VistA-ccr/p/GPLLABS.m

GPLALABS ; CCDCCR/GPL - CCR/CCD PROCESSING FOR LAB RESULTS ; 10/01/08
 ;;0.3;CCDCCR;nopatch;noreleasedate
 ;Copyright 2008 WorldVistA.  Licensed under the terms of the GNU
 ;General Public License See attached copy of the License.
 ;
 ;This program is free software; you can redistribute it and/or modify
 ;it under the terms of the GNU General Public License as published by
 ;the Free Software Foundation; either version 2 of the License, or
 ;(at your option) any later version.
 ;
 ;This program is distributed in the hope that it will be useful,
 ;but WITHOUT ANY WARRANTY; without even the implied warranty of
 ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 ;GNU General Public License for more details.
 ;
 ;You should have received a copy of the GNU General Public License along
 ;with this program; if not, write to the Free Software Foundation, Inc.,
 ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
           ;
EXTRACT(ILXML,DFN,OLXML) ; EXTRACT LABS INTO THE C0CLVAR GLOBAL
 ;
 ; LABXML AND LABOUTXML ARE PASSED BY NAME SO GLOBALS CAN BE USED
 ;
 ;
 ;
 D GHL7 ; GET HL7 MESSAGE FOR THIS PATIENT
 S C0CLB=$NA(^TMP("GPLCCR",$J,"RESULTS")) ; BASE GLB FOR LABS VARS
 K @C0CLB ; CLEAR OUT OLD VARS IF ANY
 S C0CSILENT=1 ; SURPRESS LISTING
 D LIST ; EXTRACT THE VARIABLES
 K C0CSILENT ; RESET SILENT FLAG
 I $D(OLXML) S @OLXML@(0)=0 ; EXTRACT DOES NOT PRODUCE XML... SEE MAP^GPLLABS
 Q
     ;
GHL7 ; GET HL7 MESSAGE FOR LABS FOR THIS PATIENT
 ; N C0CPTID,C0CSPC,C0CSDT,C0CEDT,C0CR
 ; SET UP FOR LAB API CALL
 S C0CPTID=$$SSN^CCRDPT(DFN) ; GET THE SSN FOR THIS PATIENT
 I C0CPTID="" D  Q  ; NO SSN, COMPLAIN AND QUIT
 . W "LAB LOOKUP FAILED, NO SSN",!
 S C0CSPC="*" ; LOOKING FOR ALL LABS
 D DT^DILF(,"T-5000",.C0CSDT) ; START DATE LONG AGO TO GET EVERYTHING
 D DT^DILF(,"T",.C0CEDT) ; END DATE TODAY TO GET EVERYTHING
 S C0CR=$$GCPR^LA7QRY(C0CPTID,C0CSDT,C0CEDT,C0CSPC,C0CSPC) ; CALL LAB LOOKUP
 Q
 ;
LIST ; LIST THE HL7 MESSAGE
 ;
 ; N C0CI,C0CJ,C0COBT,C0CHB,C0CVAR
 ; D EXTRACT^GPLLABS(1)
 I '$D(C0CLB) S C0CLB=$NA(^TMP("GPLCCR",$J,"RESULTS")) ; BASE GLB FOR LABS VARS
 I '$D(C0CSILENT) S C0CSILENT=0
 I '$D(DFN) S DFN=1 ; DEFAULT TEST PATIENT
 I '$D(^KVAI(0)) D SETTBL ; INITIALIZE LAB TABLE
 I ^KBAI(0)'="V1" D SETTBL ; NEED NEWEST VERSION
 I '$D(^TMP("HLS",$J,1)) D GHL7 ; GET HL7 MGS IF NOT ALREADY DONE
 S C0CTAB=$NA(^KBAI) ; BASE OF OBX TABLE
 S C0CHB=$NA(^TMP("HLS",$J))
 S C0CI=""
 S @C0CLB@(0)=0 ; INITALIZE RESULTS VARS COUNT
 F  S C0CI=$O(@C0CHB@(C0CI)) Q:C0CI=""  D  ; FOR ALL RECORDS IN HL7 MSG
 . K C0CVAR,XV ; CLEAR OUT VARIABLE VALUES
 . S C0CTYP=$P(@C0CHB@(C0CI),"|",1)
 . D LTYP(@C0CHB@(C0CI),C0CTYP,.C0CVAR,C0CSILENT)
 . M XV=C0CVAR ;
 . I C0CTYP="OBR" D  ; BEGINNING OF NEW SECTION
