From 2af1ab957fa9af1ac8360367307dc34ad1d19ffd Mon Sep 17 00:00:00 2001 From: sam Date: Tue, 9 Apr 2013 17:31:32 +0000 Subject: [PATCH] Moved old stuff into tags for 0.02 --- .../0.02}/C0CRXN_DATA_102012_0100.gkids.tgz | Bin rxnorm/{ => tags/0.02}/C0CRXN_DEF_0002.kids | 0 rxnorm/{ => tags/0.02}/README.rxnorm | 0 rxnorm/trunk/C0CRXNLK.m | 282 ++++++++++++++++++ rxnorm/trunk/C0CRXNRD.m | 168 +++++++++++ 5 files changed, 450 insertions(+) rename rxnorm/{ => tags/0.02}/C0CRXN_DATA_102012_0100.gkids.tgz (100%) rename rxnorm/{ => tags/0.02}/C0CRXN_DEF_0002.kids (100%) rename rxnorm/{ => tags/0.02}/README.rxnorm (100%) create mode 100644 rxnorm/trunk/C0CRXNLK.m create mode 100644 rxnorm/trunk/C0CRXNRD.m diff --git a/rxnorm/C0CRXN_DATA_102012_0100.gkids.tgz b/rxnorm/tags/0.02/C0CRXN_DATA_102012_0100.gkids.tgz similarity index 100% rename from rxnorm/C0CRXN_DATA_102012_0100.gkids.tgz rename to rxnorm/tags/0.02/C0CRXN_DATA_102012_0100.gkids.tgz diff --git a/rxnorm/C0CRXN_DEF_0002.kids b/rxnorm/tags/0.02/C0CRXN_DEF_0002.kids similarity index 100% rename from rxnorm/C0CRXN_DEF_0002.kids rename to rxnorm/tags/0.02/C0CRXN_DEF_0002.kids diff --git a/rxnorm/README.rxnorm b/rxnorm/tags/0.02/README.rxnorm similarity index 100% rename from rxnorm/README.rxnorm rename to rxnorm/tags/0.02/README.rxnorm diff --git a/rxnorm/trunk/C0CRXNLK.m b/rxnorm/trunk/C0CRXNLK.m new file mode 100644 index 0000000..6d3ece2 --- /dev/null +++ b/rxnorm/trunk/C0CRXNLK.m @@ -0,0 +1,282 @@ +C0CRXNLK ; VEN/SMH - RxNorm Lookup Utilities ;2013-04-08 5:00 PM + ;;1.0;RX NORM;;Apr 25, 2012;Build 99 + ;(c) Sam Habiel 2013 + ; See accompanying license. Don't use otherwise. + ; + S IO=$P + N DIQUIET S DIQUIET=1 + D DT^DICRW + D EN^XTMUNIT($T(+0),1) + QUIT + ; +GCN2RXN(GCN) ; $$ Public - Get RxNorm CUI using GCN + ; Input: GCN by Value + ; Output: Extrinsic + S GCN=$$RJ^XLFSTR(GCN,6,0) ; pad to six digits by zeros (123 becomes 000123) + N IEN S IEN=$O(^C0CRXN(176.001,"STC","NDDF","CDC",GCN,"")) ; Get Entry + Q ^(IEN) + ; +GCN2RXNT ; @TEST - Test Get RxNorm CUI using GCN + N L F L=1:1 N LN S LN=$T(GCN2RXND+L) Q:LN["<>" Q:LN="" D + . N GCN S GCN=$P(LN,";",3) + . N RXN S RXN=$P(LN,";",4) + . D CHKEQ^XTMUNIT($$GCN2RXN(GCN),RXN,"Translation from GCN to RXCUI failed") + QUIT + ; +GCN2RXND ; @DATA - Data for Tests ;;GCN;EXPECTED RXNCUI + ;;16033;991632 + ;;8208;310429 + ;;1275;628953 + ;;18;197604 + ;;346;884173 + ;;<> + ; + ; + ; +RXN2VUI(RXNCUI) ; $$ Public - Get VUID(s) for given RXNCUI for Clinical Drug + ; Input: RXNCUI by Value + ; Output: Caret delimited extrinsic. Should not be