Commit Graph

651 Commits

Author SHA1 Message Date
markiantorno 4af3deff26 Updating version to: 6.3.26-SNAPSHOT and incrementing test cases dependency. 2024-09-11 18:28:22 +00:00
markiantorno f09bc48f7d Release: v6.3.25
## Validator Changes

* no changes

## Other code changes

* Fix logic for cache clearing on package cache initialization
***NO_CI***
2024-09-11 17:40:08 +00:00
markiantorno 2c8122a42e Updating version to: 6.3.25-SNAPSHOT and incrementing test cases dependency. 2024-09-09 19:09:24 +00:00
markiantorno 813f8200a2 Release: v6.3.24
## Validator Changes

* Fix expression for con-3 properly (fix validation problem on some condition resources)
* Fix FHIRPath bug using wrong type on simple elements when checking FHIRPath types
* FHIRPath: Allow _ in constant names (per FHIRPath spec)
* Fix value set rendering creating wrong references
* Fix bug processing value set includes / excludes that are just value sets (no system value)
* Alter processing of unknown code systems per discussion at ,https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/Don't.20error.20when.20you.20can't.20find.20code.20system and implement unknown-codesystems-cause-errors
* Improve message for when elements are out of order in profile differentials

## Other code changes

* fix problem where profile rendering had spurious 'slices for' nodes everywhere
* Update SQL-On-FHIR implementation for latest cases, and clone test cases to general test care repository
* Fix problem generating value set spreadsheets
* fix concurrent modification error processing language translations
* Check for null fetcher processing ConceptMaps (#1728)
***NO_CI***
2024-09-09 18:23:37 +00:00
dotasek 385b40cd4e
Update staging plugin (#1730) 2024-08-30 13:36:13 -04:00
markiantorno 19c8b17575 Updating version to: 6.3.24-SNAPSHOT and incrementing test cases dependency. 2024-08-28 18:45:30 +00:00
markiantorno 2721ebb8c6 Release: v6.3.23
## Validator Changes

* no changes

## Other code changes

* Set fhir-test-cases to release 1.5.20
***NO_CI***
2024-08-28 17:59:21 +00:00
markiantorno 1e5cb4da49 Updating version to: 6.3.23-SNAPSHOT and incrementing test cases dependency. 2024-08-27 21:23:55 +00:00
markiantorno 0bdba83faf Release: v6.3.22
## Validator Changes

* no changes

## Other code changes

* BugFix: Restore loadFromFolder method in FilesystemPackageCacheManager
***NO_CI***
2024-08-27 20:30:39 +00:00
markiantorno c172df802d Updating version to: 6.3.22-SNAPSHOT and incrementing test cases dependency. 2024-08-27 17:54:17 +00:00
markiantorno c92ee550c0 Release: v6.3.21
## Validator Changes

* Security Fix: Move all instantiation of transformerFactory to XMLUtils and set ACCESS_EXTERNAL flags automatically (slightly improvement to output message, but closes possible attack vector)
* Handle 308 redirects when fetching packages
* Fix NPE in ValueSetValidator
* Fix for NPE in IGLoader
* fix version conversion problem for ConceptMap (4<->5): relationship comment getting lost for noMap entries
* Add check for multiple WG extensions (HL7 context)

## Other code changes

* Suppress spurious logging statement
* Add Australian CDA name prefix & uri to mapping transform code
* Add new messages for tx.fhir.org
* Remove narrative from snapshot tests
* Improve complex extension rendering when rendering by profile
* Rewrite processing of map statements when generating snapshots to fix known bugs
* Updates to Capability Statement rendering (and minor Operation Definition rendering improvement)
* Fix wrong reference to CDA classes for unscoped class names
* fix rendering issue for R4 relationship codes in ConceptMap
* rework decimal lowBoundary() and highBoundary() after discussion on Zulip, and add extensive testing
* Fix existing test case for fixed up boundary handling in FHIRPath
* Add CodeSystem fetching for selected code systems for VSAC import
* Drop to saxon 11.6 for now
* fix issue with json unicode whitespace enscaping
* get Java generator running again (though no code regenerated)
* don't escape unicode whitespace in json files
* Fix NPE in questionnaire renderer
* Hack workaround for R4 issue with ProcessPriority
* Rewrite concurrency management for file system package cache
***NO_CI***
2024-08-27 16:42:13 +00:00
markiantorno fe2a8e6d11 Updating version to: 6.3.21-SNAPSHOT and incrementing test cases dependency. 2024-08-13 17:31:22 +00:00
markiantorno 1800948c7a Release: v6.3.20
## Validator Changes

