## Major change:
* New R5 release - rebuild R5 implementation, update a lot of related code
## Validator Changes
* Load separate R5 extensions package
* Load FML directly, and validate mapping as much as possible
## Other code changes
* Fix bugs in Java R5 code generator
* Add more control at the code level over how to handle unknown profiles when generating snapshots
* Rework ConceptMap for major R5 changes
* Fix bug in CommaGeneratedStringBuilder (calling toString() multiple times duplicated content)
* handle case [reference].where(resolve() is X) when analysing types+elements in FHIRPath statements
***NO_CI***
## Validator Changes
* Fix validation for query references with empty parameter values
* Fix validation for conditional references
## Other code changes
* Fix resource rendering for conditional references
* Fix bug caused by changing DiagnosticReport.conclusion to markdown
* Track target types on references in FHIRPath
* Minor type checking fixes for FHIRPath
* Fix bugs in FHIRPath type checking discovered during R5 preparation
* Add standardsStatus support to core model
* Update okhttp library
* Allow HTTPS for terminology server URL
* Update table generator to suppress external links in base row and column
***NO_CI***
## Validator Changes
* Fix bug checking canonical URLs in bundles with dashes in them
* Fix extension messages (modifier and normal messages reversed)
* Change how error location paths are reported in bundles for easier resolution (no counting!)
* fix bugs checking whether binding is allowed in corner cases
## Other code changes
* Rendering Improvements: Additional Bindings, Search Parameters, Operation Definitions
* FHIRPath implementations for comparable(), highBoundary(), lowBoundary()
* Fix list of canonical resources from VersionUtilities
* Fix bug parsing html entities in XHTML parser
* Rename extension to http://hl7.org/fhir/StructureDefinition/structuredefinition-imposeProfile
***NO_CI***
* fix type of issue source extension
* update extension extractor
* FHIRPath changes for as - case and singleton issues
* minor fixes for extension rendering
* Update test cases version
---------
Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
Co-authored-by: dotasek <david.otasek@smilecdr.com>
## Validator Changes
* Fix for NPE rendering resources
* Consider CanonicalResource to be a CanonicalResource when validating profile references
* Work around error in R5 sdf-29 invariant
## Other code changes
* XHTML processing: Cater for "." in XML element and attribute names
* Handle R3 encoding of primitive values when validating profiles
* Improve error messaging when validating StructureDefinition
* Temporary Support for MedicationStatement in R5
* Work around for Identifier.use = ? in THO R5 package (old error)
* Rework Package API to allow for authentication on package servers
* Structure mapping now finds source Structure Definition by URI and sets ParserBase logical property appropriately.
* DOn't convert ig-r4 when converting package versions
***NO_CI***
* implement resolveValueSet from AHDIS Matchbox
* get SD from map source type, set logical model
* test for getSourceResourceFromStructureMap DefinitionException
* test resolveValueSet
* test transform logical source
* fix formatting
## Validator Changes
* update FHIRPath implementation for corrections to 'as' (R5 only in validator)
* Critical Security fix: enforce correct paths when unpacking archives (SecurityAdvisory-1082, CVE TBA)
## Other code changes
* Update to latest FHIRPath for older versions
* Add new ElementModel based parser for StructureMaps
* go-publish related changes
* FTP Client upload and logging improvements
* Refactor base64 handling for Android compatibility
## Security Note
The validator unzips archive files to the local file system when
it is scanning zip files it has been asked to validate, and when it is
installing packages. These processes are now resistant to the zip-slip
vulnerability.
***NO_CI***
* Update cache and comparison downloads to use https
* Zip Slip tests and fix
* Zip Slip tests 2 and fix
* Add missing tempDir child in ScannerTest
* Add win format zip test
* Add tests to r4b
* Add tests and fixes for slips in tgz processing
* Update fhir-test-cases version
## Validator Changes
* Better tracking and reporting of snapshot generation issues
* Update FHIRPath implementation to R4 with all corrections and extensions from R5 implemnetation
## Other code changes
* Inclusion of SAXON dependency for processing XSLT
* Error message spacing correction
* Basic FTPClient implementation
* test NPE in markdown processing
* go-publish support
* Start implementing loading structure maps with validation
***NO_CI***
* Update R4 FHIRPath implementation from R5, and get all tests passing
* test NPE in markdown processing
* go-publish support
* Start implementing loading structure maps with validation
* release notes
* more work on FTP
* Fix breaking test.