more than 2 entries. + N C0PVUID S C0PVUID="" + N I S I="" + F S I=$O(^C0CRXN(176.001,"STX","VANDF","CD",RXNCUI,I)) Q:I="" S C0PVUID=C0PVUID_^(I)_U + S C0PVUID=$E(C0PVUID,1,$L(C0PVUID)-1) ; remove trailing ^ + ; TODO: Return only the quantified form using: + ; I $O(^C0CRXN(176.005,"RXCUIREL",RXN,"has_quantified_form","")) N QF S QF=$O(^("")) Q $O(^C0CRXN(176.001,"RXN2VUID",QF,"")) + Q C0PVUID + ; +RXN2VUIT ; @TEST - Get VUIDs given RxNorm values + N L F L=1:1 N LN S LN=$T(RXN2VUID+L) Q:LN["<>" Q:LN="" D + . N RXN S RXN=$P(LN,";",3) + . N VUIDS S VUIDS=$P(LN,";",4) + . D CHKEQ^XTMUNIT($$RXN2VUI(RXN),VUIDS,"Translation from RXNCUI to VUID failed") + QUIT + ; +RXN2VUID ; @DATA - Data items for previous test + ;;991632;4006455 + ;;310429;4002369^4013941 + ;;628953;4000874^4000856^4013966^4015798^4015799 + ;;197604;4003335^4015937 + ;;884173;4002469^4013919 + ;;<> + ; + ; + ; +VUI2VAP(VUID) ; $$ Public - Get VA Product IEN from VUID + ; Input VUID by Value + ; Output: Extrinsic + Q $$FIND1^DIC(50.68,"","QX",VUID,"AVUID") + ; +VUI2VAPT ; @TEST - Get VA Product IEN from VUID + N L F L=1:1 N LN S LN=$T(VUI2VAPD+L) Q:LN["<>" Q:LN="" D + . N VUID S VUID=$P(LN,";",3) + . N VAP S VAP=$P(LN,";",4) + . D CHKEQ^XTMUNIT($$VUI2VAP(VUID),VAP,"Translation from VUID to VA PRODUCT failed") + QUIT + ; +VUI2VAPD ; @DATA - Data for above test + ;;4006455;5932 + ;;4002369;1784 + ;;4000874;252 + ;;4003335;2756 + ;;4002469;1884 + ;;<> + ; + ; + ; +VAP2MED(VAPROD) ; $$ Public - Get Drug(s) using VA Product IEN + ; Un-Unit-testable: Drug files differ between sites. + ; Input: VA Product IEN By Value + ; OUtput: Caret delimited extrinsic + ; This code inspired from PSNAPIs + ; WHY THE HELL WOULD I USE A TEXT INDEX? + ; It's my only option. Creating new xrefs on the drug file doesn't help + ; as they are not filled out when adding a drug (IX[ALL]^DIK isn't called). + N MEDS S MEDS="" ; result + N PN,PN1 ; Product Name, abbreviated product name. + S PN=$P(^PSNDF(50.68,VAPROD,0),"^"),PN1=$E(PN,1,30) + N P50 S P50=0 ; looper through VAPN index which is DRUG file entry + F S P50=$O(^PSDRUG("VAPN",PN1,P50)) Q:'P50 D ; for each text match + . I $P(^PSDRUG(P50,"ND"),"^",3)=VAPROD S MEDS=$G(MEDS)_P50_U ; check that the VA PRODUCT pointer is the same as ours. + S:MEDS MEDS=$E(MEDS,1,$L(MEDS)-1) ; remove trailing ^ + Q MEDS + ; + ; +RXN2MEDS(RXNCUI) ; $$ Public - Convert RxNorm value to currently existing drugs in File 50. + ; Input: SCD RXNCUI + ; Output; Caret delimited extrinsic + ; Un-unit testable + N VUIDS S VUIDS=$$RXN2VUI(RXNCUI) ; Get VUID from RXNCUI + ; TODO: Decide which VUID to use! + N VAPROD S VAPROD=$$VUI2VAP(VUIDS) ; Get VA Product from VUID + N MEDS S MEDS=$$VAP2MED(VAPROD) ; Get Meds from VA Product + QUIT MEDS + ; +FDI2RXN(BASE) ; $$ Public - Get RxNorm CUI for FDB Ingredient/Base + ; ^C0CRXN(176.001,"STC","NDDF","IN","014739",1000870)=1362160 + ; Input: BASE By Value + ; Output: RxNorm CUI + S BASE=$$RJ^XLFSTR(BASE,6,0) ; pad to six digits by zeros (123 becomes 000123) + N IEN S IEN=$O(^C0CRXN(176.001,"STC","NDDF","IN",BASE,"")) Q ^(IEN) + ; +FDI2RXNT ; @TEST - Test Get RxNorm CUI for FDB Ingredient/Base + D CHKEQ^XTMUNIT($$FDI2RXN(14739),1362160,"$$FDI2RXN failed") + QUIT + ; + ; + ; +RXN2VIN(RXNCUI) ; $$ Public - Get VUID Ingredient for RxNorm CUI + ; ^C0CRXN(176.001,"STX","VANDF","IN",1366467,1008555)=4031768 + ; Input: RXNCUI By Value + ; Output: VUID + N IEN S IEN=$O(^C0CRXN(176.001,"STX","VANDF","IN",RXNCUI,"")) Q ^(IEN) + ; +RXN2VINT ; @TEST - Test Get VUID Ingredient for RxNorm CUI + D CHKEQ^XTMUNIT($$RXN2VIN(1366467),4031768,"$$RXN2VIN failed") + QUIT + ; + ; + ; +VIN2VAG(VUID) ; $$ Public - Get VA Generic for VUID Ingredient + ; Input: VUID By Value + ; Output: IEN^VA Generic Name (i.e. .01 field value) + N C0PIEN S C0PIEN=$$FIND1^DIC(50.6,"","QX",VUID,"AVUID") + N C0P01 S C0P01=$$GET1^DIQ(50.6,C0PIEN,.01) + Q C0PIEN_"^"_C0P01 + ; +VIN2VAGT ; @TEST - Test Get VA Generic for VUID Ingredient + D CHKEQ^XTMUNIT(+$$VIN2VAG(4023636),2832,"$$VIN2VAG failed") + QUIT + ; + ; + ; +FDI2VAG(BASE) ; $$ Public - Get VA Generic for FDB Ingredient/Base + ; TODO:Not tested... + ; Input: BASE By Value + ; Output: IEN^VA Generic Name (i.e. .01 field value) + Q $$VIN2VAG($$RXN2VIN($$FDI2RXN(BASE))) + ; +VIN2DIN(VUID) ; $$ Public - Get Drug Ingredient for VUID Ingredient + ; TODO:Not tested... + ; Input: VUID By Value + ; Output: IEN^Drug Ingredient Name (i.e. .01 field value) + N C0PIEN S C0PIEN=$$FIND1^DIC(50.416,"","QX",VUID,"AVUID") + N C0P01 S C0P01=$$GET1^DIQ(50.416,C0PIEN,.01) + Q C0PIEN_"^"_C0P01 + ; +FDI2DIN(BASE) ; $$ Public - Get Drug Ingredient for FDB Ingredient/Base + ; TODO:Not tested... + ; Input: BASE By Value + ; Output: IEN^Drug Ingredient Name (i.e. .01 field value) + Q $$VIN2DIN($$RXN2VIN($$FDI2RXN(BASE))) + ; +VUI2RXN(VUID) ; $$ Public - Get RXNCUI for VUID (any VUID type) + ; Input: VUID By Value + ; Output: RXNCUIs delimited by ^ + ; Get all entries whose code is the VUID and are in the VA NDF which are clinical drugs + D FIND^DIC(176.001,,"@;.01","PQX",VUID,,"CODE","I $P(^(0),U,12,13)=""VANDF^CD""") + ; Deserialise it into a single string + ; ^TMP("DILIST",4844,0)="1^*^0^" + ; ^TMP("DILIST",4844,0,"MAP")="IEN^.01" + ; ^TMP("DILIST",4844,1,0)="1006351^1364462" + N RXNS S RXNS="" + N I F I=0:0 S I=$O(^TMP("DILIST",$J,I)) Q:'I S RXNS=RXNS_$P(^(I,0),U,2)_U + S RXNS=$E(RXNS,1,$L(RXNS)-1) + QUIT RXNS + ; +MED2RXN(DA) ; $$ Public - Get RxNorm CUI for Drug + ; Input: DA - Medication IEN + ; Output: RXNCUIs delimited by ^ + N ND S ND=$G(^PSDRUG(DA,"ND")) ; ND Node + N VAP S VAP=$P(ND,U,3) ; VA Product Pointer + Q:'VAP "" ; quit if empty + N VUID S VUID=+^PSNDF(50.68,VAP,"VUID") ; Get VUID + I 'VUID S $EC=",U1," ; Must exist + Q $$VUI2RXN(VUID) + ; +MED2SCDN(DA) ; $$ Public - Medication to Semantic Clinical Drug Name + ; Input: DA - Medication IEN + ; Output: The Canonical Semantic Clinical Drug name + N RXNCUI S RXNCUI=$$MED2RXN(DA) + Q:'RXNCUI "" + N IEN S IEN=$O(^C0CRXN(176.001,"STC","RXNORM","SCD",RXNCUI,"")) ; Let's try generic drug + I 'IEN S IEN=$O(^C0CRXN(176.001,"STC","RXNORM","SBD",RXNCUI,"")) ; Let's try non-bioequivalent Brands then + I 'IEN S IEN=$O(^C0CRXN(176.001,"STC","RXNORM","GPCK",RXNCUI,"")) ; Let's try a Generic combination package + I 'IEN S IEN=$O(^C0CRXN(176.001,"STC","RXNORM","SCDF",RXNCUI,"")) ; Let's try a Clinical Drug and Form (Like Metamucil) + Q:'IEN "" ; Apparently not every VUID has a corresponding RXNCUI SCD. + Q $P(^C0CRXN(176.001,IEN,0),U,15) + ; +RXN2NDI(RXNCUI) ; $$ Public - Get NDDF Ingredient for RXNCUI + ; Input: RXNCUI By Value + ; Output: NDDF Base code + ; TODO:Not tested... + N IEN S IEN=$O(^C0CRXN(176.001,"STX","NDDF","IN",RXNCUI,"")) Q ^(IEN) + ; +VIN2NDI(VUID) ; $$ Public - Get NDDF Ingredient for VUID + ; NB: WILL ONLY WORK IF VUID IS AN INGREDIENT VUID, NOT A CLINICAL DRUG + ; Input: VUID By Value + ; Output: NDDF Base code + ; TODO:Not tested... + Q $$RXN2NDI($$VUI2RXN(VUID)) + ; + ; --- + ; +NDC2RXN(NDC) ; $$ Public - Get RxCUI given the NDC + ; NB: Will only work if passed NDC is in 5-4-2 format. + ; Input: NDC By Value in 5-4-2 Format + ; Output: RxNorm Code. + S NDC=$TR(NDC,"-") + N IEN S IEN=$O(^C0CRXN(176.002,"ASAA","RXNORM","NDC",NDC,"")) Q ^(IEN) + ; +NDC2RXNT ; @TEST - Test Get RxCUI given the NDC + D CHKEQ^XTMUNIT($$NDC2RXN("30142-0917-71"),198439,"$$NDC2RXN failed") + QUIT + ; + ; --- + ; +ISBRAND(RXN) ; $$ Public - Is this RxCUI for a brand drug? + ; Input: RxCUI + ; Output: 0 or 1 + Q ''$D(^C0CRXN(176.001,"STC","RXNORM","SBD",RXN)) +ISBRANDT ; @TEST - Test Is this RxCUI for a brand drug? + D CHKEQ^XTMUNIT($$ISBRAND(205535),1,"$$ISBRAND failed") ; Brand Prozac + D CHKEQ^XTMUNIT($$ISBRAND(310384),0,"$$ISBRAND failed") ; Generic