2008-08-19 19:53:29 -04:00
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GPLRIMA ; CCDCCR/GPL - RIM REPORT ROUTINES; 6/6/08
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;;0.1;CCDCCR;nopatch;noreleasedate
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;Copyright 2008 WorldVistA. Licensed under the terms of the GNU
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;General Public License See attached copy of the License.
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;
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;This program is free software; you can redistribute it and/or modify
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;it under the terms of the GNU General Public License as published by
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;the Free Software Foundation; either version 2 of the License, or
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;(at your option) any later version.
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;
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;This program is distributed in the hope that it will be useful,
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;but WITHOUT ANY WARRANTY; without even the implied warranty of
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;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;GNU General Public License for more details.
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;
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;You should have received a copy of the GNU General Public License along
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;with this program; if not, write to the Free Software Foundation, Inc.,
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;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
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;
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; THESE ROUTINES EXAMINE ONE OR MORE, UP TO ALL, OF THE PATIENTS ON THE
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; SYSTEM TO DETERMINE HOW COMPLETE THE RESULTING CCR OR CCD WOULD BE FOR
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; THESE PATIENTS. IT BEGINS TO MEASURE "HL7 RIM COHERENCE" WHICH IS HOW USEFUL
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; THE VARIABLES WILL BE TO A RIM-MODELED APPLICATION AFTER THEY ARE
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; CONVEYED VIA THE CCR OR CCD.
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; FACTORS THAT AFFECT RIM COHERENCE INCLUDE:
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; 1. THE PRESENSE OF CLINICAL DATA IN A SECTION
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; 2. ARE THE DATA ELEMENTS TIME-BOUND
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; 3. ARE THE DATA ELEMENTS CODED WITH SNOMED OR LOINC ETC
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; 4. ARE SOURCE ACTORS ASSOCIATED WITH THE DATA ELEMENTS
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; 5. ARE ACTORS IDENTIFIED REGARDING THEIR ROLE
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; .. AND OTHER FACTORS YET TO BE DETERMINED
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;
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; SINCE THESE MEASUREMENTS ARE DONE AT THE VARIABLE LEVEL, THEY
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; REFLECT ON RIM COHERENCE WHETHER THE CCR OR THE CCD IS USED FOR
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; CONVEYANCE TO THE RIM APPLICATION.
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;
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;
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ANALYZE(BEGDFN,DFNCNT) ; RIM COHERANCE ANALYSIS ROUTINE
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; BEGINS AT BEGDFN AND GOES FOR DFNCNT PATIENTS
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; TO RESUME AT NEXT PATIENT, USE BEGDFN=""
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; USE RESET^GPLRIMA TO RESET TO TOP OF PATIENT LIST
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;
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N RIMARY,RIMTMP,RIMI,RIMDFN,RATTR
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N CCRGLO
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D ASETUP ; SET UP VARIABLES AND GLOBALS
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D AINIT ; INITIALIZE ATTRIBUTE VALUE TABLE
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I '$D(@RIMBASE@("RESUME")) S @RIMBASE@("RESUME")=$O(^DPT(0)) ; FIRST TIME
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S RESUME=@RIMBASE@("RESUME") ; WHERE WE LEFT OFF LAST RUN
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S RIMDFN=BEGDFN ; BEGIN WITH THE BEGDFN PATIENT
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I RIMDFN="" S RIMDFN=RESUME
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2008-08-22 11:52:42 -04:00
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I +RIMDFN=0 D Q ; AT THE END OF THE PATIENTS
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2008-08-19 19:53:29 -04:00
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. W "END OF PATIENT LIST, CALL RESET^GPLRIMA",!
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2008-08-22 11:52:42 -04:00
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F RIMI=1:1:DFNCNT D Q:+RIMDFN=0 ; FOR DFNCNT NUMBER OF PATIENTS OR END
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2008-08-19 19:53:29 -04:00
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. D CCRRPC^GPLCCR(.CCRGLO,RIMDFN,"CCR","","","") ;PROCESS THE CCR
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. W RIMDFN,!
