2012-10-01 21:32:46 -04:00
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C0CRXN ; CCDCCR/GPL - CCR RXN utilities; 12/6/08
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2012-10-30 13:11:02 -04:00
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;;1.2;CCD/CCR GENERATION UTILITIES;;Oct 30, 2012;Build 50
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;Copyright 2009 George Lilly.
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2012-10-01 21:32:46 -04:00
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;
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2012-10-30 13:11:02 -04:00
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; This program is free software: you can redistribute it and/or modify
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; it under the terms of the GNU Affero General Public License as
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; published by the Free Software Foundation, either version 3 of the
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; License, or (at your option) any later version.
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2012-10-01 21:32:46 -04:00
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;
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2012-10-30 13:11:02 -04:00
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; This program is distributed in the hope that it will be useful,
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; but WITHOUT ANY WARRANTY; without even the implied warranty of
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; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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; GNU Affero General Public License for more details.
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2012-10-01 21:32:46 -04:00
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;
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2012-10-30 13:11:02 -04:00
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; You should have received a copy of the GNU Affero General Public License
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; along with this program. If not, see <http://www.gnu.org/licenses/>.
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2012-10-01 21:32:46 -04:00
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;
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W "This is the CCR RXNORM Utility Library ",!
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W !
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Q
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;
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EXPAND ; MAIN ROUTINE TO CREATE THE C0C RXNORM VUID EXPANSION FILE (176.112)
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; READ EACH RECORD FROM 176.111 AND USE THE VUID TO LOOK UP THE RXNORM
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; CODE FROM 176.001 (RXNORM CONCEPTS)
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; POPULATE ALL FIELDS IN 176.112 AND SET "NEW" TO "Y" IF 176.111 DOES NOT
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; ALREADY HAVE AN RXNORM CODE.
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; ADD THE RXNORM TEXT FIELD TO EVERY RECORD (NOT PRESENT IN 176.111)
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; AND COMPARE THE RXNORM TEXT FIELD WITH THE VUID TEXT FIELD, SETTING THE
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; "DIFFERENT TEXT" FIELD TO "Y" IF THERE ARE DIFFERENCES
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; USES SUPPORT ROUTINES FROM C0CRNF.m
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N C0CFDA,C0CA,C0CB,C0CC,C0CZX ;FDA WORK ARRAY, RNF ARRAYS, AND IEN ITERATOR
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N C0CFVA,C0CFRXN ; CLOSED ROOTS FOR SOURCE FILES
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N C0CF ; CLOSED ROOT FOR DESTINATION FILE
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S C0CVA=$$FILEREF^C0CRNF(176.111) ; C0C PHARMACY VA RXNORM MAPPING FILE
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S C0CFRXN=$$FILEREF^C0CRNF(176.001) ; CLOSED ROOT FOR RXNORM CONCEPT FILE
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S C0CF=$$FILEREF^C0CRNF(176.112) ; C0C RXNORM VUID MAPPING EXPANSION FILE
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W C0CVA,C0CFRXN,C0CF,!
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S C0CZX=0
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S (HASRXN,NORXN,NOVUID,RXFOUND,RXMATCH,TXTMATCH)=0 ; INITIALIZE COUNTERS
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F S C0CZX=$O(^C0CCODES(176.111,C0CZX)) Q:+C0CZX=0 D ; FOR EVERY RECORD
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. K C0CA,C0CB,C0CC ; CLEAR ARRAYS
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. D FIELDS^C0CRNF("C0CC",176.112) ;GET FIELD NAMES FOR OUTPUT FILE
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. D GETN1^C0CRNF("C0CA",176.111,C0CZX,"","ALL") ;GET THE FIELDS
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. I $$ZVALUE("MEDIATION CODE")="" D
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. . S NORXN=NORXN+1 ;
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. E D ; PROCESS MEDIATION CODE
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. . S HASRXN=HASRXN+1
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. . D SETFDA("MEDIATION CODE",$$ZVALUE("MEDIATION CODE")) ;
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. I $$ZVALUE("VUID")="" D ; BAD RECORD
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. . S NOVUID=NOVUID+1
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. . ;D SETFDA("VUID",$$ZVALUE("VUID"))
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. E D SETFDA("VUID TEXT",$$ZVALUE("VUID TEXT"))
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. ;ZWR C0CA
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. D GETN1^C0CRNF("C0CB",176.001,$$ZVALUE("VUID"),"VUID","ALL")
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. I $$ZVALUE("RXCUI","C0CB")'="" D ; RXNORM FOUND
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. . S RXFOUND=RXFOUND+1
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. . I $$ZVALUE("MEDIATION CODE")="" D ; THIS IS A NEW CODE
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. . . D SETFDA("MEDIATION CODE",$$ZVALUE("RXCUI","C0CB"))
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. . . D SETFDA("NEW","Y") ;FLAG RECORD HAS HAVING NEW RXNORM
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. . W "RXNORM=",$$ZVALUE("RXCUI","C0CB")," ",$$ZVALUE("STR","C0CB"),!
