2.5 version of RxNorm package
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@ -0,0 +1,11 @@
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v 2.5
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This version is a cumulative version that provides the following changes:
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- Any row in the tables with a SUPPRESS value of O, Y or E is not imported.
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This data has been deemed obsolete or unreliable and should not be used.
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- Data loader loads the data in 2 threads.
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- Unit Tests moved to the OSEHRA Unit Testing Framework
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- New APIs for translating VUIDs to RxNorm values:
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-- $$VUI2RXN^C0CRXNLK(VUID,TTY) -> VUID to RxNorm
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-- $$LVUID^C0CRXNLK(RXN) -> RxNorm to VUID
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@ -1,132 +1,132 @@
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C0CRXNAD ; VEN/SMH - Add a drug to VISTA from RxNorm;2013-04-19 5:39 PM
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;;2.3;RXNORM FOR VISTA;;Jul 22, 2014;Build 10
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; (C) 2013 Sam Habiel
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; Proprietary Code. Don't use if license terms aren't supplied.
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;
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ADDDRUG(RXN,NDC,BARCODE) ; Public Proc; Add Drug to Drug File
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; Input: RXN - RxNorm Semantic Clinical Drug CUI by Value. Required.
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; Input: NDC - Drug NDC by Value. Optional. Pass in 11 digit format without dashes.
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; Input: BARCODE - Wand Barcode. Optional. Pass exactly as wand reads minus control characters.
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; Output: Internal Entry Number
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;
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; Prelim Checks
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I '$G(RXN) S $EC=",U1," ; Required
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I $L($G(NDC)),$L(NDC)'=11 S $EC=",U1,"
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;
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N PSSZ S PSSZ=1 ; Needed for the drug file to let me in!
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;
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; If RXN refers to a brand drug, get the generic instead.
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I $$ISBRAND^C0CRXNLK(RXN) S RXN=$$BR2GEN^C0CRXNLK(RXN)
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W !,"(debug) RxNorm is "_RXN,!
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;
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; Get first VUID for this RxNorm drug
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N VUID S VUID=+$$RXN2VUI^C0CRXNLK(RXN)
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Q:'VUID
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W "(debug) VUID for RxNorm CUI "_RXN_" is "_VUID,!
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;
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; IEN in 50.68
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N C0XVUID ; For Searching Compound Index
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S C0XVUID(1)=VUID
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S C0XVUID(2)=1
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N F5068IEN S F5068IEN=$$FIND1^DIC(50.68,"","XQ",.C0XVUID,"AMASTERVUID")
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Q:'F5068IEN
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W "F 50.68 IEN (debug): "_F5068IEN,!
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;
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; FDA Array
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N C0XFDA
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;
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; Name, shortened
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S C0XFDA(50,"+1,",.01)=$E($$GET1^DIQ(50.68,F5068IEN,.01),1,40)
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;
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; File BarCode as a Synonym for BCMA
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I $L($G(BARCODE)) D
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. S C0XFDA(50.1,"+2,+1,",.01)=BARCODE
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. S C0XFDA(50.1,"+2,+1,",1)="Q"
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;
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; Brand Names
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N BNS S BNS=$$RXN2BNS^C0CRXNLK(RXN) ; Brands
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I $L(BNS) N I F I=1:1:$L(BNS,U) D
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. N IENS S IENS=I+2
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. S C0XFDA(50.1,"+"_IENS_",+1,",.01)=$$UP^XLFSTR($E($P(BNS,U,I),1,40))
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. S C0XFDA(50.1,"+"_IENS_",+1,",1)="T"
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;
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; NDC (string)
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I $G(NDC) S C0XFDA(50,"+1,",31)=$E(NDC,1,5)_"-"_$E(NDC,6,9)_"-"_$E(NDC,10,11)
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;
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; Dispense Unit (string)
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S C0XFDA(50,"+1,",14.5)=$$GET1^DIQ(50.68,F5068IEN,"VA DISPENSE UNIT")
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;
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; National Drug File Entry (pointer to 50.6)
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S C0XFDA(50,"+1,",20)="`"_$$GET1^DIQ(50.68,F5068IEN,"VA GENERIC NAME","I")
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;
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; VA Product Name (string)
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S C0XFDA(50,"+1,",21)=$E($$GET1^DIQ(50.68,F5068IEN,.01),1,70)
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;
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; PSNDF VA PRODUCT NAME ENTRY (pointer to 50.68)
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S C0XFDA(50,"+1,",22)="`"_F5068IEN
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;
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; DEA, SPECIAL HDLG (string)
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D ; From ^PSNMRG
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. N CS S CS=$$GET1^DIQ(50.68,F5068IEN,"CS FEDERAL SCHEDULE","I")
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. S CS=$S(CS?1(1"2n",1"3n"):+CS_"C",+CS=2!(+CS=3)&(CS'["C"):+CS_"A",1:CS)
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. S C0XFDA(50,"+1,",3)=CS
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;
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; NATIONAL DRUG CLASS (pointer to 50.605) (triggers VA Classification field)
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S C0XFDA(50,"+1,",25)="`"_$$GET1^DIQ(50.68,F5068IEN,"PRIMARY VA DRUG CLASS","I")
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;
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; Right Now, I don't file the following which ^PSNMRG does (cuz I don't need them)
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; - Package Size (derived from NDC/UPN file)
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; - Package Type (ditto)
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; - CMOP ID (from $$PROD2^PSNAPIS)
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; - National Formulary Indicator (from 50.68)
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;
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; Next Step is to kill Old OI if Dosage Form doesn't match
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; Won't do that here as it's assumed any drugs that's added is new.
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; This happens at ^PSNPSS
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;
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; Now add drug to drug file, as we need the IEN for the dosages call.
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N C0XERR,C0XIEN
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D UPDATE^DIE("E","C0XFDA","C0XIEN","C0XERR")
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S:$D(C0XERR) $EC=",U1,"
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;
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; Next Step: Kill off old doses and add new ones.
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D EN2^PSSUTIL(C0XIEN(1))
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;
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; Mark uses for the Drug; use the undocumented Silent call in PSSGIU
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N PSIUDA,PSIUX ; Expected Input variables
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S PSIUDA=C0XIEN(1),PSIUX="O^Outpatient Pharmacy" D ENS^PSSGIU
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S PSIUDA=C0XIEN(1),PSIUX="U^Unit Dose" D ENS^PSSGIU
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S PSIUDA=C0XIEN(1),PSIUX="X^Non-VA Med" D ENS^PSSGIU
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;
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; Get VA Generic text and VA Product pointer for Orderable Item creation plus dosage form information
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N VAGENP S VAGENP=$P(^PSDRUG(C0XIEN(1),"ND"),U) ; VA Generic Pointer
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N VAGEN S VAGEN=$$VAGN^PSNAPIS(VAGENP) ; VA Generic Full name
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N VAPRODP S VAPRODP=$P(^PSDRUG(C0XIEN(1),"ND"),U,3) ; VA Product Pointer
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N DOSAGE S DOSAGE=$$PSJDF^PSNAPIS(0,VAPRODP) ; IEN of dose form in 50.606 ^ Text
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N DOSEPTR S DOSEPTR=$P(DOSAGE,U) ; ditto
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N DOSEFORM S DOSEFORM=$P(DOSAGE,U,2) ;ditto
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;
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; Get the (possibly new) Orderable Item Text
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N VAG40 S VAG40=$E(VAGEN,1,40) ; Max length of .01 field
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;
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; See if there is an existing orderable item already. If so, populate the Pharmacy Orderable item on drug file.
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N OI S OI=$O(^PS(50.7,"ADF",VAG40,DOSEPTR,""))
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;
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; Otherwise, add a new one. (See MCHAN+12^PSSPOIMN)
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I 'OI D
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. N C0XFDA,C0XERR
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. S C0XFDA(50.7,"+1,",.01)=VAG40
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. S C0XFDA(50.7,"+1,",.02)=DOSEPTR
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. D UPDATE^DIE("",$NA(C0XFDA),$NA(OI),$NA(C0XERR))
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. I $D(C0XERR) S $EC=",U1,"
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. S OI=OI(1) ; For ease of use...
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. ; Next two statements: See FIN^PSSPOIM1 and MF^PSSDEE.
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. D EN^PSSPOIDT(OI) ; Update Indexes; activations, etc.
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. D EN2^PSSHL1(OI,"MUP") ; Send HL7 message to CPRS
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;
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; Finally, add the orderable Item to the drug file.