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. K @RIMBASE@("VARS",RIMDFN) ; CLEAR OUT OLD VARS
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. ;
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. ; COPY ALL THE VARIABLES TO THE RIM MAP AREA INDEXED BY PATIENT
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. ;
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. I $D(^TMP("GPLCCR",$J,"PROBVALS",1)) D ; PROBLEM VARS EXISTS
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. . M @RIMBASE@("VARS",RIMDFN,"PROBLEMS")=^TMP("GPLCCR",$J,"PROBVALS")
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. I $D(^TMP("GPLCCR",$J,"VITALS",1)) D ; VITALS VARS EXISTS
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. . M @RIMBASE@("VARS",RIMDFN,"VITALS")=^TMP("GPLCCR",$J,"VITALS")
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. I $D(^TMP("GPLCCR",$J,"MEDICATIONS",1)) D ; MEDS VARS EXISTS
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. . M @RIMBASE@("VARS",RIMDFN,"MEDS")=^TMP("GPLCCR",$J,"MEDICATIONS")
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2008-08-29 13:48:03 -04:00
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. K ^TMP("GPLCCR",$J) ; KILL WORK AREA FOR CCR BUILDING
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2008-08-19 19:53:29 -04:00
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. ;
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. ; EVALUATE THE VARIABLES AND CREATE AN ATTRIBUTE MAP
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. ;
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. S RATTR=$$SETATTR(RIMDFN) ; SET THE ATTRIBUTE STRING BASED ON THE VARS
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. S @RIMBASE@("ATTR",RIMDFN)=RATTR ; SAVE THE ATRIBUTES FOR THIS PAT
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. ;
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. ; INCREMENT THE COUNT OF PATIENTS WITH THESE ATTRIBUTES IN ATTRTBL
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. ;
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2008-08-24 18:36:41 -04:00
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. ; I '$D(@RIMBASE@("ATTRTBL",RATTR)) D ; IF FIRST PAT WITH THESE ATTRS
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. ; . S @RIMBASE@("ATTRTBL",RATTR)=0 ; DEFAULT VALUE TO BE INCREMENTED
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. ; S @RIMBASE@("ATTRTBL",RATTR)=@RIMBASE@("ATTRTBL",RATTR)+1 ; INCREMENT
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. ;
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. N CATNAME,CATTBL
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. ; S CATBASE=$NA(@RIMBASE@("ANALYSIS"))
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. S CATNAME=""
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. D CPUSH(.CATNAME,RIMBASE,"RIMTBL",RIMDFN,RATTR) ; ADD TO CATEGORY
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. W "CATEGORY NAME: ",CATNAME,!
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2008-08-19 19:53:29 -04:00
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. ;
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. S RIMDFN=$O(^DPT(RIMDFN)) ; NEXT PATIENT
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S @RIMBASE@("RESUME")=RIMDFN ; WHERE WE ARE LEAVING OFF THIS RUN
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; D PARY^GPLXPATH(@RIMBASE@("ATTRTBL"))
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Q
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;
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SETATTR(SDFN) ; SET ATTRIBUTES BASED ON VARS
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N SBASE,SATTR
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S SBASE=$NA(@RIMBASE@("VARS",SDFN))
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2008-08-19 20:47:22 -04:00
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D APOST("SATTR","RIMTBL","HEADER")
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2008-08-19 19:53:29 -04:00
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I $D(@SBASE@("PROBLEMS",1)) D ;
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. D APOST("SATTR","RIMTBL","PROBLEMS")
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. W "POSTING PROBLEMS",!
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I $D(@SBASE@("VITALS",1)) D APOST("SATTR","RIMTBL","VITALS")
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I $D(@SBASE@("MEDS",1)) D APOST("SATTR","RIMTBL","MEDS")
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2008-08-24 18:36:41 -04:00
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D APOST("SATTR","RIMTBL","NOTEXTRACTED") ; OUTPUT NOT YET PRODUCED
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2008-08-19 19:53:29 -04:00
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W "ATTRIBUTES: ",SATTR,!
