidRenderer
2022-03-03 07:46:12 +11:00
64aed90f1e
fix handling of xver extensions with choice sub-extensions
2022-03-03 07:43:43 +11:00
4f652bceee
more presenting extensions when rendering.
2022-03-03 07:43:09 +11:00
862c8de664
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir
2022-03-01 11:38:53 +11:00
4909286a4b
Updating version to: 5.6.37-SNAPSHOT and incrementing test cases dependency.
2022-02-26 05:00:46 +00:00
17bf21ecf8
Release: v5.6.36
...
## Validator Changes
* No changes
## Other code changes
* fix expansions where inactive = false (was wrongly including inactive codes)
***NO_CI***
2022-02-26 04:42:17 +00:00
23fe900624
Merge branch 'gg-202202-various' of https://github.com/hapifhir/org.hl7.fhir
2022-02-26 08:09:27 +11:00
df89ca1df3
remdering work
2022-02-26 08:09:15 +11:00
6975397675
Fix breaking SimpleWorkerContextTests
2022-02-25 15:36:04 -05:00
a5060d9475
fix failing JUnit test
2022-02-26 06:42:43 +11:00
c918f724ee
fix problem missing profiles on references in discriminators
2022-02-26 06:22:42 +11:00
f32895da67
Fix ValueSet presentation
2022-02-26 06:21:14 +11:00
c5b3e022a4
fix bug where inactive codes always put in expansions, and add unit tests for this
2022-02-25 13:07:07 +11:00
778738d3ac
Fix constructor argument
2022-02-23 20:20:38 -07:00
8212604250
Fix missing argument
2022-02-23 20:09:17 -07:00
5544460d20
Added documentation
2022-02-23 19:44:21 -07:00
ab329c8c63
Added a Liquid template resolver to narrative generation to support include resolution in the publisher
2022-02-21 15:05:42 -07:00
9e693b6a03
Updating version to: 5.6.36-SNAPSHOT and incrementing test cases dependency.
2022-02-19 22:00:05 +00:00
685ea98d37
Release: v5.6.35
...
## Validator Changes
* no changes
## Other code changes
* fix various rendering issues from core spec
***NO_CI***
2022-02-19 21:28:34 +00:00
905f8a7197
Merge pull request #746 from lmckenzi/Suppress-ignoring-ignore-messages
...
When you have a dependency on the R4 examples package, you get 100s o…
2022-02-20 08:00:04 +11:00
98ba40748e
Follow content reference when rendering XML resources
2022-02-19 21:46:05 +11:00
a1912cd423
fix various rendering issues from core spec
2022-02-19 21:41:50 +11:00
4d26ca64fb
When you have a dependency on the R4 examples package, you get 100s of messages about every value set, profile, etc. that's being ignored. Changed this so it's only a debug log message rather than something that happens all the time.
2022-02-16 23:17:09 -07:00
c9b6ab4e64
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir
2022-02-17 02:07:00 +11:00
84f7133cf1
remove debugging statements
2022-02-17 02:05:02 +11:00
73baca035e
Updating version to: 5.6.35-SNAPSHOT and incrementing test cases dependency.
2022-02-16 05:52:52 +00:00
edd2c43e64
Release: v5.6.34
...
## Validator Changes
* Improve code validation error when value set can't be supported on tx.fhir.org
* Hide error about regex in core package
## Other code changes
* Fix wrong URL links in processed markdown
* Don't let txCache errors stop the process
* Fix broken links in questionnaire +
***NO_CI***
2022-02-16 05:32:34 +00:00
db19b0dd00
Fix broken links + remove error about regex in core package
2022-02-16 14:04:35 +11:00
647d3efcee
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir
2022-02-16 13:15:19 +11:00
0f1d9db24f
Fix wrong URL links + txCache errors + questionnaire rendering at root
2022-02-16 13:14:55 +11:00
1d02e04edd
Updating version to: 5.6.34-SNAPSHOT and incrementing test cases dependency.