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N C0XFDA,C0XERR S C0XFDA(50,C0XIEN(1)_",",2.1)=OI ; Orderable Item
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D FILE^DIE("",$NA(C0XFDA),$NA(C0XERR))
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S:$D(C0XERR) $EC=",U1,"
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;
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EX QUIT C0XIEN(1)
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C0CRXNAD ; VEN/SMH - Add a drug to VISTA from RxNorm;2013-04-19 5:39 PM
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;;2.5;RXNORM FOR VISTA;;Apr 27, 2016;Build 17
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; (C) 2013 Sam Habiel
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; Proprietary Code. Don't use if license terms aren't supplied.
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;
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ADDDRUG(RXN,NDC,BARCODE) ; Public Proc; Add Drug to Drug File
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; Input: RXN - RxNorm Semantic Clinical Drug CUI by Value. Required.
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; Input: NDC - Drug NDC by Value. Optional. Pass in 11 digit format without dashes.
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; Input: BARCODE - Wand Barcode. Optional. Pass exactly as wand reads minus control characters.
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; Output: Internal Entry Number
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;
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; Prelim Checks
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I '$G(RXN) S $EC=",U1," ; Required
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I $L($G(NDC)),$L(NDC)'=11 S $EC=",U1,"
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;
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N PSSZ S PSSZ=1 ; Needed for the drug file to let me in!
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;
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; If RXN refers to a brand drug, get the generic instead.
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I $$ISBRAND^C0CRXNLK(RXN) S RXN=$$BR2GEN^C0CRXNLK(RXN)
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W !,"(debug) RxNorm is "_RXN,!
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;
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; Get first VUID for this RxNorm drug
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N VUID S VUID=+$$RXN2VUI^C0CRXNLK(RXN)
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Q:'VUID
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W "(debug) VUID for RxNorm CUI "_RXN_" is "_VUID,!
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;
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; IEN in 50.68
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N C0XVUID ; For Searching Compound Index
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S C0XVUID(1)=VUID
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S C0XVUID(2)=1
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N F5068IEN S F5068IEN=$$FIND1^DIC(50.68,"","XQ",.C0XVUID,"AMASTERVUID")
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Q:'F5068IEN
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W "F 50.68 IEN (debug): "_F5068IEN,!
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;
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; FDA Array
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N C0XFDA
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;
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; Name, shortened
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S C0XFDA(50,"+1,",.01)=$E($$GET1^DIQ(50.68,F5068IEN,.01),1,40)
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;
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; File BarCode as a Synonym for BCMA
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I $L($G(BARCODE)) D
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. S C0XFDA(50.1,"+2,+1,",.01)=BARCODE
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. S C0XFDA(50.1,"+2,+1,",1)="Q"
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;
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; Brand Names
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N BNS S BNS=$$RXN2BNS^C0CRXNLK(RXN) ; Brands
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I $L(BNS) N I F I=1:1:$L(BNS,U) D
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. N IENS S IENS=I+2
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. S C0XFDA(50.1,"+"_IENS_",+1,",.01)=$$UP^XLFSTR($E($P(BNS,U,I),1,40))
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. S C0XFDA(50.1,"+"_IENS_",+1,",1)="T"
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;
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; NDC (string)
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I $G(NDC) S C0XFDA(50,"+1,",31)=$E(NDC,1,5)_"-"_$E(NDC,6,9)_"-"_$E(NDC,10,11)
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;
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; Dispense Unit (string)
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S C0XFDA(50,"+1,",14.5)=$$GET1^DIQ(50.68,F5068IEN,"VA DISPENSE UNIT")
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;
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; National Drug File Entry (pointer to 50.6)
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S C0XFDA(50,"+1,",20)="`"_$$GET1^DIQ(50.68,F5068IEN,"VA GENERIC NAME","I")
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;
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; VA Product Name (string)
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S C0XFDA(50,"+1,",21)=$E($$GET1^DIQ(50.68,F5068IEN,.01),1,70)
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;
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; PSNDF VA PRODUCT NAME ENTRY (pointer to 50.68)
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S C0XFDA(50,"+1,",22)="`"_F5068IEN
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;
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; DEA, SPECIAL HDLG (string)
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D ; From ^PSNMRG
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. N CS S CS=$$GET1^DIQ(50.68,F5068IEN,"CS FEDERAL SCHEDULE","I")
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. S CS=$S(CS?1(1"2n",1"3n"):+CS_"C",+CS=2!(+CS=3)&(CS'["C"):+CS_"A",1:CS)
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. S C0XFDA(50,"+1,",3)=CS
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;
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; NATIONAL DRUG CLASS (pointer to 50.605) (triggers VA Classification field)
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S C0XFDA(50,"+1,",25)="`"_$$GET1^DIQ(50.68,F5068IEN,"PRIMARY VA DRUG CLASS","I")
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;
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; Right Now, I don't file the following which ^PSNMRG does (cuz I don't need them)
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; - Package Size (derived from NDC/UPN file)
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; - Package Type (ditto)
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; - CMOP ID (from $$PROD2^PSNAPIS)
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; - National Formulary Indicator (from 50.68)
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;
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; Next Step is to kill Old OI if Dosage Form doesn't match
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; Won't do that here as it's assumed any drugs that's added is new.
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; This happens at ^PSNPSS
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;
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; Now add drug to drug file, as we need the IEN for the dosages call.
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N C0XERR,C0XIEN
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D UPDATE^DIE("E","C0XFDA","C0XIEN","C0XERR")
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S:$D(C0XERR) $EC=",U1,"
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;
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; Next Step: Kill off old doses and add new ones.
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D EN2^PSSUTIL(C0XIEN(1))
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;
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; Mark uses for the Drug; use the undocumented Silent call in PSSGIU
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N PSIUDA,PSIUX ; Expected Input variables
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S PSIUDA=C0XIEN(1),PSIUX="O^Outpatient Pharmacy" D ENS^PSSGIU
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S PSIUDA=C0XIEN(1),PSIUX="U^Unit Dose" D ENS^PSSGIU
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S PSIUDA=C0XIEN(1),PSIUX="X^Non-VA Med" D ENS^PSSGIU
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;
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; Get VA Generic text and VA Product pointer for Orderable Item creation plus dosage form information
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N VAGENP S VAGENP=$P(^PSDRUG(C0XIEN(1),"ND"),U) ; VA Generic Pointer
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N VAGEN S VAGEN=$$VAGN^PSNAPIS(VAGENP) ; VA Generic Full name
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N VAPRODP S VAPRODP=$P(^PSDRUG(C0XIEN(1),"ND"),U,3) ; VA Product Pointer
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N DOSAGE S DOSAGE=$$PSJDF^PSNAPIS(0,VAPRODP) ; IEN of dose form in 50.606 ^ Text
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N DOSEPTR S DOSEPTR=$P(DOSAGE,U) ; ditto
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N DOSEFORM S DOSEFORM=$P(DOSAGE,U,2) ;ditto
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;
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; Get the (possibly new) Orderable Item Text
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N VAG40 S VAG40=$E(VAGEN,1,40) ; Max length of .01 field
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;
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; See if there is an existing orderable item already. If so, populate the Pharmacy Orderable item on drug file.
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N OI S OI=$O(^PS(50.7,"ADF",VAG40,DOSEPTR,""))
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;
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; Otherwise, add a new one. (See MCHAN+12^PSSPOIMN)
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I 'OI D
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. N C0XFDA,C0XERR
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. S C0XFDA(50.7,"+1,",.01)=VAG40
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. S C0XFDA(50.7,"+1,",.02)=DOSEPTR
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. D UPDATE^DIE("",$NA(C0XFDA),$NA(OI),$NA(C0XERR))
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. I $D(C0XERR) S $EC=",U1,"
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. S OI=OI(1) ; For ease of use...
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. ; Next two statements: See FIN^PSSPOIM1 and MF^PSSDEE.
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. D EN^PSSPOIDT(OI) ; Update Indexes; activations, etc.
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. D EN2^PSSHL1(OI,"MUP") ; Send HL7 message to CPRS
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;
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; Finally, add the orderable Item to the drug file.