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Q SATTR
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;
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RESET ; KILL RESUME INDICATOR TO START OVER. ALSO KILL RIM TMP VALUES
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K ^TMP("GPLRIM","RESUME")
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K ^TMP("GPLRIM")
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Q
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;
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2008-08-24 18:36:41 -04:00
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CLIST ; LIST THE CATEGORIES
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;
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I '$D(RIMBASE) D ASETUP ; FOR COMMAND LINE CALLS
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N CLBASE,CLNUM,ZI,CLIDX
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S CLBASE=$NA(@RIMBASE@("RIMTBL","CATS"))
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S CLNUM=@CLBASE@(0)
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F ZI=1:1:CLNUM D ; LOOP THROUGH THE CATEGORIES
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. S CLIDX=@CLBASE@(ZI)
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. W "(",$P(@CLBASE@(CLIDX),"^",1)
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. W ":",$P(@CLBASE@(CLIDX),"^",2),") "
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. W CLIDX,!
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; D PARY^GPLXPATH(CLBASE)
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Q
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;
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CPUSH(CATRTN,CBASE,CTBL,CDFN,CATTR) ; ADD PATIENTS TO CATEGORIES
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; AND PASS BACK THE NAME OF THE CATEGORY TO WHICH THE PATIENT
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; WAS ADDED IN CATRTN, WHICH IS PASSED BY REFERENCE
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; CBASE IS WHERE TO PUT THE CATEGORIES PASSED BY NAME
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; CTBL IS THE NAME OF THE TABLE USED TO CREATE THE ATTRIBUTES,
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; PASSED BY NAME AND USED TO CREATE CATEGORY NAMES IE "@CTBL_X"
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; WHERE X IS THE CATEGORY NUMBER. CTBL(0) IS THE NUMBER OF CATEGORIES
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; CATBL(X)=CATTR STORES THE ATTRIBUTE IN THE CATEGORY
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; CDFN IS THE PATIENT DFN, CATTR IS THE ATTRIBUTE STRING
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; THE LIST OF PATIENTS IN A CATEGORY IS STORED INDEXED BY CATEGORY
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; NUMBER IE CTBL_X(CDFN)=""
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;
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; N CCTBL,CENTRY,CNUM,CCOUNT,CPATLIST
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S CCTBL=$NA(@CBASE@(CTBL,"CATS"))
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W "CBASE: ",CCTBL,!
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;
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I '$D(@CCTBL@(CATTR)) D ; FIRST PATIENT IN THIS CATEGORY
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. D PUSH^GPLXPATH(CCTBL,CATTR) ; ADD THE CATEGORY TO THE ARRAY
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. S CNUM=@CCTBL@(0) ; ARRAY ENTRY NUMBER FOR THIS CATEGORY
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. S CENTRY=CTBL_"_"_CNUM_U_0 ; TABLE ENTRY DEFAULT
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. S @CCTBL@(CATTR)=CENTRY ; DEFAULT NON INCREMENTED TABLE ENTRY
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. ; NOTE THAT P1 IS THE CATEGORY NAME MADE UP OF THE TABLE NAME
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. ; AND CATGORY ARRAY NUMBER. P2 IS THE COUNT WHICH IS INITIALLY 0
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;
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S CCOUNT=$P(@CCTBL@(CATTR),U,2) ; COUNT OF PATIENTS IN THIS CATEGORY
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S CCOUNT=CCOUNT+1 ; INCREMENT THE COUNT
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S $P(@CCTBL@(CATTR),U,2)=CCOUNT ; PUT IT BACK
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;
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S CATRTN=$P(@CCTBL@(CATTR),U,1) ; THE CATEGORY NAME WHICH IS RETURNED
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;
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S CPATLIST=$NA(@CBASE@(CTBL,"PATS",CATRTN)) ; BASE OF PAT LIST FOR THIS CAT
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W "PATS BASE: ",CPATLIST,!