2022-02-15 11:21:29 +00:00
fd36a5b0d2
Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir
2022-02-15 22:17:36 +11:00
c13193835e
Preserve code validation error
2022-02-15 22:17:08 +11:00
cf7415b33e
Release: v5.6.33
...
## Validator Changes
* no changes
## Other code changes
* Fix error access experimental on canonical
***NO_CI***
2022-02-15 11:00:55 +00:00
4983b0122c
Fix error accessing experimental on NamingSystem
2022-02-15 19:32:04 +11:00
e1613a7087
Updating version to: 5.6.33-SNAPSHOT and incrementing test cases dependency.
2022-02-14 06:57:10 +00:00
4a8aeda4e9
Release: v5.6.32
...
## Validator Changes
* no changes
## Other code changes
* Fix NPE error in Patient renderer
***NO_CI***
2022-02-14 06:25:49 +00:00
d91f6a450b
Fix Patient Renderer
2022-02-14 16:23:22 +11:00
4ab3fea400
Updating version to: 5.6.32-SNAPSHOT and incrementing test cases dependency.
2022-02-14 01:27:51 +00:00
04bb17783e
Release: v5.6.31
...
## Validator Changes
* accept regex on ElementDefinition and ElementDefinition.type, and an error for regex on ElementDefintion.type (though core packages have it on the wrong place)
* fix handling of cross-version extensions on choice elements
* fix OID validation (accept 1.3.88 GTIN OID)
* only consider bindable types when checking for multi-type bindings
## Other code changes
* Fix definitions in ListResource ("List" not "ListResource")
* introduce fhir-tools-settings.conf (see https://confluence.hl7.org/display/FHIR/Using+fhir-tool-settings.conf )
* Rendering fixes & improvements for Questionnaire and Patient and partial dates
* improvements to relative link handling in markdown when generating snapshots
* updates to package tools for changes to package.json#type (see https://confluence.hl7.org/pages/viewpage.action?pageId=35718629#NPMPackageSpecification-Packagemanifest )
* fix semver handling for tags in versions
* Bump mockito and bytebuddy versions for Java 17 compatibility & fix Kotlin ref
***NO_CI***
2022-02-14 01:08:37 +00:00
6310b1158e
#722 fix ListResource name misuse
2022-02-13 08:29:01 +11:00
b861ca4744
clean up
2022-02-12 09:07:07 +11:00
7700a0cb11
missed rendering fix
2022-02-12 08:29:00 +11:00
e4d886dfec
Fix handling of cross version extensions on choice types
2022-02-12 08:27:56 +11:00
fb1a08dca8
Rendering improvements: partial dates, questionnaire links, and patient renderer
2022-02-12 08:27:29 +11:00
76ed4abba7
Changes for debugging on OSX (fhir-tools-settings.conf)
2022-02-12 07:55:59 +11:00
0fa757b426
Fix markdown relative link issues + start working on additional bindings extension
2022-02-12 07:53:23 +11:00
b49e791cd1
Updates for changes to package.json type
2022-02-11 09:36:47 +11:00
045299ae7a
Updating version to: 5.6.31-SNAPSHOT and incrementing test cases dependency.
2022-02-07 15:56:51 +00:00
7ee476a9b6
Release: v5.6.30
...
## Validator Changes
* no changes
## Other code changes
* Use builders for SimpleWorkerContext and ValidationEngine to enforce initialization order for caches and capabilities
***NO_CI***
2022-02-07 15:07:54 +00:00
0e3e410ea1
Merge branch 'master' into simpleworkercontextbuilder
2022-02-04 09:50:42 -05:00
703f907289
Updating version to: 5.6.30-SNAPSHOT and incrementing test cases dependency.
2022-02-03 23:15:06 +00:00
9a89045bac
Release: v5.6.29
...
