Two routines modified: C0CRXNRD and C0CRXNLK.
C0CRXNRD (loader utility): - Can now import RxNorm prescribably subset - Will import public domain by default except if RESTRICTED is passed to IMPORT as 1 (second parameter). C0CRXNLK (lookup utilities): - FDB Unit Tests don't run if FDB from RxNorm isn't loaded. - New API: $$RXN2GCN - Get GCNs from RXNCUI (+UT). - New API: $$VUI2GCN - Get VUIDs from GCN (No UT supplied). - New API: $$RXN2NDC - Get NDCs for a given RxNorm CUI (+UT).
This commit is contained in:
sam
parent
57db47a584
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bd0d503cc5
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@ -1,132 +1,132 @@
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C0CRXNAD ; VEN/SMH - Add a drug to VISTA from RxNorm;2013-04-19 5:39 PM
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;;1.0;RX NORM;;Apr 25, 2012;Build 99
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; (C) 2013 Sam Habiel
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; Proprietary Code. Don't use if license terms aren't supplied.
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;
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ADDDRUG(RXN,NDC,BARCODE) ; Public Proc; Add Drug to Drug File
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; Input: RXN - RxNorm Semantic Clinical Drug CUI by Value. Required.
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; Input: NDC - Drug NDC by Value. Optional. Pass in 11 digit format without dashes.
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; Input: BARCODE - Wand Barcode. Optional. Pass exactly as wand reads minus control characters.
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; Output: Internal Entry Number
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;
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; Prelim Checks
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I '$G(RXN) S $EC=",U1," ; Required
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I $L($G(NDC)),$L(NDC)'=11 S $EC=",U1,"
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;
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N PSSZ S PSSZ=1 ; Needed for the drug file to let me in!
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;
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; If RXN refers to a brand drug, get the generic instead.
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I $$ISBRAND^C0CRXNLK(RXN) S RXN=$$BR2GEN^C0CRXNLK(RXN)
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W !,"(debug) RxNorm is "_RXN,!
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;
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; Get first VUID for this RxNorm drug
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N VUID S VUID=+$$RXN2VUI^C0CRXNLK(RXN)
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Q:'VUID
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W "(debug) VUID for RxNorm CUI "_RXN_" is "_VUID,!
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;
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; IEN in 50.68
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N C0XVUID ; For Searching Compound Index
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S C0XVUID(1)=VUID
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S C0XVUID(2)=1
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N F5068IEN S F5068IEN=$$FIND1^DIC(50.68,"","XQ",.C0XVUID,"AMASTERVUID")
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Q:'F5068IEN
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W "F 50.68 IEN (debug): "_F5068IEN,!
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;
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; FDA Array
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N C0XFDA
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;
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; Name, shortened
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S C0XFDA(50,"+1,",.01)=$E($$GET1^DIQ(50.68,F5068IEN,.01),1,40)
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;
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; File BarCode as a Synonym for BCMA
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I $L($G(BARCODE)) D
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. S C0XFDA(50.1,"+2,+1,",.01)=BARCODE
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. S C0XFDA(50.1,"+2,+1,",1)="Q"
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;
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; Brand Names
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N BNS S BNS=$$RXN2BNS^C0CRXNLK(RXN) ; Brands
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I $L(BNS) N I F I=1:1:$L(BNS,U) D
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. N IENS S IENS=I+2
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. S C0XFDA(50.1,"+"_IENS_",+1,",.01)=$$UP^XLFSTR($E($P(BNS,U,I),1,40))
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. S C0XFDA(50.1,"+"_IENS_",+1,",1)="T"
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;
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; NDC (string)
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I $G(NDC) S C0XFDA(50,"+1,",31)=$E(NDC,1,5)_"-"_$E(NDC,6,9)_"-"_$E(NDC,10,11)
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;
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; Dispense Unit (string)
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S C0XFDA(50,"+1,",14.5)=$$GET1^DIQ(50.68,F5068IEN,"VA DISPENSE UNIT")
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;
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; National Drug File Entry (pointer to 50.6)
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S C0XFDA(50,"+1,",20)="`"_$$GET1^DIQ(50.68,F5068IEN,"VA GENERIC NAME","I")
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;
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; VA Product Name (string)
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S C0XFDA(50,"+1,",21)=$E($$GET1^DIQ(50.68,F5068IEN,.01),1,70)
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;
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; PSNDF VA PRODUCT NAME ENTRY (pointer to 50.68)
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S C0XFDA(50,"+1,",22)="`"_F5068IEN
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;
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; DEA, SPECIAL HDLG (string)
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D ; From ^PSNMRG
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. N CS S CS=$$GET1^DIQ(50.68,F5068IEN,"CS FEDERAL SCHEDULE","I")
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. S CS=$S(CS?1(1"2n",1"3n"):+CS_"C",+CS=2!(+CS=3)&(CS'["C"):+CS_"A",1:CS)
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. S C0XFDA(50,"+1,",3)=CS
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;
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; NATIONAL DRUG CLASS (pointer to 50.605) (triggers VA Classification field)
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S C0XFDA(50,"+1,",25)="`"_$$GET1^DIQ(50.68,F5068IEN,"PRIMARY VA DRUG CLASS","I")
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;
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; Right Now, I don't file the following which ^PSNMRG does (cuz I don't need them)
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; - Package Size (derived from NDC/UPN file)
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; - Package Type (ditto)
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; - CMOP ID (from $$PROD2^PSNAPIS)
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; - National Formulary Indicator (from 50.68)
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;
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; Next Step is to kill Old OI if Dosage Form doesn't match
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; Won't do that here as it's assumed any drugs that's added is new.
