2.5 version of RxNorm package
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sam
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@ -0,0 +1,11 @@
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v 2.5
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This version is a cumulative version that provides the following changes:
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- Any row in the tables with a SUPPRESS value of O, Y or E is not imported.
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This data has been deemed obsolete or unreliable and should not be used.
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- Data loader loads the data in 2 threads.
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- Unit Tests moved to the OSEHRA Unit Testing Framework
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- New APIs for translating VUIDs to RxNorm values:
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-- $$VUI2RXN^C0CRXNLK(VUID,TTY) -> VUID to RxNorm
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-- $$LVUID^C0CRXNLK(RXN) -> RxNorm to VUID
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@ -1,5 +1,5 @@
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C0CRXNAD ; VEN/SMH - Add a drug to VISTA from RxNorm;2013-04-19 5:39 PM
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;;2.3;RXNORM FOR VISTA;;Jul 22, 2014;Build 10
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;;2.5;RXNORM FOR VISTA;;Apr 27, 2016;Build 17
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; (C) 2013 Sam Habiel
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; Proprietary Code. Don't use if license terms aren't supplied.
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;
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@ -1,12 +1,12 @@
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C0CRXNLK ; VEN/SMH - RxNorm Lookup Utilities ;2014-07-22 2:27 PM
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;;2.3;RXNORM FOR VISTA;;Jul 22, 2014;Build 16
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;(c) Sam Habiel 2013
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;;2.5;RXNORM FOR VISTA;;Apr 27, 2016;Build 16
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;(c) Sam Habiel 2016
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; See accompanying license. Don't use otherwise.
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;
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S IO=$P
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N DIQUIET S DIQUIET=1
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D DT^DICRW
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D EN^XTMUNIT($T(+0),1)
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D EN^%ut($T(+0),2)
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QUIT
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;
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EXIST(RXN) ; $$ Public - Does this RxNorm CUI exist?
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@ -21,16 +21,15 @@ GCN2RXN(GCN) ; $$ Public - Get RxNorm CUI using GCN
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N IEN S IEN=$O(^C0CRXN(176.001,"STC","NDDF","CDC",GCN,"")) ; Get Entry
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Q ^(IEN)
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;
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GCN2RXNT ; @TEST - Test Get RxNorm CUI using GCN
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GCN2RXNT ; @TEST Test Get RxNorm CUI using GCN
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Q:'$D(^C0CRXN(176.001,"STC","NDDF"))
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N L F L=1:1 N LN S LN=$T(GCN2RXND+L) Q:LN["<<END>>" Q:LN="" D
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. N GCN S GCN=$P(LN,";",3)
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. N RXN S RXN=$P(LN,";",4)
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. D CHKEQ^XTMUNIT($$GCN2RXN(GCN),RXN,"Translation from GCN to RXCUI failed")
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. D CHKEQ^%ut($$GCN2RXN(GCN),RXN,"Translation from GCN to RXCUI failed")
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QUIT
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;
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GCN2RXND ; @DATA - Data for Tests ;;GCN;EXPECTED RXNCUI
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;;16033;991632
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;;8208;310429
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;;1275;628953
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;;18;197604
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@ -48,20 +47,20 @@ RXN2GCN(RXNCUI) ; $$ Public - Get GCN(s) given an RxNorm Number
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S GCNS=$E(GCNS,1,$L(GCNS)-1) ; remove trailing ^
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Q GCNS
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;
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RXN2GCNT ; @TEST - Test Get GCN from RXNCUI
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RXN2GCNT ; @TEST Test Get GCN from RXNCUI
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Q:'$D(^C0CRXN(176.001,"STX","NDDF"))
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N L F L=1:1 N LN S LN=$T(RXN2GCND+L) Q:LN["<<END>>" Q:LN="" D
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. N RXN S RXN=$P(LN,";",3)
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. N GCN S GCN=$P(LN,";",4)
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. D CHKEQ^XTMUNIT($$RXN2GCN(RXN),GCN,"Translation from RXCUI to GCN failed")
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. D CHKEQ^%ut($$RXN2GCN(RXN),GCN,"Translation from RXCUI to GCN failed")
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QUIT
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;
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;
