Commit Graph

865 Commits

Author SHA1 Message Date
Grahame Grieve 72b0aa6442 fix up implementation of htmlChecks/htmlChecks2 2020-07-17 09:28:20 +10:00
Grahame Grieve bb8fde3682 fix bug assigning min=0 to slices by default 2020-07-17 09:27:51 +10:00
Grahame Grieve 4dc78b5b3c add support for table row opacity 2020-07-16 09:19:40 +10:00
Grahame Grieve fe29c3022f implement HTMLChecks in FHIRPath 2020-07-15 16:44:44 +10:00
Grahame Grieve 1736784bae Add check for constraining must=support wrongly 2020-07-15 16:43:57 +10:00
Grahame Grieve 5ae6aa23fd fix problem with snapshot test infrastructure 2020-07-15 16:43:16 +10:00
Grahame Grieve fa7de3a308 more FHIRPath engine into i18n framework 2020-07-14 08:16:56 +10:00
Grahame Grieve b65567010c fix rendering of target types in profiles 2020-07-14 07:47:15 +10:00
Grahame Grieve 7d7c1315d4 fix bundle labels when rendering 2020-07-10 06:50:55 +10:00
markiantorno facb2ca0a8 Updating version to: 5.0.13-SNAPSHOT 2020-07-07 02:37:39 +00:00
markiantorno b770fb8a2c Release: v5.0.12
* Fix bug in snapshot generation - not handling case where content is sliced, base slicing detail is provided, and max slices = 1
* More work on validating existing snapshots

***NO_CI***
2020-07-07 02:27:57 +00:00
Grahame Grieve ce47093c12
Gg work (#267)
* fix for new test case about profiles restricting types

* update release notes

* fix NPEs doing ProfileComparison

* fix non-translated messages in InstanceValidator

* Fix validation issues

* update to 1.1.22 tests

* fix bug finding children in getChildList when element is a reference to another element

* fixes to QuestionnaireRenderer + add QuestionnaireResponseRenderer

* Add more informative error when no type parser provided

* fix bug where current/dev builds do not properly update the cache

* improve test error message

* set up release notes

* fix bug with CDA snapshot generation

* fix bug in type checking code

* Add support for validating against ImplementationGuide.global

* Fix bug in QuestionnaireResponse rendering

* update tests dependency

* ping build

* Add additional StructureDefinition validation

* update release notes

* fix npe rendering diagnostic reports without subjects

* don't add note on untranslatable messages

* check existing snapshots (preliminary)

* add signpost message tracking

* start working on profile generating bug

* Fix bug in snapshot - not handling case where content is sliced, base slicing detail is provided, and max slices = 1

* fix release notes
2020-07-06 20:21:40 -04:00
markiantorno ab8bbb5491 Updating version to: 5.0.12-SNAPSHOT 2020-07-04 00:25:03 +00:00
markiantorno 9d5cb114a2 Release: v5.0.11
* Added text/cql.identifier media type to Measure validation
* Fix bug in QuestionnaireResponse rendering
* Validate based on ImplementationGuide.global
* add validation parameter -crumb-trails
* improve validation of StructureDefinitions

***NO_CI***
2020-07-04 00:15:32 +00:00
Grahame Grieve 92c02d2294
Add support for validating against ImplementationGuide.global (#266)
* fix for new test case about profiles restricting types

* update release notes

* fix NPEs doing ProfileComparison

* fix non-translated messages in InstanceValidator

* Fix validation issues

* update to 1.1.22 tests

* fix bug finding children in getChildList when element is a reference to another element

* fixes to QuestionnaireRenderer + add QuestionnaireResponseRenderer

* Add more informative error when no type parser provided

* fix bug where current/dev builds do not properly update the cache

* improve test error message

* set up release notes

* fix bug with CDA snapshot generation

* fix bug in type checking code

* Add support for validating against ImplementationGuide.global

* Fix bug in QuestionnaireResponse rendering

* update tests dependency

* ping build

* Add additional StructureDefinition validation

* update release notes
2020-07-03 18:25:15 -04:00
markiantorno 97f6758969 Updating version to: 5.0.11-SNAPSHOT 2020-07-01 00:52:38 +00:00
markiantorno 9602898b73 Release: v5.0.10
* Added text/cql.identifier media type to Measure validation
***NO_CI***
2020-07-01 00:43:41 +00:00
Grahame Grieve 9024a309ac
fix various bugs (#265)
* fix for new test case about profiles restricting types

