VistA-ccr/p/C0CCCR.m

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Mathematica

C0CCCR ; CCDCCR/GPL - CCR MAIN PROCESSING; 6/6/08
;;1.0;C0C;;May 19, 2009;
;Copyright 2008,2009 George Lilly, University of Minnesota.
;Licensed under the terms of the GNU General Public License.
;See attached copy of the License.
;
;This program is free software; you can redistribute it and/or modify
;it under the terms of the GNU General Public License as published by
;the Free Software Foundation; either version 2 of the License, or
;(at your option) any later version.
;
;This program is distributed in the hope that it will be useful,
;but WITHOUT ANY WARRANTY; without even the implied warranty of
;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;GNU General Public License for more details.
;
;You should have received a copy of the GNU General Public License along
;with this program; if not, write to the Free Software Foundation, Inc.,
;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
;
; EXPORT A CCR
;
EXPORT ; EXPORT ENTRY POINT FOR CCR
; Select a patient.
S DIC=2,DIC(0)="AEMQ" D ^DIC
I Y<1 Q ; EXIT
S DFN=$P(Y,U,1) ; SET THE PATIENT
D XPAT(DFN) ; EXPORT TO A FILE
Q
;
XPAT(DFN,XPARMS,DIR,FN) ; EXPORT ONE PATIENT TO A FILE
; DIR IS THE DIRECTORY, DEFAULTS IF NULL TO ^TMP("C0CCCR","ODIR")
; FN IS FILE NAME, DEFAULTS IF NULL
N CCRGLO,UDIR,UFN
I '$D(DIR) S UDIR=""
E S UDIR=DIR
I '$D(FN) S UFN="" ; IF FILENAME IS NOT PASSED
E S UFN=FN
I '$D(XPARMS) S XPARMS=""
D CCRRPC(.CCRGLO,DFN,XPARMS,"CCR")
S OARY=$NA(^TMP("C0CCCR",$J,DFN,"CCR",1))
S ONAM=UFN
I UFN="" S ONAM="PAT_"_DFN_"_CCR_V1_0_0.xml"
S ODIRGLB=$NA(^TMP("C0CCCR","ODIR"))
S ^TMP("C0CCCR","FNAME",DFN)=ONAM ; FILE NAME FOR BATCH USE
I $D(^TMP("GPLCCR","ODIR")) S @ODIRGLB=^TMP("GPLCCR","ODIR")
I '$D(@ODIRGLB) D ; IF NOT ODIR HAS BEEN SET
. W "Warning.. please set ^TMP(""C0CCCR"",""ODIR"")=""output path""",! Q
. ;S @ODIRGLB="/home/glilly/CCROUT"
. ;S @ODIRGLB="/home/cedwards/"
. S @ODIRGLB="/opt/wv/p/"
S ODIR=UDIR
I UDIR="" S ODIR=@ODIRGLB
N ZY
S ZY=$$OUTPUT^C0CXPATH(OARY,ONAM,ODIR)
W !,$P(ZY,U,2),!
Q
;
DCCR(DFN) ; DISPLAY A CCR THAT HAS JUST BEEN EXTRACTED
;
N G1
S G1=$NA(^TMP("C0CCCR",$J,DFN,"CCR"))
I $D(@G1@(0)) D ; CCR EXISTS
. D PARY^C0CXPATH(G1)
E W "CCR NOT CREATED, RUN D XPAT^C0CCCR(DFN,"""","""") FIRST",!