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N C0XFDA,C0XERR S C0XFDA(50,C0XIEN(1)_",",2.1)=OI ; Orderable Item
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D FILE^DIE("",$NA(C0XFDA),$NA(C0XERR))
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S:$D(C0XERR) $EC=",U1,"
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;
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EX QUIT C0XIEN(1)
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@ -1,12 +1,12 @@
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C0CRXNLK ; VEN/SMH - RxNorm Lookup Utilities ;2014-07-22 2:27 PM
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;;2.3;RXNORM FOR VISTA;;Jul 22, 2014;Build 16
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;(c) Sam Habiel 2013
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;;2.5;RXNORM FOR VISTA;;Apr 27, 2016;Build 16
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;(c) Sam Habiel 2016
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; See accompanying license. Don't use otherwise.
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;
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S IO=$P
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N DIQUIET S DIQUIET=1
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D DT^DICRW
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D EN^XTMUNIT($T(+0),1)
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D EN^%ut($T(+0),2)
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QUIT
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;
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EXIST(RXN) ; $$ Public - Does this RxNorm CUI exist?
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@ -21,16 +21,15 @@ GCN2RXN(GCN) ; $$ Public - Get RxNorm CUI using GCN
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N IEN S IEN=$O(^C0CRXN(176.001,"STC","NDDF","CDC",GCN,"")) ; Get Entry
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Q ^(IEN)
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;
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GCN2RXNT ; @TEST - Test Get RxNorm CUI using GCN
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GCN2RXNT ; @TEST Test Get RxNorm CUI using GCN
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Q:'$D(^C0CRXN(176.001,"STC","NDDF"))
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N L F L=1:1 N LN S LN=$T(GCN2RXND+L) Q:LN["<<END>>" Q:LN="" D
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. N GCN S GCN=$P(LN,";",3)
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. N RXN S RXN=$P(LN,";",4)
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. D CHKEQ^XTMUNIT($$GCN2RXN(GCN),RXN,"Translation from GCN to RXCUI failed")
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. D CHKEQ^%ut($$GCN2RXN(GCN),RXN,"Translation from GCN to RXCUI failed")
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QUIT
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;
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GCN2RXND ; @DATA - Data for Tests ;;GCN;EXPECTED RXNCUI
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;;16033;991632
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;;8208;310429
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;;1275;628953
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;;18;197604
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@ -48,20 +47,20 @@ RXN2GCN(RXNCUI) ; $$ Public - Get GCN(s) given an RxNorm Number
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S GCNS=$E(GCNS,1,$L(GCNS)-1) ; remove trailing ^
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Q GCNS
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;
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RXN2GCNT ; @TEST - Test Get GCN from RXNCUI
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RXN2GCNT ; @TEST Test Get GCN from RXNCUI
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Q:'$D(^C0CRXN(176.001,"STX","NDDF"))
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N L F L=1:1 N LN S LN=$T(RXN2GCND+L) Q:LN["<<END>>" Q:LN="" D
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. N RXN S RXN=$P(LN,";",3)
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. N GCN S GCN=$P(LN,";",4)
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. D CHKEQ^XTMUNIT($$RXN2GCN(RXN),GCN,"Translation from RXCUI to GCN failed")
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. D CHKEQ^%ut($$RXN2GCN(RXN),GCN,"Translation from RXCUI to GCN failed")
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QUIT
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;
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;
|
||||
RXN2GCND ; @DATA - Data for Tests ;;RXNORM CUI;Expected GCN; Human Readable Drug name for dear reader
|
||||
;;998689;5145;Acetabulol 200mg tab
|
||||
;;745679;5037;Albuterol Inhaler
|
||||
;;745679;28090;Albuterol Inhaler
|
||||
;;197320;2536;Allopurinol 300mg tab
|
||||
;;993691;3948^46236;Bupropion 75mg tab
|
||||
;;993691;46236;Bupropion 75mg tab
|
||||
;;197591;3768;Diazepam 5mg tab
|
||||
;;<<END>>
|
||||
;
|
||||
|
|
@ -78,19 +77,18 @@ RXN2VUI(RXNCUI) ; $$ Public - Get VUID(s) for given RXNCUI for Clinical Drug
|
|||
; I $O(^C0CRXN(176.005,"RXCUIREL",RXN,"has_quantified_form","")) N QF S QF=$O(^("")) Q $O(^C0CRXN(176.001,"RXN2VUID",QF,""))
|
||||
Q C0PVUID
|
||||
;
|
||||
RXN2VUIT ; @TEST - Get VUIDs given RxNorm values
|
||||
RXN2VUIT ; @TEST Get VUIDs given RxNorm values
|
||||
N L F L=1:1 N LN S LN=$T(RXN2VUID+L) Q:LN["<<END>>" Q:LN="" D
|
||||
. N RXN S RXN=$P(LN,";",3)
|
||||
. N VUIDS S VUIDS=$P(LN,";",4)
|
||||
. D CHKEQ^XTMUNIT($P($$RXN2VUI(RXN),U),$P(VUIDS,U),"Translation from RXNCUI to VUID failed")
|
||||
. D CHKEQ^%ut($P($$RXN2VUI(RXN),U),$P(VUIDS,U),"Translation from RXNCUI to VUID failed")
|
||||
QUIT
|
||||
;
|
||||
RXN2VUID ; @DATA - Data items for previous test
|
||||
;;991632;4006455
|
||||
;;310429;4002369^4013941
|
||||
;;628953;4000874^4000856^4013966^4015798^4015799
|
||||
;;628953;4000856^4013966^4015798^4015799
|
||||
;;197604;4003335^4015937
|
||||
;;884173;4002469^4013919
|
||||
;;884173;4002469^4013919^4032795
|
||||
;;<<END>>
|
||||
;
|
||||
;
|
||||
|
|
@ -104,11 +102,11 @@ VUI2VAP(VUID) ; $$ Public - Get VA Product IEN(s) from VUID