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. . W "VUID TEXT: ",$$ZVALUE("VUID TEXT"),!
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. . I $$ZVALUE("VUID TEXT")=$$ZVALUE("STR","C0CB") S TXTMATCH=TXTMATCH+1
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. . E D ;
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. . . S ZZ=$$ZVALUE("VUID TEXT")_"^"_$$ZVALUE("STR","C0CB")
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. . . D PUSH^GPLXPATH("NOMATCH",ZZ)
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. . . D SETFDA("RXNORM TEXT",$$ZVALUE("STR","C0CB")) ;
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. . . D SETFDA("DIFFERENT TEXT","Y") ;FLAG RECORD FOR DIFFERENT TEXT
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. I $$ZVALUE("MEDIATION CODE")=$$ZVALUE("RXCUI","C0CB") D ;
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. . S RXMATCH=RXMATCH+1
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. . W "VUID=",$$ZVALUE("VUID")," MATCH RXNORM=",$$ZVALUE("MEDIATION CODE"),!
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. D CLEAN^DILF ; MAKE SURE WE ARE CLEANED UP
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. S C0CFDA(176.112,"+"_C0CZX_",",.01)=$$ZVALUE("VUID") ; NEW VUID RECORD
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. D UPDATE^DIE("","C0CFDA")
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. I $D(^TMP("DIERR",$J)) S $EC=",U1,"
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W "HAS RXN=",HASRXN,!
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W "NO RXN=",NORXN,!
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W "NO VUID=",NOVUID,!
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W "RXNORM FOUND=",RXFOUND,!
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W "RXNORM MATCHES:",RXMATCH,!
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W "TEXT MATCHES:",TXTMATCH,!
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Q
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;
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EXP2 ; ROUTINE TO CREATE 176.113 C0C RXNORM VUID MAPPING DISCREPANCIES FILE
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; CROSS CHECKS THE NATIONAL DRUG FILE AND THE VA MAPPING FILE AGAINST
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; THE UMLS RXNORM DATABASE
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; THIS ROUTINE HAS BEEN ENHANCED TO ALSO CHECK THE 50.416 DRUG INGREDIENT
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; FILE AND TREAT VUIDS FOUND THERE LIKE THE ONES BEING FOUND IN THE NDF
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; IF THE VUID EXISISTS IN ALL THREE FILES, THE RXNORM CODE MATCHES IN
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; THE VA MAPPING FILE AND THE TEXT STRINGS ARE THE SAME, THE VUID IS INCLUDED
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; IN THE FILE BUT NO FLAGS ARE SET
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; IF THE VUID IS MISSING FROM THE NATIONAL DRUG FILE NDF=N
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; (IF THE VUID IS MISSING FROM THE NDF, IT IS CHECKED IN THE DRUG INGREDIENT
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; FILE, AND IF FOUND, THE FLAG IS NOT SET. IN THIS CASE THE TEXT FROM THE
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; DRUG INGREDIENT FILE IS USED FOR COMPARISONS)
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; IF THE VUID IS MISSING FROM THE VA MAPPING FILE VAMAP=N
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; IF THE VUID IS PRESENT IN THE VA MAPPING FILE, BUT THE RXNORM
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; CODE IS MISSING IN THAT FILE, VARXN=N
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; IF THE TEXT STRINGS DO NOT MATCH EXACTLY, TXTM=N AND ALL THREE STRINGS
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; ARE SHOWN; NDF TEXT=NDF TEXT STRING, VA MAP TEXT=VA MAPPING TEXT STRING
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; RXNORM TEXT=RXNORM TEXT STRING
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; THE FILE IS KEYED ON VUID AND WOULD USUALLY BE SORTED BY VUID
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; THE OBJECTIVE IS TO SEE IF NDF (50.68) AND VA MAPPING (176.111) HAVE
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; ALL THE VUID CODES THAT ARE IN THE UMLS RXNORM DATABASE
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N C0CFDA,C0CA,C0CB,C0CC,C0CZX ;FDA WORK ARRAY, RNF ARRAYS, AND IEN ITERATOR
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N C0CFVA,C0CFRXN ; CLOSED ROOTS FOR SOURCE FILES
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N C0CF ; CLOSED ROOT FOR DESTINATION FILE
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S C0CVA=$$FILEREF^C0CRNF(176.111) ; C0C PHARMACY VA RXNORM MAPPING FILE
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S C0CFRXN=$$FILEREF^C0CRNF(176.001) ; CLOSED ROOT FOR RXNORM CONCEPT FILE
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;S C0CF=$$FILEREF^C0CRNF(176.113) ; C0C RXNORM VUID MAPPING ADDITIONAL FILE
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W C0CVA,C0CFRXN,! ;C0CF,!