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; This happens at ^PSNPSS
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;
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; Now add drug to drug file, as we need the IEN for the dosages call.
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N C0XERR,C0XIEN
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D UPDATE^DIE("E","C0XFDA","C0XIEN","C0XERR")
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S:$D(C0XERR) $EC=",U1,"
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;
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; Next Step: Kill off old doses and add new ones.
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D EN2^PSSUTIL(C0XIEN(1))
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;
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; Mark uses for the Drug; use the undocumented Silent call in PSSGIU
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N PSIUDA,PSIUX ; Expected Input variables
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S PSIUDA=C0XIEN(1),PSIUX="O^Outpatient Pharmacy" D ENS^PSSGIU
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S PSIUDA=C0XIEN(1),PSIUX="U^Unit Dose" D ENS^PSSGIU
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S PSIUDA=C0XIEN(1),PSIUX="X^Non-VA Med" D ENS^PSSGIU
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;
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; Get VA Generic text and VA Product pointer for Orderable Item creation plus dosage form information
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N VAGENP S VAGENP=$P(^PSDRUG(C0XIEN(1),"ND"),U) ; VA Generic Pointer
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N VAGEN S VAGEN=$$VAGN^PSNAPIS(VAGENP) ; VA Generic Full name
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N VAPRODP S VAPRODP=$P(^PSDRUG(C0XIEN(1),"ND"),U,3) ; VA Product Pointer
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N DOSAGE S DOSAGE=$$PSJDF^PSNAPIS(0,VAPRODP) ; IEN of dose form in 50.606 ^ Text
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N DOSEPTR S DOSEPTR=$P(DOSAGE,U) ; ditto
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N DOSEFORM S DOSEFORM=$P(DOSAGE,U,2) ;ditto
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;
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; Get the (possibly new) Orderable Item Text
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N VAG40 S VAG40=$E(VAGEN,1,40) ; Max length of .01 field
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;
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; See if there is an existing orderable item already. If so, populate the Pharmacy Orderable item on drug file.
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N OI S OI=$O(^PS(50.7,"ADF",VAG40,DOSEPTR,""))
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;
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; Otherwise, add a new one. (See MCHAN+12^PSSPOIMN)
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I 'OI D
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. N C0XFDA,C0XERR
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. S C0XFDA(50.7,"+1,",.01)=VAG40
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. S C0XFDA(50.7,"+1,",.02)=DOSEPTR
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. D UPDATE^DIE("",$NA(C0XFDA),$NA(OI),$NA(C0XERR))
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. I $D(C0XERR) S $EC=",U1,"
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. S OI=OI(1) ; For ease of use...
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. ; Next two statements: See FIN^PSSPOIM1 and MF^PSSDEE.
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. D EN^PSSPOIDT(OI) ; Update Indexes; activations, etc.
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. D EN2^PSSHL1(OI,"MUP") ; Send HL7 message to CPRS
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;
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; Finally, add the orderable Item to the drug file.
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N C0XFDA,C0XERR S C0XFDA(50,C0XIEN(1)_",",2.1)=OI ; Orderable Item
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D FILE^DIE("",$NA(C0XFDA),$NA(C0XERR))
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S:$D(C0XERR) $EC=",U1,"
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;
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EX QUIT C0XIEN(1)
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C0CRXNAD ; VEN/SMH - Add a drug to VISTA from RxNorm;2013-04-19 5:39 PM
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;;2.2;RXNORM FOR VISTA;;Nov 14, 2013;Build 8
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; (C) 2013 Sam Habiel
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; Proprietary Code. Don't use if license terms aren't supplied.
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;
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ADDDRUG(RXN,NDC,BARCODE) ; Public Proc; Add Drug to Drug File
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; Input: RXN - RxNorm Semantic Clinical Drug CUI by Value. Required.
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; Input: NDC - Drug NDC by Value. Optional. Pass in 11 digit format without dashes.
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; Input: BARCODE - Wand Barcode. Optional. Pass exactly as wand reads minus control characters.
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; Output: Internal Entry Number
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;
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; Prelim Checks
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I '$G(RXN) S $EC=",U1," ; Required
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I $L($G(NDC)),$L(NDC)'=11 S $EC=",U1,"
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;
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N PSSZ S PSSZ=1 ; Needed for the drug file to let me in!
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;
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; If RXN refers to a brand drug, get the generic instead.
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I $$ISBRAND^C0CRXNLK(RXN) S RXN=$$BR2GEN^C0CRXNLK(RXN)
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W !,"(debug) RxNorm is "_RXN,!
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;
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; Get first VUID for this RxNorm drug
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N VUID S VUID=+$$RXN2VUI^C0CRXNLK(RXN)
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Q:'VUID
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W "(debug) VUID for RxNorm CUI "_RXN_" is "_VUID,!
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;
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; IEN in 50.68
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N C0XVUID ; For Searching Compound Index
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S C0XVUID(1)=VUID
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S C0XVUID(2)=1
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N F5068IEN S F5068IEN=$$FIND1^DIC(50.68,"","XQ",.C0XVUID,"AMASTERVUID")
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Q:'F5068IEN
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W "F 50.68 IEN (debug): "_F5068IEN,!