* Improved handling of display validation for various languages
* fix xml:space message after discussion on Zulip

## Other code changes

* ValueSet rendering improvements
* Add isUnknownLocalReferencesNotLinks to RenderingContext
* Fix up conceptMap rendering (remove spurious summary table)
* Add R6 ballot 2 to FHIRVersion enum in R5
* rendering fixes for implementers
* improve rendering of bindings with no value sets
***NO_CI***
2024-08-13 16:46:00 +00:00
markiantorno e6e4efa540 Updating version to: 6.3.20-SNAPSHOT and incrementing test cases dependency. 2024-08-04 15:24:42 +00:00
markiantorno aac96cf897 Release: v6.3.19
## Validator Changes

* Improve performance of supplement processing
* Add support for validating xml:space
* Fix NPE validating maps
* Fix duplicate removal code that caused missed WARNING messages (#1698)
* Fix interaction between terminology cache and validation location  (#1700)
* Better concept map validation
* Improved base64 parsing error
* Add support for unknown code system version validating concept maps
* Fix bug using wrong profile when profiling recursive properties

## Other code changes

* Return null for all toCode enum params that are null
* fix bugs adding publishing WG in element mode
* Fix equality method that caused missed WARNING messages
* fix rendering issues
  * rendering fixes for R6 build
  * don't throw error for wrong rendering mode
  * Document rendering fixes - subject and section
  * more work on forcing valid html generation
  * more hyperlink validation improvements
  * further fixes to link validation
  * fix list inside paragraph
  * fix actor capabilities in wrong place
  * Support missing datatypes
  * Fill out missing anchors
  * Fix wrong handling of contained resources)
  * #1678 - add div to children when exploring Narrative
***NO_CI***
2024-08-04 14:35:44 +00:00
markiantorno 0b10290f0f Updating version to: 6.3.19-SNAPSHOT and incrementing test cases dependency. 2024-07-17 06:14:05 +00:00
markiantorno 5c3953cfdb Release: v6.3.18
## Validator Changes

* No Changes

## Other code changes

* Naming System fix for THO
* Fix issue with rendering OperationOutcomes that don't have 'detail'
* Fix problem with value set anchor generation when rendering
***NO_CI***
2024-07-17 05:22:26 +00:00
markiantorno 0722d728ae Updating version to: 6.3.18-SNAPSHOT and incrementing test cases dependency. 2024-07-16 18:20:14 +00:00
markiantorno cf2b25eb29 Release: v6.3.17
## Validator Changes

* work around THO 6.0.0 problem (hack, to be reversed later)
* Improve MeasureReport validation for checking subject count
* Fix for R2B Resource.id cardinality problem
* Fix for validator using wrong property for list determination when parsing json

## Other code changes

* no changes
***NO_CI***
2024-07-16 17:32:26 +00:00
markiantorno a09c712c87 Updating version to: 6.3.17-SNAPSHOT and incrementing test cases dependency. 2024-07-12 12:35:11 +00:00
markiantorno 26c6878c76 Release: v6.3.16
## Validator Changes

* Add clearer message for errors around unable to validate because unknown code system
* Fix problem with fhirVersion cardinality validating IG resources