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RXN2GCND ; @DATA - Data for Tests ;;RXNORM CUI;Expected GCN; Human Readable Drug name for dear reader
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;;998689;5145;Acetabulol 200mg tab
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;;745679;5037;Albuterol Inhaler
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;;745679;28090;Albuterol Inhaler
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;;197320;2536;Allopurinol 300mg tab
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;;993691;3948^46236;Bupropion 75mg tab
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;;993691;46236;Bupropion 75mg tab
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;;197591;3768;Diazepam 5mg tab
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;;<<END>>
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;
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@ -78,19 +77,18 @@ RXN2VUI(RXNCUI) ; $$ Public - Get VUID(s) for given RXNCUI for Clinical Drug
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; I $O(^C0CRXN(176.005,"RXCUIREL",RXN,"has_quantified_form","")) N QF S QF=$O(^("")) Q $O(^C0CRXN(176.001,"RXN2VUID",QF,""))
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Q C0PVUID
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;
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RXN2VUIT ; @TEST - Get VUIDs given RxNorm values
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RXN2VUIT ; @TEST Get VUIDs given RxNorm values
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N L F L=1:1 N LN S LN=$T(RXN2VUID+L) Q:LN["<<END>>" Q:LN="" D
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. N RXN S RXN=$P(LN,";",3)
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. N VUIDS S VUIDS=$P(LN,";",4)
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. D CHKEQ^XTMUNIT($P($$RXN2VUI(RXN),U),$P(VUIDS,U),"Translation from RXNCUI to VUID failed")
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. D CHKEQ^%ut($P($$RXN2VUI(RXN),U),$P(VUIDS,U),"Translation from RXNCUI to VUID failed")
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QUIT
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;
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RXN2VUID ; @DATA - Data items for previous test
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;;991632;4006455
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;;310429;4002369^4013941
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;;628953;4000874^4000856^4013966^4015798^4015799
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;;628953;4000856^4013966^4015798^4015799
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;;197604;4003335^4015937
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;;884173;4002469^4013919
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;;884173;4002469^4013919^4032795
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;;<<END>>
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;
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;
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@ -104,11 +102,11 @@ VUI2VAP(VUID) ; $$ Public - Get VA Product IEN(s) from VUID
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S O=$E(O,1,$L(O)-1) ; remove trailing ^
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Q O
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;
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VUI2VAPT ; @TEST - Get VA Product IEN from VUID
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VUI2VAPT ; @TEST Get VA Product IEN from VUID
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N L F L=1:1 N LN S LN=$T(VUI2VAPD+L) Q:LN["<<END>>" Q:LN="" D
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. N VUID S VUID=$P(LN,";",3)
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. N VAP S VAP=$P(LN,";",4)
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. D CHKEQ^XTMUNIT($$VUI2VAP(VUID),VAP,"Translation from VUID to VA PRODUCT failed")
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. D CHKEQ^%ut($$VUI2VAP(VUID),VAP,"Translation from VUID to VA PRODUCT failed")
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QUIT
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;
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VUI2VAPD ; @DATA - Data for above test
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@ -165,9 +163,9 @@ FDI2RXN(BASE) ; $$ Public - Get RxNorm CUI for FDB Ingredient/Base
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S BASE=$$RJ^XLFSTR(BASE,6,0) ; pad to six digits by zeros (123 becomes 000123)
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N IEN S IEN=$O(^C0CRXN(176.001,"STC","NDDF","IN",BASE,"")) Q ^(IEN)
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;
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FDI2RXNT ; @TEST - Test Get RxNorm CUI for FDB Ingredient/Base
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FDI2RXNT ; @TEST Test Get RxNorm CUI for FDB Ingredient/Base
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Q:'$D(^C0CRXN(176.001,"STC","NDDF"))
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D CHKEQ^XTMUNIT($$FDI2RXN(14739),1362160,"$$FDI2RXN failed")
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D CHKEQ^%ut($$FDI2RXN(14739),1362160,"$$FDI2RXN failed")
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QUIT
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;
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;
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@ -176,10 +174,12 @@ RXN2VIN(RXNCUI) ; $$ Public - Get VUID Ingredient for RxNorm CUI
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; ^C0CRXN(176.001,"STX","VANDF","IN",1366467,1008555)=4031768
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; Input: RXNCUI By Value
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; Output: VUID
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N IEN S IEN=$O(^C0CRXN(176.001,"STX","VANDF","IN",RXNCUI,"")) Q ^(IEN)
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N IEN S IEN=$O(^C0CRXN(176.001,"STX","VANDF","IN",RXNCUI,""))
