From 4da5eec12c3d579be78d1c2e6520e08385d7bc76 Mon Sep 17 00:00:00 2001
From: george <george>
Date: Tue, 14 Oct 2008 22:09:00 +0000
Subject: [PATCH] routines for testing SNOMED code retrieval

---
 p/GPLSNOA.m | 171 ++++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 171 insertions(+)
 create mode 100644 p/GPLSNOA.m

diff --git a/p/GPLSNOA.m b/p/GPLSNOA.m
new file mode 100644
index 0000000..ee837b9
--- /dev/null
+++ b/p/GPLSNOA.m
@@ -0,0 +1,171 @@
+GPLSNOA   ; CCDCCR/GPL - SNOMED CT ANALYSIS ROUTINES; 10/14/08
+ ;;0.1;CCDCCR;nopatch;noreleasedate
+ ;Copyright 2008 WorldVistA.  Licensed under the terms of the GNU
+ ;General Public License See attached copy of the License.
+ ;
+ ;This program is free software; you can redistribute it and/or modify
+ ;it under the terms of the GNU General Public License as published by
+ ;the Free Software Foundation; either version 2 of the License, or
+ ;(at your option) any later version.
+ ;
+ ;This program is distributed in the hope that it will be useful,
+ ;but WITHOUT ANY WARRANTY; without even the implied warranty of
+ ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ ;GNU General Public License for more details.
+ ;
+ ;You should have received a copy of the GNU General Public License along
+ ;with this program; if not, write to the Free Software Foundation, Inc.,
+ ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+ ;
+ ; THESE ROUTINES ANALYZE THE POTENTIAL RETRIEVAL OF SNOMED CT CODES
+ ; FOR PATIENT DRUG ALLERGIES FOR INCLUSION IN THE CCR OR CCD
+ ; USING THE VISTA LEXICON ^LEX
+ ;
+ANALYZE(BEGIEN,IENCNT) ; SNOMED RETRIEVAL ANALYSIS ROUTINE
+    ; BEGINS AT BEGIEN AND GOES FOR IENCNT DRUGS IN GMRD
+    ; TO RESUME AT NEXT DRUG, USE BEGIEN=""
+    ; USE RESET^GPLSNOA TO RESET TO TOP OF DRUG LIST
+    ;
+    N SNOARY,SNOTMP,SNOI,SNOIEN,RATTR
+    N CCRGLO
+    D ASETUP ; SET UP VARIABLES AND GLOBALS
+    D AINIT ; INITIALIZE ATTRIBUTE VALUE TABLE
+    I '$D(@SNOBASE@("RESUME")) S @SNOBASE@("RESUME")=$O(@GMRBASE@(1)) ;1ST TME
+    S RESUME=@SNOBASE@("RESUME") ; WHERE WE LEFT OFF LAST RUN
+    S SNOIEN=BEGIEN ; BEGIN WITH THE BEGIEN RECORD
+    I SNOIEN="" S SNOIEN=RESUME
+    I +SNOIEN=0 D  Q  ; AT THE END OF THE ALLERGY LIST
+    . W "END OF DRUG LIST, CALL RESET^GPLSNOA",!
+    F SNOI=1:1:IENCNT  D  Q:+SNOIEN=0  ; FOR IENCNT NUMBER OF PATIENTS OR END
+    . ;D CCRRPC^GPLCCR(.CCRGLO,SNOIEN,"CCR","","","") ;PROCESS THE CCR
+    . W SNOIEN,@GMRBASE@(SNOIEN,0),!
+    . N SNORTN ; RETURN ARRAY
+    . D TEXTRPC(.SNORTN,$P(@GMRBASE@(SNOIEN,0),"^",1))
+    . W SNORTN(1),!
+    . K @SNOBASE@("VARS",SNOIEN) ; CLEAR OUT OLD VARS
+    . ;
+    . ; EVALUATE THE VARIABLES AND CREATE AN ATTRIBUTE MAP
+    . ;
+    . S RATTR=$$SETATTR(SNOIEN) ; SET THE ATTRIBUTE STRING BASED ON THE VARS
+    . S @SNOBASE@("ATTR",SNOIEN)=RATTR ; SAVE THE ATRIBUTES FOR THIS DRUG
+    . ;
+    . N CATNAME,CATTBL
+    . S CATNAME=""
+    . D CPUSH(.CATNAME,SNOBASE,"SNOTBL",SNOIEN,RATTR) ; ADD TO CATEGORY
+    . ; W "CATEGORY NAME: ",CATNAME,!