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;
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; FDA Array
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N C0XFDA
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;
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; Name, shortened
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S C0XFDA(50,"+1,",.01)=$E($$GET1^DIQ(50.68,F5068IEN,.01),1,40)
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;
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; File BarCode as a Synonym for BCMA
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I $L($G(BARCODE)) D
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. S C0XFDA(50.1,"+2,+1,",.01)=BARCODE
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. S C0XFDA(50.1,"+2,+1,",1)="Q"
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;
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; Brand Names
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N BNS S BNS=$$RXN2BNS^C0CRXNLK(RXN) ; Brands
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I $L(BNS) N I F I=1:1:$L(BNS,U) D
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. N IENS S IENS=I+2
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. S C0XFDA(50.1,"+"_IENS_",+1,",.01)=$$UP^XLFSTR($E($P(BNS,U,I),1,40))
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. S C0XFDA(50.1,"+"_IENS_",+1,",1)="T"
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;
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; NDC (string)
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I $G(NDC) S C0XFDA(50,"+1,",31)=$E(NDC,1,5)_"-"_$E(NDC,6,9)_"-"_$E(NDC,10,11)
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;
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; Dispense Unit (string)
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S C0XFDA(50,"+1,",14.5)=$$GET1^DIQ(50.68,F5068IEN,"VA DISPENSE UNIT")
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;
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; National Drug File Entry (pointer to 50.6)
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S C0XFDA(50,"+1,",20)="`"_$$GET1^DIQ(50.68,F5068IEN,"VA GENERIC NAME","I")
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;
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; VA Product Name (string)
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S C0XFDA(50,"+1,",21)=$E($$GET1^DIQ(50.68,F5068IEN,.01),1,70)
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;
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; PSNDF VA PRODUCT NAME ENTRY (pointer to 50.68)
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S C0XFDA(50,"+1,",22)="`"_F5068IEN
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;
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; DEA, SPECIAL HDLG (string)
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D ; From ^PSNMRG
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. N CS S CS=$$GET1^DIQ(50.68,F5068IEN,"CS FEDERAL SCHEDULE","I")
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. S CS=$S(CS?1(1"2n",1"3n"):+CS_"C",+CS=2!(+CS=3)&(CS'["C"):+CS_"A",1:CS)
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. S C0XFDA(50,"+1,",3)=CS
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;
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; NATIONAL DRUG CLASS (pointer to 50.605) (triggers VA Classification field)
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S C0XFDA(50,"+1,",25)="`"_$$GET1^DIQ(50.68,F5068IEN,"PRIMARY VA DRUG CLASS","I")
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;
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; Right Now, I don't file the following which ^PSNMRG does (cuz I don't need them)
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; - Package Size (derived from NDC/UPN file)
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; - Package Type (ditto)
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; - CMOP ID (from $$PROD2^PSNAPIS)
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; - National Formulary Indicator (from 50.68)
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;
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; Next Step is to kill Old OI if Dosage Form doesn't match
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; Won't do that here as it's assumed any drugs that's added is new.
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; This happens at ^PSNPSS
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;
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; Now add drug to drug file, as we need the IEN for the dosages call.
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N C0XERR,C0XIEN
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D UPDATE^DIE("E","C0XFDA","C0XIEN","C0XERR")
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S:$D(C0XERR) $EC=",U1,"
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;
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; Next Step: Kill off old doses and add new ones.
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D EN2^PSSUTIL(C0XIEN(1))
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;
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; Mark uses for the Drug; use the undocumented Silent call in PSSGIU
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N PSIUDA,PSIUX ; Expected Input variables
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S PSIUDA=C0XIEN(1),PSIUX="O^Outpatient Pharmacy" D ENS^PSSGIU
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S PSIUDA=C0XIEN(1),PSIUX="U^Unit Dose" D ENS^PSSGIU
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S PSIUDA=C0XIEN(1),PSIUX="X^Non-VA Med" D ENS^PSSGIU
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;
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; Get VA Generic text and VA Product pointer for Orderable Item creation plus dosage form information
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N VAGENP S VAGENP=$P(^PSDRUG(C0XIEN(1),"ND"),U) ; VA Generic Pointer
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N VAGEN S VAGEN=$$VAGN^PSNAPIS(VAGENP) ; VA Generic Full name
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N VAPRODP S VAPRODP=$P(^PSDRUG(C0XIEN(1),"ND"),U,3) ; VA Product Pointer
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N DOSAGE S DOSAGE=$$PSJDF^PSNAPIS(0,VAPRODP) ; IEN of dose form in 50.606 ^ Text
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N DOSEPTR S DOSEPTR=$P(DOSAGE,U) ; ditto
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N DOSEFORM S DOSEFORM=$P(DOSAGE,U,2) ;ditto
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;
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; Get the (possibly new) Orderable Item Text
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N VAG40 S VAG40=$E(VAGEN,1,40) ; Max length of .01 field
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;
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; See if there is an existing orderable item already. If so, populate the Pharmacy Orderable item on drug file.
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N OI S OI=$O(^PS(50.7,"ADF",VAG40,DOSEPTR,""))
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;
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; Otherwise, add a new one. (See MCHAN+12^PSSPOIMN)
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I 'OI D
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. N C0XFDA,C0XERR
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. S C0XFDA(50.7,"+1,",.01)=VAG40
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. S C0XFDA(50.7,"+1,",.02)=DOSEPTR
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. D UPDATE^DIE("",$NA(C0XFDA),$NA(OI),$NA(C0XERR))
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. I $D(C0XERR) S $EC=",U1,"
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. S OI=OI(1) ; For ease of use...