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2008-08-25 12:06:14 -04:00
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S @CPATLIST@(CDFN)="" ; ADD THIS PATIENT TO THE CAT PAT LIST
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2008-08-24 18:36:41 -04:00
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;
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Q
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;
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2008-08-25 12:06:14 -04:00
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CCOUNT ; RECOUNT THE CATEGORIES.. USE IN CASE OF RESTART OF ANALYZE
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;
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I '$D(RIMBASE) D ASETUP ; FOR COMMAND LINE CALLS
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N ZI,ZJ,ZCNT,ZIDX,ZCAT,ZATR,ZTOT
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S ZCBASE=$NA(@RIMBASE@("RIMTBL","CATS")) ; BASE OF CATEGORIES
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S ZPBASE=$NA(@RIMBASE@("RIMTBL","PATS")) ; BASE OF PATIENTS
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S ZTOT=0 ; INITIALIZE OVERALL TOTAL
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F ZI=1:1:@ZCBASE@(0) D ; FOR ALL CATS
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. S ZCNT=0
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. S ZATR=@ZCBASE@(ZI) ; THE ATTRIBUTE OF THE CATEGORY
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. S ZCAT=$P(@ZCBASE@(ZATR),"^",1) ; USE IT TO LOOK UP THE CATEGORY NAME
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. ; S ZIDX=$O(@ZPBASE@(ZCAT,"")) ; FIRST PATIENT IN LIST
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. ; F ZJ=0:0 D Q:$O(@ZPBASE@(ZCAT,ZIDX))="" ; ALL PATIENTS IN THE LISTS
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. ; . S ZCNT=ZCNT+1 ; INCREMENT THE COUNT
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. ; . W ZCAT," DFN:",ZIDX," COUNT:",ZCNT,!
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. ; . S ZIDX=$O(@ZPBASE@(ZCAT,ZIDX))
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. S ZCNT=$$CNTLST($NA(@ZPBASE@(ZCAT)))
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. S $P(@ZCBASE@(ZATR),"^",2)=ZCNT ; UPDATE THE COUNT IN THE CAT RECORD
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. S ZTOT=ZTOT+ZCNT
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W "TOTAL: ",ZTOT,!
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Q
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;
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CNTLST(INLST) ; RETURNS THE NUMBER OF ELEMENTS IN THE LIST
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; INLST IS PASSED BY NAME
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N ZI,ZDX,ZCOUNT
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W INLST,!
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S ZCOUNT=0
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S ZDX=""
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F ZI=$O(@INLST@(ZDX)):0 D Q:$O(@INLST@(ZDX))="" ; LOOP UNTIL THE END
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. S ZCOUNT=ZCOUNT+1
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. S ZDX=$O(@INLST@(ZDX))
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. W "ZDX:",ZDX," ZCNT:",ZCOUNT,!
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Q ZCOUNT
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;
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2008-08-26 20:27:36 -04:00
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XCPAT(CPATCAT) ; EXPORT TO FILE ALL PATIENTS IN CATEGORY CPATCAT
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;
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I '$D(RIMBASE) D ASETUP ; FOR COMMAND LINE CALLS
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N ZI,ZJ,ZC,ZPATBASE
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S ZPATBASE=$NA(@RIMBASE@("RIMTBL","PATS",CPATCAT))
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S ZI=""
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F ZJ=0:0 D Q:$O(@ZPATBASE@(ZI))="" ; TIL END
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. S ZI=$O(@ZPATBASE@(ZI))
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. D XPAT^GPLCCR(ZI,"","") ; EXPORT THE PATIENT TO A FILE
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Q
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;
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CPAT(CPATCAT) ; SHOW PATIENT DFNS FOR A CATEGORY CPATCAT
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;
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I '$D(RIMBASE) D ASETUP ; FOR COMMAND LINE CALLS
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N ZI,ZJ,ZC,ZPATBASE
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S ZC=0 ; COUNT FOR SPACING THE PRINTOUT
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S ZPATBASE=$NA(@RIMBASE@("RIMTBL","PATS",CPATCAT))
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S ZI=""
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F ZJ=0:0 D Q:$O(@ZPATBASE@(ZI))="" ; TIL END
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. S ZI=$O(@ZPATBASE@(ZI))
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. S ZC=ZC+1 ; INCREMENT OUTPUT PER LINE COUNT
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. W ZI," "
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. I ZC=10 D ; NEW LINE
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. . S ZC=0
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. . W !
