From 62b6eeeaf09f97f482995ff27e994f91aae795ff Mon Sep 17 00:00:00 2001 From: george Date: Tue, 28 Jul 2009 02:41:32 +0000 Subject: [PATCH] lab rpms extract routines --- p/C0CENV.m | 220 +++++++++++++++++++++++++++++++++++++++++ p/C0CVORU.m | 274 ++++++++++++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 494 insertions(+) create mode 100644 p/C0CENV.m create mode 100644 p/C0CVORU.m diff --git a/p/C0CENV.m b/p/C0CENV.m new file mode 100644 index 0000000..6f5ea9f --- /dev/null +++ b/p/C0CENV.m @@ -0,0 +1,220 @@ +C0CENV ;WV/JMC - CCD/CCR Environment Check/Install Routine; July 21, 2009 + ;;1.0;C0C;;May 19, 2009; + ; + ; +ENV ; Does not prevent loading of the transport global. + ; Environment check is done only during the install. + ; + N XQA,XQAMSG + ; + ; + ; Make sure the patch name exist + ; + I '$D(XPDNM) D Q + . D BMES("No valid patch name exist") + . S XPDQUIT=2 + . D EXIT + ; + D CHECK + D EXIT + Q + ; + ; +CHECK ; Perform environment check + ; + I $S('$G(IOM):1,'$G(IOSL):1,$G(U)'="^":1,1:0) D + . D BMES("Terminal Device is not defined") + . S XPDQUIT=2 + ; + I $S('$G(DUZ):1,$D(DUZ)[0:1,$D(DUZ(0))[0:1,1:0) D + . D BMES("Please log in to set local DUZ... variables") + . S XPDQUIT=2 + ; + I $P($$ACTIVE^XUSER(DUZ),"^")'=1 D + . D BMES("You are not a valid user on this system") + . S XPDQUIT=2 + Q + ; + ; +EXIT ; + ; + ; + I $G(XPDQUIT) D BMES("--- Install Environment Check FAILED ---") Q + D BMES("--- Environment Check is Ok ---") + ; + Q + ; + ; +PRE ;Pre-install entry point + ; + ; No action needed in pre-install + D BMES("No action need for pre-install") + ; + Q + ; + ; +POST ;Post install + ; + ; Check for RPMS system with V LAB file. + ; + I $$VFILE^DILFD(9000010.09)'=1 Q + ; + S %=$$NEWCP^XPDUTL("RPMS1","POST1^C0CENV") + S %=$$NEWCP^XPDUTL("RPMS2","POST2^C0CENV") + S %=$$NEWCP^XPDUTL("RPMS3","POST3^C0CENV") + S %=$$NEWCP^XPDUTL("RPMS4","POST4^C0CENV") + S %=$$NEWCP^XPDUTL("RPMS5","POST5^C0CENV") + S %=$$NEWCP^XPDUTL("RPMS6","POST6^C0CENV") + S %=$$NEWCP^XPDUTL("RPMS7","POST7^C0CENV") + ; + Q + ; + ; +POST1 ; Checkpoint call back entry point. + ; Add new style ALR1 cross-reference to V LAB file. + ; + N MSG + S MSG="Starting installation of ALR1 cross-reference at "_$$HTE^XLFDT($H,"1Z") + D BMES(MSG) + D ALR1^C0CLA7DD + S MSG="Installation of ALR1 cross-reference completed at "_$$HTE^XLFDT($H,"1Z") + D BMES(MSG) + Q + ; + ; +POST2 ; Checkpoint call back entry point. + ; Add new style ALR2 cross-reference to V LAB file. + ; + N MSG + S MSG="Starting