Q
;
CCRRPC(CCRGRTN,DFN,CCRPARMS,CCRPART) ;RPC ENTRY POINT FOR CCR OUTPUT
; CCRGRTN IS RETURN ARRAY PASSED BY NAME
; DFN IS PATIENT IEN
; CCRPART IS "CCR" FOR ENTIRE CCR, OR SECTION NAME FOR A PART
; OF THE CCR BODY.. PARTS INCLUDE "PROBLEMS" "VITALS" ETC
; CCRPARMS ARE PARAMETERS THAT AFFECT THE EXTRACTION
; IN THE FORM "PARM1:VALUE1^PARM2:VALUE2"
; EXAMPLE: "LABLIMIT:T-60" TO LIMIT LAB EXTRACTION TO THE LAST 60 DAYS
; SEE C0CPARMS FOR A COMPLETE LIST OF SUPPORTED PARAMETERS
I '$D(DEBUG) S DEBUG=0
S CCD=0 ; NEED THIS FLAG TO DISTINGUISH FROM CCD
D SET^C0CPARMS(CCRPARMS) ;SET PARAMETERS WITH CCRPARMS AS OVERRIDES
I '$D(TESTLAB) S TESTLAB=0 ; FLAG FOR TESTING RESULTS SECTION
I '$D(TESTALERT) S TESTALERT=1 ; FLAG FOR TESTING ALERTS SECTION
I '$D(TESTMEDS) S TESTMEDS=0 ; FLAG FOR TESTING C0CMED SECTION
S TGLOBAL=$NA(^TMP("C0CCCR",$J,"TEMPLATE")) ; GLOBAL FOR STORING TEMPLATE
S CCRGLO=$NA(^TMP("C0CCCR",$J,DFN,"CCR")) ; GLOBAL FOR BUILDING THE CCR
S ACTGLO=$NA(^TMP("C0CCCR",$J,DFN,"ACTORS")) ; GLOBAL FOR ALL ACTORS
; TO GET PART OF THE CCR RETURNED, PASS CCRPART="PROBLEMS" ETC
S CCRGRTN=$NA(^TMP("C0CCCR",$J,DFN,CCRPART)) ; RTN GLO NM OF PART OR ALL
D LOAD^C0CCCR0(TGLOBAL) ; LOAD THE CCR TEMPLATE
D CP^C0CXPATH(TGLOBAL,CCRGLO) ; COPY THE TEMPLATE TO CCR GLOBAL
;
; DELETE THE BODY, ACTORS AND SIGNATURES SECTIONS FROM GLOBAL
; THESE WILL BE POPULATED AFTER CALLS TO THE XPATH ROUTINES
D REPLACE^C0CXPATH(CCRGLO,"","//ContinuityOfCareRecord/Body")
D REPLACE^C0CXPATH(CCRGLO,"","//ContinuityOfCareRecord/Actors")
D REPLACE^C0CXPATH(CCRGLO,"","//ContinuityOfCareRecord/Signatures")
I DEBUG F I=1:1:@CCRGLO@(0) W @CCRGLO@(I),!
;
D HDRMAP(CCRGLO,DFN) ; MAP HEADER VARIABLES
;
K ^TMP("C0CCCR",$J,"CCRSTEP") ; KILL GLOBAL PRIOR TO ADDING TO IT
S CCRXTAB=$NA(^TMP("C0CCCR",$J,"CCRSTEP")) ; GLOBAL TO STORE CCR STEPS
D INITSTPS(CCRXTAB) ; INITIALIZED CCR PROCESSING STEPS
N PROCI,XI,TAG,RTN,CALL,XPATH,IXML,OXML,INXML,CCRBLD
F PROCI=1:1:@CCRXTAB@(0) D ; PROCESS THE CCR BODY SECTIONS
. S XI=@CCRXTAB@(PROCI) ; CALL COPONENTS TO PARSE
. S RTN=$P(XI,";",2) ; NAME OF ROUTINE TO CALL
. S TAG=$P(XI,";",1) ; LABEL INSIDE ROUTINE TO CALL
. S XPATH=$P(XI,";",3) ; XPATH TO XML TO PASS TO ROUTINE
. D QUERY^C0CXPATH(TGLOBAL,XPATH,"INXML") ; EXTRACT XML TO PASS
. S IXML="INXML"
. S OXML=$P(XI,";",4) ; ARRAY FOR SECTION VALUES
. ; K @OXML ; KILL EXPECTED OUTPUT ARRAY
. ; W OXML,!
. S CALL="D "_TAG_"^"_RTN_"(IXML,DFN,OXML)" ; SETUP THE CALL
. W "RUNNING ",CALL,!
. X CALL
. ; NOW INSERT THE RESULTS IN THE CCR BUFFER
. I @OXML@(0)'=0 D ; THERE IS A RESULT
. . D INSERT^C0CXPATH(CCRGLO,OXML,"//ContinuityOfCareRecord/Body")
. . I DEBUG F C0CI=1:1:@OXML@(0) W @OXML@(C0CI),!