+    . ;
+    . S SNOIEN=$O(@GMRBASE@(SNOIEN)) ; NEXT RECORD
+    . S @SNOBASE@("RESUME")=SNOIEN ; WHERE WE ARE LEAVING OFF THIS RUN
+    ; D PARY^GPLXPATH(@SNOBASE@("ATTRTBL"))
+    Q
+    ;
+TEXTRPC(ORTN,ITEXT) ; CALL THE LEXICON WITH ITEXT AND RETURN RESULTS IN ORTN
+ ;
+ W ITEXT,!
+ W $$TEXT^LEXTRAN(ITEXT,"","","SCT",.ORTN)
+ Q
+ ;
+ASETUP ; SET UP GLOBALS AND VARS SNOBASE AND SNOTBL
+      I '$D(SNOBASE) S SNOBASE=$NA(^TMP("GPLSNO"))
+      I '$D(@SNOBASE) S @SNOBASE=""
+      I '$D(GMRBASE) S GMRBASE=$NA(^GMRD(120.82))
+      I '$D(SNOTBL) S SNOTBL=$NA(^TMP("GPLSNO","SNOTBL","TABLE")) ; ATTR TABLE
+      S ^TMP("GPLSNO","TABLES","SNOTBL")=SNOTBL ; TABLE OF TABLES
+      Q
+      ;
+AINIT ; INITIALIZE ATTRIBUTE TABLE
+      I '$D(SNOBASE) D ASETUP ; FOR COMMAND LINE CALLS
+      K @SNOTBL
+      D APUSH^GPLRIMA(SNOTBL,"CODE")
+      D APUSH^GPLRIMA(SNOTBL,"NOCODE")
+      D APUSH^GPLRIMA(SNOTBL,"MULTICODE")
+      D APUSH^GPLRIMA(SNOTBL,"SUBMULTI")
+      D APUSH^GPLRIMA(SNOTBL,"DONE")
+      Q
+APOST(PRSLT,PTBL,PVAL) ; POST AN ATTRIBUTE PVAL TO PRSLT USING PTBL
+    ; PSRLT AND PTBL ARE PASSED BY NAME. PVAL IS A STRING
+    ; PTBL IS THE NAME OF A TABLE IN @SNOBASE@("TABLES") - "SNOTBL"=ALL VALUES
+    ; PVAL WILL BE PLACED IN THE STRING PRSLT AT $P(X,U,@PTBL@(PVAL))
+    I '$D(SNOBASE) D ASETUP ; FOR COMMANDLINE PROCESSING
+    N USETBL
+    I '$D(@SNOBASE@("TABLES",PTBL)) D  Q  ; NO TABLE
+    . W "ERROR NO SUCH TABLE",!
+    S USETBL=@SNOBASE@("TABLES",PTBL)
+    S $P(@PRSLT,U,@USETBL@(PVAL))=PVAL
+    Q
+SETATTR(SDFN) ; SET ATTRIBUTES BASED ON VARS
+    N SBASE,SATTR
+    S SBASE=$NA(@SNOBASE@("VARS",SDFN))
+    D APOST("SATTR","SNOTBL","DONE")
+    Q SATTR  ; GPL
+    I $D(@SBASE@("PROBLEMS",1)) D  ;
+    . D APOST("SATTR","SNOTBL","PROBLEMS")
+    . ; W "POSTING PROBLEMS",!
+    I $D(@SBASE@("VITALS",1)) D APOST("SATTR","SNOTBL","VITALS")
+    I $D(@SBASE@("MEDS",1)) D  ; IF THE PATIENT HAS MEDS VARIABLES
+    . D APOST("SATTR","SNOTBL","MEDS")
+    . N ZR,ZI
+    . D GETPA^GPLRIMA(.ZR,SDFN,"MEDS","MEDPRODUCTNAMECODEVALUE") ;CHECK FOR MED CODES
+    . I ZR(0)>0 D  ; VAR LOOKUP WAS GOOD, CHECK FOR NON=NULL RETURN
+    . . F ZI=1:1:ZR(0) D  ; LOOP THROUGH RETURNED VAR^VALUE PAIRS
+    . . . I $P(ZR(ZI),"^",2)'="" D APOST("SATTR","SNOTBL","MEDSCODE") ;CODES
+    . ; D PATD^GPLSNOA(2,"MEDS","MEDPRODUCTNAMECODEVALUE") CHECK FOR MED CODES
+    D APOST("SATTR","SNOTBL","NOTEXTRACTED") ; OUTPUT NOT YET PRODUCED
+    ; W "ATTRIBUTES: ",SATTR,!