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I IEN Q ^(IEN)
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E Q ""
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;
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RXN2VINT ; @TEST - Test Get VUID Ingredient for RxNorm CUI
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D CHKEQ^XTMUNIT($$RXN2VIN(1366467),4031768,"$$RXN2VIN failed")
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RXN2VINT ; @TEST Test Get VUID Ingredient for RxNorm CUI
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D CHKEQ^%ut($$RXN2VIN(1366467),4031768,"$$RXN2VIN failed")
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QUIT
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;
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;
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@ -191,8 +191,8 @@ VIN2VAG(VUID) ; $$ Public - Get VA Generic for VUID Ingredient
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N C0P01 S C0P01=$$GET1^DIQ(50.6,C0PIEN,.01)
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Q C0PIEN_"^"_C0P01
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;
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VIN2VAGT ; @TEST - Test Get VA Generic for VUID Ingredient
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D CHKEQ^XTMUNIT(+$$VIN2VAG(4023636),2832,"$$VIN2VAG failed")
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VIN2VAGT ; @TEST Test Get VA Generic for VUID Ingredient
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D CHKEQ^%ut(+$$VIN2VAG(4023636),2832,"$$VIN2VAG failed")
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QUIT
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;
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;
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@ -217,25 +217,31 @@ FDI2DIN(BASE) ; $$ Public - Get Drug Ingredient for FDB Ingredient/Base
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; Output: IEN^Drug Ingredient Name (i.e. .01 field value)
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Q $$VIN2DIN($$RXN2VIN($$FDI2RXN(BASE)))
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;
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VUI2RXN(VUID) ; $$ Public - Get RXNCUI for VUID (any VUID type)
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; Input: VUID By Value
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; Output: RXNCUIs delimited by ^
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; Get all entries whose code is the VUID and are in the VA NDF which are clinical drugs
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D FIND^DIC(176.001,,"@;.01","PQX",VUID,,"CODE","I $P(^(0),U,12,13)=""VANDF^CD""")
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; Deserialise it into a single string
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; ^TMP("DILIST",4844,0)="1^*^0^"
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; ^TMP("DILIST",4844,0,"MAP")="IEN^.01"
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; ^TMP("DILIST",4844,1,0)="1006351^1364462"
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N RXNS S RXNS=""
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N I F I=0:0 S I=$O(^TMP("DILIST",$J,I)) Q:'I S RXNS=RXNS_$P(^(I,0),U,2)_U
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S RXNS=$E(RXNS,1,$L(RXNS)-1)
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QUIT RXNS
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VUI2RXN(VUID,TTY) ; $$ Public Stephanie's Unified VUID searcher. Get RXNCUI given VUID
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;GIVEN A VUID IN ONE OF SEVERAL FILES RETURN THE ASSOCIATED RXNORM CODE IN 176.001
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; TTY="IN", "CD", or "PT"
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; IN = DRUG INGRIDENT FILE & VA GENERIC file
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; CD = VA PRODUCT FILE
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; PT = VA DRUG CLASS
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;
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; SAB="VANDF"
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; CODE=VUID
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;
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I $O(^C0CRXN(176.001,"STC","VANDF",TTY,VUID,"")) Q ^($O(^("")))
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Q ""
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;
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VUI2RXNT ; @TEST VUID to RxNorm CUI tests
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D CHKEQ^%ut($$VUI2RXN(4010151,"CD"),314231)
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D CHKEQ^%ut($$VUI2RXN(4020940,"IN"),16681)
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D CHKEQ^%ut($$VUI2RXN(4021568,"PT"),883)
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D CHKEQ^%ut($$VUI2RXN(1234234,"CD"),"")
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QUIT
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;
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VUI2GCN(VUID) ; $$ Public - Get GCNs for a given VUID (any VUID type)
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; Input: VUID by Value
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; Output: GCNs delimited by ^
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; TODO: Unit Test
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N RXNS S RXNS=$$VUI2RXN(VUID)
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N RXNS S RXNS=$$VUI2RXN(VUID,"AB")
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Q:RXNS="" "" ; VUID not a drug or ingredient (can be food)
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N GCNS S GCNS=""
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N I F I=1:1:$L(RXNS,U) S GCNS=GCNS_$$RXN2GCN($P(RXNS,U,I))_U
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@ -250,13 +256,16 @@ MED2RXN(DA) ; $$ Public - Get RxNorm CUI for Drug