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Q
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;
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2008-08-19 19:53:29 -04:00
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APUSH(AMAP,AVAL) ; ADD AVAL TO ATTRIBUTE MAP AMAP (AMAP PASSED BY NAME)
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; AMAP IS FORMED FOR ARRAY ACCESS: AMAP(0) IS THE COUNT
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; AND AMAP(N)=AVAL IS THE NTH AVAL
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; ALSO HASH ACCESS AMAP(AVAL)=N WHERE N IS THE ASSIGNED ORDER OF THE
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; MAP VALUE. INSTANCES OF THE MAP WILL USE $P(X,U,N)=AVAL TO PLACE
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; THE ATTRIBUTE IN ITS RIGHT PLACE. THE ATTRIBUTE VALUE IS STORED
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; SO THAT DIFFERENT MAPS CAN BE AUTOMATICALLY CROSSWALKED
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;
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I '$D(@AMAP) D ; IF THE MAP DOES NOT EXIST
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. S @AMAP@(0)=0 ; HAS ZERO ELEMENTS
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S @AMAP@(0)=@AMAP@(0)+1 ;INCREMENT ELEMENT COUNT
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S @AMAP@(@AMAP@(0))=AVAL ; ADD THE VALUE TO THE ARRAY
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S @AMAP@(AVAL)=@AMAP@(0) ; ADD THE VALUE TO THE HASH WITH ARRAY REF
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Q
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;
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ASETUP ; SET UP GLOBALS AND VARS RIMBASE AND RIMTBL
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I '$D(RIMBASE) S RIMBASE=$NA(^TMP("GPLRIM"))
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I '$D(@RIMBASE) S @RIMBASE=""
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2008-08-24 18:36:41 -04:00
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I '$D(RIMTBL) S RIMTBL=$NA(^TMP("GPLRIM","RIMTBL","TABLE")) ; ATTR TABLE
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S ^TMP("GPLRIM","TABLES","RIMTBL")=RIMTBL ; TABLE OF TABLES
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2008-08-19 19:53:29 -04:00
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Q
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;
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AINIT ; INITIALIZE ATTRIBUTE TABLE
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I '$D(RIMBASE) D ASETUP ; FOR COMMAND LINE CALLS
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K @RIMTBL
|
2008-08-24 18:36:41 -04:00
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D APUSH(RIMTBL,"EXTRACTED")
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D APUSH(RIMTBL,"NOTEXTRACTED")
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2008-08-19 19:53:29 -04:00
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D APUSH(RIMTBL,"HEADER")
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D APUSH(RIMTBL,"NOPCP")
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D APUSH(RIMTBL,"PCP")
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D APUSH(RIMTBL,"PROBLEMS")
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D APUSH(RIMTBL,"PROBCODE")
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D APUSH(RIMTBL,"PROBNOCODE")
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D APUSH(RIMTBL,"PROBDATE")
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|
|
D APUSH(RIMTBL,"PROBNODATE")
|
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|
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D APUSH(RIMTBL,"VITALS")
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D APUSH(RIMTBL,"VITALSCODE")
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D APUSH(RIMTBL,"VITALSNOCODE")
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D APUSH(RIMTBL,"VITALSDATE")
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|
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|
D APUSH(RIMTBL,"VITALSNODATE")
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|
|
|
D APUSH(RIMTBL,"MEDS")
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|
|
|
D APUSH(RIMTBL,"MEDSCODE")
|
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|
D APUSH(RIMTBL,"MEDSNOCODE")
|
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D APUSH(RIMTBL,"MEDSDATE")
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D APUSH(RIMTBL,"MEDSNODATE")
|
|
|
|
|
Q
|
|
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|
|
;
|
|
|
|
|
APOST(PRSLT,PTBL,PVAL) ; POST AN ATTRIBUTE PVAL TO PRSLT USING PTBL
|
|
|
|
|
; PSRLT AND PTBL ARE PASSED BY NAME. PVAL IS A STRING
|
|
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|
; PTBL IS THE NAME OF A TABLE IN @RIMBASE@("TABLES") - "RIMTBL"=ALL VALUES
|
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|
|
; PVAL WILL BE PLACED IN THE STRING PRSLT AT $P(X,U,@PTBL@(PVAL))
|
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|
I '$D(RIMBASE) D ASETUP ; FOR COMMANDLINE PROCESSING
|
|
|
|
|
N USETBL
|
2008-08-22 11:52:42 -04:00
|
|
|
I '$D(@RIMBASE@("TABLES",PTBL)) D Q ; NO TABLE
|
2008-08-19 19:53:29 -04:00
|
|
|
. W "ERROR NO SUCH TABLE",!
|
|
|
|
|
S USETBL=@RIMBASE@("TABLES",PTBL)
|
|
|
|
|
S $P(@PRSLT,U,@USETBL@(PVAL))=PVAL
|
|
|
|
|
Q
|
