318 lines
12 KiB
Mathematica
318 lines
12 KiB
Mathematica
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C0CDOM ; GPL - DOM PROCESSING ROUTINES ;6/6/11 17:05
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;;0.1;C0C;nopatch;noreleasedate;Build 38
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;Copyright 2011 George Lilly. Licensed under the terms of the GNU
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;General Public License See attached copy of the License.
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;
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;This program is free software; you can redistribute it and/or modify
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;it under the terms of the GNU General Public License as published by
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;the Free Software Foundation; either version 2 of the License, or
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;(at your option) any later version.
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;
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;This program is distributed in the hope that it will be useful,
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;but WITHOUT ANY WARRANTY; without even the implied warranty of
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;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;GNU General Public License for more details.
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;
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;You should have received a copy of the GNU General Public License along
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;with this program; if not, write to the Free Software Foundation, Inc.,
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;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
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;
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Q
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;
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DOMO(ZOID,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; RECURSIVE ROUTINE TO POPULATE
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; THE XPATH INDEX ZXIDX, PASSED BY NAME
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; THE XPATH ARRAY XPARY, PASSED BY NAME
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; ZOID IS THE STARTING OID
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; ZPATH IS THE STARTING XPATH, USUALLY "/"
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; ZNUM IS THE MULTIPLE NUMBER [x], USUALLY NULL WHEN ON THE TOP NODE
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; ZREDUX IS THE XPATH REDUCTION STRING, TAKEN OUT OF EACH XPATH IF PRESENT
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I $G(ZREDUX)="" S ZREDUX=""
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N NEWPATH,NARY ; NEWPATH IS AN XPATH NARY IS AN NHIN MUMPS ARRAY
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N NEWNUM S NEWNUM=""
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I $G(ZNUM)>0 S NEWNUM="["_ZNUM_"]"
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S NEWPATH=ZPATH_"/"_$$TAG(ZOID)_NEWNUM ; CREATE THE XPATH FOR THIS NODE
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I $G(ZREDUX)'="" D ; REDUX PROVIDED?
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. N GT S GT=$P(NEWPATH,ZREDUX,2)
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. I GT'="" S NEWPATH=GT
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S @ZXIDX@(NEWPATH)=ZOID ; ADD THE XPATH FOR THIS NODE TO THE XPATH INDEX
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N GA D ATT("GA",ZOID) ; GET ATTRIBUTES FOR THIS NODE
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I $D(GA) D ; PROCESS THE ATTRIBUTES
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. N ZI S ZI=""
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. F S ZI=$O(GA(ZI)) Q:ZI="" D ; FOR EACH ATTRIBUTE
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. . N ZP S ZP=NEWPATH_"@"_ZI ; PATH FOR ATTRIBUTE
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. . S @ZXPARY@(ZP)=GA(ZI) ; ADD THE ATTRIBUTE XPATH TO THE XP ARRAY
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. . I GA(ZI)'="" D ADDNARY(ZP,GA(ZI)) ; ADD THE NHIN ARRAY VALUE
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N GD D DATA("GD",ZOID) ; SEE IF THERE IS DATA FOR THIS NODE
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I $D(GD(2)) D ;
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. M @ZXPARY@(NEWPATH)=GD ; IF MULITPLE DATA MERGE TO THE ARRAY
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E I $D(GD(1)) D ;
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. S @ZXPARY@(NEWPATH)=GD(1) ; IF SINGLE VALUE, ADD TO ARRAY
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. I GD(1)'="" D ADDNARY(NEWPATH,GD(1)) ; ADD TO NHIN ARRAY
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N ZFRST S ZFRST=$$FIRST(ZOID) ; SET FIRST CHILD
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I ZFRST'=0 D ; THERE IS A CHILD
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. N ZNUM
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. N ZMULT S ZMULT=$$ISMULT(ZFRST) ; IS FIRST CHILD A MULTIPLE
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. D DOMO(ZFRST,NEWPATH,ZNARY,ZXIDX,ZXPARY,$S(ZMULT:1,1:""),ZREDUX) ; THE CHILD
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N GNXT S GNXT=$$NXTSIB(ZOID)
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I $$TAG(GNXT)'=$$TAG(ZOID) S ZNUM="" ; RESET COUNTING AFTER MULTIPLES
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I GNXT'=0 D ;
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. N ZMULT S ZMULT=$$ISMULT(GNXT) ; IS THE SIBLING A MULTIPLE?
