6ba8b38fc5
## Validator Changes * Find value sets on tx server if not tx.fhir.org * Do not send Content-Type header with GET requests for tx servers * Fix npe validating code system * Support discriminator by position * Don't check type characteristics for unknown types ## WHO I18n Project * Fix typos in phrases, and fix up handling of apostrophes in messages without parameters * Test and fix for single quote escapes in I18n * Create and test transifex configuration ## Rendering Changes * Fix contact rendering to work properly * Fix issue resolving contained resource rendering DiagnosticReports etc * Handle case where Contact.value has extensions instead of a string value * Render Parameterised types * Fix bug with LOINC Code row showing wrongly in Profile Details view * Partial implementation of type parameters * Fixed rendering of actor-specific obligations, added elementIds to obligation narrative rendering * Corrected ObligationsRenderer to handle multiple actors and multiple codes. Also got obligations with elements to render properly (which means knowing whether you're on a table page or definitions page, what tab you're on, and whether the element for the obligation is in-scope for that tab (so you know whether to hyperlink or not). Had to make links on the tables point to definitions because table anchors are not unique. ## Other code changes * split out Base.canHavePrimitiveValue() from Base.hasPrimitiveValue() * Refactor how observation profiles are registered in order to generalise management of extra profiles * Use validation policy to implement Observation profile rules * Rework validation policy management in standalone validator * Try deploying javadoc with SNAPSHOT * Add utility to unpack the spec.internals file * v2 in FHIR tests * Fix bug loading language pack NPMs ***NO_CI*** |
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.azure/i18n-coverage-table | ||
.github | ||
.mvn/wrapper | ||
org.hl7.fhir.convertors | ||
org.hl7.fhir.core.generator | ||
org.hl7.fhir.dstu2 | ||
org.hl7.fhir.dstu3 | ||
org.hl7.fhir.dstu2016may | ||
org.hl7.fhir.r4 | ||
org.hl7.fhir.r4b | ||
org.hl7.fhir.r5 | ||
org.hl7.fhir.report | ||
org.hl7.fhir.utilities | ||
org.hl7.fhir.validation | ||
org.hl7.fhir.validation.cli | ||
.codeql-config.yml | ||
.editorconfig | ||
.gitignore | ||
LICENSE.txt | ||
README.md | ||
RELEASE_NOTES.md | ||
RELEASE_NOTES.template.md | ||
cache-target-tasks-template.yml | ||
checkstyle.xml | ||
checkstyle_suppressions.xml | ||
codecov.yml | ||
compare updated code.bat | ||
cve-suppression.xml | ||
i18n-coverage-table.png | ||
i18n-coverage.csv | ||
master-branch-pipeline.yml | ||
mvnw | ||
mvnw.cmd | ||
owasp-suppression-file.xml | ||
pom.xml | ||
pull-request-pipeline.yml | ||
r4 test resources.lnk | ||
release-branch-pipeline.yml | ||
security.md | ||
setup-and-cache-job-template.yml | ||
setup-signing-tasks-template.yml | ||
test-cli-exec-job-template.yml | ||
test-unit-jobs-template.yml | ||
transifex.yml | ||
validation test resources.lnk |
README.md
HAPI FHIR - HL7 FHIR Core Artifacts
CI Status (master) |
---|
This is the java core object handling code, with utilities (including validator), for the FHIR specification. included in this repo:
- org.fhir.fhir.utilities: Shared code used by all the other projects - including the internationalization code
- org.fhir.fhir.r5: Object models and utilities for R5 candidate (will change regularly as new R5 candidates are released)
- org.fhir.fhir.r4b: Object models and utilities for R4B
- org.fhir.fhir.r4: Object models and utilities for R4
- org.fhir.fhir.dstu3: Object models and utilities for STU3
- org.fhir.fhir.dstu2: Object models and utilities for STU2
- org.fhir.fhir.dstu2016may: Object models and utilities for an early STU3 candidate still used by some implementers
- org.fhir.fhir.convertors: Code to convert between versions, and other version independence code - uses all the above projects
- org.fhir.fhir.validation: The FHIR Java validator (note: based on R5 internally, but validates all the above versions)
- org.fhir.fhir.validation.cli: Holder project for releasing the FHIR validator as as single fat jar (will be removed in the future)
This code is used in all HAPI servers and clients, and also is the HL7 maintained FHIR Validator. In addition, this is the core code for the HL7 maintained IG publisher and FHIR main build publisher. As such, this code is considered an authoritatively correct implementation of the core FHIR specification that it implements.
Building this Project
Prerequisites
This project uses Java (minumum version 11), Apache Maven, and Lombok to build. You can find detailed instructions on setting up this project in your IDE here.