## WHO I18n Project

* Remove Questionnaire.item.linkId from translatable content

## Other code changes

* Further revisions to rendering framework for id uniqueness, main spec rendering, and various reported issues
* Improve doco for R4/R4B renderers
* Introduce backwards compatible constructor in ValidationEngineBuilder and fix useEcosystem
* Use v2 of PublishCodeCoverageResults (#1665)
* #1583 do not serialize choice group + add testcase
***NO_CI***
2024-07-12 11:48:05 +00:00
markiantorno 115074ee60 Updating version to: 6.3.16-SNAPSHOT and incrementing test cases dependency. 2024-07-05 12:51:24 +00:00
markiantorno 409b0df34d Release: v6.3.15
## Validator Changes

* no changes

## Other code changes

* Fix broken link to definitions in profiles
***NO_CI***
2024-07-05 12:03:07 +00:00
markiantorno 59d0334e0e Updating version to: 6.3.15-SNAPSHOT and incrementing test cases dependency. 2024-07-04 03:22:56 +00:00
markiantorno 50ce6bb6ac Release: v6.3.14
## Validator Changes

* Add support for ND-JSON. Note that the validator is not expected to perform well on large ND-JSON files (or any other file type)
* Significant change: the validator was not checking for the end of the input when parsing a JSON resource finished. It will now start giving errors when JSON continues once the object is complete
* Add support for the create object syntax in FML when validating FML
* Improved error message when supplement url used instead of code system URL

## WHO Translation Project

* Add complete dutch translations (Thanks Alexander Henket)

## Other code changes

* Fix various rendering problems leading to non-unique html anchors
* Fix for unrendered data types
***NO_CI***
2024-07-04 02:33:38 +00:00
markiantorno 70ed025741 Updating version to: 6.3.14-SNAPSHOT and incrementing test cases dependency. 2024-06-28 01:14:27 +00:00
markiantorno b3628c7ccd Release: v6.3.13
## Validator Changes

* no changes

## Other code changes

* Rendering fixes
***NO_CI***
2024-06-28 00:27:59 +00:00
markiantorno 0736de9c2d Updating version to: 6.3.13-SNAPSHOT and incrementing test cases dependency. 2024-06-27 00:47:09 +00:00
markiantorno f14f2a42ad Release: v6.3.12
## Validator Changes

* Change how count is calculated when expanding value sets
* Fix value set expansion bugs
* Fix for fhirpath issue on command line (#1650)
* Add IG dependency validator
* work around bad r4 extension definitions
* don't reload different sub-version of extensions pack

## Other code changes

* Rework rendering library from ground up
  * Merge Fix: Fix split logic of canonical into url and version in several places (#1663)
  * Suppress spurious message when code system is unknown
  * don't raise needless and wrong exceptions about extension definitions when rendering
  * fix duplicate link creation
  * Stop recursive rendering crash
  * Obligation rendering improvements
* Handle extra profiles on resources in an IG when converting between versions
* Fixed issue with actor title not rendering in obligations
* Test and adaption for dateOp #1655
* Use assertj instead of hamcrest (#1662)
* More transifex work
* Add support for local packages during testing
***NO_CI***
2024-06-27 00:00:09 +00:00
markiantorno 03ea625a7c Updating version to: 6.3.12-SNAPSHOT and incrementing test cases dependency. 2024-06-07 03:25:47 +00:00
markiantorno 6ba8b38fc5 Release: v6.3.11
## Validator Changes

* Find value sets on tx server if not tx.fhir.org
* Do not send Content-Type header with GET requests for tx servers
* Fix npe validating code system
* Support discriminator by position
* Don't check type characteristics for unknown types

## WHO I18n Project

* Fix typos in phrases, and fix up handling of apostrophes in messages without parameters
* Test and fix for single quote escapes in I18n
* Create and test transifex configuration

## Rendering Changes

* Fix contact rendering to work properly
* Fix issue resolving contained resource rendering DiagnosticReports etc
* Handle case where Contact.value has extensions instead of a string value
* Render Parameterised types
* Fix bug with LOINC Code row showing wrongly in Profile Details view
* Partial implementation of type parameters
* Fixed rendering of actor-specific obligations, added elementIds to obligation narrative rendering
* Corrected ObligationsRenderer to handle multiple actors and multiple codes.  Also got obligations with elements to render properly (which means knowing whether you're on a table page or definitions page, what tab you're on, and whether the element for the obligation is in-scope for that tab (so you know whether to hyperlink or not).  Had to make links on the tables point to definitions because table anchors are not unique.