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S C0CZX=0
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S (NDFVCNT,NDFTCNT,NDFNO)=0 ; COUNTERS FOR NDF TESTS
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S (VAVCNT,VATCNT,VARCNT,VANO)=0 ; COUNTERS FOR VA MAPPING FILE TESTS
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F S C0CZX=$O(^C0CRXN(176.001,"VUID",C0CZX)) Q:+C0CZX=0 D ; FOR EVERY VUID
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. K C0CA,C0CB,C0CC,C0CD ; CLEAR ARRAYS
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. D FIELDS^C0CRNF("C0CC",176.113) ;GET FIELD NAMES FOR OUTPUT FILE
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. D GETN1^C0CRNF("C0CA",176.001,C0CZX,"VUID","ALL") ;GET FROM RXNORM FILE
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. D GETN1^C0CRNF("C0CB",176.111,C0CZX,"B","ALL") ;GET FROM VA MAPPING FILE
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. D GETN1^C0CRNF("C0CD",50.68,C0CZX,"AVUID","ALL") ;GET FROM NDF
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. D GETN1^C0CRNF("C0CE",50.416,C0CZX,"AVUID","ALL") ;GET FROM DRUG INGREDIENTS
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. ;D SETFDA("VUID",$$ZVALUE("CODE")) ;SET THE VUID CODE
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. D SETFDA("RXNORM",$$ZVALUE("RXCUI")) ;SET THE RXNORM CODE
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. D SETFDA("RXNORM TEXT",$$ZVALUE("STR")) ;SET THE RXNORM TEXT
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. ;VA MAPPING FILE TESTS
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. I $$ZVALUE("VUID","C0CB")=C0CZX D ; VUID FOUND
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. . S VAVCNT=VAVCNT+1 ;INCREMENT COUNT
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. . I $$ZVALUE("STR")'=$$ZVALUE("VUID TEXT","C0CB") D ;TEXT MISMATCH
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. . . S VATCNT=VATCNT+1 ; INCREMENT VA TEXT MISMATCH COUNT
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. . . D SETFDA("TXTM","N") ;MARK THAT TEXT DOESN'T MATCH
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. . . D SETFDA("VA MAP TEXT",$$ZVALUE("VUID TEXT","C0CB")) ; SET VA MAP TEXT
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. E D ; VUID NOT FOUND
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. . S VANO=VANO+1
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. . D SETFDA("VAMAP","N") ;MARK AS MISSING FROM VA MAPPING FILE
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. ; NATIONAL DRUG FILE TESTS
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. I ($$ZVALUE("VUID","C0CD")=C0CZX)!($$ZVALUE("VUID","C0CE")=C0CZX) D ;
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. . ;FOUND IN NATIONAL DRUG FILE OR DRUG INGREDIENT FILE
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. . S NDFVCNT=NDFVCNT+1 ;INCREMENT VUID FOUND COUNT
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. . I $$ZVALUE("NAME","C0CD")'=$$ZVALUE("STR") D ;NDF TEXT DOESN'T MATCH
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. . . I $$ZVALUE("NAME","C0CE")'=$$ZVALUE("STR") D ;DRUG ING FILE ALSO
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. . . . S NDFTCNT=NDFTCNT+1 ; INCREMENT MISMATCHED NDF TEXT COUNT
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. . . . D SETFDA("TXTM","N") ; SET TEXT MATCH FLAG TO N
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. . . . D SETFDA("NDF TEXT",$$ZVALUE("NAME","C0CD")) ;POST THE TEXT
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. . . . D SETFDA("NAT DRUG TEXT",$$ZVALUE("NAME","C0CE")) ;POST TEXT
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. E D ;
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. . D SETFDA("NDF","N") ;MARK AS MISSING
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. . S NDFNO=NDFNO+1 ;INCREMENT MISSING COUNT
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. D CLEAN^DILF ; MAKE SURE WE ARE CLEANED UP
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. S C0CFDA(176.113,"+"_C0CZX_",",.01)=C0CZX ; NEW VUID RECORD
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. D UPDATE^DIE("","C0CFDA")
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. I $D(^TMP("DIERR",$J)) S $EC=",U1,"
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W "VA MAPPING VUID COUNT: ",VAVCNT,!