* Add fhir-test-cases to r4 pom to fix breaking test
Co-authored-by: Grahame Grieve <grahameg@gmail.ccom>
Co-authored-by: dotasek <david.otasek@smilecdr.com>
## Validator Changes
* Add support for fhir_comments in R2/R2B
* Add validator checking around versions in extension URLs
* Fix bug generating cross-version extensions
## Other code changes
* Fix minor NPEs running IG publisher
* Add new PE module (PEDefinition/PEInstance)
* Add support for liquid filters (resolve FHIRPath conflict)
* Fix up round-tripping of XPath constraints R4/R5
* Refactor R5 ProfileUtilities (and move rendering to rendering package)
* Fix appending text when generating snapshots
***NO_CI***
If the base text was null, appending a text in the derived element (using "...") would show a "null" before the text. This commit adds the method Utilities.appendDerivedTextToBase() to implement to correct behavior.
* Add test util for diff
* Start moving pathprocessor params into dedicated object
* Move diff to Params
* Move base and diff Limits to params
* Rename to newBaseCursor and newBaseLimit
* More renames
* Move url and webUrl to params
* Move profileName to params
* Add contextPathSource to params, adjust indent for processPaths calls
* Move contextPathTarget to params
* Code cleanup, unused variables + move trimDifferential to params
* Create PathSlicingParams
* Shuffle param order
* Move redirector to params
* Move sourceStructureDefinition to params
* Move derived to params
* Move debug statements to dedicated methods
* split processSimplePath
* split processPathWithSlicedBase
* Start splitting ProfilePathProcessor
* Move all params into ProfilePathProcessor
* Move all profile utility related classes to own package
Co-authored-by: dotasek <david.otasek@smilecdr.com>
## Validator Changes
* Remove use of .fhir/package-client cache (only use the main .fhir/package now)
## Other code changes
* Hack work around for broken template input for R5 OperationOutcome
* Fix up problems with test case consistency in R5 test cases
* Add R5-snapshot3 version enum to R4 version list
***NO_CI***
## Validator Changes
* Change Java minimum version from 8 to 11
* Fix Error message missing parameter (very minor fix)
## Other code changes
* Refactoring package-list.json handling
* Upgrade code to latest R5 release (Snapshot 3)
* Fix bug with version patching loading package for the first time + fix bug determining spec reference
* Add Ids to profile spreadsheets
***NO_CI***
## Validator Changes
* Change rules around Document and Link Message validation (see [Jira](https://jira.hl7.org/browse/FHIR-39502) and [Zulip](https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/Entry.20isn't.20reachable.20by.20traversing.20from.20first.20Bundle.20entry) for details)
* Allow https://example in questionnaire example links
## Other code changes
* Rendering Improvements for deprecated codes Including deprecation reason
* Add Accept header fetching JSON
* Fix version comparison bug
* Fixes for producing profile summary in IGs
* Add contents to .index.json and bump to v2
* Fix stated package & version in alternate versions packages
* Refactor ProfileUtilities.generateSnapshot
* Fix bug in XHTML generation around empty tags
* Fix NPE appending slashes
* Fix rendering timing to not use a specific verb
* Fix R2 - RX ValueSet convertor for Code Systems
***NO_CI***
* Refactor 1 rename and starter comments
* Refactor 2 more renaming make method for match
* Make final what can be final
* Wrap root call to processPaths
* WIP Create ProfilePathProcessor
* Redo method scoop, move internal classes
* Use profileUtilities instance
* Finish scoop. Tests pass.
* Finish scoop for real this time.
* Encapsulate cursors
* Delete unused params
* Split path processing into two branches
Co-authored-by: dotasek <david.otasek@smilecdr.com>
## Validator Changes
* Perform canonical resolution using package dependencies even for version specific references (workaround for VSAC bad behaviour)
## Other code changes
* Fix conversion between R3 andR4/R5 for Immunization.notGiven
* Fix parameter handling for tx server responses
* Add cast support for more types in FML implementation
* Fixes to GQL Schema generation
***NO_CI***
## Validator Changes
* Improved Loading speed (20% reduction)
* Fix issue handling path on content references on deeply nested content
## Other code changes
* Fix rendering issue when reference.reference missing
* Add rule date to validation messages so new rules can be highlighted
***NO_CI***
## Validator Changes
* Validate HTML entities in XHTML in resources
## Other code changes
* Stop producing XHTML entities in resources when rendering
***NO_CI***
## Validator Changes
* Minor fix to jurisdiction output (+ handle case where JVM has no locale)
* Add support for extensions parameter
* Make all error messages include version of underlying resource if available
* Accept display for code from ValueSet CLD if no code system available
* Various minor improvements to error messages
## Other code changes
* Minor clean up in test cases
* Fix up i18n support to handle pluralization properly
* Refactor resource narrative generation rules (GenerationRules.X)
* Display resource type in generated narrative
* Add support for generating R4 and R4B packages
* Add support for generating XVer packages
***NO_CI***
Grahame Grieve
Grahame Grieve
markiantorno
dotasek
Deepak Sharma
Jim Balhoff
dksharma
dotasek
Jose Costa Teixeira
Neelima Karipineni
Quentin Ligier
Alexey Tschudnowsky
Michael Lawley
Oliver Egger
James Agnew
Vitor Pamplona