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. I (ZNUM="")&(ZMULT) D ; SIBLING IS FIRST OF MULTIPLES
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. . N ZNUM S ZNUM=1 ;
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. . D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; DO NEXT SIB
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. E D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,$S(ZNUM>0:ZNUM+1,1:""),ZREDUX) ; SIB
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Q
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;
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ADDNARY(ZXP,ZVALUE) ; ADD AN NHIN ARRAY VALUE TO ZNARY
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;
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; IF ZATT=1 THE ARRAY IS ADDED AS ATTRIBUTES
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;
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N ZZI,ZZJ,ZZN
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S ZZI=$P(ZXP,"/",1) ; FIRST PIECE OF XPATH ARRAY
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I ZZI="" Q ; DON'T ADD THIS ONE .. PROBABLY THE //results NODE
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S ZZJ=$P(ZXP,ZZI_"/",2) ; REST OF XPATH ARRAY
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S ZZJ=$TR(ZZJ,"/",".") ; REPLACE / WITH .
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I ZZI'["]" D ; A SINGLETON
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. S ZZN=1
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E D ; THERE IS AN [x] OCCURANCE
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. S ZZN=$P($P(ZZI,"[",2),"]",1) ; PULL OUT THE OCCURANCE
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. S ZZI=$P(ZZI,"[",1) ; TAKE OUT THE [X]
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I ZZJ'="" D ; TIME TO ADD THE VALUE
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. S @ZNARY@(ZZI,ZZN,ZZJ)=ZVALUE
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Q
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;
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PARSE(INXML,INDOC) ;CALL THE MXML PARSER ON INXML, PASSED BY NAME
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; INDOC IS PASSED AS THE DOCUMENT NAME - DON'T KNOW WHERE TO STORE THIS NOW
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; EXTRINSIC WHICH RETURNS THE DOCID ASSIGNED BY MXML
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;Q $$EN^MXMLDOM(INXML)
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Q $$EN^MXMLDOM(INXML,"W")
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;
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ISMULT(ZOID) ; RETURN TRUE IF ZOID IS ONE OF A MULTIPLE
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N ZN
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;I $$TAG(ZOID)["entry" B
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S ZN=$$NXTSIB(ZOID)
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I ZN'="" Q $$TAG(ZOID)=$$TAG(ZN) ; IF TAG IS THE SAME AS NEXT SIB TAG
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Q 0
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;
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FIRST(ZOID) ;RETURNS THE OID OF THE FIRST CHILD OF ZOID
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Q $$CHILD^MXMLDOM(C0CDOCID,ZOID)
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;
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PARENT(ZOID) ;RETURNS THE OID OF THE PARENT OF ZOID
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Q $$PARENT^MXMLDOM(C0CDOCID,ZOID)
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;
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ATT(RTN,NODE) ;GET ATTRIBUTES FOR ZOID
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S HANDLE=C0CDOCID
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K @RTN
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D GETTXT^MXMLDOM("A")
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Q
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;
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TAG(ZOID) ; RETURNS THE XML TAG FOR THE NODE
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;I ZOID=149 B ;GPLTEST
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N X,Y
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S Y=""
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S X=$G(C0CCBK("TAG")) ;IS THERE A CALLBACK FOR THIS ROUTINE
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I X'="" X X ; EXECUTE THE CALLBACK, SHOULD SET Y
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I Y="" S Y=$$NAME^MXMLDOM(C0CDOCID,ZOID)
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Q Y
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;
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NXTSIB(ZOID) ; RETURNS THE NEXT SIBLING
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Q $$SIBLING^MXMLDOM(C0CDOCID,ZOID)
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;
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DATA(ZT,ZOID) ; RETURNS DATA FOR THE NODE
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;N ZT,ZN S ZT=""
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;S C0CDOM=$NA(^TMP("MXMLDOM",$J,C0CDOCID))
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;Q $G(@C0CDOM@(ZOID,"T",1))
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S ZN=$$TEXT^MXMLDOM(C0CDOCID,ZOID,ZT)
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Q
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;
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OUTXML(ZRTN,INID) ; USES C0CMXMLB (MXMLBLD) TO OUTPUT XML FROM AN MXMLDOM
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;
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S C0CDOCID=INID
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D START^C0CMXMLB($$TAG(1),,"G")
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D NDOUT($$FIRST(1))
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D END^C0CMXMLB ;END THE DOCUMENT
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M @ZRTN=^TMP("MXMLBLD",$J)
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K ^TMP("MXMLBLD",$J)
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Q
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;
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NDOUT(ZOID) ;CALLBACK ROUTINE - IT IS RECURSIVE
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N ZI S ZI=$$FIRST(ZOID)
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I ZI'=0 D ; THERE IS A CHILD
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. N ZATT D ATT("ZATT",ZOID) ; THESE ARE THE ATTRIBUTES MOVED TO ZATT
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. D MULTI^C0CMXMLB("",$$TAG(ZOID),.ZATT,"NDOUT^C0CMXML(ZI)") ;HAVE CHILDREN
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E D ; NO CHILD - IF NO CHILDREN, A NODE HAS DATA, IS AN ENDPOINT
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. ;W "DOING",ZOID,!