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W "VA MAPPING MISSING: ",VANO,!
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W "VA MAPPING TEXT MISMATCH: ",VATCNT,!
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W "NDF VUID COUNT: ",NDFVCNT,!
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W "NDF MISSING: ",NDFNO,!
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W "NDF TEXT MISMATCH: ",NDFTCNT,!
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Q
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CHKNDF ; ROUTINE TO CHECK THE NATIONAL DRUG FILE WITH THE UMLS RXNORM DB
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; USING THE AVUID INDEX, READS ALL VUID CODES IN ^PSNDF(50.68),
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; CHECKS TO SEE IF THE CODE IS IN 176.001, AND CREATES A RECORD
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; IN 176.114
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; THE OBJECTIVE IS TO SEE IF ^PSNDF(50.68) HAS ALL THE VUID CODES IN THE
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; UMLS RXNORM DATABASE AND IF THE TEXT FIELDS MATCH
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; ALSO CAPTURES THE RXNORM CODE MAPPING
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; CHKNDF2 WILL CHECK THE OTHER DIRECTION, STARTING WITH THE 176.001 VUID INDEX
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; THIS ROUTINE ALSO CHECKS IF THE VUID CODE IS IN 176.111 AND IF NOT
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; SETS NOTMAPPED=Y
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N C0CFDA,C0CA,C0CB,C0CC,C0CZX ;FDA WORK ARRAY, RNF ARRAYS, AND IEN ITERATOR
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N C0CFVA,C0CFRXN,C0CPSNDF ; CLOSED ROOTS FOR SOURCE FILES
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N C0CF ; CLOSED ROOT FOR DESTINATION FILE
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S C0CPSNDF=$$FILEREF^C0CRNF(50.68) ; NDF CLOSED ROOT REFERENCE
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S C0CVA=$$FILEREF^C0CRNF(176.111) ; C0C PHARMACY VA RXNORM MAPPING FILE
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S C0CFRXN=$$FILEREF^C0CRNF(176.001) ; CLOSED ROOT FOR RXNORM CONCEPT FILE
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;S C0CF=$$FILEREF^C0CRNF(176.113) ; C0C RXNORM VUID MAPPING ADDITIONAL FILE
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W C0CVA,C0CFRXN,! ;C0CF,!