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Q:'VAP "" ; quit if empty
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N VUID S VUID=+^PSNDF(50.68,VAP,"VUID") ; Get VUID
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I 'VUID S $EC=",U1," ; Must exist
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Q $$VUI2RXN(VUID)
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Q $$VUI2RXN(VUID,"AB")
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;
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MED2SCDN(DA) ; $$ Public - Medication to Semantic Clinical Drug Name
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; Input: DA - Medication IEN
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; Output: The Canonical Semantic Clinical Drug name
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N RXNCUI S RXNCUI=$$MED2RXN(DA)
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Q:'RXNCUI ""
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Q $$SCDNAME(RXNCUI)
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;
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SCDNAME(RXNCUI) ; $$ Public - Semantic Clinical Drug Name for RxNorm CUI
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N IEN S IEN=$O(^C0CRXN(176.001,"STC","RXNORM","SCD",RXNCUI,"")) ; Let's try generic drug
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I 'IEN S IEN=$O(^C0CRXN(176.001,"STC","RXNORM","SBD",RXNCUI,"")) ; Let's try non-bioequivalent Brands then
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I 'IEN S IEN=$O(^C0CRXN(176.001,"STC","RXNORM","GPCK",RXNCUI,"")) ; Let's try a Generic combination package
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@ -264,6 +273,15 @@ MED2SCDN(DA) ; $$ Public - Medication to Semantic Clinical Drug Name
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Q:'IEN "" ; Apparently not every VUID has a corresponding RXNCUI SCD.
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Q $P(^C0CRXN(176.001,IEN,0),U,15)
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;
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ANYNAME(RXNCUI) ; $$ Public - Get the RxNorm name, no matter what it is
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N RESULT S RESULT=""
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N TTY S TTY=""
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F S TTY=$O(^C0CRXN(176.001,"STC","RXNORM",TTY)) Q:TTY="" D Q:RESULT]""
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. N IEN S IEN=$O(^C0CRXN(176.001,"STC","RXNORM",TTY,RXNCUI,""))
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. Q:'IEN
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. S RESULT=$P(^C0CRXN(176.001,IEN,0),U,15)
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QUIT RESULT
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;
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RXN2NDI(RXNCUI) ; $$ Public - Get NDDF Ingredient for RXNCUI
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; Input: RXNCUI By Value
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; Output: NDDF Base code
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@ -275,7 +293,7 @@ VIN2NDI(VUID) ; $$ Public - Get NDDF Ingredient for VUID
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; Input: VUID By Value
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; Output: NDDF Base code
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; TODO:Not tested...
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Q $$RXN2NDI($$VUI2RXN(VUID))
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Q $$RXN2NDI($$VUI2RXN(VUID,"IN"))
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;
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; ---
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;
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@ -286,9 +304,9 @@ NDC2RXN(NDC) ; $$ Public - Get RxCUI given the NDC
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S NDC=$TR(NDC,"-")
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N IEN S IEN=$O(^C0CRXN(176.002,"ASAA","RXNORM","NDC",NDC,"")) Q ^(IEN)
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;
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NDC2RXNT ; @TEST - Test Get RxCUI given the NDC & Get RxCUI given the 50.67 NDC
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D CHKEQ^XTMUNIT($$NDC2RXN("30142-0917-71"),198439,"$$NDC2RXN failed")
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D CHKEQ^XTMUNIT($$NDC2RXN2("000031868518","VANDF"),996520,"$$NDC2RXN2 failed")
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NDC2RXNT ; @TEST Test Get RxCUI given the NDC & Get RxCUI given the 50.67 NDC
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D CHKEQ^%ut($$NDC2RXN("30142-0917-71"),198439,"$$NDC2RXN failed")
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D CHKEQ^%ut($$NDC2RXN2("000031868518","VANDF"),996520,"$$NDC2RXN2 failed")
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QUIT
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;
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NDC2RXN2(NDC,SOURCE) ; $$ Public - Get RxCUI given the source
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@ -303,9 +321,9 @@ ISBRAND(RXN) ; $$ Public - Is this RxCUI for a brand drug?
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; Input: RxCUI
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; Output: 0 or 1
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Q ''$D(^C0CRXN(176.001,"STC","RXNORM","SBD",RXN))
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ISBRANDT ; @TEST - Test Is this RxCUI for a brand drug?
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D CHKEQ^XTMUNIT($$ISBRAND(205535),1,"$$ISBRAND failed") ; Brand Prozac
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D CHKEQ^XTMUNIT($$ISBRAND(310384),0,"$$ISBRAND failed") ; Generic Fluoxetine
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ISBRANDT ; @TEST Test Is this RxCUI for a brand drug?