* update release notes

* fix NPEs doing ProfileComparison

* fix non-translated messages in InstanceValidator

* Fix validation issues

* update to 1.1.22 tests

* fix bug finding children in getChildList when element is a reference to another element

* fixes to QuestionnaireRenderer + add QuestionnaireResponseRenderer

* Add more informative error when no type parser provided

* fix bug where current/dev builds do not properly update the cache

* improve test error message

* set up release notes
2020-06-30 20:25:38 -04:00
markiantorno 7f7e83f6f8 Updating version to: 5.0.10-SNAPSHOT 2020-06-27 00:25:51 +00:00
markiantorno 4ca25bdb52 Release: v5.0.9
* Two significant bug fixes for the validator (thanks Mark Burnett from Babylon Health for finding them):
  * The validator was not enforcing type restrictions when some profiles restricted elements with choices to a single type
  * The validator was only creating warnings not errors for required bindings on some Quantities
  * + Fix handling of infrastructural terminology failings on Codings - treat them as warnings not errors
* Add extra validation for value sets (check concept codes are valid)
* Add extra code to check derivation consisteny for SearchParameter resources
* More Improvements to Questionnaire Rendering

***NO_CI***
2020-06-27 00:17:13 +00:00
Grahame Grieve b08c12f2c4
update test case dependency to 1.1.22 (#263)
* fix for new test case about profiles restricting types

* update release notes

* fix NPEs doing ProfileComparison

* fix non-translated messages in InstanceValidator

* Fix validation issues

* update to 1.1.22 tests
2020-06-26 20:07:30 -04:00
Grahame Grieve 03a4224424
fix for new test case about profiles restricting types (#261)
* fix for new test case about profiles restricting types

* update release notes

* fix NPEs doing ProfileComparison

* fix non-translated messages in InstanceValidator
2020-06-26 14:46:54 -04:00
Grahame Grieve 93f8b1c338
Merge pull request #255 from ahdis/oe_structuremap_np
StructureMap rendering  has np when RelationShip is not set
2020-06-26 10:24:09 +10:00
Grahame Grieve e1e994704d More stability on tests + fix questionnaire renderer problem + add SearchParameter derivation validation 2020-06-25 11:24:03 +10:00
Grahame Grieve a85adcf88d enhancements to questionnaire renderer 2020-06-24 17:27:08 +10:00
Grahame Grieve 37bd445ed4 fix bug in rendering of relative references 2020-06-24 15:07:02 +10:00
Grahame Grieve 7ac714c2b6 Add resource sorters 2020-06-24 13:45:28 +10:00
Oliver Egger 4f21c40f83 set equivalence relationship in parsing 2020-06-22 12:34:00 +02:00
markiantorno 344d778a87 Updating version to: 5.0.9-SNAPSHOT
***NO_CI***
2020-06-19 22:15:34 +00:00
markiantorno 87f1c42b89 Release: v5.0.8
***NO_CI***
2020-06-19 22:06:03 +00:00
Grahame Grieve 0e8b5f6552
various fixes for reported bugs (#252)
* fix bug in Definition mode - support ofType()