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. N ZD D DATA("ZD",ZOID) ;NODES WITHOUT CHILDREN HAVE DATA
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. N ZATT D ATT("ZATT",ZOID) ;ATTRIBUTES
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. D ITEM^C0CMXMLB("",$$TAG(ZOID),.ZATT,$G(ZD(1))) ;NO CHILDREN
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I $$NXTSIB(ZOID)'=0 D ; THERE IS A SIBLING
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. D NDOUT($$NXTSIB(ZOID)) ;RECURSE FOR SIBLINGS
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Q
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;
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WNHIN(ZDFN) ; WRITES THE XML OUTPUT OF GET^NHINV TO AN XML FILE
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;
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N GN,GN2
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D GET^NHINV(.GN,ZDFN) ; EXTRACT THE XML
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S GN2=$NA(@GN@(1))
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W $$OUTPUT^C0CXPATH(GN2,"nhin_"_ZDFN_".xml","/home/wvehr3-09/")
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Q
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;
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; EXAMPLE OF NHIN ARRAY FORMAT - THIS IS AN OUTPUT OF DOMO ABOVE WHEN RUN
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; AGAINST THE OUTPUT OF THE GET^NHINV ROUTINE. (THIS IS NOT REAL PATIENT DATA)
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;
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;GNARY("med",1,"doses.dose@dose")=10
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;GNARY("med",1,"doses.dose@noun")="TABLET"
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;GNARY("med",1,"doses.dose@route")="PO"
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;GNARY("med",1,"doses.dose@schedule")="QD"
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;GNARY("med",1,"doses.dose@units")="MG"
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;GNARY("med",1,"doses.dose@unitsPerDose")=1
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;GNARY("med",1,"facility@code")=100
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;GNARY("med",1,"facility@name")="VOE OFFICE INSTITUTION"
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;GNARY("med",1,"form@value")="TAB"
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;GNARY("med",1,"id@value")="1N;O"
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;GNARY("med",1,"location@code")=5
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;GNARY("med",1,"location@name")="3 WEST"
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;GNARY("med",1,"name@value")="LISINOPRIL TAB"
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;GNARY("med",1,"orderID@value")=294
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;GNARY("med",1,"ordered@value")=3110531.001233
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;GNARY("med",1,"orderingProvider@code")=63
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;GNARY("med",1,"orderingProvider@name")="KING,MATTHEW MICHAEL"
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;GNARY("med",1,"products.product.class@code")="ACE INHIBITORS"
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;GNARY("med",1,"products.product.vaGeneric@code")=1990
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;GNARY("med",1,"products.product.vaGeneric@name")="LISINOPRIL"
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;GNARY("med",1,"products.product.vaGeneric@vuid")=4019380
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;GNARY("med",1,"products.product.vaProduct@code")=8118
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;GNARY("med",1,"products.product.vaProduct@name")="LISINOPRIL 10MG TAB"
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;GNARY("med",1,"products.product.vaProduct@vuid")=4008593
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;GNARY("med",1,"products.product@code")=6174
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;GNARY("med",1,"products.product@name")="LISINOPRIL 10MG U/D"
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;GNARY("med",1,"products.product@role")="D"
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;GNARY("med",1,"sig")="10MG BY MOUTH EVERY DAY"
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;GNARY("med",1,"sig@xml:space")="preserve"
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;GNARY("med",1,"status@value")="active"
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;GNARY("med",1,"type@value")="OTC"
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;GNARY("med",1,"vaType@value")="N"
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;
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; DOMI is an extrinsic to insert NHIN ARRAY FORMAT arrays into the DOM
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; it returns 0 or 1 based on success.