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S C0CZX=0
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S (FOUND,MISSING)=0
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S (NOVUID,VMATCH,NOMATCH,MISSING,FOUND,TXTMATCH,NOTM,NVAM)=0 ; COUNTERS
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F S C0CZX=$O(^PSNDF(50.68,"AVUID",C0CZX)) Q:+C0CZX=0 D ; FOR EVERY VUID
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. K C0CA,C0CB,C0CC,C0CD ; CLEAR ARRAYS
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. ;D FIELDS^C0CRNF("C0CC",176.113) ;GET FIELD NAMES FOR OUTPUT FILE
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. D GETN1^C0CRNF("C0CA",50.68,C0CZX,"AVUID","ALL") ;GET THE FIELDS
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. I $$ZVALUE("VUID")="" D ; ERROR, SHOULD NOT HAPPEN
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. . S NOVUID=NOVUID+1 ; FLAG THE ERROR
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. . D PUSH^GPLXPATH("NOVUID",C0CZX) ; RECORD THE VUID
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. D GETN1^C0CRNF("C0CD",176.001,C0CZX,"VUID","ALL") ;TRY RXNORM DB
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. I $$ZVALUE("CODE","C0CD")=C0CZX D ; FOUND IN RXNORM
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. . S VMATCH=VMATCH+1 ; COUNT OF PSNDF VUIDS FOUND IN RXNORM
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. . I $$ZVALUE("NAME")=$$ZVALUE("STR","C0CD") D ;TEXT MATCHES
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. . . S TXTMATCH=TXTMATCH+1 ; COUNT IT
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. . E D ; TEXT DOESN'T MATCH
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. . . S NOTM=NOTM+1 ;NO TEXT MATCH COUNTER
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. . . S ZV=$$ZVALUE("NAME")_"^"_$$ZVALUE("STR","C0CD")
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. . . W ZV,!
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. . . D PUSH^GPLXPATH("TXTNM",ZV) ; RECORD THE TXT MISMATCH
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. E S NOMATCH=NOMATCH+1 ; NOT FOUND IN RXNORM
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. D GETN1^C0CRNF("C0CB",176.111,C0CZX,"B","ALL") ;TRY TO GET FROM 176.111
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. I $$ZVALUE("VUID","C0CB")="" D ; VUID NOT FOUND
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. . ;W "NOT FOUND: ",C0CZX," ",$$ZVALUE("STR")," ",$$ZVALUE("RXCUI"),!
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. . S MISSING=MISSING+1
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. . D PUSH^GPLXPATH("MISSING",C0CZX) ;MISSING FROM MAPPING FILE
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. E D ; FOUND IN VA MAPPING FILE
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. . S FOUND=FOUND+1
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. . I $$ZVALUE("VUID TEXT","C0CB")'=$$ZVALUE("NAME") D ; TEXT DOESN'T MATCH
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. . . S NVAM=NVAM+1 ; MAPPING FILE TEXT IS DIFFERENT THAN NDF
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. . . S ZY=$$ZVALUE("VUID TEXT","C0CB")_"^"_$$ZVALUE("NAME") ;BOTH STRINGS
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. . . W "VA: ",ZY,!
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. . . D PUSH^GPLXPATH("NVAM",ZY) ;SAVE IT
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W "MISSING IN MAPPING FILE: ",MISSING,!
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W "FOUND IN MAPPING FILE: ",FOUND,!
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W "FOUND IN RXNORM: ",VMATCH,!
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W "NOT FOUND IN RXNORM: ",NOMATCH,!
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W "ERRORS: ",NOVUID,!
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Q
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;
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2012-10-30 13:11:02 -04:00
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D
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2012-10-01 21:32:46 -04:00
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. I $$ZVALUE("MEDIATION CODE")="" D
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. . S NORXN=NORXN+1 ;
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. E D ; PROCESS MEDIATION CODE
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. . S HASRXN=HASRXN+1
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. . D SETFDA("MEDIATION CODE",$$ZVALUE("MEDIATION CODE")) ;
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. I $$ZVALUE("VUID")="" D ; BAD RECORD
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. . S NOVUID=NOVUID+1
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. . ;D SETFDA("VUID",$$ZVALUE("VUID"))
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. E D SETFDA("VUID TEXT",$$ZVALUE("VUID TEXT"))
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2012-10-30 13:11:02 -04:00
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. ;ZWR C0CA
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2012-10-01 21:32:46 -04:00
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. D GETN1^C0CRNF("C0CB",176.001,$$ZVALUE("VUID"),"VUID","ALL")
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. I $$ZVALUE("RXCUI","C0CB")'="" D ; RXNORM FOUND
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. . S RXFOUND=RXFOUND+1
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. . I $$ZVALUE("MEDIATION CODE")="" D ; THIS IS A NEW CODE
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. . . D SETFDA("MEDIATION CODE",$$ZVALUE("RXCUI","C0CB"))
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. . . D SETFDA("NEW","Y") ;FLAG RECORD HAS HAVING NEW RXNORM
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. . W "RXNORM=",$$ZVALUE("RXCUI","C0CB")," ",$$ZVALUE("STR","C0CB"),!