+    Q SATTR
+    ;
+RESET ; KILL RESUME INDICATOR TO START OVER. ALSO KILL SNO TMP VALUES
+    K ^TMP("GPLSNO","RESUME")
+    K ^TMP("GPLSNO")
+    Q
+    ;
+CLIST ; LIST THE CATEGORIES
+    ;
+    I '$D(SNOBASE) D ASETUP ; FOR COMMAND LINE CALLS
+    N CLBASE,CLNUM,ZI,CLIDX
+    S CLBASE=$NA(@SNOBASE@("SNOTBL","CATS"))
+    S CLNUM=@CLBASE@(0)
+    F ZI=1:1:CLNUM D  ; LOOP THROUGH THE CATEGORIES
+    . S CLIDX=@CLBASE@(ZI)
+    . W "(",$P(@CLBASE@(CLIDX),"^",1)
+    . W ":",$P(@CLBASE@(CLIDX),"^",2),") "
+    . W CLIDX,!
+    ; D PARY^GPLXPATH(CLBASE)
+    Q
+    ;
+CPUSH(CATRTN,CBASE,CTBL,CDFN,CATTR) ; ADD PATIENTS TO CATEGORIES
+    ; AND PASS BACK THE NAME OF THE CATEGORY TO WHICH THE PATIENT
+    ; WAS ADDED IN CATRTN, WHICH IS PASSED BY REFERENCE
+    ; CBASE IS WHERE TO PUT THE CATEGORIES PASSED BY NAME
+    ; CTBL IS THE NAME OF THE TABLE USED TO CREATE THE ATTRIBUTES,
+    ; PASSED BY NAME AND USED TO CREATE CATEGORY NAMES IE "@CTBL_X"
+    ; WHERE X IS THE CATEGORY NUMBER. CTBL(0) IS THE NUMBER OF CATEGORIES
+    ; CATBL(X)=CATTR STORES THE ATTRIBUTE IN THE CATEGORY
+    ; CDFN IS THE PATIENT DFN, CATTR IS THE ATTRIBUTE STRING
+    ; THE LIST OF PATIENTS IN A CATEGORY IS STORED INDEXED BY CATEGORY
+    ; NUMBER IE CTBL_X(CDFN)=""
+    ;
+    ; N CCTBL,CENTRY,CNUM,CCOUNT,CPATLIST
+    S CCTBL=$NA(@CBASE@(CTBL,"CATS"))
+    ; W "CBASE: ",CCTBL,!
+    ;
+    I '$D(@CCTBL@(CATTR)) D  ; FIRST PATIENT IN THIS CATEGORY
+    . D PUSH^GPLXPATH(CCTBL,CATTR) ; ADD THE CATEGORY TO THE ARRAY
+    . S CNUM=@CCTBL@(0) ; ARRAY ENTRY NUMBER FOR THIS CATEGORY
+    . S CENTRY=CTBL_"_"_CNUM_U_0 ; TABLE ENTRY DEFAULT
+    . S @CCTBL@(CATTR)=CENTRY ; DEFAULT NON INCREMENTED TABLE ENTRY
+    . ; NOTE THAT P1 IS THE CATEGORY NAME MADE UP OF THE TABLE NAME
+    . ; AND CATGORY ARRAY NUMBER. P2 IS THE COUNT WHICH IS INITIALLY 0
+    ;
+    S CCOUNT=$P(@CCTBL@(CATTR),U,2) ; COUNT OF PATIENTS IN THIS CATEGORY
+    S CCOUNT=CCOUNT+1 ; INCREMENT THE COUNT
+    S $P(@CCTBL@(CATTR),U,2)=CCOUNT ; PUT IT BACK
+    ;
+    S CATRTN=$P(@CCTBL@(CATTR),U,1) ; THE CATEGORY NAME WHICH IS RETURNED
+    ;
+    S CPATLIST=$NA(@CBASE@(CTBL,"IENS",CATRTN)) ; BASE OF PAT LIST FOR THIS CAT
+    ; W "IENS BASE: ",CPATLIST,!
+    S @CPATLIST@(CDFN)="" ; ADD THIS PATIENT TO THE CAT PAT LIST
+    ;
+    Q
+    ;