## Validator Changes
* no changes
## Other code changes
* Fix package location for CacheVerificationLogger
***NO_CI***
2022-02-03 22:42:27 +00:00
e0bdbda5b7
Fix package location for CacheVerificationLogger
2022-02-03 16:35:26 -05:00
239c436ca5
Code cleanup
2022-02-02 10:07:13 -05:00
847ede5f88
Refactor SimpleWorkerContext and ValidationEngine
2022-02-01 15:28:19 -05:00
5092be9a1d
Clean txCache + update CacheVerificationLogger output
2022-02-01 10:09:23 -05:00
c41fcf9fa9
Updating version to: 5.6.29-SNAPSHOT and incrementing test cases dependency.
2022-02-01 02:57:54 +00:00
fe073b6a8a
Release: v5.6.28
...
## Validator Changes
* no changes
* Add ability to [compile a map file to a StructureDefinition](https://confluence.hl7.org/display/FHIR/Using+the+FHIR+Mapping+Language#UsingtheFHIRMappingLanguage-runtransformsjavavalidator )
* Add knowledge of additional R5 extensions for StructureDefinitions
* Fix problem validating extension context on choice types
* Add hint when binding found on element with multiple types
* Fix validator to guess system on all uses of code (not just most)
## Other code changes
* Use cached terminology server responses for unit and integration tests.
* Add more HTTP logging
* Clean up various issues with graphQL and polymorphic elements
* Add better support for date/time rendering
* Significant speed improvement for terminology caching
***NO_CI***
2022-02-01 02:36:54 +00:00
96538ba249
Merge pull request #704 from lmckenzi/Add_map_compile
...
Add map compile
2022-02-01 11:50:41 +11:00
cae92c8621
Merge pull request #727 from hapifhir/ja_20220130_graphql_cleanup
...
Updates to GraphQL
2022-02-01 11:49:10 +11:00
bac81752c8
merge and fix testing bugs
2022-02-01 10:20:56 +11:00
4c48d597a6
Merge pull request #721 from dotasek/tx-server-cache-analysis
...
TX Server Caching for Tests
2022-02-01 08:09:41 +11:00
180035d306
One more tweak
2022-01-30 18:37:22 -05:00
846866472b
Updates to GraphQL
2022-01-30 17:04:10 -05:00
1aa1e288ec
merge
2022-01-30 07:57:39 +11:00
3559bd6638
fix tests problems with date formats and java versions
2022-01-29 09:16:48 +11:00
7b24e9d4ee
Update FHIRPathEngine.java
...
As mentioned on https://github.com/hapifhir/org.hl7.fhir.core/issues/703
2022-01-28 20:44:39 +01:00
bd9d486846
Significant speed improvement for terminology cache
2022-01-29 06:06:20 +11:00
42f75dfee0
#703 - fix missing .guessSystem() in opMemberOf
2022-01-29 06:05:51 +11:00
fdc6e02b49
Don't log requests when rebuilding cache
2022-01-26 09:31:58 -05:00
39e30a10c4
Clean up comments
2022-01-26 09:28:19 -05:00
a41287a74d
Additional logging for requests in test
2022-01-25 18:02:16 -05:00
9ec63bc1b9
Test capability caching.
...
Just when I think I'm done...
2022-01-25 16:36:13 -05:00
7c58619528
Testing Part 7
2022-01-25 14:43:13 -05:00
38728f2c82
Testing part 6
2022-01-25 10:48:42 -05:00
b5e9a7aa1e
Testing Part 5
2022-01-24 18:16:10 -05:00
1715574a7e
Testing Part 4
2022-01-24 17:00:17 -05:00
33cdfffa55
More consistent version management in TerminologyCache
2022-01-23 13:21:40 -05:00
97c11a9be0
Testing Part 3
2022-01-23 12:06:44 -05:00
09ddd964ff
Merge remote-tracking branch 'origin/master' into tx-server-cache-analysis
2022-01-21 17:39:51 -05:00
6416ccce36
Testing Part 2
2022-01-21 17:39:43 -05:00
f69a30421f
Updating version to: 5.6.28-SNAPSHOT and incrementing test cases dependency.