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D CHKEQ^%ut($$ISBRAND(205535),1,"$$ISBRAND failed") ; Brand Prozac
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D CHKEQ^%ut($$ISBRAND(310384),0,"$$ISBRAND failed") ; Generic Fluoxetine
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QUIT
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;
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; ---
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@ -314,8 +332,8 @@ BR2GEN(RXN) ; $$ Public - Convert Brand RxCUI to Generic RxCUI (many to 1)
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; Input: RxCUI of Brand
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; Output: RxCUI of Generic
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Q $O(^C0CRXN(176.005,"B",RXN,"has_tradename",""))
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BR2GENT ; @TEST - Test Convert Brand RxCUI to Generic RxCUI (many to 1)
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D CHKEQ^XTMUNIT($$BR2GEN(205535),310384,"$$BR2GEN failed")
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BR2GENT ; @TEST Test Convert Brand RxCUI to Generic RxCUI (many to 1)
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D CHKEQ^%ut($$BR2GEN(205535),310384,"$$BR2GEN failed")
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QUIT
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;
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; ---
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@ -326,8 +344,8 @@ GEN2BR(RXN) ; $$ Public - Convert Generic RxCUI to Brand RxCUIs (1 to many).
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S RTN=$E(RTN,1,$L(RTN)-1)
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Q RTN
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;
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GEN2BRT ; @TEST - Test Convert Generic RxCUI to Brand RxCUIs (1 to many).
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D CHKTF^XTMUNIT($$GEN2BR(310384)[205535,"$$GEN2BR failed")
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GEN2BRT ; @TEST Test Convert Generic RxCUI to Brand RxCUIs (1 to many).
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D CHKTF^%ut($$GEN2BR(310384)[205535,"$$GEN2BR failed")
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QUIT
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;
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; ---
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@ -344,17 +362,63 @@ RXN2BNS(RXN) ; $$ Public - Get all Brand Names associated with an RXN
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. N BNIEN S BNIEN=$O(^C0CRXN(176.001,"B",BNRXCUI,""))
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. S BNS=BNS_$P(^C0CRXN(176.001,BNIEN,0),U,15)_U
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QUIT $E(BNS,1,$L(BNS)-1)
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RXN2BNST ; @TEST - Test Get all Brand Names associated with an RXN
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D CHKTF^XTMUNIT($$RXN2BNS(205535)["Prozac","$$RXN2BNS failed")
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RXN2BNST ; @TEST Test Get all Brand Names associated with an RXN
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D CHKTF^%ut($$RXN2BNS(205535)["Prozac","$$RXN2BNS failed")
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QUIT
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;
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; ---
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;
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RXN2NDC(RXN) ; Get NDC codes for RxNorm code
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RXN2NDC(RXN) ; $$ Public - Get NDC codes for RxNorm code
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N NDCS S NDCS=""
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N I F I=0:0 S I=$O(^C0CRXN(176.002,"ASAR","RXNORM","NDC",RXN,I)) Q:'I S NDCS=NDCS_^(I)_"^"
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S $E(NDCS,$L(NDCS))=""
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QUIT NDCS
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RXN2NDCT ; @TEST - Test Get NDC codes for RxNorm code
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D CHKTF^XTMUNIT($$RXN2NDC(197379)["^"_16714003309,"$$RXN2NDC failed")
|
||||
RXN2NDCT ; @TEST Test Get NDC codes for RxNorm code
|
||||
D CHKTF^%ut($$RXN2NDC(197379)["^"_16714003309,"$$RXN2NDC failed")
|
||||
QUIT
|
||||
;
|
||||
LVUID(RXN) ; $$ Public - Locate VUID, given RxNorm. Iterative Search
|
||||
; ^C0CRXN(176.001,"STC","RXNORM","IN",46239,IEN
|
||||
N TTY S TTY=""
|
||||
N intermediateRxCUI
|
||||
N finalVUID
|
||||
i '$$EXIST(RXN) q "0^not found in RxNorm"
|
||||
;
|
||||
F S TTY=$O(^C0CRXN(176.001,"STC","RXNORM",TTY)) Q:TTY="" D q:$g(intermediateRxCUI) q:$g(finalVUID)
|
||||
. N IEN S IEN=$O(^C0CRXN(176.001,"STC","RXNORM",TTY,RXN,""))
|
||||
. I 'IEN quit ; s err="0^not found in RxNorm" quit
|
||||
. ; W ^C0CRXN(176.001,IEN,0),!