|
|||
S O=$E(O,1,$L(O)-1) ; remove trailing ^
|
||||
Q O
|
||||
;
|
||||
VUI2VAPT ; @TEST - Get VA Product IEN from VUID
|
||||
VUI2VAPT ; @TEST Get VA Product IEN from VUID
|
||||
N L F L=1:1 N LN S LN=$T(VUI2VAPD+L) Q:LN["<<END>>" Q:LN="" D
|
||||
. N VUID S VUID=$P(LN,";",3)
|
||||
. N VAP S VAP=$P(LN,";",4)
|
||||
. D CHKEQ^XTMUNIT($$VUI2VAP(VUID),VAP,"Translation from VUID to VA PRODUCT failed")
|
||||
. D CHKEQ^%ut($$VUI2VAP(VUID),VAP,"Translation from VUID to VA PRODUCT failed")
|
||||
QUIT
|
||||
;
|
||||
VUI2VAPD ; @DATA - Data for above test
|
||||
|
|
@ -165,9 +163,9 @@ FDI2RXN(BASE) ; $$ Public - Get RxNorm CUI for FDB Ingredient/Base
|
|||
S BASE=$$RJ^XLFSTR(BASE,6,0) ; pad to six digits by zeros (123 becomes 000123)
|
||||
N IEN S IEN=$O(^C0CRXN(176.001,"STC","NDDF","IN",BASE,"")) Q ^(IEN)
|
||||
;
|
||||
FDI2RXNT ; @TEST - Test Get RxNorm CUI for FDB Ingredient/Base
|
||||
FDI2RXNT ; @TEST Test Get RxNorm CUI for FDB Ingredient/Base
|
||||
Q:'$D(^C0CRXN(176.001,"STC","NDDF"))
|
||||
D CHKEQ^XTMUNIT($$FDI2RXN(14739),1362160,"$$FDI2RXN failed")
|
||||
D CHKEQ^%ut($$FDI2RXN(14739),1362160,"$$FDI2RXN failed")
|
||||
QUIT
|
||||
;
|
||||
;
|
||||
|
|
@ -176,10 +174,12 @@ RXN2VIN(RXNCUI) ; $$ Public - Get VUID Ingredient for RxNorm CUI
|
|||
; ^C0CRXN(176.001,"STX","VANDF","IN",1366467,1008555)=4031768
|
||||
; Input: RXNCUI By Value
|
||||
; Output: VUID
|
||||
N IEN S IEN=$O(^C0CRXN(176.001,"STX","VANDF","IN",RXNCUI,"")) Q ^(IEN)
|
||||
N IEN S IEN=$O(^C0CRXN(176.001,"STX","VANDF","IN",RXNCUI,""))
|
||||
I IEN Q ^(IEN)
|
||||
E Q ""
|
||||
;
|
||||
RXN2VINT ; @TEST - Test Get VUID Ingredient for RxNorm CUI
|
||||
D CHKEQ^XTMUNIT($$RXN2VIN(1366467),4031768,"$$RXN2VIN failed")
|
||||
RXN2VINT ; @TEST Test Get VUID Ingredient for RxNorm CUI
|
||||
D CHKEQ^%ut($$RXN2VIN(1366467),4031768,"$$RXN2VIN failed")
|
||||
QUIT
|
||||
;
|
||||
;
|
||||
|
|
@ -191,8 +191,8 @@ VIN2VAG(VUID) ; $$ Public - Get VA Generic for VUID Ingredient
|
|||
N C0P01 S C0P01=$$GET1^DIQ(50.6,C0PIEN,.01)
|
||||
Q C0PIEN_"^"_C0P01
|
||||
;
|
||||
VIN2VAGT ; @TEST - Test Get VA Generic for VUID Ingredient
|
||||
D CHKEQ^XTMUNIT(+$$VIN2VAG(4023636),2832,"$$VIN2VAG failed")
|
||||
VIN2VAGT ; @TEST Test Get VA Generic for VUID Ingredient
|
||||
D CHKEQ^%ut(+$$VIN2VAG(4023636),2832,"$$VIN2VAG failed")
|
||||
QUIT
|
||||
;
|
||||
;
|
||||
|
|
@ -217,25 +217,31 @@ FDI2DIN(BASE) ; $$ Public - Get Drug Ingredient for FDB Ingredient/Base
|
|||
; Output: IEN^Drug Ingredient Name (i.e. .01 field value)
|
||||
Q $$VIN2DIN($$RXN2VIN($$FDI2RXN(BASE)))
|
||||
;
|
||||
VUI2RXN(VUID) ; $$ Public - Get RXNCUI for VUID (any VUID type)
|
||||
; Input: VUID By Value
|
||||
; Output: RXNCUIs delimited by ^
|
||||
; Get all entries whose code is the VUID and are in the VA NDF which are clinical drugs
|
||||
D FIND^DIC(176.001,,"@;.01","PQX",VUID,,"CODE","I $P(^(0),U,12,13)=""VANDF^CD""")
|
||||
; Deserialise it into a single string
|
||||
; ^TMP("DILIST",4844,0)="1^*^0^"
|
||||
; ^TMP("DILIST",4844,0,"MAP")="IEN^.01"
|
||||
; ^TMP("DILIST",4844,1,0)="1006351^1364462"
|
||||
N RXNS S RXNS=""
|
||||
N I F I=0:0 S I=$O(^TMP("DILIST",$J,I)) Q:'I S RXNS=RXNS_$P(^(I,0),U,2)_U
|
||||
S RXNS=$E(RXNS,1,$L(RXNS)-1)
|
||||
QUIT RXNS
|
||||
VUI2RXN(VUID,TTY) ; $$ Public Stephanie's Unified VUID searcher. Get RXNCUI given VUID
|
||||
;GIVEN A VUID IN ONE OF SEVERAL FILES RETURN THE ASSOCIATED RXNORM CODE IN 176.001
|
||||
; TTY="IN", "CD", or "PT"
|
||||
; IN = DRUG INGRIDENT FILE & VA GENERIC file
|
||||
; CD = VA PRODUCT FILE
|
||||
; PT = VA DRUG CLASS
|
||||
;
|
||||
; SAB="VANDF"
|
||||
; CODE=VUID
|
||||
;
|
||||
I $O(^C0CRXN(176.001,"STC","VANDF",TTY,VUID,"")) Q ^($O(^("")))
|
||||
Q ""
|
||||
;
|
||||
VUI2RXNT ; @TEST VUID to RxNorm CUI tests
|
||||
D CHKEQ^%ut($$VUI2RXN(4010151,"CD"),314231)
|
||||
D CHKEQ^%ut($$VUI2RXN(4020940,"IN"),16681)
|
||||
D CHKEQ^%ut($$VUI2RXN(4021568,"PT"),883)
|
||||
D CHKEQ^%ut($$VUI2RXN(1234234,"CD"),"")
|
||||
QUIT
|
||||
;
|
||||
VUI2GCN(VUID) ; $$ Public - Get GCNs for a given VUID (any VUID type)
|
||||
; Input: VUID by Value
|
||||
; Output: GCNs delimited by ^
|
||||
; TODO: Unit Test
|
||||
N RXNS S RXNS=$$VUI2RXN(VUID)
|
||||
N RXNS S RXNS=$$VUI2RXN(VUID,"AB")
|
||||
Q:RXNS="" "" ; VUID not a drug or ingredient (can be food)
|
||||
N GCNS S GCNS=""
|
||||
N I F I=1:1:$L(RXNS,U) S GCNS=GCNS_$$RXN2GCN($P(RXNS,U,I))_U
|
||||
|
|
@ -250,13 +256,16 @@ MED2RXN(DA) ; $$ Public - Get RxNorm CUI for Drug
|
|||
Q:'VAP "" ; quit if empty
|
||||
N VUID S VUID=+^PSNDF(50.68,VAP,"VUID") ; Get VUID
|
||||
I 'VUID S $EC=",U1," ; Must exist
|
||||
Q $$VUI2RXN(VUID)
|
||||
Q $$VUI2RXN(VUID,"AB")
|
||||
;
|
||||
MED2SCDN(DA) ; $$ Public - Medication to Semantic Clinical Drug Name
|
||||
; Input: DA - Medication IEN
|
||||
; Output: The Canonical Semantic Clinical Drug name
|
||||
N RXNCUI S RXNCUI=$$MED2RXN(DA)
|
||||
Q:'RXNCUI ""
|
||||
Q $$SCDNAME(RXNCUI)
|
||||
;
|
||||
SCDNAME(RXNCUI) ; $$ Public - Semantic Clinical Drug Name for RxNorm CUI
|
||||
N IEN S IEN=$O(^C0CRXN(176.001,"STC","RXNORM","SCD",RXNCUI,"")) ; Let's try generic drug
|
||||
I 'IEN S IEN=$O(^C0CRXN(176.001,"STC","RXNORM","SBD",RXNCUI,"")) ; Let's try non-bioequivalent Brands then
|
||||
I 'IEN S IEN=$O(^C0CRXN(176.001,"STC","RXNORM","GPCK",RXNCUI,"")) ; Let's try a Generic combination package
|
||||
|
|
@ -264,6 +273,15 @@ MED2SCDN(DA) ; $$ Public - Medication to Semantic Clinical Drug Name
|
|||
Q:'IEN "" ; Apparently not every VUID has a corresponding RXNCUI SCD.
|
||||
Q $P(^C0CRXN(176.001,IEN,0),U,15)
|
||||
;
|
||||
ANYNAME(RXNCUI) ; $$ Public - Get the RxNorm name, no matter what it is
|
||||
N RESULT S RESULT=""
|
||||
N TTY S TTY=""
|
||||
F S TTY=$O(^C0CRXN(176.001,"STC","RXNORM",TTY)) Q:TTY="" D Q:RESULT]""
|
||||
. N IEN S IEN=$O(^C0CRXN(176.001,"STC","RXNORM",TTY,RXNCUI,""))
|
||||
. Q:'IEN
|
||||
. S RESULT=$P(^C0CRXN(176.001,IEN,0),U,15)
|
||||
QUIT RESULT
|
||||
;
|
||||
RXN2NDI(RXNCUI) ; $$ Public - Get NDDF Ingredient for RXNCUI
|
||||
; Input: RXNCUI By Value
|
||||
; Output: NDDF Base code
|
||||
|
|
@ -275,7 +293,7 @@ VIN2NDI(VUID) ; $$ Public - Get NDDF Ingredient for VUID
|
|||
; Input: VUID By Value
|
||||
; Output: NDDF Base code
|
||||
; TODO:Not tested...