 . . S @C0CLB@(0)=@C0CLB@(0)+1 ; INCREMENT COUNT
 . . S C0CLI=@C0CLB@(0) ; INDEX FOR THIS RESULT
 . . M @C0CLB@(C0CLI)=C0CVAR ; PERSIST THE OBR VARS
 . . S C0CLOBX=0 ; MARK THE BEGINNING OF A NEW SECTION
 . I C0CTYP="OBX" D  ; SPECIAL CASE FOR OBX3
 . . ; RESULTTESTCODEVALUE
 . . ; RESULTTESTDESCRIPTIONTEXT
 . . I C0CVAR("C3")="LN" D  ; PRIMARY CODE IS LOINC
 . . . S XV("RESULTTESTCODEVALUE")=C0CVAR("C1") ; THE LOINC CODE VALUE
 . . . S XV("RESULTTESTCODINGSYSTEM")="LOINC" ; DISPLAY NAME FOR LOINC
 . . . S XV("RESULTTESTDESCRIPTIONTEXT")=C0CVAR("C2") ; DESCRIPTION TEXT
 . . E  I C0CVAR("C6")="LN" D  ; SECONDARY CODE IS LOINC
 . . . S XV("RESULTTESTCODEVALUE")=C0CVAR("C4") ; THE LOINC CODE VALUE
 . . . S XV("RESULTTESTCODINGSYSTEM")="LOINC" ; DISPLAY NAME FOR LOINC
 . . . S XV("RESULTTESTDESCRIPTIONTEXT")=C0CVAR("C5") ; DESCRIPTION TEXT
 . . E  I C0CVAR("C6")'="" D  ; NO LOINC CODES, USE SECONDARY IF PRESENT
 . . . S XV("RESULTTESTCODEVALUE")=C0CVAR("C4") ; SECONDARY CODE VALUE
 . . . S XV("RESULTTESTCODINGSYSTEM")=C0CVAR("C6") ; SECONDARY CODE NAME
 . . . S XV("RESULTTESTDESCRIPTIONTEXT")=C0CVAR("C5") ; SECONDARY TEXT
 . . E  D  ; NO SECONDARY, USE PRIMARY
 . . . S XV("RESULTTESTCODEVALUE")=C0CVAR("C1") ; PRIMARY CODE VALUE
 . . . S XV("RESULTTESTCODINGSYSTEM")=C0CVAR("C3") ; PRIMARY DISPLAY NAME
 . . . S XV("RESULTTESTDESCRIPTIONTEXT")=C0CVAR("C2") ; USE PRIMARY TEXT
 . . I 'C0CSILENT D  ;
 . . . ZWR XV
 . I C0CTYP="OBX" D  ; PROCESS TEST RESULTS
 . . I C0CLOBX=0 D  ; FIRST TEST RESULT FOR THIS SECTION
 . . . S C0CLB2=$NA(@C0CLB@(C0CLI,"M","TESTS")) ; INDENT FOR TEST RESULTS
 . . S C0CLOBX=C0CLOBX+1 ; INCREMENT TEST COUNT
 . . S @C0CLB2@(0)=C0CLOBX ; STORE THE TEST COUNT
 . . M @C0CLB2@(C0CLOBX)=XV ; PERSIST THE TEST RESULT VARIABLES
 . I 'C0CSILENT D  ;
 . . W C0CI," ",C0CTYP,!
 . ; S C0CI=$O(@C0CHB@(C0CI))
 ;K ^TMP("GPLRIM","VARS",DFN,"RESULTS")
 ;M ^TMP("GPLRIM","VARS",DFN,"RESULTS")=@C0CLB
 Q
LTYP(OSEG,OTYP,OVARA,OC0CSILENT) ;
 S OTAB=$NA(@C0CTAB@(OTYP)) ; TABLE FOR SEGMENT TYPE
 I '$D(OC0CSILENT) S C0CSILENT=0 ; NOT C0CSILENT IS DEFAULT
 E  S C0CSILENT=OC0CSILENT ; ACCEPT C0CSILENT FLAG
 I 1 D  ; FOR HL7 SEGMENT TYPE
 . S OI="" ; INDEX INTO FIELDS IN SEG
 . F  S OI=$O(@OTAB@(OI)) Q:OI=""  D  ; FOR EACH FIELD OF THE SEGMENT
 . . S OTI=$P(@OTAB@(OI),"^",1) ; TABLE INDEX
 . . S OVAR=$P(@OTAB@(OI),"^",4) ; CCR VARIABLE IF DEFINED
 . . S OV=$P(OSEG,"|",OTI+1) ; PULL OUT VALUE
 . . I $P(OI,";",2)'="" D  ; THIS IS DEFINING A SUB-VALUE
 . . . S OI2=$P(OTI,";",2) ; THE SUB-INDEX
 . . . S OV=$P(OV,"^",OI2) ; PULL OUT SUB-VALUE
 . . I OVAR'="" S OVARA(OVAR)=OV ; PASS BACK VARIABLE AND VALUE
 . . I 'C0CSILENT D  ; PRINT OUTPUT IF C0CSILENT IS FALSE
 . . . I OV'="" W OI_": "_$P(@OTAB@(OI),"^",3),": ",OVAR,": ",OV,!