N ACTT,ATMP,ACTT2,ATMP2 ; TEMPORARY ARRAY SYMBOLS FOR ACTOR PROCESSING
D ACTLST^C0CCCR(CCRGLO,ACTGLO) ; GEN THE ACTOR LIST
D QUERY^C0CXPATH(TGLOBAL,"//ContinuityOfCareRecord/Actors","ACTT")
D EXTRACT^C0CACTOR("ACTT",ACTGLO,"ACTT2")
D INSINNER^C0CXPATH(CCRGLO,"ACTT2","//ContinuityOfCareRecord/Actors")
N TRIMI,J,DONE S DONE=0
F TRIMI=0:0 D Q:DONE ; DELETE UNTIL ALL EMPTY ELEMENTS ARE GONE
. S J=$$TRIM^C0CXPATH(CCRGLO) ; DELETE EMPTY ELEMENTS
. I DEBUG W "TRIMMED",J,!
. I J=0 S DONE=1 ; DONE WHEN TRIM RETURNS FALSE
Q
;
INITSTPS(TAB) ; INITIALIZE CCR PROCESSING STEPS
; TAB IS PASSED BY NAME
I DEBUG W "TAB= ",TAB,!
; ORDER FOR CCR IS PROBLEMS,FAMILYHISTORY,SOCIALHISTORY,MEDICATIONS,VITALSIGNS,RESULTS,HEALTHCAREPROVIDERS
D PUSH^C0CXPATH(TAB,"EXTRACT;C0CPROBS;//ContinuityOfCareRecord/Body/Problems;^TMP(""C0CCCR"",$J,DFN,""PROBLEMS"")")
D PUSH^C0CXPATH(TAB,"EXTRACT;C0CMED;//ContinuityOfCareRecord/Body/Medications;^TMP(""C0CCCR"",$J,DFN,""MEDICATIONS"")")
D PUSH^C0CXPATH(TAB,"EXTRACT;C0CVITAL;//ContinuityOfCareRecord/Body/VitalSigns;^TMP(""C0CCCR"",$J,DFN,""VITALS"")")
D PUSH^C0CXPATH(TAB,"MAP;C0CLABS;//ContinuityOfCareRecord/Body/Results;^TMP(""C0CCCR"",$J,DFN,""RESULTS"")")
D PUSH^C0CXPATH(TAB,"MAP;C0CIMMU;//ContinuityOfCareRecord/Body/Immunizations;^TMP(""C0CCCR"",$J,DFN,""IMMUNE"")")
I TESTALERT D PUSH^C0CXPATH(TAB,"EXTRACT;C0CALERT;//ContinuityOfCareRecord/Body/Alerts;^TMP(""C0CCCR"",$J,DFN,""ALERTS"")")
Q
;
HDRMAP(CXML,DFN) ; MAP HEADER VARIABLES: FROM, TO ECT
N VMAP S VMAP=$NA(^TMP("C0CCCR",$J,DFN,"HEADER"))
; K @VMAP
S @VMAP@("DATETIME")=$$FMDTOUTC^C0CUTIL($$NOW^XLFDT,"DT")
; I IHDR="" D ; HEADER ARRAY IS NOT PROVIDED, USE DEFAULTS
D ; ALWAYS MAP THESE VARIABLES
. S @VMAP@("ACTORPATIENT")="ACTORPATIENT_"_DFN
. S @VMAP@("ACTORFROM")="ACTORORGANIZATION_"_DUZ ; FROM DUZ - ???