|
||||
Q $$RXN2NDI($$VUI2RXN(VUID))
|
||||
Q $$RXN2NDI($$VUI2RXN(VUID,"IN"))
|
||||
;
|
||||
; ---
|
||||
;
|
||||
|
|
@ -286,9 +304,9 @@ NDC2RXN(NDC) ; $$ Public - Get RxCUI given the NDC
|
|||
S NDC=$TR(NDC,"-")
|
||||
N IEN S IEN=$O(^C0CRXN(176.002,"ASAA","RXNORM","NDC",NDC,"")) Q ^(IEN)
|
||||
;
|
||||
NDC2RXNT ; @TEST - Test Get RxCUI given the NDC & Get RxCUI given the 50.67 NDC
|
||||
D CHKEQ^XTMUNIT($$NDC2RXN("30142-0917-71"),198439,"$$NDC2RXN failed")
|
||||
D CHKEQ^XTMUNIT($$NDC2RXN2("000031868518","VANDF"),996520,"$$NDC2RXN2 failed")
|
||||
NDC2RXNT ; @TEST Test Get RxCUI given the NDC & Get RxCUI given the 50.67 NDC
|
||||
D CHKEQ^%ut($$NDC2RXN("30142-0917-71"),198439,"$$NDC2RXN failed")
|
||||
D CHKEQ^%ut($$NDC2RXN2("000031868518","VANDF"),996520,"$$NDC2RXN2 failed")
|
||||
QUIT
|
||||
;
|
||||
NDC2RXN2(NDC,SOURCE) ; $$ Public - Get RxCUI given the source
|
||||
|
|
@ -303,9 +321,9 @@ ISBRAND(RXN) ; $$ Public - Is this RxCUI for a brand drug?
|
|||
; Input: RxCUI
|
||||
; Output: 0 or 1
|
||||
Q ''$D(^C0CRXN(176.001,"STC","RXNORM","SBD",RXN))
|
||||
ISBRANDT ; @TEST - Test Is this RxCUI for a brand drug?
|
||||
D CHKEQ^XTMUNIT($$ISBRAND(205535),1,"$$ISBRAND failed") ; Brand Prozac
|
||||
D CHKEQ^XTMUNIT($$ISBRAND(310384),0,"$$ISBRAND failed") ; Generic Fluoxetine
|
||||
ISBRANDT ; @TEST Test Is this RxCUI for a brand drug?
|
||||
D CHKEQ^%ut($$ISBRAND(205535),1,"$$ISBRAND failed") ; Brand Prozac
|
||||
D CHKEQ^%ut($$ISBRAND(310384),0,"$$ISBRAND failed") ; Generic Fluoxetine
|
||||
QUIT
|
||||
;
|
||||
; ---
|
||||
|
|
@ -314,8 +332,8 @@ BR2GEN(RXN) ; $$ Public - Convert Brand RxCUI to Generic RxCUI (many to 1)
|
|||
; Input: RxCUI of Brand
|
||||
; Output: RxCUI of Generic
|
||||
Q $O(^C0CRXN(176.005,"B",RXN,"has_tradename",""))
|
||||
BR2GENT ; @TEST - Test Convert Brand RxCUI to Generic RxCUI (many to 1)
|
||||
D CHKEQ^XTMUNIT($$BR2GEN(205535),310384,"$$BR2GEN failed")
|
||||
BR2GENT ; @TEST Test Convert Brand RxCUI to Generic RxCUI (many to 1)
|
||||
D CHKEQ^%ut($$BR2GEN(205535),310384,"$$BR2GEN failed")
|
||||
QUIT
|
||||
;
|
||||
; ---
|
||||
|
|
@ -326,8 +344,8 @@ GEN2BR(RXN) ; $$ Public - Convert Generic RxCUI to Brand RxCUIs (1 to many).
|
|||
S RTN=$E(RTN,1,$L(RTN)-1)
|
||||
Q RTN
|
||||
;
|
||||
GEN2BRT ; @TEST - Test Convert Generic RxCUI to Brand RxCUIs (1 to many).
|
||||
D CHKTF^XTMUNIT($$GEN2BR(310384)[205535,"$$GEN2BR failed")
|
||||
GEN2BRT ; @TEST Test Convert Generic RxCUI to Brand RxCUIs (1 to many).
|
||||
D CHKTF^%ut($$GEN2BR(310384)[205535,"$$GEN2BR failed")
|
||||
QUIT
|
||||
;
|
||||
; ---
|
||||
|
|
@ -344,17 +362,63 @@ RXN2BNS(RXN) ; $$ Public - Get all Brand Names associated with an RXN
|
|||
. N BNIEN S BNIEN=$O(^C0CRXN(176.001,"B",BNRXCUI,""))
|
||||
. S BNS=BNS_$P(^C0CRXN(176.001,BNIEN,0),U,15)_U
|
||||
QUIT $E(BNS,1,$L(BNS)-1)
|
||||
RXN2BNST ; @TEST - Test Get all Brand Names associated with an RXN
|
||||
D CHKTF^XTMUNIT($$RXN2BNS(205535)["Prozac","$$RXN2BNS failed")
|
||||
RXN2BNST ; @TEST Test Get all Brand Names associated with an RXN
|
||||
D CHKTF^%ut($$RXN2BNS(205535)["Prozac","$$RXN2BNS failed")
|
||||
QUIT
|
||||
;
|
||||
; ---
|
||||
;
|
||||
RXN2NDC(RXN) ; Get NDC codes for RxNorm code
|
||||
RXN2NDC(RXN) ; $$ Public - Get NDC codes for RxNorm code
|
||||
N NDCS S NDCS=""
|
||||
N I F I=0:0 S I=$O(^C0CRXN(176.002,"ASAR","RXNORM","NDC",RXN,I)) Q:'I S NDCS=NDCS_^(I)_"^"
|
||||
S $E(NDCS,$L(NDCS))=""
|
||||
QUIT NDCS
|
||||
RXN2NDCT ; @TEST - Test Get NDC codes for RxNorm code
|
||||
D CHKTF^XTMUNIT($$RXN2NDC(197379)["^"_16714003309,"$$RXN2NDC failed")
|
||||
RXN2NDCT ; @TEST Test Get NDC codes for RxNorm code
|
||||
D CHKTF^%ut($$RXN2NDC(197379)["^"_16714003309,"$$RXN2NDC failed")
|
||||
QUIT
|
||||
;
|
||||
LVUID(RXN) ; $$ Public - Locate VUID, given RxNorm. Iterative Search
|
||||
; ^C0CRXN(176.001,"STC","RXNORM","IN",46239,IEN
|
||||
N TTY S TTY=""
|
||||
N intermediateRxCUI
|
||||
N finalVUID
|
||||
i '$$EXIST(RXN) q "0^not found in RxNorm"
|
||||
;
|
||||
F S TTY=$O(^C0CRXN(176.001,"STC","RXNORM",TTY)) Q:TTY="" D q:$g(intermediateRxCUI) q:$g(finalVUID)
|
||||
. N IEN S IEN=$O(^C0CRXN(176.001,"STC","RXNORM",TTY,RXN,""))
|
||||
. I 'IEN quit ; s err="0^not found in RxNorm" quit
|
||||
. ; W ^C0CRXN(176.001,IEN,0),!
|
||||
. I TTY="BN" s intermediateRxCUI=$$BR2GEN(RXN) quit ; try searching with generic
|
||||
. I TTY="IN"!(TTY="MIN") s finalVUID=$$RXN2VIN(RXN) quit ; match VUID
|
||||
. I TTY="PIN" s intermediateRxCUI=$$formOf(RXN) quit ; try searching with ingredient
|
||||
. I TTY="SCD" d
|
||||
.. s finalVUID=$$RXN2VUI(RXN)
|
||||
.. i finalVUID="" s finalVUID=$$containerOf(RXN)
|
||||
.. I finalVUID="" s finalVUID=$$tradeName(RXN)
|
||||
. I TTY="GPCK" d
|
||||
.. s finalVUID=$$tradeName(RXN)
|
||||
i $get(intermediateRxCUI) q $$LVUID(intermediateRxCUI) ; recurse
|
||||
i $get(finalVUID) quit finalVUID
|
||||
quit "0^no mapping found in RxNorm"
|
||||
;
|
||||
formOf(RXN) ; RXN is form of result
|
||||
q $o(^C0CRXN(176.005,"B",RXN,"has_form",""))
|
||||
containerOf(RXN) ; loop through all contains and see if one hits it.
|
||||
n container
|
||||
n vuid s vuid=""
|
||||
f container=0:0 s container=$o(^C0CRXN(176.005,"B",RXN,"contains",container)) q:'container d q:$g(vuid)
|
||||
. s vuid=$$RXN2VUI(container)
|
||||
quit vuid
|
||||
tradeName(RXN) ; loop through all tradenames and see if there's a match
|
||||
n vuid s vuid=""
|
||||
n tncui f tncui=0:0 s tncui=$o(^C0CRXN(176.005,"B",RXN,"tradename_of",tncui)) q:'tncui d q:$g(vuid)
|
||||
. s vuid=$$RXN2VUI(tncui)
|
||||
quit vuid
|
||||
;
|
||||
loopVUIDs ; [Public] Paste VUIDs to get the RxNorm Numbers
|
||||
; ZEXCEPT: DTIME
|
||||
n rxn
|
||||
f r rxn:$g(DTIME,300) q:rxn="" q:rxn=$c(4) d
|
||||
. w "|"
|
||||
. w $$LVUID(rxn),"|",$$ANYNAME(rxn),!
