VistA-ccr/p/C0CNHIN.m

322 lines
10 KiB
Mathematica

C0CNHIN ; GPL - PROCESSING FOR OUTPUT OF NHINV ROUTINES;6/3/11 17:05
;;1.2;CCD/CCR GENERATION UTILITIES;;Oct 30, 2012;Build 50
;Copyright 2011 George Lilly.
;
; This program is free software: you can redistribute it and/or modify
; it under the terms of the GNU Affero General Public License as
; published by the Free Software Foundation, either version 3 of the
; License, or (at your option) any later version.
;
; This program is distributed in the hope that it will be useful,
; but WITHOUT ANY WARRANTY; without even the implied warranty of
; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
; GNU Affero General Public License for more details.
;
; You should have received a copy of the GNU Affero General Public License
; along with this program. If not, see <http://www.gnu.org/licenses/>.
;
Q
EN(ZRTN,ZDFN,ZPART,KEEP) ; GENERATE AN NHIN ARRAY FOR A PATIENT
;
K GARY,GNARY,GIDX,C0CDOCID
N GN
K ^TMP("NHINV",$J) ; CLEAN UP FROM LAST CALL
K ^TMP("MXMLDOM",$J) ; CLEAN UP DOM
K ^TMP("MXMLERR",$J) ; CLEAN UP MXML ERRORS
D GET^NHINV(.GN,ZDFN,ZPART) ; CALL NHINV ROUTINES TO PULL XML
S GN=$P(GN,")",1)_")" ; CUT OFF THE REST OF LINE PROTOCOL
S C0CDOCID=$$PARSE(GN,"NHINARRAY") ; PARSE WITH MXML
D DOMO^C0CDOM(C0CDOCID,"/","ZRTN","GIDX","GARY",,"/results/") ; BLD ARRAYS
I '$G(KEEP) K GIDX,GARY ; GET RID OF THE ARRAYS UNLESS KEEP=1
;D PROCESS("ZRTN",GN,"/result/",$G(KEEP))
Q
;
PQRI(ZOUT,KEEP) ; RETURN THE NHIN ARRAY FOR THE PQRI XML TEMPLATE
;
N ZG
S ZG=$NA(^TMP("PQRIXML",$J))
K @ZG
D GETXML^C0CMXP(ZG,"PQRIXML") ; GET THE XML FROM C0C MISC XML
N C0CDOCID
S C0CDOCID=$$PARSE^C0CDOM(ZG,"PQRIXML") ; PARSE THE XML
D DOMO^C0CDOM(C0CDOCID,"/","ZOUT","GIDX","GARY",,"//submission") ; BLD ARRAYS
I '$G(KEEP) K GIDX,GARY ; GET RID OF THE ARRAYS UNLESS KEEP=1
Q
;
PQRI2(ZRTN) ; RETURN THE NHIN ARRAY FOR PQRI ONE MEASURE
;
;N GG
D GETXML^C0CMXP("GG","PQRI ONE MEASURE")
D PROCESS(ZRTN,"GG","root",1)
Q
;
PROCESS(ZRSLT,ZXML,ZREDUCE,KEEP) ; PARSE AND RUN DOMO ON XML
; ZRTN IS PASSED BY REFERENCE
; ZXML IS PASSED BY NAME
; IF KEEP IS 1, GARY AND GIDX ARE NOT KILLED
;
N GN
S GN=$NA(^TMP("C0CPROCESS",$J))
K @GN
M @GN=@ZXML
S C0CDOCID=$$PARSE(GN,"NHINARRAY") ; PARSE WITH MXML
K @GN
D DOMO^C0CDOM(C0CDOCID,"/","ZRSLT","GIDX","GARY",,$G(ZREDUCE)) ; BLD ARRAYS
I '$G(KEEP) K GIDX,GARY ; GET RID OF THE ARRAYS UNLESS KEEP=1
Q
;
LOADSMRT ;
;
K ^GPL("SMART")
S GN=$NA(^GPL("SMART",1))