2022-01-21 21:43:26 +00:00
90008b7744
Release: v5.6.27
...
## Validator Changes
* no changes
## Other code changes
* Fix unnecessary JsonParser/XmlParser class load
***NO_CI***
2022-01-21 21:12:00 +00:00
f9561f2685
Testing Part 1
2022-01-21 15:29:17 -05:00
315604759c
Another attempt to avoid parser classload
2022-01-21 14:59:50 -05:00
8818acfbf8
Updating version to: 5.6.27-SNAPSHOT and incrementing test cases dependency.
2022-01-21 16:20:40 +00:00
b82cc42663
Release: v5.6.26
...
## Validator Changes
* no changes
## Other code changes
* Avoid unnecessary JsonParser/XmlParser class load
***NO_CI***
2022-01-21 16:02:59 +00:00
7d8569e9e7
Test that no requests are made for cached tests
2022-01-20 13:28:47 -05:00
4826424499
Make additional caches to cover NativeHostService and ValidationService
2022-01-19 18:36:39 -05:00
0a3e9d3f31
Merge branch 'master' into tx-server-cache-analysis
2022-01-18 16:10:21 -05:00
d9d0f22ff3
cache CapabilityStatement and TerminologyCapabilities
2022-01-18 16:09:59 -05:00
0ed91721b0
One more revert
2022-01-18 06:16:18 -05:00
bc3759dc03
Roll back change
2022-01-18 06:16:18 -05:00
d3007ea73f
Cleanup
2022-01-18 06:16:18 -05:00
f902d1d273
Avoid reflection
2022-01-18 06:16:18 -05:00
942d4f15aa
Avoid unnecessary JsonParser/XmlParser class load
2022-01-18 06:16:18 -05:00
15fcc4607e
Updating version to: 5.6.26-SNAPSHOT and incrementing test cases dependency.
2022-01-17 22:42:22 +00:00
4b808f140c
Release: v5.6.25
...
## Validator Changes
* no changes
## Other code changes
* fix bug where generated packages have files in the wrong places
* fix inclusion of Java constants in CLI help text.
* fix bug on `-compile` output when using 'current' version.
***NO_CI***
2022-01-17 22:24:48 +00:00
06e690e54f
fix bug in package generator where files go in the wrong place
2022-01-18 07:30:12 +11:00
7823945213
Updating version to: 5.6.25-SNAPSHOT and incrementing test cases dependency.
2022-01-17 11:31:30 +00:00
c2bcb08855
Release: v5.6.24
...
## Validator Changes
* No changes to the validator
## Other code changes
* Improved rendering for value sets
***NO_CI***
2022-01-17 11:13:36 +00:00
c13c291949
more work on value set renderer (designations, expand-groups)
2022-01-17 10:51:48 +11:00
bd74bf3cee
Fix typos
2022-01-14 14:53:36 -05:00
f368b021e3
Updating version to: 5.6.24-SNAPSHOT and incrementing test cases dependency.
2022-01-14 04:30:14 +00:00
a536ceba7f
Release: v5.6.23
...
## Validator
* changes to profile comparison based on discussion at Jan 2022 connectathon
* fix FHIRPath handling for incomplete FHIRPath expressions
## Other code changes
* fix markdown related dependencies
* fix NPE in Utilities.pathURL()
* fix logging problem in tx server logging
* fix problem caching value sets during validation
* fix NPE setting locale based on canonical jurisdiction
* Improve rendering for Quantity/Range + return display when validating for rendering purposes
***NO_CI***
2022-01-14 03:58:44 +00:00
6e0b14b0b6
Merge branch 'master' into tx-server-cache-analysis
2022-01-13 09:46:45 -05:00
Grahame Grieve
dotasek
markiantorno
Grahame Grieve
Lloyd McKenzie
Bryn Rhodes
jamesagnew
Jens Kristian Villadsen