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. ; Next two statements: See FIN^PSSPOIM1 and MF^PSSDEE.
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. D EN^PSSPOIDT(OI) ; Update Indexes; activations, etc.
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. D EN2^PSSHL1(OI,"MUP") ; Send HL7 message to CPRS
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;
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; Finally, add the orderable Item to the drug file.
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N C0XFDA,C0XERR S C0XFDA(50,C0XIEN(1)_",",2.1)=OI ; Orderable Item
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D FILE^DIE("",$NA(C0XFDA),$NA(C0XERR))
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S:$D(C0XERR) $EC=",U1,"
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;
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EX QUIT C0XIEN(1)
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@ -1,5 +1,5 @@
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C0CRXNLK ; VEN/SMH - RxNorm Lookup Utilities ;2013-04-10 7:01 PM
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;;1.0;RX NORM;;Apr 25, 2012;Build 99
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C0CRXNLK ; VEN/SMH - RxNorm Lookup Utilities ;2013-11-14 2:43 PM
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;;2.2;RXNORM FOR VISTA;;Nov 14, 2013;Build 8
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;(c) Sam Habiel 2013
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; See accompanying license. Don't use otherwise.
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;
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@ -9,7 +9,7 @@ C0CRXNLK ; VEN/SMH - RxNorm Lookup Utilities ;2013-04-10 7:01 PM
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D EN^XTMUNIT($T(+0),1)
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QUIT
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;
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EXIST(RXN) ; $$ Public - Does this RxNorm CUI exist?
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EXIST(RXN) ; $$ Public - Does this RxNorm CUI exist?
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; Input: RxNorm CUI by value
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; Output: Extrinsic
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Q ''$D(^C0CRXN(176.001,"B",RXN))
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@ -21,14 +21,15 @@ GCN2RXN(GCN) ; $$ Public - Get RxNorm CUI using GCN
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N IEN S IEN=$O(^C0CRXN(176.001,"STC","NDDF","CDC",GCN,"")) ; Get Entry
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Q ^(IEN)
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;
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GCN2RXNT ; @TEST - Test Get RxNorm CUI using GCN
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GCN2RXNT ; @TEST - Test Get RxNorm CUI using GCN
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Q:'$D(^C0CRXN(176.001,"STC","NDDF"))
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N L F L=1:1 N LN S LN=$T(GCN2RXND+L) Q:LN["<<END>>" Q:LN="" D
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. N GCN S GCN=$P(LN,";",3)
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. N RXN S RXN=$P(LN,";",4)
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. D CHKEQ^XTMUNIT($$GCN2RXN(GCN),RXN,"Translation from GCN to RXCUI failed")
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QUIT
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;
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GCN2RXND ; @DATA - Data for Tests ;;GCN;EXPECTED RXNCUI
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GCN2RXND ; @DATA - Data for Tests ;;GCN;EXPECTED RXNCUI
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;;16033;991632
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;;8208;310429
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;;1275;628953
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@ -38,6 +39,34 @@ GCN2RXND ; @DATA - Data for Tests ;;GCN;EXPECTED RXNCUI
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;
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;
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;
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RXN2GCN(RXNCUI) ; $$ Public - Get GCN(s) given an RxNorm Number
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; Input: RXNCUI by Value
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; Output: Caret delimited Extrinsic
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N GCNS S GCNS=""
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N I S I=""
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F S I=$O(^C0CRXN(176.001,"STX","NDDF","CDC",RXNCUI,I)) Q:I="" S GCNS=GCNS_+^(I)_U ; + b/c we want the GCN w/o leading zeros
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S GCNS=$E(GCNS,1,$L(GCNS)-1) ; remove trailing ^
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Q GCNS
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;
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RXN2GCNT ; @TEST - Test Get GCN from RXNCUI
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Q:'$D(^C0CRXN(176.001,"STX","NDDF"))
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N L F L=1:1 N LN S LN=$T(RXN2GCND+L) Q:LN["<<END>>" Q:LN="" D
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. N RXN S RXN=$P(LN,";",3)
|
||||
. N GCN S GCN=$P(LN,";",4)
|
||||
. D CHKEQ^XTMUNIT($$RXN2GCN(RXN),GCN,"Translation from RXCUI to GCN failed")
|
||||
QUIT
|
||||
;
|
||||
;
|
||||
RXN2GCND ; @DATA - Data for Tests ;;RXNORM CUI;Expected GCN; Human Readable Drug name for dear reader
|
||||
;;998689;5145;Acetabulol 200mg tab
|
||||
;;745679;5037;Albuterol Inhaler
|
||||
;;197320;2536;Allopurinol 300mg tab
|
||||
;;993691;3948^46236;Bupropion 75mg tab
|
||||
;;197591;3768;Diazepam 5mg tab
|
||||
;;<<END>>
|
||||
;
|
||||
;
|
||||
;
|
||||
RXN2VUI(RXNCUI) ; $$ Public - Get VUID(s) for given RXNCUI for Clinical Drug
|
||||
; Input: RXNCUI by Value
|
||||
; Output: Caret delimited extrinsic. Should not be more than 2 entries.