|
||||
quit
|
||||
|
|
|
|||
|
|
@ -1,182 +1,210 @@
|
|||
C0CRXNRD ; VEN/SMH - RxNorm Utilities: Routine to Read RxNorm files;2013-11-14 1:23 PM
|
||||
;;2.3;RXNORM FOR VISTA;;Jul 22, 2014;Build 10
|
||||
; (C) Sam Habiel 2013
|
||||
; See license for terms of use.
|
||||
;
|
||||
W "No entry from top" Q
|
||||
IMPORT(PATH,RESTRICTED) ; PUBLIC ENTRY POINT. Rest are private
|
||||
I PATH="" QUIT
|
||||
S RESTRICTED=$G(RESTRICTED,0)
|
||||
S U="^"
|
||||
N STARTTIME S STARTTIME=$P($H,",")*24*60*60+$P($H,",",2)
|
||||
N SABS
|
||||
D SAB(PATH,.SABS) ; Load restriction values into SAB. ; 176.006
|
||||
D CONSO(PATH,.SABS,RESTRICTED),SAT(PATH,.SABS,RESTRICTED) ; 176.001,176.002
|
||||
D STY(PATH),REL(PATH),DOC(PATH) ; 176.003-5
|
||||
N ENDTIME S ENDTIME=$P($H,",")*24*60*60+$P($H,",",2)
|
||||
W !,(ENDTIME-STARTTIME)/60_" minutes elapsed"
|
||||
QUIT
|
||||
;
|
||||
; Everything is private from down on...
|
||||
DELFILED(FN) ; Delete file data; PEP procedure; only for RxNorm files
|
||||
; FN is Filenumber passed by Value
|
||||
QUIT:$E(FN,1,3)'=176 ; Quit if not RxNorm files
|
||||
N ROOT S ROOT=$$ROOT^DILFD(FN,"",1) ; global root
|
||||
N ZERO S ZERO=@ROOT@(0) ; Save zero node
|
||||
S $P(ZERO,U,3,9999)="" ; Remove entry # and last edited
|
||||
K @ROOT ; Kill the file -- so sad!
|
||||
S @ROOT@(0)=ZERO ; It riseth again!
|
||||
QUIT
|
||||
GETLINES(PATH,FILENAME) ; Get number of lines in a file
|
||||
N POP
|
||||
D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
|
||||
Q:POP
|
||||
U IO
|
||||
N I,LINE
|
||||
F I=1:1 R LINE:0 Q:$$STATUS^%ZISH
|
||||
D CLOSE^%ZISH("FILE")
|
||||
Q I-1
|
||||
CONSO(PATH,SABS,RESTRICTED) ; Open and read concepts file: RXNCONSO.RRF
|
||||
; PATH ByVal, path of RxNorm files
|
||||
; SABS ByRef, arrays of SABS(SAB)=restriction level
|
||||
; RESTRICTED ByVal, include restricted sources. 1 for yes, 0 for no
|
||||
I PATH="" QUIT
|
||||
N FILENAME S FILENAME="RXNCONSO.RRF"
|
||||
D DELFILED(176.001) ; delete data
|
||||
N LINES S LINES=$$GETLINES(PATH,FILENAME)
|
||||
N POP
|
||||
D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
|
||||
IF POP D EN^DDIOL("Error reading file..., Please check...") G EX
|
||||
N C0CCOUNT
|
||||
F C0CCOUNT=1:1 D Q:$$STATUS^%ZISH
|
||||
. U IO
|
||||
. N LINE R LINE:0
|
||||
. IF $$STATUS^%ZISH QUIT
|
||||
. I '(C0CCOUNT#1000) U $P W C0CCOUNT," of ",LINES," read ",! U IO ; update every 1000
|
||||
. ;
|
||||
. ; Deal with restriction level
|
||||
. N SAB S SAB=$P(LINE,"|",12)
|
||||
. I 'RESTRICTED,SABS(SAB) QUIT ; If not include restricted, and SABS(SAB) is not zero, quit
|
||||
. ;
|
||||
. ; Save data
|
||||
. S ^C0CRXN(176.001,C0CCOUNT,0)=$TR(LINE,"|^","^|")
|
||||
EX D CLOSE^%ZISH("FILE")
|
||||
N DIK S DIK="^C0CRXN(176.001," D IXALL^DIK
|
||||
QUIT
|
||||
;
|
||||
;
|
||||
SAT(PATH,SABS,RESTRICTED) ; Open and read Concept and Atom attributes: RXNSAT.RRF
|
||||
; PATH ByVal, path of RxNorm files
|
||||
; SABS ByRef, arrays of SABS(SAB)=restriction level
|
||||
; RESTRICTED ByVal, include restricted sources. 1 for yes, 0 for no
|
||||
I PATH="" QUIT
|
||||
N FILENAME S FILENAME="RXNSAT.RRF"
|
||||
D DELFILED(176.002) ; delete data
|
||||
N LINES S LINES=$$GETLINES(PATH,FILENAME)
|
||||
N POP
|
||||
D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
|
||||
IF POP W "Error reading file..., Please check...",! G EX2
|
||||
N C0CCOUNT F C0CCOUNT=1:1 Q:$$STATUS^%ZISH D
|
||||
. U IO
|
||||
. N LINE R LINE:0
|
||||
. IF $$STATUS^%ZISH QUIT
|
||||
. I '(C0CCOUNT#1000) U $P W C0CCOUNT," of ",LINES," read ",! U IO ; update every 1000
|
||||
. ;
|
||||
. ; We switch around the fields .01 and .09 because the .01 isn't always present; where as .09 is required
|
||||
. N RXCUI1,ATN9
|
||||
. S RXCUI1=$P(LINE,"|",1)
|
||||
. S ATN9=$P(LINE,"|",9)
|
||||
. S $P(LINE,"|",1)=ATN9
|
||||
. S $P(LINE,"|",9)=RXCUI1
|
||||
. ;
|
||||
. ; Deal with restricted sources
|
||||
. N SAB S SAB=$P(LINE,"|",10)
|
||||
. I 'RESTRICTED,SABS(SAB) QUIT ; If not include restricted, and SABS(SAB) is not zero, quit
|
||||
. ;
|
||||
. ; Save off
|
||||
. S ^C0CRXN(176.002,C0CCOUNT,0)=$TR(LINE,"|^","^|")
|
||||
EX2 D CLOSE^%ZISH("FILE")
|
||||
N DIK S DIK="^C0CRXN(176.002," D IXALL^DIK
|
||||
QUIT
|
||||
;
|
||||
;
|
||||
SAB(PATH,SABS) ; Open the read RxNorm Sources file: RXNSAB.RRF
|
||||
I PATH="" QUIT
|
||||
N FILENAME S FILENAME="RXNSAB.RRF"
|
||||
D DELFILED(176.003) ; delete data
|
||||
N POP
|
||||
D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
|
||||
IF POP W "Error reading file..., Please check...",! G EX3
|
||||
N I F I=1:1 Q:$$STATUS^%ZISH D
|
||||
. U IO
|
||||
. N LINE R LINE:0
|
||||
. IF $$STATUS^%ZISH QUIT
|
||||
. U $P W I,! U IO ; Write I to the screen, then go back to reading the file
|
||||
. ; Switch pieces 1 and 4 because 4 is always defined. Goes into .01 field.