I $$FTG^%ZISH("/home/george/","alex-lewis2.xml",GN,2) W !,"SMART FILE LOADED"
Q
;
SMART ; TRY IT WITH SMART
;
S GN=$NA(^GPL("SMART"))
;K ^TMP("MXMLDOM",$J)
K ^TMP("MXMLERR",$J)
S C0CDOCID=$$PARSE(GN,"SMART")
D DOMO^C0CDOM(C0CDOCID,"/","GNARY","GIDX","GARY",,"//rdf:RDF/")
;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
Q
;
CCR ; TRY IT WITH A CCR
;
S GN=$NA(^GPL("CCR"))
;K ^TMP("MXMLDOM",$J)
K ^TMP("MXMLERR",$J)
S C0CDOCID=$$PARSE(GN,"CCR")
D DOMO^C0CDOM(C0CDOCID,"/","GNARY","GIDX","GARY",,"//ContinuityOfCareRecord/Body/")
;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
Q
;
MED ; TRY IT WITH A CCR MED SECTION
;
S GN=$NA(^GPL("MED"))
K ^TMP("MXMLDOM",$J)
K ^TMP("MXMLERR",$J)
S C0CDOCID=$$PARSE(GN,"MED")
D DOMO^C0CDOM(C0CDOCID,"/","GNARY","GIDX","GARY",,"//Medications/")
;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
Q
;
CCD ; TRY IT WITH A CCD
;
S GN=$NA(^GPL("CCD"))
;K ^TMP("MXMLDOM",$J)
K ^TMP("MXMLERR",$J)
S C0CDOCID=$$PARSE(GN,"CCD")
D DOMO^C0CDOM(C0CDOCID,"/","GNARY","GIDX","GARY",,"//ClinicalDocument/component/structuredBody/")
;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
Q
;
TEST1 ; TEST NHINV OUTPUT IN ^GPL("NIHIN")
; PARSED WITH MXML
; RUN THROUGH XPATH
K GARY,GIDX,C0CDOCID
S GN=$NA(^GPL("NHIN"))
;S GN=$NA(^GPL("DOMI"))
S C0CDOCID=$$PARSE(GN,"GPLTEST")
D DOMO^C0CDOM(C0CDOCID,"/","GNARY","GIDX","GARY",,"/results/")
K ^GPL("GNARY")
M ^GPL("GNARY")=GNARY
Q
;
TEST2 ; PUT GNARY THROUGH DOMI AND STORE XML IN ^GPL("DOMI")
;
S GN=$NA(^GPL("GNARY"))
S C0CDOCID=$$DOMI^C0CDOM(GN,,"results")
D OUTXML^C0CDOM("G",C0CDOCID)
K ^GPL("DOMI")
M ^GPL("DOMI")=G
Q
;
TEST3 ; TEST NHINV OUTPUT IN ^GPL("NIHIN")
; PARSED WITH MXML
; RUN THROUGH XPATH
K GARY,GIDX,C0CDOCID
;S GN=$NA(^GPL("NHIN"))
S GN=$NA(^GPL("DOMI"))
S C0CDOCID=$$PARSE(GN,"GPLTEST")
D DOMO^C0CDOM(C0CDOCID,"/","GNARY","GIDX","GARY",,"/results/")
Q
;
DOMO(ZOID,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; RECURSIVE ROUTINE TO POPULATE
; THE XPATH INDEX ZXIDX, PASSED BY NAME
; THE XPATH ARRAY XPARY, PASSED BY NAME
; ZOID IS THE STARTING OID
; ZPATH IS THE STARTING XPATH, USUALLY "/"
; ZNUM IS THE MULTIPLE NUMBER [x], USUALLY NULL WHEN ON THE TOP NODE
; ZREDUX IS THE XPATH REDUCTION STRING, TAKEN OUT OF EACH XPATH IF PRESENT
I $G(ZREDUX)="" S ZREDUX=""
N NEWPATH,NARY ; NEWPATH IS AN XPATH NARY IS AN NHIN MUMPS ARRAY
N NEWNUM S NEWNUM=""
I $G(ZNUM)>0 S NEWNUM="["_ZNUM_"]"
S NEWPATH=ZPATH_"/"_$$TAG(ZOID)_NEWNUM ; CREATE THE XPATH FOR THIS NODE
I $G(ZREDUX)'="" D ; REDUX PROVIDED?