Fluoxetine + QUIT + ; + ; --- + ; +BR2GEN(RXN) ; $$ Public - Convert Brand RxCUI to Generic RxCUI (many to 1) + ; Input: RxCUI of Brand + ; Output: RxCUI of Generic + Q $O(^C0CRXN(176.005,"B",RXN,"has_tradename","")) +BR2GENT ; @TEST - Test Convert Brand RxCUI to Generic RxCUI (many to 1) + D CHKEQ^XTMUNIT($$BR2GEN(205535),310384,"$$BR2GEN failed") + QUIT + ; + ; --- + ; +GEN2BR(RXN) ; $$ Public - Convert Generic RxCUI to Brand RxCUIs (1 to many). + N RTN S RTN="" ; Return + N I S I="" F S I=$O(^C0CRXN(176.005,"B",RXN,"tradename_of",I)) Q:'I S RTN=RTN_I_U + S RTN=$E(RTN,1,$L(RTN)-1) + Q RTN + ; +GEN2BRT ; @TEST - Test Convert Generic RxCUI to Brand RxCUIs (1 to many). + D CHKTF^XTMUNIT($$GEN2BR(310384)[205535,"$$GEN2BR failed") + QUIT + ; + ; --- + ; +RXN2BNS(RXN) ; $$ Public - Get all Brand Names associated with an RXN + N BNS S BNS="" + I $$ISBRAND(RXN) S RXN=$$BR2GEN(RXN) + N ALLBN S ALLBN=$$GEN2BR(RXN) + N BNNO F BNNO=1:1:$L(ALLBN,U) D + . N EACHBN S EACHBN=$P(ALLBN,U,BNNO) + . N BNRXCUI S BNRXCUI=$O(^C0CRXN(176.005,"B",EACHBN,"ingredient_of","")) + . Q:BNRXCUI="" + . N BNIEN S BNIEN=$O(^C0CRXN(176.001,"B",BNRXCUI,"")) + . S BNS=BNS_$P(^C0CRXN(176.001,BNIEN,0),U,15)_U + QUIT $E(BNS,1,$L(BNS)-1) +RXN2BNST ; @TEST - Test Get all Brand Names associated with an RXN + D CHKTF^XTMUNIT($$RXN2BNS(205535)["Prozac","$$RXN2BNS failed") + QUIT diff --git a/rxnorm/trunk/C0CRXNRD.m b/rxnorm/trunk/C0CRXNRD.m new file mode 100644 index 0000000..f821104 --- /dev/null +++ b/rxnorm/trunk/C0CRXNRD.m @@ -0,0 +1,168 @@ +C0CRXNRD ; VEN/SMH - RxNorm Utilities: Routine to Read RxNorm files;2013-03-06 4:32 PM + ;;2.0;RX NORM;;May 11, 2012;Build 50 + ; (C) Sam Habiel 2013 + ; See license for terms of use. + ; + W "No entry from top" Q +IMPORT(PATH) ; PUBLIC ENTRY POINT. Rest are private + I PATH="" QUIT + S U="^" + N STARTTIME S STARTTIME=$P($H,",")*24*60*60+$P($H,",",2) + D SAB(PATH),CONSO(PATH),SAT(PATH),STY(PATH),REL(PATH),DOC(PATH) + N ENDTIME S ENDTIME=$P($H,",")*24*60*60+$P($H,",",2) + W !,(ENDTIME-STARTTIME)/60_" minutes elapsed" + QUIT + ; + ; Everything is private from down on... +DELFILED(FN) ; Delete file data; PEP procedure; only for RxNorm files + ; FN is Filenumber passed by Value + QUIT:$E(FN,1,3)'=176 ; Quit if not RxNorm files + N ROOT S ROOT=$$ROOT^DILFD(FN,"",1) ; global root + N ZERO S ZERO=@ROOT@(0) ; Save zero node + S $P(ZERO,U,3,9999)="" ; Remove entry # and last edited + K @ROOT ; Kill the file -- so sad! + S @ROOT@(0)=ZERO ; It riseth again! + QUIT +GETLINES(PATH,FILENAME) ; Get number of lines in a file + D OPEN^%ZISH("FILE",PATH,FILENAME,"R") + U IO + N I,LINE + F I=1:1 R LINE:0 Q:$$STATUS^%ZISH + D CLOSE^%ZISH("FILE") + Q I-1 +CONSO(PATH,INCRES) ; Open and read concepts file: RXNCONSO.RRF + ; PATH ByVal, path of RxNorm files + ; INCRES ByVal, include restricted sources. 