installation of ALR2 cross-reference at "_$$HTE^XLFDT($H,"1Z") + D BMES(MSG) + D ALR2^C0CLA7DD + S MSG="Installation of ALR2 cross-reference completed at "_$$HTE^XLFDT($H,"1Z") + D BMES(MSG) + Q + ; + ; +POST3 ; Checkpoint call back entry point. + ; Add new style ALR3 cross-reference to V LAB file. + ; + N MSG + S MSG="Starting installation of ALR3 cross-reference at "_$$HTE^XLFDT($H,"1Z") + D BMES(MSG) + D ALR3^C0CLA7DD + S MSG="Installation of ALR3 cross-reference completed at "_$$HTE^XLFDT($H,"1Z") + D BMES(MSG) + Q + ; + ; +POST4 ; Checkpoint call back entry point. + ; Add new style ALR4 cross-reference to V LAB file. + ; + N MSG + S MSG="Starting installation of ALR4 cross-reference at "_$$HTE^XLFDT($H,"1Z") + D BMES(MSG) + D ALR4^C0CLA7DD + S MSG="Installation of ALR4 cross-reference completed at "_$$HTE^XLFDT($H,"1Z") + D BMES(MSG) + Q + ; + ; +POST5 ; Checkpoint call back entry point. + ; Add new style ALR5 cross-reference to V LAB file. + ; + N MSG + S MSG="Starting installation of ALR5 cross-reference at "_$$HTE^XLFDT($H,"1Z") + D BMES(MSG) + D ALR5^C0CLA7DD + S MSG="Installation of ALR5 cross-reference completed at "_$$HTE^XLFDT($H,"1Z") + D BMES(MSG) + Q + ; + ; +POST6 ; Checkpoint call back entry point. + ; Check for RPMS system and determine LAB patch level + ; and need to load in C0C version of LA7 routines. + ; + N MSG + ; + ; Load and rename C0CQRY2 to LA7QRY2 if LA*5.2*69 not installed + I '$$PATCH^XPDUTL("LA*5.2*69") D + . S MSG="This system missing LAB patch LA*5.2*69" + . D BMES(MSG) + . S MSG="Renaming routine C0CQRY2 to LA7QRY2" + . D BMES(MSG) + . D LOAD("C0CQRY2") + . D SAVE("C0CQRY2","LA7QRY2") + ; + ; Load and rename C0CVOBX1 to LA7VOBX1 if LA*5.2*64 not installed. + I '$$PATCH^XPDUTL("LA*5.2*64") D + . S MSG="This system missing LAB patch LA*5.2*64" + . D BMES(MSG) + . S MSG="Renaming routine C0CVOBX1 to LA7VOBX1" + . D BMES(MSG) + . D LOAD("C0CVOBX1") + . D SAVE("C0CVOBX1","LA7VOBX1") + ; + ; Load and rename C0CQRY1 to LA7QRY1 if LA*5.2*68 not installed. + I '$$PATCH^XPDUTL("LA*5.2*68") D + . S MSG="Renaming routine C0CQRY1 to LA7QRY1" + . D BMES(MSG) + . D LOAD("C0CQRY1") + . D SAVE("C0CQYR1","LA7QRY1") + ; + Q + ; + ; +POST7 ; Checkpoint call back entry point. + ; Task setting the data in the indexes. + ; + N MSG,ZTDESC,ZTDTH,ZTIO,ZTSK,ZTRTN,ZTSAVE + ; + ; If TaskMan not running then peform post-intall directly (interactively) + I '$$TM^%ZTLOAD D Q + . S MSG="TaskMan is not running" + . D BMES(MSG) + . S MSG="Will run