|
||||
|
|
@ -49,14 +78,14 @@ RXN2VUI(RXNCUI) ; $$ Public - Get VUID(s) for given RXNCUI for Clinical Drug
|
|||
; I $O(^C0CRXN(176.005,"RXCUIREL",RXN,"has_quantified_form","")) N QF S QF=$O(^("")) Q $O(^C0CRXN(176.001,"RXN2VUID",QF,""))
|
||||
Q C0PVUID
|
||||
;
|
||||
RXN2VUIT ; @TEST - Get VUIDs given RxNorm values
|
||||
RXN2VUIT ; @TEST - Get VUIDs given RxNorm values
|
||||
N L F L=1:1 N LN S LN=$T(RXN2VUID+L) Q:LN["<<END>>" Q:LN="" D
|
||||
. N RXN S RXN=$P(LN,";",3)
|
||||
. N VUIDS S VUIDS=$P(LN,";",4)
|
||||
. D CHKEQ^XTMUNIT($$RXN2VUI(RXN),VUIDS,"Translation from RXNCUI to VUID failed")
|
||||
QUIT
|
||||
;
|
||||
RXN2VUID ; @DATA - Data items for previous test
|
||||
RXN2VUID ; @DATA - Data items for previous test
|
||||
;;991632;4006455
|
||||
;;310429;4002369^4013941
|
||||
;;628953;4000874^4000856^4013966^4015798^4015799
|
||||
|
|
@ -75,14 +104,14 @@ VUI2VAP(VUID) ; $$ Public - Get VA Product IEN(s) from VUID
|
|||
S O=$E(O,1,$L(O)-1) ; remove trailing ^
|
||||
Q O
|
||||
;
|
||||
VUI2VAPT ; @TEST - Get VA Product IEN from VUID
|
||||
VUI2VAPT ; @TEST - Get VA Product IEN from VUID
|
||||
N L F L=1:1 N LN S LN=$T(VUI2VAPD+L) Q:LN["<<END>>" Q:LN="" D
|
||||
. N VUID S VUID=$P(LN,";",3)
|
||||
. N VAP S VAP=$P(LN,";",4)
|
||||
. D CHKEQ^XTMUNIT($$VUI2VAP(VUID),VAP,"Translation from VUID to VA PRODUCT failed")
|
||||
QUIT
|
||||
;
|
||||
VUI2VAPD ; @DATA - Data for above test
|
||||
VUI2VAPD ; @DATA - Data for above test
|
||||
;;4006455;5932
|
||||
;;4002369;1784
|
||||
;;4000874;252
|
||||
|
|
@ -111,7 +140,7 @@ VAP2MED(VAPROD) ; $$ Public - Get Drug(s) using VA Product IEN
|
|||
Q MEDS
|
||||
;
|
||||
;
|
||||
RXN2MEDS(RXNCUI) ; $$ Public - Convert RxNorm value to currently existing drugs in File 50.
|
||||
RXN2MEDS(RXNCUI) ; $$ Public - Convert RxNorm value to currently existing drugs in File 50.
|
||||
; Input: SCD RXNCUI
|
||||
; Output; Caret delimited extrinsic
|
||||
; Un-unit testable
|
||||
|
|
@ -122,7 +151,7 @@ RXN2MEDS(RXNCUI) ; $$ Public - Convert RxNorm value to currently existing drugs
|
|||
N I F I=1:1:$L(VUIDS,U) D Q:DONE
|
||||
. N VUID S VUID=$P(VUIDS,U,I)
|
||||
. N VAPRODS S VAPRODS=$$VUI2VAP(VUID) ; Get VA Product from VUID (multiple products per VUID)
|
||||
. I '$L(VAPRODS) S ^SAM(RXNCUI)="TELL SAM",DONE=1 QUIT ; MUST EXIST. Every VUID must have a product to go with it.
|
||||
. I '$L(VAPRODS) S $ECODE=",U-NO-VA-PRODUCT-CORRUPT-NDF," ; MUST EXIST. Every VUID must have a product to go with it.