* fix bug reading old packages

* fix for invalid OperationOutome if nothing is wrong

* more fix for when no errors found
2020-06-19 16:02:56 -04:00
Grahame Grieve 6a6f6e6167 Add support for removing code systems from the cache 2020-06-18 08:46:01 +10:00
Grahame Grieve 93b0d74eb5 Add GraphDefinition engine 2020-06-17 12:23:00 +10:00
Grahame Grieve faf31afda1 fix rendering issues found in main build 2020-06-17 12:22:40 +10:00
Grahame Grieve 1a4edb33a4 Fix problem with NPE rendering quantity 2020-06-14 07:08:31 +10:00
markiantorno 49c35b1de2 Updating version to: 5.0.8-SNAPSHOT
***NO_CI***
2020-06-13 13:12:37 +00:00
markiantorno b2ecaa2bfa Release: v5.0.7
* Override extension methods in BackboneElement to look in modifierExtensions as well as extensions
* First draft of Profile Comparison tools (org.hl7.fhir.r5.comparison)
* Improved error messages when snapshot generation fails when slicing something that doesn't repeat
* Improvements for CDA round-tripping (XML esacping issues, xsi:type related issues, namespacing issues)
* Fix bug rendering DiagnosticReports with multiple categories
* adjust check on Attachment to only be an warning (when no meaningful content exists)
* add security check mode to Validator
***NO_CI***
2020-06-13 12:51:27 +00:00
Mark Iantorno f5455bb9e9
Merge branch 'release' into merge_branch 2020-06-12 19:34:50 -04:00
Grahame Grieve c1a9d3d1e5 beef up tests for multiple dependencies in snapshot generation 2020-06-12 09:23:12 +10:00
Grahame Grieve c6d667db04 fix for profile comparison issues 2020-06-12 09:22:48 +10:00
Grahame Grieve 3e55b24473
Merge pull request #237 from hapifhir/gg-work
override Element extension methods to also check for modifierExtensions
2020-06-11 21:58:20 +10:00
Grahame Grieve ebbee32827
Merge pull request #238 from hapifhir/gg-work-2
fix bug with category
2020-06-11 21:57:50 +10:00
Grahame Grieve 5f1d6e193c first release of functional Profile comparison on new framework 2020-06-11 16:40:57 +10:00
Grahame Grieve a09c4c3cea fix NPE in IG publisher 2020-06-11 16:40:20 +10:00
Grahame Grieve 3b925f219d Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into gg-work 2020-06-11 06:24:02 +10:00
Oliver Egger ebc2a7a6ba don't escape umlaut in elem utf8 2020-06-10 19:50:52 +02:00
Grahame Grieve 8f838d164f fix bug with category 2020-06-10 22:08:04 +10:00
Grahame Grieve 5efaee2c47 add javadoc around extension mgmt 2020-06-10 12:16:54 +10:00
Grahame Grieve 0c9375aa5b fix whitespace 2020-06-10 09:47:12 +10:00
Grahame Grieve cfe386e141 clarify 2020-06-10 09:45:27 +10:00
Grahame Grieve fb9b123c65 override Element extension methods to also check for modifierExtensions 2020-06-10 09:00:51 +10:00
Grahame Grieve b01c64dc2c
Merge pull request #197 from ahdis/oliveregger_cdatitle
Deserializing CDA ST and ED elements from JSON fix
2020-06-10 08:47:13 +10:00
Grahame Grieve 4d9ace1619
Merge pull request #228 from ahdis/oliveregger_fml_xsitype
CDA xsi:type serialization when using fhir mapping language
2020-06-10 08:45:12 +10:00
Grahame Grieve 9e7ef8ab38
Merge pull request #230 from ahdis/oe_cdanarrative_npfix
CDA Narrative conversion from FHIR, Nullpointer exception fix
2020-06-10 08:43:17 +10:00
Grahame Grieve c26b331850 more work on profile comparison 2020-06-09 17:22:37 +10:00
Grahame Grieve 81ebd97599 fix bug in validator XML parser 2020-06-09 17:22:03 +10:00
Oliver Egger 31a4d31755 CDA Narrative conversion from FHIR NP fix 2020-06-08 21:51:05 +02:00
Oliver Egger 473a9aab0a roundtrip for sdtc, add ns, xml name to serialize 2020-06-08 15:48:13 +02:00
Oliver Egger d0ee44dfa8 json roundtrip cda title 2020-06-08 10:47:54 +02:00
Oliver Egger 5576a02378 add ed/st type definition and roundrip 2020-06-08 10:32:47 +02:00
Oliver Egger 22ec0924da logical model not as resource (create xsi:type) 2020-06-08 10:01:09 +02:00
Grahame Grieve 94467b270a standardise terminology client across versions 2020-06-07 08:42:14 +10:00
Mark Iantorno 0fb57007c4
Release v5.0.6 (#226)
* reenable test and fix recursion

* remove disabled r4 fml tests

* add conformsTo test and support for FML

* Snapshot builder fix (#223)

* Update module-snapshot-publishing.yml for Azure Pipelines

* Changing pipeline, because intermodule depenedecies are not being read in correctly.

* Update README.md

* Fixed bad link

* Release: v5.0.6

***NO_CI***

* Updating version to: 5.0.7-SNAPSHOT
***NO_CI***

* Fixing issues and preparing for release (#225)

* Issue #189 - improve Questionnaire error message

* fix for issue #187

* more work on comparison

* Fix for NamingSystem display

Co-authored-by: Oliver Egger <oliver.egger@ahdis.ch>
Co-authored-by: Grahame Grieve <grahameg@gmail.com>
2020-06-05 18:47:17 -04:00
Grahame Grieve 0c718c7a9b Fix for NamingSystem display 2020-06-06 07:28:58 +10:00
Grahame Grieve b2367e94b6 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into gg-work 2020-06-06 07:24:00 +10:00
Grahame Grieve 60119b5f64 more work on comparison 2020-06-06 07:23:43 +10:00
Grahame Grieve eaab390aa4
Merge pull request #218 from ahdis/oliveregger_fml_conformsto
FHIR Mapping Language support for conformsTo function
2020-06-06 07:00:23 +10:00
Mark Iantorno 97b6a9fbdb
Snapshot builder fix (#223)
* Update module-snapshot-publishing.yml for Azure Pipelines