|
||||
. I TTY="BN" s intermediateRxCUI=$$BR2GEN(RXN) quit ; try searching with generic
|
||||
. I TTY="IN"!(TTY="MIN") s finalVUID=$$RXN2VIN(RXN) quit ; match VUID
|
||||
. I TTY="PIN" s intermediateRxCUI=$$formOf(RXN) quit ; try searching with ingredient
|
||||
. I TTY="SCD" d
|
||||
.. s finalVUID=$$RXN2VUI(RXN)
|
||||
.. i finalVUID="" s finalVUID=$$containerOf(RXN)
|
||||
.. I finalVUID="" s finalVUID=$$tradeName(RXN)
|
||||
. I TTY="GPCK" d
|
||||
.. s finalVUID=$$tradeName(RXN)
|
||||
i $get(intermediateRxCUI) q $$LVUID(intermediateRxCUI) ; recurse
|
||||
i $get(finalVUID) quit finalVUID
|
||||
quit "0^no mapping found in RxNorm"
|
||||
;
|
||||
formOf(RXN) ; RXN is form of result
|
||||
q $o(^C0CRXN(176.005,"B",RXN,"has_form",""))
|
||||
containerOf(RXN) ; loop through all contains and see if one hits it.
|
||||
n container
|
||||
n vuid s vuid=""
|
||||
f container=0:0 s container=$o(^C0CRXN(176.005,"B",RXN,"contains",container)) q:'container d q:$g(vuid)
|
||||
. s vuid=$$RXN2VUI(container)
|
||||
quit vuid
|
||||
tradeName(RXN) ; loop through all tradenames and see if there's a match
|
||||
n vuid s vuid=""
|
||||
n tncui f tncui=0:0 s tncui=$o(^C0CRXN(176.005,"B",RXN,"tradename_of",tncui)) q:'tncui d q:$g(vuid)
|
||||
. s vuid=$$RXN2VUI(tncui)
|
||||
quit vuid
|
||||
;
|
||||
loopVUIDs ; [Public] Paste VUIDs to get the RxNorm Numbers
|
||||
; ZEXCEPT: DTIME
|
||||
n rxn
|
||||
f r rxn:$g(DTIME,300) q:rxn="" q:rxn=$c(4) d
|
||||
. w "|"
|
||||
. w $$LVUID(rxn),"|",$$ANYNAME(rxn),!
|
||||
quit
|
||||
|
|
|
|||
|
|
@ -1,6 +1,6 @@
|
|||
C0CRXNRD ; VEN/SMH - RxNorm Utilities: Routine to Read RxNorm files;2013-11-14 1:23 PM
|
||||
;;2.3;RXNORM FOR VISTA;;Jul 22, 2014;Build 10
|
||||
; (C) Sam Habiel 2013
|
||||
;;2.5;RXNORM FOR VISTA;;Apr 27, 2016;Build 10
|
||||
; (C) Sam Habiel 2016
|
||||
; See license for terms of use.
|
||||
;
|
||||
W "No entry from top" Q
|
||||
|
|
@ -9,9 +9,10 @@ IMPORT(PATH,RESTRICTED) ; PUBLIC ENTRY POINT. Rest are private
|
|||
S RESTRICTED=$G(RESTRICTED,0)
|
||||
S U="^"
|
||||
N STARTTIME S STARTTIME=$P($H,",")*24*60*60+$P($H,",",2)
|
||||
N SABS
|
||||
D SAB(PATH,.SABS) ; Load restriction values into SAB. ; 176.006
|
||||
D CONSO(PATH,.SABS,RESTRICTED),SAT(PATH,.SABS,RESTRICTED) ; 176.001,176.002
|
||||
D SAB(PATH) ; Load restriction values into SAB. ; 176.006
|
||||
JOB SAT^C0CRXNRD(PATH,RESTRICTED) ; 176.002
|
||||
W "Jobbed off... "_$ZJOB_"."