indexing interactively" + . D BMES(MSG) + . D REINDEX^C0CLA7DD + ; + ; If KIDS install has been tasked then run post-install during this task. + I $D(ZTQUEUED) D REINDEX^C0CLA7DD Q + ; + S MSG="Tasking setting data into new V LAB indexes" + D BMES(MSG) + ; + S ZTRTN="REINDEX^C0CLA7DD",ZTDESC="C0C post-install - V LAB x-refs indexing" + S ZTIO="",ZTDTH=$H,ZTSAVE("XP*")="" + D ^%ZTLOAD + ; + I ZTSK>0 D + . S MSG="Task "_ZTSK_" tasked to set data into ALR* cross-references to V LAB file." + . D BMES(MSG) + E D + . S MSG="Tasking of indexing of V LAB file failed" + . D BMES(MSG) + ; + ; + Q + ; + ; +BMES(STR) ; Write BMES^XPDUTL statements + ; + D BMES^XPDUTL($$CJ^XLFSTR(STR,IOM)) + ; + Q + ; + ; +LOAD(X) ; load routine X + N %N,DIF,XCNP + K ^TMP($J,X) + S DIF="^TMP($J,X,",XCNP=0 + X ^%ZOSF("LOAD") + Q + ; + ; +SAVE(OLD,NEW) ; restore routine X + N %,DIE,X,XCM,XCN,XCS + S DIE="^TMP($J,"_OLD_",",XCN=0,X=NEW + X ^%ZOSF("SAVE") + Q diff --git a/p/C0CVORU.m b/p/C0CVORU.m new file mode 100644 index 0000000..0051524 --- /dev/null +++ b/p/C0CVORU.m @@ -0,0 +1,274 @@ +C0C7VORU ;WV/JMC - Builder of HL7 Lab Results OBR/OBX/NTE based on RPMS V LAB file ;Jun 16, 2009 + ;;5.2;AUTOMATED LAB INSTRUMENTS;;Sep 27, 1994 + ; +EN(LA) ; called from C0CVLAB + ; variables + ; LA("HUID") - Host Unique ID from the local ACCESSION file (#68) + ; LA("SITE") - Ordering site IEN in the INSTITUTION file (#4) + ; LA("RUID") - Remote sites Unique ID from ACCESSION file (#68) + ; LA("ORD") - Free text ordered test name from WKLD CODE file (#64) + ; LA("NLT") - National Laboratory test code from WKLD CODE file (#64) + ; LA("LRIDT") - Inverse date/time the lab arrival time (accession date/time) + ; LA("SUB") - test subscript defined in LABORATORY TEST file (#60) + ; LA("LRDFN") - IEN in LAB DATA file (#63) + ; LA("ORD"), LA("NLT"), and LA("SUB") are sent for specific lab results. + ; LA("AUTO-INST") - Auto-Instrument + ; + N LA763,LA7NLT,LA7NVAF,LA7X,PRIMARY + ; + S PRIMARY=$$PRIM^VASITE(DT),LA("AUTO-INST")="" + I $G(PRIMARY)'="" D + . S PRIMARY=$$SITE^VASITE(DT,PRIMARY) + . S PRIMARY=$P(PRIMARY,U,3) + . S LA("AUTO-INST")="LA7V HOST "_PRIMARY + ; + I '$O(^LR(LA("LRDFN"),LA("SUB"),LA("LRIDT"),0)) D Q + . ; need to add error logging when no entry in 63. + ; + ; Get zeroth node of entry in #63. + S LA763(0)=$G(^LR(LA("LRDFN"),LA("SUB"),LA("LRIDT"),0)) + S LA7NLT=$G(LA("NLT")) + ; + S LA7NVAF=$$NVAF^LA7VHLU2(+LA("SITE")) + S LA7NTESN=0 + D ORC + ; + I $G(LA("SUB"))="CH" D CH + ;I $G(LA("SUB"))="MI" D