Build Commands
To build and add artifacts to your local Maven repository:
mvn install
To skip unit tests:
mvn -Dmaven.test.skip install
To clean and rebuild the terminology server caches:
clean
mvn clean -Dfhir.txcache.clean=true
rebuild
mvn test -Dfhir.txcache.rebuild=true
The source contains cached terminology server responses for testing. If the expected responses have changed in any way,
this cache should be cleaned and rebuilt with the above so that subsequent mvn test
calls will have the most current
responses cached.
To build only the validator_cli jar locally:
mvn clean package -Dmaven.test.skip=true --projects org.hl7.fhir.validation.cli --no-transfer-progress
cp org.hl7.fhir.validation.cli/target/org.hl7.fhir.validation.cli*-SNAPSHOT.jar ./validator_cli.jar
This will produce ./validator_cli.jar
in the project root directory.
Releases
The built binary for the FHIR command-line validator is released through GitHub releases and can be downloaded directly here. For instructions on using this validator visit the FHIR Validator Confluence page.
All build artifacts are published on OSS Sonatype.
Current Versions
Project | Current Release | Latest SNAPSHOT |
---|---|---|
org.hl7.fhir.validation.cli | ||
org.hl7.fhir.validation | ||
org.hl7.fhir.dstu2 | ||
org.hl7.fhir.dstu2016may | ||
org.hl7.fhir.dstu3 | ||
org.hl7.fhir.r4 | ||
org.hl7.fhir.r5 |
To use these artifacts in your project will need to add the proper dependency to your pom.xml
file, or your build.gradle.kts
file.
pom.xml
<repositories>
<repository>
<id>oss-snapshot</id>
<url>https://oss.sonatype.org/content/repositories/snapshots/</url>
</repository>
<repository>
<id>oss-releases</id>
<url>https://oss.sonatype.org/service/local/staging/deploy/maven2/</url>
</repository>
</repositories>
build.gradle.kts
repositories {
maven {
url = uri("https://oss.sonatype.org/content/repositories/snapshots")
}
maven {
url = uri("https://oss.sonatype.org/service/local/staging/deploy/maven2/")
}
}
After adding the necessary repositories, you can include the libraries as follows:
org.hl7.fhir.validation.cli
Maven
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.validation.cli</artifactId>
<version>(latest version)</version>
</dependency>
Gradle
compile group: 'ca.uhn.hapi.fhir', name: 'org.hl7.fhir.validation.cli', version: '(latest version)'
org.hl7.fhir.dstu2
Maven
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu2</artifactId>
<version>(latest version)</version>
</dependency>
Gradle
compile group: 'ca.uhn.hapi.fhir', name: 'hapi-fhir-structures-dstu2', version: '(latest version)'
org.hl7.fhir.dstu3
Maven
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu3</artifactId>
<version>(latest version)</version>
</dependency>
Gradle
compile group: 'ca.uhn.hapi.fhir', name: 'hapi-fhir-structures-dstu3', version: '(latest version)'
org.hl7.fhir.r4
Maven
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-r4</artifactId>
<version>(latest version)</version>
</dependency>
Gradle
compile group: 'ca.uhn.hapi.fhir', name: 'hapi-fhir-structures-r4', version: '(latest version)'
org.hl7.fhir.r5
Maven
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-r5</artifactId>
<version>(latest version)</version>
</dependency>
Gradle
compile group: 'ca.uhn.hapi.fhir', name: 'hapi-fhir-structures-r5', version: '(latest version)'
Internationalization
This project implements internationalization for its user tools and utilities for several locales using a combination of GNU PO and Java Properties files.
Translation from the core library's original English locale to other supported locales is an ongoing process. The current level of coverage is calculated by the number of translated phrases, and can be viewed in the following figure:
CI/CD
All integration and delivery done on Azure pipelines. Azure project can be viewed here.
- Pull Request Pipeline is automatically run for every Pull Request to ensure that the project can be built via maven. [Azure Pipeline] [source]
- Master Branch Pipeline is automatically run whenever code is merged to the master branch and builds the SNAPSHOT binaries distributed to OSSRH [Azure Pipeline][source]
- Release Branch Pipeline is run manually whenever a release is ready to be made. It builds the release binaries, distributes them to artifact repositories and sends release notifications. [Azure Pipeline][source]
A brief overview of our publishing process is here.
For more detailed instructions on cutting a release, please read the wiki
Maintenance
Have you found an issue? Do you have a feature request? Great! Submit it here and we'll try to fix it as soon as possible.
This project is maintained by Grahame Grieve, James Agnew, David Otasek and Mark Iantorno on behalf of the FHIR community.