|
||||
. N VCUI S VCUI=$P(LINE,"|",1)
|
||||
. N RSAB S RSAB=$P(LINE,"|",4)
|
||||
. S $P(LINE,"|",1)=RSAB
|
||||
. S $P(LINE,"|",4)=VCUI
|
||||
. S ^C0CRXN(176.003,I,0)=$TR(LINE,"^|","|^")
|
||||
EX3 D CLOSE^%ZISH("FILE")
|
||||
N DIK S DIK="^C0CRXN(176.003," D IXALL^DIK
|
||||
N C0CI F C0CI=0:0 S C0CI=$O(^C0CRXN(176.003,C0CI)) Q:'C0CI D
|
||||
. S SABS($$GET1^DIQ(176.003,C0CI,.01))=$$GET1^DIQ(176.003,C0CI,"SRL")
|
||||
QUIT
|
||||
STY(PATH) ; Open and read RxNorm Semantic types file: RXNSTY.RRF
|
||||
I PATH="" QUIT
|
||||
N FILENAME S FILENAME="RXNSTY.RRF"
|
||||
D DELFILED(176.004) ; delete data
|
||||
N LINES S LINES=$$GETLINES(PATH,FILENAME) ; Get # of lines
|
||||
N POP
|
||||
D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
|
||||
IF POP W "Error reading file..., Please check...",! G EX4
|
||||
N I F I=1:1 Q:$$STATUS^%ZISH D
|
||||
. U IO
|
||||
. N LINE R LINE:0
|
||||
. IF $$STATUS^%ZISH QUIT
|
||||
. I '(I#1000) U $P W I," of ",LINES," read ",! U IO ; update every 1000
|
||||
. S ^C0CRXN(176.004,I,0)=$TR(LINE,"^|","|^")
|
||||
EX4 D CLOSE^%ZISH("FILE")
|
||||
N DIK S DIK="^C0CRXN(176.004," D IXALL^DIK
|
||||
QUIT
|
||||
;
|
||||
REL(PATH) ; Open and read RxNorm Relationships file: RXNREL.RRF
|
||||
I PATH="" QUIT
|
||||
N FILENAME S FILENAME="RXNREL.RRF"
|
||||
D DELFILED(176.005) ; delete data
|
||||
N LINES S LINES=$$GETLINES(PATH,FILENAME) ; Get # of lines
|
||||
N POP
|
||||
D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
|
||||
IF POP W "Error reading file..., Please check...",! G EX5
|
||||
N I F I=1:1 Q:$$STATUS^%ZISH D
|
||||
. U IO
|
||||
. N LINE R LINE:0
|
||||
. IF $$STATUS^%ZISH QUIT
|
||||
. I '(I#1000) U $P W I," of ",LINES," read ",! U IO ; update every 1000
|
||||
. ; swap RXCUI1 location with SAB b/c SAB is required so can be .01 field
|
||||
. N RXCUI1 S RXCUI1=$P(LINE,"|",1)
|
||||
. N SAB S SAB=$P(LINE,"|",11)
|
||||
. S $P(LINE,"|",1)=SAB
|
||||
. S $P(LINE,"|",11)=RXCUI1
|
||||
. S ^C0CRXN(176.005,I,0)=$TR(LINE,"^|","|^")
|
||||
EX5 D CLOSE^%ZISH("FILE")
|
||||
N DIK S DIK="^C0CRXN(176.005," D IXALL^DIK
|
||||
QUIT
|
||||
DOC(PATH) ; Open the read RxNorm Abbreviation Documentation file: RXNDOC.RRF
|
||||
I PATH="" QUIT
|
||||
N FILENAME S FILENAME="RXNDOC.RRF"
|
||||
D DELFILED(176.006) ; delete data
|
||||
N LINES S LINES=$$GETLINES(PATH,FILENAME) ; Get # of lines
|
||||
N POP
|
||||
D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
|
||||
IF POP W "Error reading file..., Please check...",! G EX6
|
||||
N I F I=1:1 Q:$$STATUS^%ZISH D
|
||||
. U IO
|
||||
. N LINE R LINE:0
|
||||
. IF $$STATUS^%ZISH QUIT
|
||||
. I '(I#1000) U $P W I," of ",LINES," read ",! U IO ; update every 1000
|
||||
. S ^C0CRXN(176.006,I,0)=$TR(LINE,"^|","|^")
|
||||
EX6 D CLOSE^%ZISH("FILE")
|
||||
N DIK S DIK="^C0CRXN(176.006," D IXALL^DIK
|
||||
QUIT
|
||||
C0CRXNRD ; VEN/SMH - RxNorm Utilities: Routine to Read RxNorm files;2013-11-14 1:23 PM
|
||||
;;2.5;RXNORM FOR VISTA;;Apr 27, 2016;Build 10
|
||||
; (C) Sam Habiel 2016
|
||||
; See license for terms of use.
|
||||
;
|
||||
W "No entry from top" Q
|
||||
IMPORT(PATH,RESTRICTED) ; PUBLIC ENTRY POINT. Rest are private
|
||||
I PATH="" QUIT
|
||||
S RESTRICTED=$G(RESTRICTED,0)
|
||||
S U="^"
|
||||
N STARTTIME S STARTTIME=$P($H,",")*24*60*60+$P($H,",",2)
|
||||
D SAB(PATH) ; Load restriction values into SAB. ; 176.006
|
||||
JOB SAT^C0CRXNRD(PATH,RESTRICTED) ; 176.002
|
||||
W "Jobbed off... "_$ZJOB_"."
|
||||
D CONSO(PATH,RESTRICTED) ; 176.001,176.002
|
||||
D STY(PATH),REL(PATH),DOC(PATH) ; 176.003-5
|
||||
N ENDTIME S ENDTIME=$P($H,",")*24*60*60+$P($H,",",2)
|
||||
W !,(ENDTIME-STARTTIME)/60_" minutes elapsed"
|
||||
QUIT
|
||||
;
|
||||
; Everything is private from down on...
|
||||
DELFILED(FN) ; Delete file data; PEP procedure; only for RxNorm files
|
||||
; FN is Filenumber passed by Value
|
||||
QUIT:$E(FN,1,3)'=176 ; Quit if not RxNorm files
|
||||
N ROOT S ROOT=$$ROOT^DILFD(FN,"",1) ; global root
|
||||
N ZERO S ZERO=@ROOT@(0) ; Save zero node
|
||||
S $P(ZERO,U,3,9999)="" ; Remove entry # and last edited
|
||||
K @ROOT ; Kill the file -- so sad!
|
||||
S @ROOT@(0)=ZERO ; It riseth again!
|
||||
QUIT
|
||||
GETLINES(PATH,FILENAME) ; Get number of lines in a file
|
||||
N POP
|
||||
D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
|
||||
Q:POP
|
||||
U IO
|
||||
N I,LINE
|
||||
F I=1:1 R LINE:0 Q:$$STATUS^%ZISH
|
||||
D CLOSE^%ZISH("FILE")
|
||||
Q I-1
|
||||
CONSO(PATH,RESTRICTED) ; Open and read concepts file: RXNCONSO.RRF
|
||||
; PATH ByVal, path of RxNorm files
|
||||
; SABS ByRef, arrays of SABS(SAB)=restriction level
|
||||
; RESTRICTED ByVal, include restricted sources. 1 for yes, 0 for no
|
||||
N SABS D LOADSABS(.SABS)
|
||||
I PATH="" QUIT
|
||||
N FILENAME S FILENAME="RXNCONSO.RRF"
|
||||
D DELFILED(176.001) ; delete data
|
||||
N LINES S LINES=$$GETLINES(PATH,FILENAME)
|
||||
N POP
|
||||
D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
|
||||
IF POP D EN^DDIOL("Error reading file..., Please check...") G EX
|
||||
N C0CCOUNT
|
||||
N C0CSUPP S C0CSUPP=0
|
||||
F C0CCOUNT=1:1 D Q:$$STATUS^%ZISH
|
||||
. U IO
|
||||
. N LINE R LINE:0
|
||||
. IF $$STATUS^%ZISH QUIT
|
||||
. I '(C0CCOUNT#1000) U $P W C0CCOUNT," of ",LINES," read ",! U IO ; update every 1000
|
||||
. ;
|
||||
. ; If suppressed, quit
|
||||
. N SUPP S SUPP=$P(LINE,"|",17)
|
||||
. I SUPP="O"!(SUPP="Y")!(SUPP="E") S C0CSUPP=C0CSUPP+1 QUIT
|
||||
. ;
|
||||
. ; Deal with restriction level
|
||||
. N SAB S SAB=$P(LINE,"|",12)
|
||||
. I 'RESTRICTED,SABS(SAB) QUIT ; If not include restricted, and SABS(SAB) is not zero, quit
|
||||
. ;
|
||||
. ; Save data
|
||||
. S ^C0CRXN(176.001,C0CCOUNT,0)=$TR(LINE,"|^","^|")
|
||||
EX D CLOSE^%ZISH("FILE")
|
||||
N DIK S DIK="^C0CRXN(176.001," D IXALL^DIK
|
||||
W "Suppressed: ",C0CSUPP,!
