diff --git a/tools/ts-api-guardian/lib/cli.ts b/tools/ts-api-guardian/lib/cli.ts
index 0b2c525268..6738cf5aee 100644
--- a/tools/ts-api-guardian/lib/cli.ts
+++ b/tools/ts-api-guardian/lib/cli.ts
@@ -16,23 +16,8 @@ import * as path from 'path';
 
 import {SerializationOptions, generateGoldenFile, verifyAgainstGoldenFile, discoverAllEntrypoints} from './main';
 
-/** Name of the CLI */
 const CMD = 'ts-api-guardian';
 
-/** Name of the Bazel workspace that runs the CLI. */
-const bazelWorkspaceName = process.env.BAZEL_WORKSPACE;
-/**
- * Path to the Bazel workspace directory. Only set if the CLI is run with `bazel run`.
- * https://docs.bazel.build/versions/master/user-manual.html#run.
- */
-const bazelWorkspaceDirectory = process.env.BUILD_WORKSPACE_DIRECTORY;
-/**
- * Regular expression that matches Bazel manifest paths that start with the
- * current Bazel workspace, followed by a path delimiter.
- */
-const bazelWorkspaceManifestPathRegex =
-    bazelWorkspaceName ? new RegExp(`^${bazelWorkspaceName}[/\\\\]`) : null;
-
 export function startCli() {
   const {argv, mode, errors} = parseArguments(process.argv.slice(2));
 
@@ -225,48 +210,35 @@ Options:
 }
 
 /**
- * Resolves a given path in the file system. If `ts-api-guardian` runs with Bazel, file paths
- * are resolved through runfiles. Additionally in Bazel, this method handles the case where
- * manifest file paths are not existing, but need to resolve to the Bazel workspace directory.
- * This happens commonly when goldens are approved, but the golden file does not exist yet.
+ * Resolves a given path to the associated relative path if the current process runs within
+ * Bazel. We need to use the wrapped NodeJS resolve logic in order to properly handle the given
+ * runfiles files which are only part of the runfile manifest on Windows.
  */
-function resolveFilePath(fileName: string): string {
-  // If an absolute path is specified, the path is already resolved.
-  if (path.isAbsolute(fileName)) {
-    return fileName;
+function resolveBazelFilePath(fileName: string): string {
+  // If the CLI has been launched through the NodeJS Bazel rules, we need to resolve the
+  // actual file paths because otherwise this script won't work on Windows where runfiles
+  // are not available in the working directory. In order to resolve the real path for the
+  // runfile, we need to use `require.resolve` which handles runfiles properly on Windows.
+  if (process.env['BAZEL_TARGET']) {
+    // This try/catch block is necessary because if the path is to the source file directly
+    // rather than via symlinks in the bazel output directories, require is not able to
+    // resolve it.
+    try {
+      return path.relative(process.cwd(), require.resolve(fileName));
+    } catch (err) {
+      return path.relative(process.cwd(), fileName);
+    }
   }
-  // Outside of Bazel, file paths are resolved based on the current working directory.
-  if (!bazelWorkspaceName) {
-    return path.resolve(fileName);
-  }
-  // In Bazel, we first try to resolve the file through the runfiles. We do this by calling
-  // the `require.resolve` function that is patched by the Bazel NodeJS rules. Note that we
-  // need to catch errors because files inside tree artifacts cannot be resolved through
-  // runfile manifests. Hence, we need to have alternative resolution logic when resolving
-  // file paths. Additionally, it could happen that manifest paths which aren't part of the
-  // runfiles are specified (i.e. golden is approved but does not exist in the workspace yet).
-  try {
-    return require.resolve(fileName);
-  } catch {
-  }
-  // This handles cases where file paths cannot be resolved through runfiles. This happens
-  // commonly when goldens are approved while the golden does not exist in the workspace yet.
-  // In those cases, we want to build up a relative path based on the manifest path, and join
-  // it with the absolute bazel workspace directory (which is only set in `bazel run`).
-  // e.g. `angular/goldens/<..>/common` should become `{workspace_dir}/goldens/<...>/common`.
-  if (bazelWorkspaceManifestPathRegex !== null && bazelWorkspaceDirectory &&
-      bazelWorkspaceManifestPathRegex.test(fileName)) {
-    return path.join(bazelWorkspaceDirectory, fileName.substr(bazelWorkspaceName.length + 1));
-  }
-  throw Error(`Could not resolve file path in runfiles: ${fileName}`);
+
+  return fileName;
 }
 
 function resolveFileNamePairs(argv: minimist.ParsedArgs, mode: string, entrypoints: string[]):
     {entrypoint: string, goldenFile: string}[] {
   if (argv[mode]) {
     return [{
-      entrypoint: resolveFilePath(entrypoints[0]),
-      goldenFile: resolveFilePath(argv[mode]),
+      entrypoint: resolveBazelFilePath(entrypoints[0]),
+      goldenFile: resolveBazelFilePath(argv[mode]),
     }];
   } else {  // argv[mode + 'Dir']
     let rootDir = argv['rootDir'] || '.';
@@ -274,8 +246,8 @@ function resolveFileNamePairs(argv: minimist.ParsedArgs, mode: string, entrypoin
 
     return entrypoints.map((fileName: string) => {
       return {
-        entrypoint: resolveFilePath(fileName),
-        goldenFile: resolveFilePath(path.join(goldenDir, path.relative(rootDir, fileName))),
+        entrypoint: resolveBazelFilePath(fileName),
+        goldenFile: resolveBazelFilePath(path.join(goldenDir, path.relative(rootDir, fileName))),
       };
     });
   }
diff --git a/tools/ts-api-guardian/lib/main.ts b/tools/ts-api-guardian/lib/main.ts
index 86707c4a0d..8555d4f9d2 100644
--- a/tools/ts-api-guardian/lib/main.ts
+++ b/tools/ts-api-guardian/lib/main.ts
@@ -17,6 +17,13 @@ export function generateGoldenFile(
     entrypoint: string, outFile: string, options: SerializationOptions = {}): void {
   const output = publicApi(entrypoint, options);
 
+  // BUILD_WORKSPACE_DIRECTORY environment variable is only available during bazel
+  // run executions. This workspace directory allows us to generate golden files directly
+  // in the source file tree rather than via a symlink.
+  if (process.env['BUILD_WORKSPACE_DIRECTORY']) {
+    outFile = path.join(process.env['BUILD_WORKSPACE_DIRECTORY'], outFile);
+  }
+
   ensureDirectory(path.dirname(outFile));
   fs.writeFileSync(outFile, output);
 }
@@ -29,8 +36,7 @@ export function verifyAgainstGoldenFile(
   if (actual === expected) {
     return '';
   } else {
-    const displayFileName = path.relative(process.cwd(), goldenFile);
-    const patch = createPatch(displayFileName, expected, actual, 'Golden file', 'Generated API');
+    const patch = createPatch(goldenFile, expected, actual, 'Golden file', 'Generated API');
 
     // Remove the header of the patch
     const start = patch.indexOf('\n', patch.indexOf('\n') + 1) + 1;