## Other code changes

* split out Base.canHavePrimitiveValue() from Base.hasPrimitiveValue()
* Refactor how observation profiles are registered in order to generalise management of extra profiles
  * Use validation policy to implement Observation profile rules
  * Rework validation policy management in standalone validator
* Try deploying javadoc with SNAPSHOT
* Add utility to unpack the spec.internals file
* v2 in FHIR tests
* Fix bug loading language pack NPMs
***NO_CI***
2024-06-07 02:33:16 +00:00
dotasek 93037baa9b Go back to SNAPSHOT
***NO_CI***
2024-06-06 21:58:57 -04:00
markiantorno d36d030076 Release: v6.3.11
## Validator Changes

* Find value sets on tx server if not tx.fhir.org
* Do not send Content-Type header with GET requests for tx servers
* Fix npe validating code system
* Support discriminator by position
* Don't check type characteristics for unknown types

## WHO I18n Project

* Fix typos in phrases, and fix up handling of apostrophes in messages without parameters
* Test and fix for single quote escapes in I18n
* Create and test transifex configuration

## Rendering Changes

* Fix contact rendering to work properly
* Fix issue resolving contained resource rendering DiagnosticReports etc
* Handle case where Contact.value has extensions instead of a string value
* Render Parameterised types
* Fix bug with LOINC Code row showing wrongly in Profile Details view
* Partial implementation of type parameters
* Fixed rendering of actor-specific obligations, added elementIds to obligation narrative rendering
* Corrected ObligationsRenderer to handle multiple actors and multiple codes.  Also got obligations with elements to render properly (which means knowing whether you're on a table page or definitions page, what tab you're on, and whether the element for the obligation is in-scope for that tab (so you know whether to hyperlink or not).  Had to make links on the tables point to definitions because table anchors are not unique.

## Other code changes

* split out Base.canHavePrimitiveValue() from Base.hasPrimitiveValue()
* Refactor how observation profiles are registered in order to generalise management of extra profiles
  * Use validation policy to implement Observation profile rules
  * Rework validation policy management in standalone validator
* Try deploying javadoc with SNAPSHOT
* Add utility to unpack the spec.internals file
* v2 in FHIR tests
* Fix bug loading language pack NPMs
***NO_CI***
2024-06-06 22:46:44 +00:00
markiantorno a32e28e4e3 Updating version to: 6.3.11-SNAPSHOT and incrementing test cases dependency. 2024-05-25 23:37:56 +00:00
markiantorno d8781b8b76 Release: v6.3.10
## Validator Changes

* Fix issue validating codes with + in them
* Fix (well, hack) R4 vital signs issue with component units

## WHO I18n Project

* QA on i18n constants - remove spurious entries, add anything missing
* Remove test case for i18n coverage
* Generate properties translation files without blank entries
* Add transifex configuration
* Fix up .po file generation so that POEdit is supported, and remove duplicate constants (#1592)
* Most strings translated to Dutch, unchecked.
* Add utility to infer locale from region code

## Other code changes

* Remove Accept-Charset header
* Fix typos around CODESYSTEM_CONTENT_COMPLETE
***NO_CI***
2024-05-25 22:53:24 +00:00
markiantorno 0d0687f1f1 Updating version to: 6.3.10-SNAPSHOT and incrementing test cases dependency. 2024-05-22 05:52:30 +00:00
markiantorno c47f248fa4 Release: v6.3.9
## Validator Changes

* remove "LOINC 2711-0 Oxygen saturation in Venous blood" from the list in the validator that checks whether an observation is a vital sign

## WHO I18n Project

* fix value set summary line display
* update the source of truth translation files