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;
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; INARY is passed by name and has the format shown above
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; HANDLE is the document number in the DOM (both MXML and EWD DOMs will
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; be supported eventually - initial implementation is for MXML
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;
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; PARENT is the node id or tag of the parent under which the DOM will
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; be populated. If it is numeric, it is a node. If it is a string, the DOM
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; will be searched to find the tag. If not found and there is no root,
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; it will be inserted as the root. If not found and there is a root, it
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; will be inserted under the root.
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;
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; For the above example the call would be OK=$$DOMI("GNARY",0,"results")
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; because "results" is the root tag. Use OUTXML to render the xml from
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; the DOM.
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;
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DOMI(INARY,HANDLE,PARENT) ; EXTRINSIC TO INSERT NHIN ARRAYS TO A DOM
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;
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N ZPARNODE
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S (SUCCESS,LEVEL,LEVEL(0),NODE)=0
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I '$D(INARY) Q 0 ; NO ARRAY PASSED
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I '$D(HANDLE) S HANDLE=$$NEWDOM() ; MAKE A NEW DOM
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I +$G(PARENT)>0 S ZPARNODE=PARENT ; WE HAVE BEEN PASSED A PARENT NODE ID
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E I $L(PARENT)>0 D ; TBD FIND THE PARENT IN THE DOM AND SET LEVEL
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. D STARTELE^MXMLDOM(PARENT) ; INSERT THE PARENT NODE
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. S ZPARNODE=1 ;
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; WE NOW HAVE A HANDLE AND A PARENT NODE AND LEVEL HAS BEEN SET
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D MAJOR(INARY,"",0) ; PROCESS ALL THE NODES TO BE ADDED
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I $L(PARENT)>0 D ENDELE^MXMLDOM(PARENT) ; CLOSE OUT THE PARENT NODE
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Q 1 ; SUCCESS
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;
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MAJOR(ZARY,ZTAG,ZNUM) ; RECURSIVE ROUTINE FOR INTERMEDIATE NODES
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N ZI S ZI=""
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F S ZI=$O(@ZARY@(ZI)) Q:ZI="" D ; FOR EACH SECTION
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. N ZN S ZN=0
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. F S ZN=$O(@ZARY@(ZI,ZN)) Q:ZN="" D ; FOR EACH MULTIPLE
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. . N ZS S ZS=""
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. . I $O(@ZARY@(ZI,ZN,ZS))'["." D ; END NODES HERE
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. . . N NEWARY
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. . . S NEWARY=$NA(@ZARY@(ZI,ZN))
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. . . D MINOR("NEWARY") ; INSERT THE END NODES
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. . E F S ZS=$O(@ZARY@(ZI,ZN,ZS)) Q:ZS="" D ; FOR EACH STRING
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. . . I ZS["." D ; INTERMEDIATE NODE FOUND
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. . . . W !,"IM:",ZS
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. . . W !,ZI,":",ZN,":",ZS_" : ",@ZARY@(ZI,ZN,ZS)
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Q
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;
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MINOR(ZINARY) ; DOES THE WORK FOR END NODES, HANDLES ATTRIBUTES
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;