1 for yes, 0 for no + I PATH="" QUIT + S INCRES=+$G(INCRES) ; if not passed, becomes zero. + N FILENAME S FILENAME="RXNCONSO.RRF" + D DELFILED(176.001) ; delete data + N LINES S LINES=$$GETLINES(PATH,FILENAME) + N POP + D OPEN^%ZISH("FILE",PATH,FILENAME,"R") + IF POP D EN^DDIOL("Error reading file..., Please check...") G EX + N C0CCOUNT + F C0CCOUNT=1:1 D Q:$$STATUS^%ZISH + . U IO + . N LINE R LINE:0 + . IF $$STATUS^%ZISH QUIT + . I '(C0CCOUNT#1000) U $P W C0CCOUNT," of ",LINES," read ",! U IO ; update every 1000 + . S ^C0CRXN(176.001,C0CCOUNT,0)=$TR(LINE,"|^","^|") + . ; TODO Implement Filtering: + . ; If the source is a restricted source, decide what to do based on what's asked. + . ; N SRCIEN S SRCIEN=$$FIND1^DIC(176.003,"","QX",SAB,"B") ; SrcIEN in RXNORM SOURCES file + . ; N RESTRIC S RESTRIC=$$GET1^DIQ(176.003,SRCIEN,14,"I") ; 14 is restriction field; values 0-4 + . ; If RESTRIC is zero, then it's unrestricted. Everything else is restricted. + . ; If user didn't ask to include restricted sources, and the source is restricted, then quit + . ; I 'INCRES,RESTRIC QUIT +EX D CLOSE^%ZISH("FILE") + N DIK S DIK="^C0CRXN(176.001," D IXALL^DIK + QUIT + ; + ; +SAT(PATH) ; Open and read Concept and Atom attributes: RXNSAT.RRF + I PATH="" QUIT + N FILENAME S FILENAME="RXNSAT.RRF" + D DELFILED(176.002) ; delete data + N LINES S LINES=$$GETLINES(PATH,FILENAME) + N POP + D OPEN^%ZISH("FILE",PATH,FILENAME,"R") + IF POP W "Error reading file..., Please check...",! G EX2 + N C0CCOUNT F C0CCOUNT=1:1 Q:$$STATUS^%ZISH D + . U IO + . N LINE R LINE:0 + . IF $$STATUS^%ZISH QUIT + . I '(C0CCOUNT#1000) U $P W C0CCOUNT," of ",LINES," read ",! U IO ; update every 1000 + . ; + . ; We switch around the fields .01 and .09 because the .01 isn't always present; where as .09 is required + . N RXCUI1,ATN9 + . S RXCUI1=$P(LINE,"|",1) + . S ATN9=$P(LINE,"|",9) + . S $P(LINE,"|",1)=ATN9 + . S $P(LINE,"|",9)=RXCUI1 + . ; + . ; Save off + . S ^C0CRXN(176.002,C0CCOUNT,0)=$TR(LINE,"|^","^|") +EX2 D CLOSE^%ZISH("FILE") + N DIK S DIK="^C0CRXN(176.002," D IXALL^DIK + QUIT + ; + ; +SAB(PATH) ; Open the read RxNorm Sources file: RXNSAB.RRF + I PATH="" QUIT + N FILENAME S FILENAME="RXNSAB.RRF" + D DELFILED(176.003) ; delete data + N POP + D OPEN^%ZISH("FILE",PATH,FILENAME,"R") + IF POP W "Error reading file..., Please