 Q
LOBX ;
 Q
 ;
SETTBL ;
 K X ; CLEAR X
 S X("PID","PID1")="1^00104^Set ID - Patient ID"
 S X("PID","PID2")="2^00105^Patient ID (External ID)"
 S X("PID","PID3")="3^00106^Patient ID (Internal ID)"
 S X("PID","PID4")="4^00107^Alternate Patient ID"
 S X("PID","PID5")="5^00108^Patient's Name"
 S X("PID","PID6")="6^00109^Mother's Maiden Name"
 S X("PID","PID7")="7^00110^Date of Birth"
 S X("PID","PID8")="8^00111^Sex"
 S X("PID","PID9")="9^00112^Patient Alias"
 S X("PID","PID10")="10^00113^Race"
 S X("PID","PID11")="11^00114^Patient Address"
 S X("PID","PID12")="12^00115^County Code"
 S X("PID","PID13")="13^00116^Phone Number - Home"
 S X("PID","PID14")="14^00117^Phone Number - Business"
 S X("PID","PID15")="15^00118^Language - Patient"
 S X("PID","PID16")="16^00119^Marital Status"
 S X("PID","PID17")="17^00120^Religion"
 S X("PID","PID18")="18^00121^Patient Account Number"
 S X("PID","PID19")="19^00122^SSN Number - Patient"
 S X("PID","PID20")="20^00123^Drivers License - Patient"
 S X("PID","PID21")="21^00124^Mother's Identifier"
 S X("PID","PID22")="22^00125^Ethnic Group"
 S X("PID","PID23")="23^00126^Birth Place"
 S X("PID","PID24")="24^00127^Multiple Birth Indicator"
 S X("PID","PID25")="25^00128^Birth Order"
 S X("PID","PID26")="26^00129^Citizenship"
 S X("PID","PID27")="27^00130^Veteran.s Military Status"
 S X("PID","PID28")="28^00739^Nationality"
 S X("PID","PID29")="29^00740^Patient Death Date/Time"
 S X("PID","PID30")="30^00741^Patient Death Indicator"
 S X("NTE","NTE1")="1^00573^Set ID - NTE"
 S X("NTE","NTE2")="2^00574^Source of Comment"
 S X("NTE","NTE3")="3^00575^Comment"
 S X("ORC","ORC1")="1^00215^Order Control"
 S X("ORC","ORC2")="2^00216^Placer Order Number"
 S X("ORC","ORC3")="3^00217^Filler Order Number"
 S X("ORC","ORC4")="4^00218^Placer Order Number"
 S X("ORC","ORC5")="5^00219^Order Status"
 S X("ORC","ORC6")="6^00220^Response Flag"
 S X("ORC","ORC7")="7^00221^Quantity/Timing"
 S X("ORC","ORC8")="8^00222^Parent"
 S X("ORC","ORC9")="9^00223^Date/Time of Transaction"
 S X("ORC","ORC10")="10^00224^Entered By"
 S X("ORC","ORC11")="11^00225^Verified By"
 S X("ORC","ORC12")="12^00226^Ordering Provider"
 S X("ORC","ORC13")="13^00227^Enterer's Location"
 S X("ORC","ORC14")="14^00228^Call Back Phone Number"
 S X("ORC","ORC15")="15^00229^Order Effective Date/Time"
 S X("ORC","ORC16")="16^00230^Order Control Code Reason"
 S X("ORC","ORC17")="17^00231^Entering Organization"
 S X("ORC","ORC18")="18^00232^Entering Device"
 S X("ORC","ORC19")="19^00233^Action By"
 S X("OBR","OBR1")="1^00237^Set ID - Observation Request"
 S X("OBR","OBR2")="2^00216^Placer Order Number"
 S X("OBR","OBR3")="3^00217^Filler Order Number"
 S X("OBR","OBR4")="4^00238^Universal Service ID"
 S X("OBR","OBR4;LOINC")="4;1^00238^Universal Service ID - LOINC^RESULTCODE"
 S X("OBR","OBR4;DESC")="4;2^00238^Universal Service ID - DESC^RESULTDESCRIPTIONTEXT"
 S X("OBR","OBR4;VACODE")="4;3^00238^Universal Service ID - VACODE"
 S X("OBR","OBR5")="5^00239^Priority"
 S X("OBR","OBR6")="6^00240^Requested Date/Time"
 S X("OBR","OBR7")="7^00241^Observation Date/Time^RESULTASSESSMENTDATETIME"
 S X("OBR","OBR8")="8^00242^Observation End Date/Time"
 S X("OBR","OBR9")="9^00243^Collection Volume"
 S X("OBR","OBR10")="10^00244^Collector Identifier"
 S X("OBR","OBR11")="11^00245^Specimen Action Code"
 S X("OBR","OBR12")="12^00246^Danger Code"
 S X("OBR","OBR13")="13^00247^Relevant Clinical Info."