MI^LA7VORU1 + ;I "SPCYEM"[$G(LA("SUB")) D AP^LA7VORU2 + Q + ; + ; +CH ; Build segments for "CH" subscript + ; + D OBR + D NTE + S LA7OBXSN=0 + D OBX + ; + Q + ; + ; +ORC ; Build ORC segment + ; + N LA763,LA7696,LA7DATA,LA7SM,LA7X,LA7Y,ORC + ; + S LA763(0)=$G(^LR(LA("LRDFN"),LA("SUB"),LA("LRIDT"),0)) + ; + S ORC(0)="ORC" + ; + ; Order control + S ORC(1)=$$ORC1^LA7VORC("RE") + ; + ; Remote UID + S ORC(2)=$$ORC2^LA7VORC(LA("RUID"),LA7FS,LA7ECH) + ; + ; Host UID + S ORC(3)=$$ORC3^LA7VORC(LA("HUID"),LA7FS,LA7ECH) + ; + ; Return shipping manifest if found + S LA7SM="",LA7696=0 + I LA("SITE")'="",LA("RUID")'="" S LA7696=$O(^LRO(69.6,"RST",LA("SITE"),LA("RUID"),0)) + I LA7696 S LA7SM=$P($G(^LRO(69.6,LA7696,0)),U,14) + I LA7SM'="" S ORC(4)=$$ORC4^LA7VORC(LA7SM,LA7FS,LA7ECH) + ; + ; Order status + ; DoD/CHCS requires ORC-5 valued otherwise will not process message + I LA7NVAF=1 S ORC(5)=$$ORC5^LA7VORC("CM",LA7FS,LA7ECH) + ; + ; Ordering provider + S (LA7X,LA7Y)="" + ; "CH" subscript stores requesting provider and requesting div/location. + I LA("SUB")="CH" D + . N LA7J + . S LA7J=$P(LA763(0),"^",13) + . I $P(LA7J,";",2)="SC(" S LA7Y=$$GET1^DIQ(44,$P(LA7J,";")_",",3,"I") + . I $P(LA7J,";",2)="DIC(4," S LA7Y=$P(LA7J,";") + . S LA7X=$P(LA763(0),"^",10) + ; + ; Other subscripts only store requesting provider + I "CYEMMISP"[LA("SUB") S LA7X=$P(LA763(0),"^",7) + ; Get default institution from MailMan Site Parameters file + I LA7Y="" S LA7Y=$$GET1^DIQ(4.3,"1,",217,"I") + S ORC(12)=$$ORC12^LA7VORC(LA7X,LA7Y,LA7FS,LA7ECH) + ; + ; Entering organization + S ORC(17)=$$ORC17^LA7VORC(LA7Y,LA7FS,LA7ECH) + ; + D BUILDSEG^LA7VHLU(.ORC,.LA7DATA,LA7FS) + D FILESEG^LA7VHLU(GBL,.LA7DATA) + ; + ; Check for flag to only build message but do not file + I '$G(LA7NOMSG) D FILE6249^LA7VHLU(LA76249P,.LA7DATA) + ; + Q + ; + ; +OBR ;Observation Request segment for Lab Order + ; + N LA761,LA762,LA7DATA,LA7PLOBR,LA7X,LA7Y,OBR + ; + ; Retrieve placer's OBR information stored in #69.6 + D RETOBR^LA7VHLU(LA("SITE"),LA("RUID"),LA("NLT"),.LA7PLOBR) + ; + ; Initialize OBR segment + S OBR(0)="OBR" + S OBR(1)=$$OBR1^LA7VOBR(.LA7OBRSN) + ; + ; Remote UID + S OBR(2)=$$OBR2^LA7VOBR(LA("RUID"),LA7FS,LA7ECH) + ; + ; Host UID + S OBR(3)=$$OBR3^LA7VOBR(LA("HUID"),LA7FS,LA7ECH) + ; + ; Universal service ID, build from info stored in #69.6 + S LA7X="" + I $G(LA7PLOBR("OBR-4"))'="" S OBR(4)=$$CNVFLD^LA7VHLU3(LA7PLOBR("OBR-4"),LA7PLOBR("ECH"),LA7ECH) + E S OBR(4)=$$OBR4^LA7VOBR(LA7NLT,"",LA7X,LA7FS,LA7ECH) + ; + ; Collection