## Other code changes

* Handle more than one expectation extensions in CapabilityStatement
* Fix NPEs in Liquid renderer
***NO_CI***
2024-05-22 05:02:20 +00:00
markiantorno 1f6aaa1db3 Updating version to: 6.3.9-SNAPSHOT and incrementing test cases dependency. 2024-05-20 13:16:27 +00:00
markiantorno 5165942802 Release: v6.3.8
## Validator Changes

* Fix bug processing extension with explicit type slicing
* Fix wrong language code from java locale
* Don't accidently hit other terminology servers for code systems handled natively by tx.fhir.org
* Validate Additional Bindings (provisional - usage context is todo)
* Improved system specific checking of value set filters - particularly LOINC and SNOMED CT, and update LOINC validation to the latest understanding of LOINC filters

## WHO I18n Project

* Add importing translations to native resources
* Finish Migrating text phrases to i18n framework
* Fix bugs with loading translations (#1592)

## Security

* Move all network access to go through ManagedWebAccess
* More security documentation

## Other code changes

* Put jurisdiction in npm package.json
* Add testing ontoserver to test suite
* Fix NPE testing Ontoserver
* fix tx tester calling run ok when a filter is applied and tests fail
* Fix name of preferred when rendering AdditionalBindings
* Add AdditionalBinding version conversion in profiles
* Fix SNOWMED spelling
* Fix rendering of multiple imports in value sets
***NO_CI***
2024-05-20 12:30:29 +00:00
markiantorno 248b8b1ac8 Updating version to: 6.3.8-SNAPSHOT and incrementing test cases dependency. 2024-05-10 05:02:38 +00:00
markiantorno d81fc5d82d Release: v6.3.7
## Validator Changes

* Fix bug where some #refs are not resolved to the root of the resource in FHIRPath slicing evaluation
* Fix bug passing wrong type to tx server when using inferSystem
* Fix bug processing version of CodeSystem.supplements incorrectly
* Don't process wrong parent when processing snapshot of element with profiled type that is not reprofiled
* Fix typo in OID message
* Fix handling value set exclude filters
* Allow code system declared properties to be self-referential

## I18n changes

* More comprehensive internationalization phrase coverage reporting on project page
* Move many rendering phrases into i18n framework

## Rendering Changes

* Fix issue with unknown element rendering fixed value for Attachment
* Fix bug calculating value set expansion size for multiple imports
* Fix bug using wrong message for value sets that are too costly to expand
* Fix extension urls not being linked in tree view
* rendering improvements and remove static use of describeSystem
* Fix NPE rendering profile comparisons
* Fix bug where slicing and grouping gets mixed up rendering profile tree

## Other code changes

* Wrap general exception for IWorkerContext (Catch missed exception from HAPI)
* Shim interfaces and classes to support clinical reasoning project updates.
* Fix duplicate txServer getters and setters
* Use extension class on Exception to force try-catch blocks on checkCodeOnServer calls (#1609)
* rework OID handling for better consistency
* handle time outs doing vsac import (starlink obstructions)
***NO_CI***
2024-05-10 04:18:38 +00:00
markiantorno 9ce2c57b8b Updating version to: 6.3.7-SNAPSHOT and incrementing test cases dependency. 2024-04-23 08:51:21 +00:00
markiantorno 46bdec9054 Release: v6.3.6
## Validator Changes

* fix NPE loading resources
* Don't enforce ids on elements when processing CDA
* Send supplements to tx server
* fix bug processing code bindings when value sets are complex (multiple filters)
* fix spelling of heirarchy
* Look up CodeSystem from terminology server
* Don't use tx-registry when manual terminology server is set

## Other code changes

* More work on WHO language support ($1592)
* allow validation message to have count
* render versions in profile links when necessary
* rework OID handling for better OID -> CodeSystem resolution
* fix up vsac importer for changes to client
* don't send xhtml for tx operations
* FHIRPath: Backport the defineVariable code to the R4 and R4B fhirpath implementations
* FHIRPath: Remove the alias/aliasAs custom functions (use standard defineVariable now)
* Bump lombok (#1603)
***NO_CI***
2024-04-23 08:03:57 +00:00
markiantorno ed18ec2cc6 Updating version to: 6.3.6-SNAPSHOT and incrementing test cases dependency. 2024-04-16 22:47:50 +00:00
markiantorno ccf66ece0b Release: v6.3.5
## Validator Changes