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N ZZI S ZZI=""
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F S ZZI=$O(@ZINARY@(ZZI)) Q:ZZI="" D ;
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. W !,"MINOR",ZZI,":",@ZINARY@(ZZI)
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Q
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;
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EXPAND(ZZOUT,ZZIN) ; EXPANDS NHIN ARRAY FORMAT TO AN EXPANDED
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; CONSISTENT FORMAT
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; GNARY("patient",1,"facilities[2].facility@code")="050"
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; becomes G2ARY("patient",1,"facilities",2,"facility@",1,"code")="050"
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; for easier processing (this is fileman format genius)
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; basically removes the dot notation from the strings
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;
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N ZZI
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S ZZI=""
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F S ZZI=$O(@ZZIN@(ZZI)) Q:ZZI="" D ;
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. N ZZN S ZZN=0
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. F S ZZN=$O(@ZZIN@(ZZI,ZZN)) Q:ZZN="" D ;
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. . N ZZS S ZZS=""
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. . N GA ;PUSH STACK
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. . F S ZZS=$O(@ZZIN@(ZZI,ZZN,ZZS)) Q:ZZS="" D ;
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. . . K GA ; NEW STACK
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. . . D PUSH^C0CXPATH("GA",ZZI_"^"_ZZN) ; PUSH PARENT
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. . . N ZZV ; PLACE TO STASH THE VALUE
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. . . S ZZV=@ZZIN@(ZZI,ZZN,ZZS) ; VALUE
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. . . N GK ; COUNTER
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. . . F GK=1:1:$L(ZZS,".") D ; FOR EACH INTERMEDIATE NODE
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. . . . N ZZN2 S ZZN2=1 ; DEFAULT IF NO [X]
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. . . . N GM S GM=$P(ZZS,".",GK) ; TAG
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. . . . I GM["[" D ; IT'S A MULTIPLE
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. . . . . S ZZN2=$P($P(GM,"[",2),"]",1) ; PULL OUT THE NUMBER
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. . . . . S GM=$P(GM,"[",1) ; PULL OUT THE TAG
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|
|
. . . . I GM["@" D ; IT'S GOT ATTRIBUTES
|
||
|
|
. . . . . N GM2 S GM2=$P(GM,"@",2) ; PULLOUT THE ATTRIBUTE NAME
|
||
|
|
. . . . . D PUSH^C0CXPATH("GA",$P(GM,"@",1)_"@"_"^"_ZZN2) ; PUSH THE TAG
|
||
|
|
. . . . . D PUSH^C0CXPATH("GA",GM2_"^"_ZZN2)
|
||
|
|
. . . . E D PUSH^C0CXPATH("GA",GM_"^"_ZZN2) ;
|
||
|
|
. . . S GA(GA(0))=$P(GA(GA(0)),"^",1)_"^" ; GET RID OF THE LAST "1"
|
||
|
|
. . . N GZI S GZI="" ; STRING FOR THE INDEX
|
||
|
|
. . . F GK=1:1:GA(0) D ; TIME TO REVERSE POP THE TAGS
|
||
|
|
. . . . S GM=$P(GA(GK),"^",1) ; THE TAG
|
||
|
|
. . . . S ZZN2=$P(GA(GK),"^",2) ; THE NUMBER IF ANY
|
||
|
|
. . . . I ZZN2="" S GZI=GZI_""""_GM_"""" ; FOR THE LAST ONE
|
||
|
|
. . . . E S GZI=GZI_""""_GM_""""_","_ZZN2_"," ; FOR THE REST
|
||
|
|
. . . S GZI2=ZZOUT_"("_GZI_")" ; INCLUDE THE ARRAY NAME
|
||
|
|
. . . W !,GZI
|
||
|
|
. . . S @GZI2=ZZV ; REMEMBER THE VALUE?
|
||
|
|
Q
|
||
|
|
;
|
||
|
|
POP(OSTR,ISTR) ; EXTRINSIC WHICH RETURNS TRUE IF ISTR IS EMPTY
|
||
|
|
; IF ISTR IS NOT EMPTY, LOOKS FOR "." AND "@" AND RETURNS
|
||
|
|
; xxx,1,yyyetc for xxx.yyyetc and xx@,1,yyy for xxx@yyyetc
|
||
|
|
; OSTR IS PASSED BY REFERENCE AND CONTAINS yyyetc
|
||
|
|
I $L(ISTR)=0 Q 1 ; WE ARE DONE
|
||
|
|
N ZG,ZN,ZR
|
||
|
|
S ZN=1
|
||
|
|
I ISTR["." D ;
|
||
|
|
. S ZG=$P(ISTR,".",1)
|
||
|
|
. S OSTR=$P(ISTR,".",2)
|
||
|
|
. S ZR=ZG_","_ZN_","_OSTR
|
||
|
|
Q ZR
|
||
|
|
;
|
||
|
|
NEWDOM() ; extrinsic which creates a new DOM and returns the HANDLE
|
||
|
|
N CBK,SUCCESS,LEVEL,NODE,HANDLE
|
||
|
|
K ^TMP("MXMLERR",$J)
|
||
|
|
L +^TMP("MXMLDOM",$J):5
|
||
|
|
E Q 0
|
||
|
|
S HANDLE=$O(^TMP("MXMLDOM",$J,""),-1)+1,^(HANDLE)=""
|
||
|
|
L -^TMP("MXMLDOM",$J)
|
||
|
|
Q HANDLE
|
||
|
|
;
|
||
|
|
|
||
|
|
|