|
||||
D CONSO(PATH,RESTRICTED) ; 176.001,176.002
|
||||
D STY(PATH),REL(PATH),DOC(PATH) ; 176.003-5
|
||||
N ENDTIME S ENDTIME=$P($H,",")*24*60*60+$P($H,",",2)
|
||||
W !,(ENDTIME-STARTTIME)/60_" minutes elapsed"
|
||||
|
|
@ -36,10 +37,11 @@ GETLINES(PATH,FILENAME) ; Get number of lines in a file
|
|||
F I=1:1 R LINE:0 Q:$$STATUS^%ZISH
|
||||
D CLOSE^%ZISH("FILE")
|
||||
Q I-1
|
||||
CONSO(PATH,SABS,RESTRICTED) ; Open and read concepts file: RXNCONSO.RRF
|
||||
CONSO(PATH,RESTRICTED) ; Open and read concepts file: RXNCONSO.RRF
|
||||
; PATH ByVal, path of RxNorm files
|
||||
; SABS ByRef, arrays of SABS(SAB)=restriction level
|
||||
; RESTRICTED ByVal, include restricted sources. 1 for yes, 0 for no
|
||||
N SABS D LOADSABS(.SABS)
|
||||
I PATH="" QUIT
|
||||
N FILENAME S FILENAME="RXNCONSO.RRF"
|
||||
D DELFILED(176.001) ; delete data
|
||||
|
|
@ -48,12 +50,17 @@ CONSO(PATH,SABS,RESTRICTED) ; Open and read concepts file: RXNCONSO.RRF
|
|||
D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
|
||||
IF POP D EN^DDIOL("Error reading file..., Please check...") G EX
|
||||
N C0CCOUNT
|
||||
N C0CSUPP S C0CSUPP=0
|
||||
F C0CCOUNT=1:1 D Q:$$STATUS^%ZISH
|
||||
. U IO
|
||||
. N LINE R LINE:0
|
||||
. IF $$STATUS^%ZISH QUIT
|
||||
. I '(C0CCOUNT#1000) U $P W C0CCOUNT," of ",LINES," read ",! U IO ; update every 1000
|
||||
. ;
|
||||
. ; If suppressed, quit
|
||||
. N SUPP S SUPP=$P(LINE,"|",17)
|
||||
. I SUPP="O"!(SUPP="Y")!(SUPP="E") S C0CSUPP=C0CSUPP+1 QUIT
|
||||
. ;
|
||||
. ; Deal with restriction level
|
||||
. N SAB S SAB=$P(LINE,"|",12)
|
||||
. I 'RESTRICTED,SABS(SAB) QUIT ; If not include restricted, and SABS(SAB) is not zero, quit
|
||||
|
|
@ -62,13 +69,16 @@ CONSO(PATH,SABS,RESTRICTED) ; Open and read concepts file: RXNCONSO.RRF
|
|||
. S ^C0CRXN(176.001,C0CCOUNT,0)=$TR(LINE,"|^","^|")
|
||||
EX D CLOSE^%ZISH("FILE")
|
||||
N DIK S DIK="^C0CRXN(176.001," D IXALL^DIK
|
||||
W "Suppressed: ",C0CSUPP,!
|
||||
QUIT
|
||||
;
|
||||
;
|
||||
SAT(PATH,SABS,RESTRICTED) ; Open and read Concept and Atom attributes: RXNSAT.RRF
|
||||
SAT(PATH,RESTRICTED) ; Open and read Concept and Atom attributes: RXNSAT.RRF
|
||||
; PATH ByVal, path of RxNorm files
|
||||
; SABS ByRef, arrays of SABS(SAB)=restriction level
|
||||
; RESTRICTED ByVal, include restricted sources. 1 for yes, 0 for no
|
||||
N $ET S $ET="D ^%ZTER HALT"
|
||||
S U="^"
|
||||
I PATH="" QUIT
|
||||
N FILENAME S FILENAME="RXNSAT.RRF"
|
||||
D DELFILED(176.002) ; delete data
|
||||
|
|
@ -76,12 +86,18 @@ SAT(PATH,SABS,RESTRICTED) ; Open and read Concept and Atom attributes: RXNSAT.RR
|
|||
N POP
|
||||
D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
|
||||
IF POP W "Error reading file..., Please check...",! G EX2
|
||||
N SABS D LOADSABS(.SABS)
|
||||
N C0CSUPP S C0CSUPP=0
|
||||
N C0CCOUNT F C0CCOUNT=1:1 Q:$$STATUS^%ZISH D
|
||||
. U IO
|
||||
. N LINE R LINE:0
|
||||
. IF $$STATUS^%ZISH QUIT
|
||||
. I '(C0CCOUNT#1000) U $P W C0CCOUNT," of ",LINES," read ",! U IO ; update every 1000
|
||||
. ;
|
||||
. ; If suppressed, quit
|
||||
. N SUPP S SUPP=$P(LINE,"|",12)
|
||||
. I SUPP="O"!(SUPP="Y")!(SUPP="E") S C0CSUPP=C0CSUPP+1 QUIT
|
||||
. ;
|
||||
. ; We switch around the fields .01 and .09 because the .01 isn't always present; where as .09 is required
|
||||
. N RXCUI1,ATN9
|
||||
. S RXCUI1=$P(LINE,"|",1)
|
||||
|
|
@ -97,10 +113,11 @@ SAT(PATH,SABS,RESTRICTED) ; Open and read Concept and Atom attributes: RXNSAT.RR
|
|||
. S ^C0CRXN(176.002,C0CCOUNT,0)=$TR(LINE,"|^","^|")
|
||||
EX2 D CLOSE^%ZISH("FILE")
|
||||
N DIK S DIK="^C0CRXN(176.002," D IXALL^DIK
|
||||
W "Suppressed: ",C0CSUPP,!