. N GT S GT=$P(NEWPATH,ZREDUX,2)
. I GT'="" S NEWPATH=GT
S @ZXIDX@(NEWPATH)=ZOID ; ADD THE XPATH FOR THIS NODE TO THE XPATH INDEX
N GA D ATT("GA",ZOID) ; GET ATTRIBUTES FOR THIS NODE
I $D(GA) D ; PROCESS THE ATTRIBUTES
. N ZI S ZI=""
. F S ZI=$O(GA(ZI)) Q:ZI="" D ; FOR EACH ATTRIBUTE
. . N ZP S ZP=NEWPATH_"/"_ZI ; PATH FOR ATTRIBUTE
. . S @ZXPARY@(ZP)=GA(ZI) ; ADD THE ATTRIBUTE XPATH TO THE XP ARRAY
. . I GA(ZI)'="" D ADDNARY(ZP,GA(ZI)) ; ADD THE NHIN ARRAY VALUE
N GD D DATA("GD",ZOID) ; SEE IF THERE IS DATA FOR THIS NODE
I $D(GD(2)) D ;
. M @ZXPARY@(NEWPATH)=GD ; IF MULITPLE DATA MERGE TO THE ARRAY
E I $D(GD(1)) D ;
. S @ZXPARY@(NEWPATH)=GD(1) ; IF SINGLE VALUE, ADD TO ARRAY
. I GD(1)'="" D ADDNARY(NEWPATH,GD(1)) ; ADD TO NHIN ARRAY
N ZFRST S ZFRST=$$FIRST(ZOID) ; SET FIRST CHILD
I ZFRST'=0 D ; THERE IS A CHILD
. N ZNUM
. N ZMULT S ZMULT=$$ISMULT(ZFRST) ; IS FIRST CHILD A MULTIPLE
. D DOMO(ZFRST,NEWPATH,ZNARY,ZXIDX,ZXPARY,$S(ZMULT:1,1:""),ZREDUX) ; THE CHILD
N GNXT S GNXT=$$NXTSIB(ZOID)
I $$TAG(GNXT)'=$$TAG(ZOID) S ZNUM="" ; RESET COUNTING AFTER MULTIPLES
I GNXT'=0 D ;
. N ZMULT S ZMULT=$$ISMULT(GNXT) ; IS THE SIBLING A MULTIPLE?
. I (ZNUM="")&(ZMULT) D ; SIBLING IS FIRST OF MULTIPLES
. . N ZNUM S ZNUM=1 ;
. . D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; DO NEXT SIB
. E D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,$S(ZNUM>0:ZNUM+1,1:""),ZREDUX) ; SIB
Q
;
ADDNARY(ZXP,ZVALUE) ; ADD AN NHIN ARRAY VALUE TO ZNARY
;
N ZZI,ZZJ,ZZN
S ZZI=$P(ZXP,"/",1) ; FIRST PIECE OF XPATH ARRAY
I ZZI="" Q ; DON'T ADD THIS ONE .. PROBABLY THE //results NODE
S ZZJ=$P(ZXP,ZZI_"/",2) ; REST OF XPATH ARRAY
S ZZJ=$TR(ZZJ,"/",".") ; REPLACE / WITH .
I ZZI'["]" D ; A SINGLETON
. S ZZN=1
E D ; THERE IS AN [x] OCCURANCE
. S ZZN=$P($P(ZZI,"[",2),"]",1) ; PULL OUT THE OCCURANCE
. S ZZI=$P(ZZI,"[",1) ; TAKE OUT THE [X]
I ZZJ'="" S @ZNARY@(ZZI,ZZN,ZZJ)=ZVALUE
Q
;
PARSE(INXML,INDOC) ;CALL THE MXML PARSER ON INXML, PASSED BY NAME
; INDOC IS PASSED AS THE DOCUMENT NAME - DON'T KNOW WHERE TO STORE THIS NOW
; EXTRINSIC WHICH RETURNS THE DOCID ASSIGNED BY MXML
;Q $$EN^MXMLDOM(INXML)
Q $$EN^MXMLDOM(INXML,"W")
;
ISMULT(ZOID) ; RETURN TRUE IF ZOID IS ONE OF A MULTIPLE
N ZN
;I $$TAG(ZOID)["entry" B
S ZN=$$NXTSIB(ZOID)
I ZN'="" Q $$TAG(ZOID)=$$TAG(ZN) ; IF TAG IS THE SAME AS NEXT SIB TAG
Q 0
;
FIRST(ZOID) ;RETURNS THE OID OF THE FIRST CHILD OF ZOID
Q $$CHILD^MXMLDOM(C0CDOCID,ZOID)
;
PARENT(ZOID) ;RETURNS THE OID OF THE PARENT OF ZOID
Q $$PARENT^MXMLDOM(C0CDOCID,ZOID)
;
ATT(RTN,NODE) ;GET ATTRIBUTES FOR ZOID
S HANDLE=C0CDOCID
K @RTN
D GETTXT^MXMLDOM("A")
Q
;
TAG(ZOID) ; RETURNS THE XML TAG FOR THE NODE
;I ZOID=149 B ;GPLTEST
N X,Y
S Y=""
S X=$G(C0CCBK("TAG")) ;IS THERE A CALLBACK FOR THIS ROUTINE
I X'="" X X ; EXECUTE THE CALLBACK, SHOULD SET Y
I Y="" S Y=$$NAME^MXMLDOM(C0CDOCID,ZOID)
Q Y
;
NXTSIB(ZOID) ; RETURNS THE NEXT SIBLING
Q $$SIBLING^MXMLDOM(C0CDOCID,ZOID)
;
DATA(ZT,ZOID) ; RETURNS DATA FOR THE NODE
;N ZT,ZN S ZT=""
;S C0CDOM=$NA(^TMP("MXMLDOM",$J,C0CDOCID))
;Q $G(@C0CDOM@(ZOID,"T",1))
S ZN=$$TEXT^MXMLDOM(C0CDOCID,ZOID,ZT)
Q
;
OUTXML(ZRTN,INID) ; USES C0CMXMLB (MXMLBLD) TO OUTPUT XML FROM AN MXMLDOM
;
S C0CDOCID=INID
D START^C0CMXMLB($$TAG(1),,"G")
D NDOUT($$FIRST(1))
D END^C0CMXMLB ;END THE DOCUMENT
M @ZRTN=^TMP("MXMLBLD",$J)
K ^TMP("MXMLBLD",$J)
Q
;
NDOUT(ZOID) ;CALLBACK ROUTINE - IT IS RECURSIVE
N ZI S ZI=$$FIRST(ZOID)
I ZI'=0 D ; THERE IS A CHILD
. N ZATT D ATT("ZATT",ZOID) ; THESE ARE THE ATTRIBUTES MOVED TO ZATT
. D MULTI^C0CMXMLB("",$$TAG(ZOID),.ZATT,"NDOUT^C0CMXML(ZI)") ;HAVE CHILDREN
E D ; NO CHILD - IF NO CHILDREN, A NODE HAS DATA, IS AN ENDPOINT
. ;W "DOING",ZOID,!