D/T + S OBR(7)=$$OBR7^LA7VOBR($P(LA763(0),U)) + ; + ; Specimen action code + ; If no OBR from PENDING ORDER file (#69.6) then assume added test. + I $G(LA7INTYP)=10,$G(LA7PLOBR("OBR-4"))="" S OBR(11)=$$OBR11^LA7VOBR("A") + ; + ; Infection Warning + S OBR(12)=$$OBR12^LA7VOBR(LRDFN,LA7FS,LA7ECH) + ; + ; Lab Arrival Time + ; "CH" subscript does not store lab arrival time, use collection time. + ; Other subscripts do store lab arrival time (date/time received). + I "CYEMMISP"[LA("SUB") S OBR(14)=$$OBR14^LA7VOBR($P(LA763(0),"^",10)) + I LA("SUB")="CH" S OBR(14)=$$OBR14^LA7VOBR($P(LA763(0),"^")) + ; + ; Specimen source + S (LA761,LA762)="" + I "CHMI"[LA("SUB") D + . S LA761=$P(LA763(0),U,5) + . I LA761="" D CREATE^LA7LOG(27) + . I LA("SUB")="MI" S LA762=$P(LA763(0),U,11) + S OBR(15)=$$OBR15^LA7VOBR(LA761,LA762,"",LA7FS,LA7ECH) + ; + ; Ordering provider + S (LA7X,LA7Y)="" + ; "CH" subscript stores requesting provider and requesting div/location. + I LA("SUB")="CH" D + . N LA7J + . S LA7J=$P(LA763(0),"^",13) + . I $P(LA7J,";",2)="SC(" S LA7Y=$$GET1^DIQ(44,$P(LA7J,";")_",",3,"I") + . I $P(LA7J,";",2)="DIC(4," S LA7Y=$P(LA7J,";") + . S LA7X=$P(LA763(0),"^",10) + ; + ; Other subscripts only store requesting provider + I "CYEMMISP"[LA("SUB") S LA7X=$P(LA763(0),"^",7) + ; Get default institution from MailMan Site Parameters file + I LA7Y="" S LA7Y=$$GET1^DIQ(4.3,"1,",217,"I") + S OBR(16)=$$ORC12^LA7VORC(LA7X,LA7Y,LA7FS,LA7ECH) + ; + ; Placer Field #1 (remote auto-inst) + ; Build from info stored in #69.6 + I $G(LA7PLOBR("OBR-18"))'="" D + . S OBR(18)=$$CHKDATA^LA7VHLU3(LA7PLOBR("OBR-18"),LA7FS_LA7ECH) + ; Else build "auto instrument" if sending to VA facility + I $G(LA7PLOBR("OBR-18"))="",'LA7NVAF D + . N LA7X + . S LA7X(1)=LA("AUTO-INST") + . S OBR(18)=$$OBR18^LA7VOBR(.LA7X,LA7FS,LA7ECH) + ; + ; Placer Field #2 + I $G(LA7PLOBR("OBR-19"))'="" D + . S OBR(19)=$$CHKDATA^LA7VHLU3(LA7PLOBR("OBR-19"),LA7FS_LA7ECH) + ; Else build collecting UID if sending to VA facility + I $G(LA7PLOBR("OBR-19"))="",'LA7NVAF,LA("RUID")'="" D + . K LA7X + . S LA7X(7)=LA("RUID") + . S OBR(19)=$$OBR19^LA7VOBR(.LA7X,LA7FS,LA7ECH) + ; + ; Filler Field #1 + ; Send file #63 ien info - used by HDR to track patient/specimen + K LA7X + S LA7X(1)=LA("LRDFN") + S LA7X(2)=LA("SUB") + S LA7X(3)=LA("LRIDT") + S OBR(20)=$$OBR20^LA7VOBR(.LA7X,LA7FS,LA7ECH) + ; + ; Date Report Completed + I $P(LA763(0),"^",3) S OBR(22)=$$OBR22^LA7VOBR($P(LA763(0),"^",3)) + ; + ; Diagnostic service id + S