check...",! G EX3 + N I F I=1:1 Q:$$STATUS^%ZISH D + . U IO + . N LINE R LINE:0 + . IF $$STATUS^%ZISH QUIT + . U $P W I,! U IO ; Write I to the screen, then go back to reading the file + . ; Switch pieces 1 and 4 because 4 is always defined. Goes into .01 field. + . N VCUI S VCUI=$P(LINE,"|",1) + . N RSAB S RSAB=$P(LINE,"|",4) + . S $P(LINE,"|",1)=RSAB + . S $P(LINE,"|",4)=VCUI + . S ^C0CRXN(176.003,I,0)=$TR(LINE,"^|","|^") +EX3 D CLOSE^%ZISH("FILE") + N DIK S DIK="^C0CRXN(176.003," D IXALL^DIK + QUIT +STY(PATH) ; Open and read RxNorm Semantic types file: RXNSTY.RRF + I PATH="" QUIT + N FILENAME S FILENAME="RXNSTY.RRF" + D DELFILED(176.004) ; delete data + N LINES S LINES=$$GETLINES(PATH,FILENAME) ; Get # of lines + N POP + D OPEN^%ZISH("FILE",PATH,FILENAME,"R") + IF POP W "Error reading file..., Please check...",! G EX4 + N I F I=1:1 Q:$$STATUS^%ZISH D + . U IO + . N LINE R LINE:0 + . IF $$STATUS^%ZISH QUIT + . I '(I#1000) U $P W I," of ",LINES," read ",! U IO ; update every 1000 + . S ^C0CRXN(176.004,I,0)=$TR(LINE,"^|","|^") +EX4 D CLOSE^%ZISH("FILE") + N DIK S DIK="^C0CRXN(176.004," D IXALL^DIK + QUIT + ; +REL(PATH) ; Open and read RxNorm Relationships file: RXNREL.RRF + I PATH="" QUIT + N FILENAME S FILENAME="RXNREL.RRF" + D DELFILED(176.005) ; delete data + N LINES S LINES=$$GETLINES(PATH,FILENAME) ; Get # of lines + N POP + D OPEN^%ZISH("FILE",PATH,FILENAME,"R") + IF POP W "Error reading file..., Please check...",! G EX5 + N I F I=1:1 Q:$$STATUS^%ZISH D + . U IO + . N LINE R LINE:0 + . IF $$STATUS^%ZISH QUIT + . I '(I#1000) U $P W I," of ",LINES," read ",! U IO ; update every 1000 + . ; swap RXCUI1 location with SAB b/c SAB is required so can be .01 field + . N RXCUI1 S RXCUI1=$P(LINE,"|",1) + . N SAB S SAB=$P(LINE,"|",11) + . S $P(LINE,"|",1)=SAB + . S $P(LINE,"|",11)=RXCUI1 + . S ^C0CRXN(176.005,I,0)=$TR(LINE,"^|","|^") +EX5 D CLOSE^%ZISH("FILE") + N DIK S DIK="^C0CRXN(176.005," D IXALL^DIK + QUIT +DOC(PATH) ; Open the read RxNorm Abbreviation Documentation file: RXNDOC.RRF + I PATH="" QUIT + N FILENAME S FILENAME="RXNDOC.RRF" + D DELFILED(176.006) ; delete data + N LINES S LINES=$$GETLINES(PATH,FILENAME) ; Get # of lines + N POP + D OPEN^%ZISH("FILE",PATH,FILENAME,"R") + IF POP W "Error reading file..., Please check...",! G EX6 + N I F I=1:1 Q:$$STATUS^%ZISH D + . U IO + . N LINE R LINE:0 + . IF $$STATUS^%ZISH QUIT + . I '(I#1000) U $P W I," of ",LINES," read ",! U IO ; update every 1000 + . S ^C0CRXN(176.006,I,0)=$TR(LINE,"^|","|^") +EX6 D CLOSE^%ZISH("FILE") + N DIK S DIK="^C0CRXN(176.006," D IXALL^DIK + QUIT