* Fix up path management in the validator for resolving references in Bundles
* Add support for defineVariable in FHIRPath
* Fix problem with CDA element having multiple types
* Fix problem with 'is' not working in FHIRPath for CDA types
* Fix issue processing CDA generic type names
* Fix for NPE processing tx server response
* Add support for code system supplements when communicating with tx server

## Other code changes

* OSGI: make sure JUnit 4 and 5 dependencies are optional (#1596) (Also removed duplicate managed versions of JUnit 4.13.2 and mockwebserver 4.11.0)
* Render CapabilityStatement.imports (and instantiates)
* Terminology Service Tests - minor improvements for running in HAPI, add $lookup & $translate support, create R4 clone
* Add support for $translate to terminology client
* More i18n work in rendering context (WHO project)
* Add isServerSide for seeing if code systems are only supported on the server
* Fix R4B loading issue that lead to wrong web paths for R4B resources
* Fix problems rendering Binary files in IGs
* Add support for rendering logical URIs
* Remove path.toFile()

## Security

* Finish moving all local file access to go through ManagedFileAccess

## WHO Internationalization work

* More work on date rendering
***NO_CI***
2024-04-16 22:01:50 +00:00
markiantorno 1f3d2838d9 Updating version to: 6.3.5-SNAPSHOT and incrementing test cases dependency. 2024-04-04 01:47:30 +00:00
markiantorno 45e8d86478 Release: v6.3.4
## Validator Changes

* Validate fixed/pattern values are not changed in derived profiles
* Fix NPE validating some profiles
* FHIRPath validation: consider sub-extensions when checking extension($) use
* Fix validation of concept maps containing SCT
* Preserve message id from terminology service so editors can use it to remove hints and warnings

## Other code changes

* Fix ConceptMap.group.target conversion from R3 to R5
* Fix NPE in list renderer
* fix bug showing 'required' instead of 'current' rendering additional bindings
* Fix bad references generating narratives in bundles
* Fix bug showing extension binding twice
* Various improvements to structure map validation to support cross-version mappings
* Add rendering for UsageContext and ContactDetail
* Fix broken link in xver IG for R2
* Fix bug rendering resources in Parameters resource
* Not-pretty xhtml gets line breaks before block tags to keep line length down (work around a jekyll issue)
* Improved ConceptMap rendering for cross-version IG
* Handle xhtml:div type for old FHIR version
* FML: strip '-' from rules names when parsing
* Update FML parsers to accept R5 metadata in R4 FML format
* Break out helper classes for Terminology Service Tester

## Security

* Add start of security notes
* Start moving file access to all go through ManagedFileAccess

## WHO Internationalization work:

* Add library to parse IETF Language definitions
* Move message translations to .po files as the master source & write convertor
* Much work making rendering i18n-able
* i18n for Patient renderer
* Refactor language handling in R5 renderers
***NO_CI***
2024-04-04 00:55:36 +00:00
markiantorno 0cebf9af9f Updating version to: 6.3.4-SNAPSHOT and incrementing test cases dependency. 2024-03-20 13:31:17 +00:00
markiantorno ec51399045 Release: v6.3.3
## Validator Changes

* Fix grammar in validation messages
* Fix NPE in validator for SIDs
* Duplicate designations in a code system is a warning, not an error
* Fix value set validation to validate codes in example code systems

## Other code changes

* Improved multi-language support for IG development (LanguageUtils)
***NO_CI***
2024-03-20 12:38:29 +00:00
markiantorno b2e3c261e4 Updating version to: 6.3.3-SNAPSHOT and incrementing test cases dependency. 2024-03-18 15:09:50 +00:00