OBR(24)=$$OBR24^LA7VOBR(LA("SUB")_"^"_$G(LRSB)) + ; + ; Parent Result and Parent + I $D(LA7PARNT) D + . S OBR(26)=$$OBR26^LA7VOBR(LA7PARNT(1),LA7PARNT(2),LA7PARNT(3),LA7FS,LA7ECH) + . S OBR(29)=$$OBR29^LA7VOBR(LA("RUID"),LA("HUID"),LA7FS,LA7ECH) + ; + ; Principle result interpreter + ; Get default institution from MailMan Site Parameters file + I "CYEMMISP"[LA("SUB") D + . I LA("SUB")="MI" S LA7X=$P(LA763(0),"^",4) + . E S LA7X=$P(LA763(0),"^",2) + . S LA7Y=$$GET1^DIQ(4.3,"1,",217,"I") + . S OBR(32)=$$OBR32^LA7VOBR(LA7X,LA7Y,LA7FS,LA7ECH) + ; + ; Assistant result interpreter + ; Get default institution from MailMan Site Parameters file + I "EMSP"[LA("SUB") D + . S LA7X=$P(LA763(0),"^",4),LA7Y=$$GET1^DIQ(4.3,"1,",217,"I") + . S OBR(33)=$$OBR33^LA7VOBR(LA7X,LA7Y,LA7FS,LA7ECH) + ; + ; Technician + ; Get default institution from MailMan Site Parameters file + I "CYEM"[LA("SUB") D + . S LA7X=$P(LA763(0),"^",4),LA7Y=$$GET1^DIQ(4.3,"1,",217,"I") + . S OBR(34)=$$OBR34^LA7VOBR(LA7X,LA7Y,LA7FS,LA7ECH) + ; + ; Typist - VistA stores as free text + ; Get default institution from MailMan Site Parameters file + I "CYEMSP"[LA("SUB") D + . S LA7X=$P(LA763(0),"^",9),LA7Y=$$GET1^DIQ(4.3,"1,",217,"I") + . S OBR(35)=$$OBR35^LA7VOBR(LA7X,LA7Y,LA7FS,LA7ECH) + ; + D BUILDSEG^LA7VHLU(.OBR,.LA7DATA,LA7FS) + D FILESEG^LA7VHLU(GBL,.LA7DATA) + ; + ; Check for flag to only build message but do not file + I '$G(LA7NOMSG) D FILE6249^LA7VHLU(LA76249,.LA7DATA) + ; + Q + ; + ; +OBX ;Observation/Result segment for Lab Results + ; + N LA7953,LA7DATA,LA7VT,LA7VTIEN,LA7X + ; + S LA7VTIEN=0 + F S LA7VTIEN=$O(^LAHM(62.49,LA(62.49),1,LA7VTIEN)) Q:'LA7VTIEN D + . S LA7VT=$P(^LAHM(62.49,LA(62.49),1,LA7VTIEN,0),"^",1,2) + . ; Build OBX segment + . K LA7DATA + . D OBX^LA7VOBX(LA("LRDFN"),LA("SUB"),LA("LRIDT"),$P(LA7VT,"^",1,2),.LA7DATA,.LA7OBXSN,LA7FS,LA7ECH,$G(LA7NVAF)) + . ; If OBX failed to build then don't store + . I '$D(LA7DATA) Q + . ; + . D FILESEG^LA7VHLU(GBL,.LA7DATA) + . I '$G(LA7NOMSG) D FILE6249^LA7VHLU(LA76249,.LA7DATA) + . ; + . ; Send performing lab comment and interpretation from file #60 + . S LA7NTESN=0 + . I LA7NVAF=1 D PLC^LA7VORUA + . D INTRP^LA7VORUA + . ; + . ; Mark result as sent - set to 1, if corrected results set to 2 + . I LA("SUB")="CH" D + . . I $P(^LR(LA("LRDFN"),LA("SUB"),LA("LRIDT"),$P(LA7VT,"^")),"^",10)>1 Q + . . S $P(^LR(LA("LRDFN"),LA("SUB"),LA("LRIDT"),$P(LA7VT,"^")),"^",10)=$S($P(LA7VT,"^",2)="C":2,1:1) + ; + Q + ; + ; +NTE ; Build NTE segment + ; + D NTE^LA7VORUA + Q