|
||||
. N J F J=1:1:$L(VAPRODS,U) D Q:DONE
|
||||
. . N VAPROD S VAPROD=$P(VAPRODS,U,J)
|
||||
. . S MEDS=$$VAP2MED(VAPROD) ; Get Meds from VA Product
|
||||
|
|
@ -137,6 +166,7 @@ FDI2RXN(BASE) ; $$ Public - Get RxNorm CUI for FDB Ingredient/Base
|
|||
N IEN S IEN=$O(^C0CRXN(176.001,"STC","NDDF","IN",BASE,"")) Q ^(IEN)
|
||||
;
|
||||
FDI2RXNT ; @TEST - Test Get RxNorm CUI for FDB Ingredient/Base
|
||||
Q:'$D(^C0CRXN(176.001,"STC","NDDF"))
|
||||
D CHKEQ^XTMUNIT($$FDI2RXN(14739),1362160,"$$FDI2RXN failed")
|
||||
QUIT
|
||||
;
|
||||
|
|
@ -161,7 +191,7 @@ VIN2VAG(VUID) ; $$ Public - Get VA Generic for VUID Ingredient
|
|||
N C0P01 S C0P01=$$GET1^DIQ(50.6,C0PIEN,.01)
|
||||
Q C0PIEN_"^"_C0P01
|
||||
;
|
||||
VIN2VAGT ; @TEST - Test Get VA Generic for VUID Ingredient
|
||||
VIN2VAGT ; @TEST - Test Get VA Generic for VUID Ingredient
|
||||
D CHKEQ^XTMUNIT(+$$VIN2VAG(4023636),2832,"$$VIN2VAG failed")
|
||||
QUIT
|
||||
;
|
||||
|
|
@ -201,7 +231,17 @@ VUI2RXN(VUID) ; $$ Public - Get RXNCUI for VUID (any VUID type)
|
|||
S RXNS=$E(RXNS,1,$L(RXNS)-1)
|
||||
QUIT RXNS
|
||||
;
|
||||
MED2RXN(DA) ; $$ Public - Get RxNorm CUI for Drug
|
||||
VUI2GCN(VUID) ; $$ Public - Get GCNs for a given VUID (any VUID type)
|
||||
; Input: VUID by Value
|
||||
; Output: GCNs delimited by ^
|
||||
; TODO: Unit Test
|
||||
N RXNS S RXNS=$$VUI2RXN(VUID)
|
||||
N GCNS S GCNS=""
|
||||
N I F I=1:1:$L(RXNS,U) S GCNS=GCNS_$$RXN2GCN($P(RXNS,U,I))_U
|
||||
S GCNS=$E(GCNS,1,$L(GCNS)-1)
|
||||
QUIT GCNS
|
||||
;
|
||||
MED2RXN(DA) ; $$ Public - Get RxNorm CUI for Drug
|
||||
; Input: DA - Medication IEN
|
||||
; Output: RXNCUIs delimited by ^
|
||||
N ND S ND=$G(^PSDRUG(DA,"ND")) ; ND Node
|
||||
|
|
@ -211,7 +251,7 @@ MED2RXN(DA) ; $$ Public - Get RxNorm CUI for Drug
|
|||
I 'VUID S $EC=",U1," ; Must exist
|
||||
Q $$VUI2RXN(VUID)
|
||||
;
|
||||
MED2SCDN(DA) ; $$ Public - Medication to Semantic Clinical Drug Name
|
||||
MED2SCDN(DA) ; $$ Public - Medication to Semantic Clinical Drug Name
|
||||
; Input: DA - Medication IEN
|
||||
; Output: The Canonical Semantic Clinical Drug name
|
||||
N RXNCUI S RXNCUI=$$MED2RXN(DA)
|
||||
|
|
@ -238,53 +278,53 @@ VIN2NDI(VUID) ; $$ Public - Get NDDF Ingredient for VUID
|
|||
;
|
||||
; ---
|
||||
;
|
||||
NDC2RXN(NDC) ; $$ Public - Get RxCUI given the NDC
|
||||
NDC2RXN(NDC) ; $$ Public - Get RxCUI given the NDC
|
||||
; NB: Will only work if passed NDC is in 5-4-2 format.
|
||||
; Input: NDC By Value in 5-4-2 Format
|
||||
; Output: RxNorm Code.
|
||||
S NDC=$TR(NDC,"-")
|
||||
N IEN S IEN=$O(^C0CRXN(176.002,"ASAA","RXNORM","NDC",NDC,"")) Q ^(IEN)
|
||||
;
|
||||
NDC2RXNT ; @TEST - Test Get RxCUI given the NDC
|
||||
NDC2RXNT ; @TEST - Test Get RxCUI given the NDC
|
||||
D CHKEQ^XTMUNIT($$NDC2RXN("30142-0917-71"),198439,"$$NDC2RXN failed")
|
||||
QUIT
|
||||
;
|
||||
; ---
|
||||
;
|
||||
ISBRAND(RXN) ; $$ Public - Is this RxCUI for a brand drug?
|
||||
ISBRAND(RXN) ; $$ Public - Is this RxCUI for a brand drug?
|
||||
; Input: RxCUI
|
||||
; Output: 0 or 1
|
||||
Q ''$D(^C0CRXN(176.001,"STC","RXNORM","SBD",RXN))
|
||||
ISBRANDT ; @TEST - Test Is this RxCUI for a brand drug?
|
||||
ISBRANDT ; @TEST - Test Is this RxCUI for a brand drug?
|
||||
D CHKEQ^XTMUNIT($$ISBRAND(205535),1,"$$ISBRAND failed") ; Brand Prozac
|
||||
D CHKEQ^XTMUNIT($$ISBRAND(310384),0,"$$ISBRAND failed") ; Generic Fluoxetine
|
||||
QUIT
|
||||
;
|
||||
; ---
|
||||
;
|
||||
BR2GEN(RXN) ; $$ Public - Convert Brand RxCUI to Generic RxCUI (many to 1)
|
||||
BR2GEN(RXN) ; $$ Public - Convert Brand RxCUI to Generic RxCUI (many to 1)
|
||||
; Input: RxCUI of Brand
|
||||
; Output: RxCUI of Generic
|
||||
Q $O(^C0CRXN(176.005,"B",RXN,"has_tradename",""))
|
||||
BR2GENT ; @TEST - Test Convert Brand RxCUI to Generic RxCUI (many to 1)
|
||||
BR2GENT ; @TEST - Test Convert Brand RxCUI to Generic RxCUI (many to 1)
|
||||
D CHKEQ^XTMUNIT($$BR2GEN(205535),310384,"$$BR2GEN failed")
|
||||
QUIT
|
||||
;
|
||||
; ---
|
||||
;
|
||||
GEN2BR(RXN) ; $$ Public - Convert Generic RxCUI to Brand RxCUIs (1 to many).
|
||||
GEN2BR(RXN) ; $$ Public - Convert Generic RxCUI to Brand RxCUIs (1 to many).