|
||||
QUIT
|
||||
;
|
||||
;
|
||||
SAT(PATH,RESTRICTED) ; Open and read Concept and Atom attributes: RXNSAT.RRF
|
||||
; PATH ByVal, path of RxNorm files
|
||||
; SABS ByRef, arrays of SABS(SAB)=restriction level
|
||||
; RESTRICTED ByVal, include restricted sources. 1 for yes, 0 for no
|
||||
N $ET S $ET="D ^%ZTER HALT"
|
||||
S U="^"
|
||||
I PATH="" QUIT
|
||||
N FILENAME S FILENAME="RXNSAT.RRF"
|
||||
D DELFILED(176.002) ; delete data
|
||||
N LINES S LINES=$$GETLINES(PATH,FILENAME)
|
||||
N POP
|
||||
D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
|
||||
IF POP W "Error reading file..., Please check...",! G EX2
|
||||
N SABS D LOADSABS(.SABS)
|
||||
N C0CSUPP S C0CSUPP=0
|
||||
N C0CCOUNT F C0CCOUNT=1:1 Q:$$STATUS^%ZISH D
|
||||
. U IO
|
||||
. N LINE R LINE:0
|
||||
. IF $$STATUS^%ZISH QUIT
|
||||
. I '(C0CCOUNT#1000) U $P W C0CCOUNT," of ",LINES," read ",! U IO ; update every 1000
|
||||
. ;
|
||||
. ; If suppressed, quit
|
||||
. N SUPP S SUPP=$P(LINE,"|",12)
|
||||
. I SUPP="O"!(SUPP="Y")!(SUPP="E") S C0CSUPP=C0CSUPP+1 QUIT
|
||||
. ;
|
||||
. ; We switch around the fields .01 and .09 because the .01 isn't always present; where as .09 is required
|
||||
. N RXCUI1,ATN9
|
||||
. S RXCUI1=$P(LINE,"|",1)
|
||||
. S ATN9=$P(LINE,"|",9)
|
||||
. S $P(LINE,"|",1)=ATN9
|
||||
. S $P(LINE,"|",9)=RXCUI1
|
||||
. ;
|
||||
. ; Deal with restricted sources
|
||||
. N SAB S SAB=$P(LINE,"|",10)
|
||||
. I 'RESTRICTED,SABS(SAB) QUIT ; If not include restricted, and SABS(SAB) is not zero, quit
|
||||
. ;
|
||||
. ; Save off
|
||||
. S ^C0CRXN(176.002,C0CCOUNT,0)=$TR(LINE,"|^","^|")
|
||||
EX2 D CLOSE^%ZISH("FILE")
|
||||
N DIK S DIK="^C0CRXN(176.002," D IXALL^DIK
|
||||
W "Suppressed: ",C0CSUPP,!
|
||||
QUIT
|
||||
;
|
||||
;
|
||||
SAB(PATH) ; Open the read RxNorm Sources file: RXNSAB.RRF
|
||||
I PATH="" QUIT
|
||||
N FILENAME S FILENAME="RXNSAB.RRF"
|
||||
D DELFILED(176.003) ; delete data
|
||||
N POP
|
||||
D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
|
||||
IF POP W "Error reading file..., Please check...",! G EX3
|
||||
N I F I=1:1 Q:$$STATUS^%ZISH D
|
||||
. U IO
|
||||
. N LINE R LINE:0
|
||||
. IF $$STATUS^%ZISH QUIT
|
||||
. U $P W I,! U IO ; Write I to the screen, then go back to reading the file
|
||||
. ; Switch pieces 1 and 4 because 4 is always defined. Goes into .01 field.
|
||||
. N VCUI S VCUI=$P(LINE,"|",1)
|
||||
. N RSAB S RSAB=$P(LINE,"|",4)
|
||||
. S $P(LINE,"|",1)=RSAB
|
||||
. S $P(LINE,"|",4)=VCUI
|
||||
. S ^C0CRXN(176.003,I,0)=$TR(LINE,"^|","|^")
|
||||
EX3 D CLOSE^%ZISH("FILE")
|
||||
N DIK S DIK="^C0CRXN(176.003," D IXALL^DIK
|
||||
QUIT
|
||||
;
|
||||
LOADSABS(SABS) ;
|
||||
N C0CI F C0CI=0:0 S C0CI=$O(^C0CRXN(176.003,C0CI)) Q:'C0CI D
|
||||
. S SABS($$GET1^DIQ(176.003,C0CI,.01))=$$GET1^DIQ(176.003,C0CI,"SRL")
|
||||
QUIT
|
||||
;
|
||||
STY(PATH) ; Open and read RxNorm Semantic types file: RXNSTY.RRF
|
||||
I PATH="" QUIT
|
||||
N FILENAME S FILENAME="RXNSTY.RRF"
|
||||
D DELFILED(176.004) ; delete data
|
||||
N LINES S LINES=$$GETLINES(PATH,FILENAME) ; Get # of lines
|
||||
N POP
|
||||
D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
|
||||
IF POP W "Error reading file..., Please check...",! G EX4
|
||||
N I F I=1:1 Q:$$STATUS^%ZISH D
|
||||
. U IO
|
||||
. N LINE R LINE:0
|
||||
. IF $$STATUS^%ZISH QUIT
|
||||
. I '(I#1000) U $P W I," of ",LINES," read ",! U IO ; update every 1000
|
||||
. S ^C0CRXN(176.004,I,0)=$TR(LINE,"^|","|^")
|
||||
EX4 D CLOSE^%ZISH("FILE")
|
||||
N DIK S DIK="^C0CRXN(176.004," D IXALL^DIK
|
||||
QUIT
|
||||
;
|
||||
REL(PATH) ; Open and read RxNorm Relationships file: RXNREL.RRF
|
||||
I PATH="" QUIT
|
||||
N FILENAME S FILENAME="RXNREL.RRF"
|
||||
D DELFILED(176.005) ; delete data
|
||||
N LINES S LINES=$$GETLINES(PATH,FILENAME) ; Get # of lines
|
||||
N POP
|
||||
D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
|
||||
IF POP W "Error reading file..., Please check...",! G EX5
|
||||
N C0CSUPP S C0CSUPP=0
|
||||
N I F I=1:1 Q:$$STATUS^%ZISH D
|
||||
. U IO
|
||||
. N LINE R LINE:0
|
||||
. ;
|
||||
. ; If suppressed, quit
|
||||
. N SUPP S SUPP=$P(LINE,"|",15)
|
||||
. I SUPP="O"!(SUPP="Y")!(SUPP="E") S C0CSUPP=C0CSUPP+1 QUIT
|
||||
. ;
|
||||
. IF $$STATUS^%ZISH QUIT
|
||||
. I '(I#1000) U $P W I," of ",LINES," read ",! U IO ; update every 1000
|
||||
. ; swap RXCUI1 location with SAB b/c SAB is required so can be .01 field
|
||||
. N RXCUI1 S RXCUI1=$P(LINE,"|",1)
|
||||
. N SAB S SAB=$P(LINE,"|",11)
|
||||
. S $P(LINE,"|",1)=SAB
|
||||
. S $P(LINE,"|",11)=RXCUI1
|
||||
. S ^C0CRXN(176.005,I,0)=$TR(LINE,"^|","|^")
|
||||
EX5 D CLOSE^%ZISH("FILE")
|
||||
N DIK S DIK="^C0CRXN(176.005," D IXALL^DIK
|
||||
W "Suppressed: ",C0CSUPP,!
|
||||
QUIT
|
||||
DOC(PATH) ; Open the read RxNorm Abbreviation Documentation file: RXNDOC.RRF
|
||||
I PATH="" QUIT
|
||||
N FILENAME S FILENAME="RXNDOC.RRF"
|
||||
D DELFILED(176.006) ; delete data
|
||||
N LINES S LINES=$$GETLINES(PATH,FILENAME) ; Get # of lines
|
||||
N POP
|
||||
D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
|
||||
IF POP W "Error reading file..., Please check...",! G EX6
|
||||
N I F I=1:1 Q:$$STATUS^%ZISH D
|
||||
. U IO
|
||||
. N LINE R LINE:0
|
||||
. IF $$STATUS^%ZISH QUIT
|
||||
. I '(I#1000) U $P W I," of ",LINES," read ",! U IO ; update every 1000
|
||||
. S ^C0CRXN(176.006,I,0)=$TR(LINE,"^|","|^")
|
||||
EX6 D CLOSE^%ZISH("FILE")
|
||||
N DIK S DIK="^C0CRXN(176.006," D IXALL^DIK
|
||||
QUIT
|
||||
|
|
|
|||
Loading…
Reference in New Issue