. N ZD D DATA("ZD",ZOID) ;NODES WITHOUT CHILDREN HAVE DATA
. N ZATT D ATT("ZATT",ZOID) ;ATTRIBUTES
. D ITEM^C0CMXMLB("",$$TAG(ZOID),.ZATT,$G(ZD(1))) ;NO CHILDREN
I $$NXTSIB(ZOID)'=0 D ; THERE IS A SIBLING
. D NDOUT($$NXTSIB(ZOID)) ;RECURSE FOR SIBLINGS
Q
;
WNHIN(ZDFN) ; WRITES THE XML OUTPUT OF GET^NHINV TO AN XML FILE
;
N GN,GN2
D GET^NHINV(.GN,ZDFN) ; EXTRACT THE XML
S GN2=$NA(@GN@(1))
W $$OUTPUT^C0CXPATH(GN2,"nhin_"_ZDFN_".xml","/home/wvehr3-09/")
Q
;
TESTNARY ; TEST MAKING A NHIN ARRAY
N ZI S ZI=""
N ZH ; DOM HANDLE
D TEST1 ; PARSE AN NHIN RESULT INTO THE DOM
S ZH=C0CDOCID ; SET THE HANDLE
N ZD S ZD=$NA(^TMP("MXMLDOM",$J,ZH))
F S ZI=$O(@ZD@(ZI)) Q:ZI="" D ; FOR EACH NODE
. N ZATT
. D MNARY(.ZATT,ZH,ZI)
. N ZPRE,ZN
. S ZPRE=$$PRE(ZI)
. S ZN=$P(ZPRE,",",2)
. S ZPRE=$P(ZPRE,",",1)
. ;I $D(ZATT) ZWR ZATT
. N ZJ S ZJ=""
. F S ZJ=$O(ZATT(ZJ)) Q:ZJ="" D ; FOR EACH ATTRIBUTE
. . W ZPRE_"["_ZN_"]"_$$TAG(ZI)_"."_ZJ_"="_ZATT(ZJ),!
. . S GOUT(ZPRE,ZN,$$TAG(ZI)_"."_ZJ)=ZATT(ZJ)
Q
;
PRE(ZNODE) ; EXTRINSIC WHICH RETURNS THE PREFIX FOR A NODE
;
N GI,GI2,GPT,GJ,GN
S GI=$$PARENT(ZNODE) ; PARENT NODE
I GI=0 Q "" ; NO PARENT
S GPT=$$TAG(GI) ; TAG OF PARENT
S GI2=$$PARENT(GI) ; PARENT OF PARENT
I (GI2'=0)&($$TAG(GI2)'="results") S GPT=$$TAG(GI2)_"."_GPT
S GJ=$$FIRST(GI) ; NODE OF FIRST SIB
I GJ=ZNODE Q:$$TAG(GI)_",1"
F GN=2:1 Q:GJ=ZNODE D ;
. S GJ=$$NXTSIB(GJ) ; NEXT SIBLING
Q GPT_","_GN
;
MNARY(ZRTN,ZHANDLE,ZOID) ; MAKE A NHIN ARRAY FROM A DOM NODE
; RETURNED IN ZRTN, PASSED BY REFERENCE
; ZHANDLE IS THE DOM DOCUMENT ID
; ZOID IS THE DOM NODE
D ATT("ZRTN",ZOID)
Q
;