|
||||
N RTN S RTN="" ; Return
|
||||
N I S I="" F S I=$O(^C0CRXN(176.005,"B",RXN,"tradename_of",I)) Q:'I S RTN=RTN_I_U
|
||||
S RTN=$E(RTN,1,$L(RTN)-1)
|
||||
Q RTN
|
||||
;
|
||||
GEN2BRT ; @TEST - Test Convert Generic RxCUI to Brand RxCUIs (1 to many).
|
||||
GEN2BRT ; @TEST - Test Convert Generic RxCUI to Brand RxCUIs (1 to many).
|
||||
D CHKTF^XTMUNIT($$GEN2BR(310384)[205535,"$$GEN2BR failed")
|
||||
QUIT
|
||||
;
|
||||
; ---
|
||||
;
|
||||
RXN2BNS(RXN) ; $$ Public - Get all Brand Names associated with an RXN
|
||||
RXN2BNS(RXN) ; $$ Public - Get all Brand Names associated with an RXN
|
||||
N BNS S BNS=""
|
||||
I $$ISBRAND(RXN) S RXN=$$BR2GEN(RXN)
|
||||
N ALLBN S ALLBN=$$GEN2BR(RXN)
|
||||
|
|
@ -296,6 +336,17 @@ RXN2BNS(RXN) ; $$ Public - Get all Brand Names associated with an RXN
|
|||
. N BNIEN S BNIEN=$O(^C0CRXN(176.001,"B",BNRXCUI,""))
|
||||
. S BNS=BNS_$P(^C0CRXN(176.001,BNIEN,0),U,15)_U
|
||||
QUIT $E(BNS,1,$L(BNS)-1)
|
||||
RXN2BNST ; @TEST - Test Get all Brand Names associated with an RXN
|
||||
RXN2BNST ; @TEST - Test Get all Brand Names associated with an RXN
|
||||
D CHKTF^XTMUNIT($$RXN2BNS(205535)["Prozac","$$RXN2BNS failed")
|
||||
QUIT
|
||||
;
|
||||
; ---
|
||||
;
|
||||
RXN2NDC(RXN) ; Get NDC codes for RxNorm code
|
||||
N NDCS S NDCS=""
|
||||
N I F I=0:0 S I=$O(^C0CRXN(176.002,"ASAR","RXNORM","NDC",RXN,I)) Q:'I S NDCS=NDCS_^(I)_"^"
|
||||
S $E(NDCS,$L(NDCS))=""
|
||||
QUIT NDCS
|
||||
RXN2NDCT ; @TEST - Test Get NDC codes for RxNorm code
|
||||
D CHKTF^XTMUNIT($$RXN2NDC(197379)["^"_16714003309,"$$RXN2NDC failed")
|
||||
QUIT
|
||||
|
|
|
|||
|
|
@ -1,14 +1,18 @@
|
|||
C0CRXNRD ; VEN/SMH - RxNorm Utilities: Routine to Read RxNorm files;2013-03-06 4:32 PM
|
||||
;;2.0;RX NORM;;May 11, 2012;Build 50
|
||||
C0CRXNRD ; VEN/SMH - RxNorm Utilities: Routine to Read RxNorm files;2013-11-14 1:23 PM
|
||||
;;2.2;RXNORM FOR VISTA;;Nov 14, 2013;Build 8
|
||||
; (C) Sam Habiel 2013
|
||||
; See license for terms of use.
|
||||
;
|
||||
W "No entry from top" Q
|
||||
IMPORT(PATH) ; PUBLIC ENTRY POINT. Rest are private
|
||||
IMPORT(PATH,RESTRICTED) ; PUBLIC ENTRY POINT. Rest are private
|
||||
I PATH="" QUIT
|
||||
S RESTRICTED=$G(RESTRICTED,0)
|
||||
S U="^"
|
||||
N STARTTIME S STARTTIME=$P($H,",")*24*60*60+$P($H,",",2)
|
||||
D SAB(PATH),CONSO(PATH),SAT(PATH),STY(PATH),REL(PATH),DOC(PATH)
|
||||
N SABS
|
||||
D SAB(PATH,.SABS) ; Load restriction values into SAB. ; 176.006
|
||||
D CONSO(PATH,.SABS,RESTRICTED),SAT(PATH,.SABS,RESTRICTED) ; 176.001,176.002
|
||||
D STY(PATH),REL(PATH),DOC(PATH) ; 176.003-5
|
||||
N ENDTIME S ENDTIME=$P($H,",")*24*60*60+$P($H,",",2)
|
||||
W !,(ENDTIME-STARTTIME)/60_" minutes elapsed"
|
||||
QUIT
|
||||
|
|
@ -24,17 +28,19 @@ DELFILED(FN) ; Delete file data; PEP procedure; only for RxNorm files
|
|||
S @ROOT@(0)=ZERO ; It riseth again!
|
||||
QUIT
|
||||
GETLINES(PATH,FILENAME) ; Get number of lines in a file
|
||||
N POP
|
||||
D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
|
||||
Q:POP
|
||||
U IO
|
||||
N I,LINE
|
||||
F I=1:1 R LINE:0 Q:$$STATUS^%ZISH
|
||||
D CLOSE^%ZISH("FILE")
|
||||
Q I-1
|
||||
CONSO(PATH,INCRES) ; Open and read concepts file: RXNCONSO.RRF
|
||||
CONSO(PATH,SABS,RESTRICTED) ; Open and read concepts file: RXNCONSO.RRF
|
||||
; PATH ByVal, path of RxNorm files
|
||||
; INCRES ByVal, include restricted sources. 1 for yes, 0 for no
|
||||
; SABS ByRef, arrays of SABS(SAB)=restriction level
|
||||
; RESTRICTED ByVal, include restricted sources. 1 for yes, 0 for no
|
||||
I PATH="" QUIT
|
||||
S INCRES=+$G(INCRES) ; if not passed, becomes zero.