. S @VMAP@("ACTORFROM2")="ACTORSYSTEM_1" ; SECOND FROM IS THE SYSTEM
. S @VMAP@("ACTORTO")="ACTORPATIENT_"_DFN ; FOR TEST PURPOSES
. S @VMAP@("PURPOSEDESCRIPTION")="CEND PHR" ; FOR TEST PURPOSES
. S @VMAP@("ACTORTOTEXT")="Patient" ; FOR TEST PURPOSES
. ; THIS IS THE USE CASE FOR THE PHR WHERE "TO" IS THE PATIENT
;I IHDR'="" D ; HEADER VALUES ARE PROVIDED
;. D CP^C0CXPATH(IHDR,VMAP) ; COPY HEADER VARIABLES TO MAP ARRAY
N CTMP
D MAP^C0CXPATH(CXML,VMAP,"CTMP")
D CP^C0CXPATH("CTMP",CXML)
N HRIMVARS ;
S HRIMVARS=$NA(^TMP("C0CRIM","VARS",DFN,"HEADER")) ; TO PERSIST VARS
M @HRIMVARS@(1)=@VMAP ; PERSIST THE HEADER VARIABLES IN RIM TABLE
S @HRIMVARS@(0)=1 ; ONLY ONE SET OF HEADERS PER PATIENT
Q
;
ACTLST(AXML,ACTRTN) ; RETURN THE ACTOR LIST FOR THE XML IN AXML
; AXML AND ACTRTN ARE PASSED BY NAME
; EACH ACTOR RECORD HAS 3 PARTS - IE IF OBJECTID=ACTORPATIENT_2
; P1= OBJECTID - ACTORPATIENT_2
; P2= OBJECT TYPE - PATIENT OR PROVIDER OR SOFTWARE
;OR INSTITUTION
; OR PERSON(IN PATIENT FILE IE NOK)
; P3= IEN RECORD NUMBER FOR ACTOR - 2
N I,J,K,L
K @ACTRTN ; CLEAR RETURN ARRAY
F I=1:1:@AXML@(0) D ; SCAN ALL LINES
. I @AXML@(I)?.E1"<ActorID>".E D ; THERE IS AN ACTOR THIS LINE
. . S J=$P($P(@AXML@(I),"<ActorID>",2),"</ActorID>",1)
. . I DEBUG W "<ActorID>=>",J,!
. . I J'="" S K(J)="" ; HASHING ACTOR
. . ; TO GET RID OF DUPLICATES
S I="" ; GOING TO $O THROUGH THE HASH
F J=0:0 D Q:$O(K(I))=""
. S I=$O(K(I)) ; WALK THROUGH THE HASH OF ACTORS
. S $P(L,U,1)=I ; FIRST PIECE IS THE OBJECT ID
. S $P(L,U,2)=$P($P(I,"ACTOR",2),"_",1) ; ACTOR TYPE
. S $P(L,U,3)=$P(I,"_",2) ; IEN RECORD NUMBER FOR ACTOR
. D PUSH^C0CXPATH(ACTRTN,L) ; ADD THE ACTOR TO THE RETURN ARRAY
Q
;
TEST ; RUN ALL THE TEST CASES
D TESTALL^C0CUNIT("C0CCCR")
Q
;
ZTEST(WHICH) ; RUN ONE SET OF TESTS
N ZTMP
D ZLOAD^C0CUNIT("ZTMP","C0CCCR")
D ZTEST^C0CUNIT(.ZTMP,WHICH)
Q
;
TLIST ; LIST THE TESTS
N ZTMP
D ZLOAD^C0CUNIT("ZTMP","C0CCCR")
D TLIST^C0CUNIT(.ZTMP)
Q
;
;;><TEST>
;;><PROBLEMS>
;;>>>K C0C S C0C=""
;;>>>D CCRRPC^C0CCCR(.C0C,"2","PROBLEMS","")
;;>>?@C0C@(@C0C@(0))["</Problems>"
;;><VITALS>
;;>>>K C0C S C0C=""
;;>>>D CCRRPC^C0CCCR(.C0C,"2","VITALS","")
;;>>?@C0C@(@C0C@(0))["</VitalSigns>"
;;><CCR>
;;>>>K C0C S C0C=""
;;>>>D CCRRPC^C0CCCR(.C0C,"2","CCR","")
;;>>?@C0C@(@C0C@(0))["</ContinuityOfCareRecord>"
;;><ACTLST>
;;>>>K C0C S C0C=""
;;>>>D CCRRPC^C0CCCR(.C0C,"2","CCR","")
;;>>>D ACTLST^C0CCCR(C0C,"ACTTEST")
;;><ACTORS>
;;>>>D ZTEST^C0CCCR("ACTLST")
;;>>>D QUERY^C0CXPATH(TGLOBAL,"//ContinuityOfCareRecord/Actors","G2")
;;>>>D EXTRACT^C0CACTOR("G2","ACTTEST","G3")
;;>>?G3(G3(0))["</Actors>"
;;><TRIM>
;;>>>D ZTEST^C0CCCR("CCR")
;;>>>W $$TRIM^C0CXPATH(CCRGLO)
;;><ALERTS>
;;>>>S TESTALERT=1
;;>>>K C0C S C0C=""
;;>>>D CCRRPC^C0CCCR(.C0C,"2","ALERTS","")
;;>>?@C0C@(@C0C@(0))["</Alerts>"