* Changing pipeline, because intermodule depenedecies are not being read in correctly.
2020-06-05 13:23:52 -04:00
Oliver Egger e6e4515777 add conformsTo test and support for FML 2020-06-05 17:56:14 +02:00
Oliver Egger 72d250a40a Merge remote-tracking branch 'upstream/master' 2020-06-05 17:55:01 +02:00
markiantorno 7975a65474 wip 2020-06-05 11:05:52 -04:00
Grahame Grieve 3c296b3ff7 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into gg-work 2020-06-05 05:36:14 +10:00
markiantorno 9c3d678f6e changing package cache manager to the new version used in r4 so builds pass. reverting changes to fork number in maven 2020-06-04 09:57:34 -04:00
Oliver Egger bc4f99bed8 Merge remote-tracking branch 'upstream/master' 2020-06-04 10:29:48 +02:00
Grahame Grieve fcc18a0e39
Merge pull request #214 from hapifhir/ja_20200524_npm_rework
Refactor package support to remove filesystem dependency
2020-06-04 16:04:02 +10:00
Grahame Grieve f90d456ddc Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core into gg-work 2020-06-04 10:37:37 +10:00
Grahame Grieve 83157e689f Improve rendering of content reference in profiles 2020-06-04 10:37:18 +10:00
markiantorno 7a63c0b353 wip 2020-06-03 13:33:12 -04:00
markiantorno 38e2afbf25 Packaging all SNAPSHOTS at once, instead of iterating through individual pom files 2020-06-03 11:19:57 -04:00
markiantorno a74b604ca3 wip 2020-06-03 10:21:06 -04:00
Oliver Egger 429774afb9 Merge remote-tracking branch 'upstream/master' 2020-06-03 14:48:53 +02:00
Grahame Grieve 861a0ee706 change error to warning for extension frrom different version because context might change between versions 2020-06-03 16:03:14 +10:00
Grahame Grieve 14505af3b5 Fix NPE validating from unknown code system when the code is in extension 2020-06-03 09:32:52 +10:00
jamesagnew 6534a5358b Merge branch 'master' into ja_20200524_npm_rework 2020-06-02 18:02:51 -04:00
Grahame Grieve 7ac1b1f0e0 implement new FHIRPath functions 2020-06-03 06:52:47 +10:00
Grahame Grieve 08b59b89e2 Merge branch 'master' of https://github.com/hapifhir/org.hl7.fhir.core 2020-06-03 05:06:45 +10:00
Grahame Grieve 8658047c16 FHIRPath functions 2020-06-03 05:06:25 +10:00
markiantorno b8a4f6ae4f putting back in check for WINDOWS os for sdc test case. I know this isn't ideal, but this will get the tests back to a passing state, and we canmake changes with the CI running 2020-06-02 11:25:59 -04:00
Grahame Grieve f169a4315f start working on R3 string functions 2020-06-02 18:21:27 +10:00
Grahame Grieve 211ac8fc12 fix bug processing profiles for v1.4.0 2020-06-02 18:21:09 +10:00
Grahame Grieve f1d901a842 Support for rendering contained resources in IG Publisher 2020-06-02 13:52:28 +10:00
Grahame Grieve c5634c012e Questionnaire Rendering improvements 2020-06-02 13:51:41 +10:00
Grahame Grieve a0245ca926 Release new version 5.0.6 2020-06-01 17:40:06 +10:00
Grahame Grieve a99c2cee96 Fix bad path in QuestionnaireRenderer 2020-06-01 16:53:02 +10:00
Grahame Grieve adf7daff51 fix bad path in snapshot generation tests 2020-06-01 16:52:47 +10:00
Grahame Grieve ba505a800e Add toBase64 & fromBase64 to FHIRPath 2020-06-01 16:51:49 +10:00
jamesagnew 17411a3659 Merge branch 'master' into ja_20200524_npm_rework 2020-05-30 12:07:17 -04:00
Grahame Grieve 05ac3ebc98 Release new version 5.0.5 2020-05-30 09:55:30 +10:00
Grahame Grieve b4fc944afc fix up CDA tests, and add support for http://hl7.org/fhir/StructureDefinition/elementdefinition-xml-name for CDA 2020-05-30 09:39:53 +10:00
Grahame Grieve 4af4925657 move turtle parser + tests to Utilities 2020-05-30 09:38:48 +10:00