|
||||
N FILENAME S FILENAME="RXNCONSO.RRF"
|
||||
D DELFILED(176.001) ; delete data
|
||||
N LINES S LINES=$$GETLINES(PATH,FILENAME)
|
||||
|
|
@ -47,20 +53,22 @@ CONSO(PATH,INCRES) ; Open and read concepts file: RXNCONSO.RRF
|
|||
. N LINE R LINE:0
|
||||
. IF $$STATUS^%ZISH QUIT
|
||||
. I '(C0CCOUNT#1000) U $P W C0CCOUNT," of ",LINES," read ",! U IO ; update every 1000
|
||||
. ;
|
||||
. ; Deal with restriction level
|
||||
. N SAB S SAB=$P(LINE,"|",12)
|
||||
. I 'RESTRICTED,SABS(SAB) QUIT ; If not include restricted, and SABS(SAB) is not zero, quit
|
||||
. ;
|
||||
. ; Save data
|
||||
. S ^C0CRXN(176.001,C0CCOUNT,0)=$TR(LINE,"|^","^|")
|
||||
. ; TODO Implement Filtering:
|
||||
. ; If the source is a restricted source, decide what to do based on what's asked.
|
||||
. ; N SRCIEN S SRCIEN=$$FIND1^DIC(176.003,"","QX",SAB,"B") ; SrcIEN in RXNORM SOURCES file
|
||||
. ; N RESTRIC S RESTRIC=$$GET1^DIQ(176.003,SRCIEN,14,"I") ; 14 is restriction field; values 0-4
|
||||
. ; If RESTRIC is zero, then it's unrestricted. Everything else is restricted.
|
||||
. ; If user didn't ask to include restricted sources, and the source is restricted, then quit
|
||||
. ; I 'INCRES,RESTRIC QUIT
|
||||
EX D CLOSE^%ZISH("FILE")
|
||||
N DIK S DIK="^C0CRXN(176.001," D IXALL^DIK
|
||||
QUIT
|
||||
;
|
||||
;
|
||||
SAT(PATH) ; Open and read Concept and Atom attributes: RXNSAT.RRF
|
||||
SAT(PATH,SABS,RESTRICTED) ; Open and read Concept and Atom attributes: RXNSAT.RRF
|
||||
; PATH ByVal, path of RxNorm files
|
||||
; SABS ByRef, arrays of SABS(SAB)=restriction level
|
||||
; RESTRICTED ByVal, include restricted sources. 1 for yes, 0 for no
|
||||
I PATH="" QUIT
|
||||
N FILENAME S FILENAME="RXNSAT.RRF"
|
||||
D DELFILED(176.002) ; delete data
|
||||
|
|
@ -81,6 +89,10 @@ SAT(PATH) ; Open and read Concept and Atom attributes: RXNSAT.RRF
|
|||
. S $P(LINE,"|",1)=ATN9
|
||||
. S $P(LINE,"|",9)=RXCUI1
|
||||
. ;
|
||||
. ; Deal with restricted sources
|
||||
. N SAB S SAB=$P(LINE,"|",10)
|
||||
. I 'RESTRICTED,SABS(SAB) QUIT ; If not include restricted, and SABS(SAB) is not zero, quit
|
||||
. ;
|
||||
. ; Save off
|
||||
. S ^C0CRXN(176.002,C0CCOUNT,0)=$TR(LINE,"|^","^|")
|
||||
EX2 D CLOSE^%ZISH("FILE")
|
||||
|
|
@ -88,7 +100,7 @@ EX2 D CLOSE^%ZISH("FILE")
|
|||
QUIT
|
||||
;
|
||||
;
|
||||
SAB(PATH) ; Open the read RxNorm Sources file: RXNSAB.RRF
|
||||
SAB(PATH,SABS) ; Open the read RxNorm Sources file: RXNSAB.RRF
|
||||
I PATH="" QUIT
|
||||
N FILENAME S FILENAME="RXNSAB.RRF"
|
||||
D DELFILED(176.003) ; delete data
|
||||
|
|
@ -108,6 +120,8 @@ SAB(PATH) ; Open the read RxNorm Sources file: RXNSAB.RRF
|
|||
. S ^C0CRXN(176.003,I,0)=$TR(LINE,"^|","|^")
|
||||
EX3 D CLOSE^%ZISH("FILE")
|
||||
N DIK S DIK="^C0CRXN(176.003," D IXALL^DIK
|
||||
N C0CI F C0CI=0:0 S C0CI=$O(^C0CRXN(176.003,C0CI)) Q:'C0CI D
|
||||
. S SABS($$GET1^DIQ(176.003,C0CI,.01))=$$GET1^DIQ(176.003,C0CI,"SRL")
|
||||
QUIT
|
||||
STY(PATH) ; Open and read RxNorm Semantic types file: RXNSTY.RRF
|
||||
I PATH="" QUIT
|
||||
|
|
|
|||
Loading…
Reference in New Issue