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. . W "VUID TEXT: ",$$ZVALUE("VUID TEXT"),!
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. . I $$ZVALUE("VUID TEXT")=$$ZVALUE("STR","C0CB") S TXTMATCH=TXTMATCH+1
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. . E D ;
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. . . D PUSH^GPLXPATH("NOMATCH",$$ZVALUE("VUID TEXT")_"^"_$$ZVALUE("STR","C0CB"))
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. . . D SETFDA("RXNORM TEXT",$$ZVALUE("STR","C0CB")) ;
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. . . D SETFDA("DIFFERENT TEXT","Y") ;FLAG RECORD FOR DIFFERENT TEXT
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. I $$ZVALUE("MEDIATION CODE")=$$ZVALUE("RXCUI","C0CB") D ;
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. . S RXMATCH=RXMATCH+1
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. . W "VUID=",$$ZVALUE("VUID")," MATCH RXNORM=",$$ZVALUE("MEDIATION CODE"),!
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. D CLEAN^DILF ; MAKE SURE WE ARE CLEANED UP
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. S C0CFDA(176.112,"+"_C0CZX_",",.01)=$$ZVALUE("VUID") ; NEW VUID RECORD
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. D UPDATE^DIE("","C0CFDA")
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2012-10-30 13:11:02 -04:00
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. I $D(^TMP("DIERR",$J)) S $EC=",U1,"
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2012-10-01 21:32:46 -04:00
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W "HAS RXN=",HASRXN,!
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W "NO RXN=",NORXN,!
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W "NO VUID=",NOVUID,!
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W "RXNORM FOUND=",RXFOUND,!
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W "RXNORM MATCHES:",RXMATCH,!
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W "TEXT MATCHES:",TXTMATCH,!
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Q
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SETFDA(C0CSN,C0CSV) ; INTERNAL ROUTINE TO MAKE AN FDA ENTRY FOR FIELD C0CSN
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; TO SET TO VALUE C0CSV.
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; C0CFDA,C0CA,C0CZX ARE ASSUMED FROM THE CALLING ROUTINE
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; C0CSN,C0CSV ARE PASSED BY VALUE
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;
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N C0CSI,C0CSJ
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S C0CSI=$$ZFILE(C0CSN,"C0CC") ; FILE NUMBER
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S C0CSJ=$$ZFIELD(C0CSN,"C0CC") ; FIELD NUMBER
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S C0CFDA(C0CSI,"+"_C0CZX_",",C0CSJ)=C0CSV
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Q
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ZFILE(ZFN,ZTAB) ; EXTRINSIC TO RETURN FILE NUMBER FOR FIELD NAME PASSED
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; BY VALUE IN ZFN. FILE NUMBER IS PIECE 1 OF C0CA(ZFN)
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; IF ZTAB IS NULL, IT DEFAULTS TO C0CA
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I '$D(ZTAB) S ZTAB="C0CA"
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N ZR
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I $D(@ZTAB@(ZFN)) S ZR=$P(@ZTAB@(ZFN),"^",1)
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E S ZR=""
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Q ZR
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ZFIELD(ZFN,ZTAB) ;EXTRINSIC TO RETURN FIELD NUMBER FOR FIELD NAME PASSED
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; BY VALUE IN ZFN. FILE NUMBER IS PIECE 2 OF C0CA(ZFN)
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; IF ZTAB IS NULL, IT DEFAULTS TO C0CA
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I '$D(ZTAB) S ZTAB="C0CA"
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N ZR
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I $D(@ZTAB@(ZFN)) S ZR=$P(@ZTAB@(ZFN),"^",2)
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E S ZR=""
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Q ZR
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;
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ZVALUE(ZFN,ZTAB) ;EXTRINSIC TO RETURN VALUE FOR FIELD NAME PASSED
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; BY VALUE IN ZFN. FILE NUMBER IS PIECE 3 OF C0CA(ZFN)
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; IF ZTAB IS NULL, IT DEFAULTS TO C0CA
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I '$D(ZTAB) S ZTAB="C0CA"
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N ZR
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I $D(@ZTAB@(ZFN)) S ZR=$P(@ZTAB@(ZFN),"^",3)
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E S ZR=""
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Q ZR
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;
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