 S X("OBR","OBR14")="14^00248^Specimen Rcv'd. Date/Time"
 S X("OBR","OBR15")="15^00249^Specimen Source"
 S X("OBR","OBR16")="16^00226^Ordering Provider XCN^RESULTSOURCEACTORID"
 S X("OBR","OBR17")="17^00250^Order Callback Phone Number"
 S X("OBR","OBR18")="18^00251^Placers Field 1"
 S X("OBR","OBR19")="19^00252^Placers Field 2"
 S X("OBR","OBR20")="20^00253^Filler Field 1"
 S X("OBR","OBR21")="21^00254^Filler Field 2"
 S X("OBR","OBR22")="22^00255^Results Rpt./Status Change"
 S X("OBR","OBR23")="23^00256^Charge to Practice"
 S X("OBR","OBR24")="24^00257^Diagnostic Service Sect"
 S X("OBR","OBR25")="25^00258^Result Status^RESULTSTATUS"
 S X("OBR","OBR26")="26^00259^Parent Result"
 S X("OBR","OBR27")="27^00221^Quantity/Timing"
 S X("OBR","OBR28")="28^00260^Result Copies to"
 S X("OBR","OBR29")="29^00261^Parent Number"
 S X("OBR","OBR30")="30^00262^Transportation Mode"
 S X("OBR","OBR31")="31^00263^Reason for Study"
 S X("OBR","OBR32")="32^00264^Principal Result Interpreter"
 S X("OBR","OBR33")="33^00265^Assistant Result Interpreter"
 S X("OBR","OBR34")="34^00266^Technician"
 S X("OBR","OBR35")="35^00267^Transcriptionist"
 S X("OBR","OBR36")="36^00268^Scheduled Date/Time"
 S X("OBR","OBR37")="37^01028^Number of Sample Containers"
 S X("OBR","OBR38")="38^38^01029 Transport Logistics of Collected Sample"
 S X("OBR","OBR39")="39^01030^Collector.s Comment"
 S X("OBR","OBR40")="40^01031^Transport Arrangement Responsibility"
 S X("OBR","OBR41")="41^01032^Transport Arranged"
 S X("OBR","OBR42")="42^01033^Escort Required"
 S X("OBR","OBR43")="43^01034^Planned Patient Transport Comment"
 S X("OBX","OBX1")="1^00559^Set ID - OBX"
 S X("OBX","OBX2")="2^00676^Value Type"
 S X("OBX","OBX3")="3^00560^Observation Identifier"
 S X("OBX","OBX3;C1")="3;1^00560^Observation Identifier^C1"
 S X("OBX","OBX3;C2")="3;2^00560^Observation Identifier^C2"
 S X("OBX","OBX3;C3")="3;3^00560^Observation Identifier^C3"
 S X("OBX","OBX3;C4")="3;4^00560^Observation Identifier^C4"
 S X("OBX","OBX3;C5")="3;5^00560^Observation Identifier^C5"
 S X("OBX","OBX3;C6")="3;6^00560^Observation Identifier^C6"
 S X("OBX","OBX4")="4^00769^Observation Sub-Id"
 S X("OBX","OBX5")="5^00561^Observation Results^RESULTTESTVALUE"
 S X("OBX","OBX6")="6^00562^Units^RESULTTESTUNITS"
 S X("OBX","OBX7")="7^00563^Reference Range^RESULTTESTNORMALDESCRIPTIONTEXT"
 S X("OBX","OBX8")="8^00564^Abnormal Flags"
 S X("OBX","OBX9")="9^00639^Probability"
 S X("OBX","OBX10")="10^00565^Nature of Abnormal Test"
 S X("OBX","OBX11")="11^00566^Observ. Result Status^RESULTTESTSTATUSTEXT"
 S X("OBX","OBX12")="12^00567^Date Last Normal Value"
 S X("OBX","OBX13")="13^00581^User Defined Access Checks"
 S X("OBX","OBX14")="14^00582^Date/Time of Observation^RESULTTESTDATETIME"
 S X("OBX","OBX15")="15^00583^Producer.s ID^RESULTTESTSOURCEACTORID"
 S X("OBX","OBX16")="16^00584^Responsible Observer"
 S X("OBX","OBX17")="17^00936^Observation Method"
 M ^KBAI=X ; SET VALUES IN ^KBAI
 S ^KBAI(0)="V1"
 Q
 ;