|
||||
QUIT
|
||||
;
|
||||
;
|
||||
SAB(PATH,SABS) ; Open the read RxNorm Sources file: RXNSAB.RRF
|
||||
SAB(PATH) ; Open the read RxNorm Sources file: RXNSAB.RRF
|
||||
I PATH="" QUIT
|
||||
N FILENAME S FILENAME="RXNSAB.RRF"
|
||||
D DELFILED(176.003) ; delete data
|
||||
|
|
@ -120,9 +137,13 @@ SAB(PATH,SABS) ; Open the read RxNorm Sources file: RXNSAB.RRF
|
|||
. S ^C0CRXN(176.003,I,0)=$TR(LINE,"^|","|^")
|
||||
EX3 D CLOSE^%ZISH("FILE")
|
||||
N DIK S DIK="^C0CRXN(176.003," D IXALL^DIK
|
||||
QUIT
|
||||
;
|
||||
LOADSABS(SABS) ;
|
||||
N C0CI F C0CI=0:0 S C0CI=$O(^C0CRXN(176.003,C0CI)) Q:'C0CI D
|
||||
. S SABS($$GET1^DIQ(176.003,C0CI,.01))=$$GET1^DIQ(176.003,C0CI,"SRL")
|
||||
QUIT
|
||||
;
|
||||
STY(PATH) ; Open and read RxNorm Semantic types file: RXNSTY.RRF
|
||||
I PATH="" QUIT
|
||||
N FILENAME S FILENAME="RXNSTY.RRF"
|
||||
|
|
@ -149,9 +170,15 @@ REL(PATH) ; Open and read RxNorm Relationships file: RXNREL.RRF
|
|||
N POP
|
||||
D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
|
||||
IF POP W "Error reading file..., Please check...",! G EX5
|
||||
N C0CSUPP S C0CSUPP=0
|
||||
N I F I=1:1 Q:$$STATUS^%ZISH D
|
||||
. U IO
|
||||
. N LINE R LINE:0
|
||||
. ;
|
||||
. ; If suppressed, quit
|
||||
. N SUPP S SUPP=$P(LINE,"|",15)
|
||||
. I SUPP="O"!(SUPP="Y")!(SUPP="E") S C0CSUPP=C0CSUPP+1 QUIT
|
||||
. ;
|
||||
. IF $$STATUS^%ZISH QUIT
|
||||
. I '(I#1000) U $P W I," of ",LINES," read ",! U IO ; update every 1000
|
||||
. ; swap RXCUI1 location with SAB b/c SAB is required so can be .01 field
|
||||
|
|
@ -162,6 +189,7 @@ REL(PATH) ; Open and read RxNorm Relationships file: RXNREL.RRF
|
|||
. S ^C0CRXN(176.005,I,0)=$TR(LINE,"^|","|^")
|
||||
EX5 D CLOSE^%ZISH("FILE")
|
||||
N DIK S DIK="^C0CRXN(176.005," D IXALL^DIK
|
||||
W "Suppressed: ",C0CSUPP,!
|
||||
QUIT
|
||||
DOC(PATH) ; Open the read RxNorm Abbreviation Documentation file: RXNDOC.RRF
|
||||
I PATH="" QUIT
|
||||
|
|
|
|||
Loading…
Reference in New Issue