206 lines
8.0 KiB
Mathematica
206 lines
8.0 KiB
Mathematica
C0CDIC ; CCDCCR/GPL - CCR Dictionary utilities; 6/1/08
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;;1.2;CCD/CCR GENERATION UTILITIES;;Oct 30, 2012;Build 50
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;Copyright 2008 WorldVistA.
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;
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; This program is free software: you can redistribute it and/or modify
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; it under the terms of the GNU Affero General Public License as
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; published by the Free Software Foundation, either version 3 of the
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; License, or (at your option) any later version.
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;
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; This program is distributed in the hope that it will be useful,
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; but WITHOUT ANY WARRANTY; without even the implied warranty of
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; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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; GNU Affero General Public License for more details.
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;
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; You should have received a copy of the GNU Affero General Public License
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; along with this program. If not, see <http://www.gnu.org/licenses/>.
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;
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W "This is the CCR Dictionary Utility Library ",!
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W !
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Q
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;
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DIC2CSV ;OUTPUT THE CCR DICTIONARY TO A CSV FILE
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;
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N ZI
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S ZI=""
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S G1=$NA(^TMP($J,"C0CCSV",1))
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S G1A=$NA(@G1@("V"))
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S G2=$NA(^TMP($J,"C0CCSV",2))
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D GETN2^C0CRNF(G1,170) ; GET THE MATRIX
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F S ZI=$O(@G1A@(ZI)) Q:ZI="" D ;FOR EACH ROW IN THE MATRIX
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. I $G(@G1A@(ZI,"MAPPING METHOD",1))'="" D ;
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. . W @G1A@(ZI,"MAPPING METHOD",1),!
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. . ;K @G1A@(ZI,"MAPPING METHOD")
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. ;W !,ZI,$G(@G1A@(ZI,"MAPPING METHOD",1))
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D RNF2CSV^C0CRNF(G2,G1,"VN") ; PREPARE THE CVS FILE
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K @G1
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D FILEOUT^C0CRNF(G2,"FILE_"_170_".csv")
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K @G2
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Q
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;
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GVARS(C0CVARS,C0CT) ; Get the CCR variables from the CCR template
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; and return them in C0CVARS, which is passed by name
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; FIRST PIECE OF C0CVARS(x) IS THE VARIABLE NAME, SECOND PIECE
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; IS THE LINE NUMBER OF THE VARIABLE IN THE TEMPLATE
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; C0CT IS RETURNED AS THE CCR TEMPLATE
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N C0CTVARS ; ARRAY FOR THE TEMPLATE AND ARRAY FOR THE VARS
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D LOAD^GPLCCR0(C0CT) ; LOAD THE CCR TEMPLATE
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D XVARS^GPLXPATH("C0CTVARS",C0CT) ; PULL OUT THE VARS
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N C0CI,C0CX
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S @C0CVARS@(0)=C0CTVARS(0) ; SAME COUNT
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F C0CI=1:1:C0CTVARS(0) D ; FOR EVERY LINE IN THE ARRAY
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. S C0CX=C0CTVARS(C0CI) ; THE VARIABLE - 3 PIECES, FIRST ONE NULL
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. S @C0CVARS@(C0CI)=$P(C0CX,"^",2)_"^"_$P(C0CX,"^",3) ; VAR NAME^LINE NUMBER
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;D PARY^GPLXPATH("C0CVARS")
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Q
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;
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GXPATH(C0CPVARS,C0CPT) ; LOAD THE CCR TEMPLATE INTO C0CPT, PULL OUT VARIABLES
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; AND THE XPATH TO THE VARIABLES INTO C0CPVARS
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; BY INDEXING THE TEMPLATE C0CT AND MATCHING THE XPATH TO THE VARIABLE
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; BOTH ARE PASSED BY NAME
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; C0CPVARS(x) IS VAR^LINENUM^XPATH SORTED BY LINENUM
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; C0CPVARS(0) IS NUMBER OF VARIABLES
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; C0CPT(0) IS NUMBER OF LINES IN THE TEMPLATE
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D GVARS(C0CPVARS,C0CPT) ; GET THE VARIABLES AND LINE NUMBERS
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;N C0CTVARS ; HASH TABLE FOR VARIABLE BY LINE NUMBER
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D HASHV ; PUT THE VARIABLES IN A LINE NUMBER HASH FOR MATCHING TO XPATHS
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; NOW GO GET THE XPATH INDEXES
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D INDEX^GPLXPATH(C0CPT) ; ADD THE XPATH INDEXES TO THE TEMPLATE ARRAY
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S C0CI="" ; GOING TO LOOP THROUGH THE WHOLE ARRAY LOOKING AT XPATHS
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F S C0CI=$O(@C0CPT@(C0CI)) Q:C0CI="" D ; VISIT EVERY LINE
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. I +C0CI'=0 Q ; SKIP EVERYTHING BUT THE XPATH INDEX
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. I C0CI=0 Q ; SKIP THE ZERO NODE
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. S C0CX=@C0CPT@(C0CI) ; PULL OUT THE LINE NUMBERS X^Y
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. S C0CY=$P(C0CX,"^",1) ; STARTING LINE NUMBER
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. S C0CZ=$P(C0CX,"^",2) ; ENDING LINE NUMBER
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. I C0CY=C0CZ D ; THIS IS AN XPATH END NODE, HAS A VARIABLE (WE HOPE)
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. . ; W "FOUND ",C0CI,!
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. . I $D(C0CTVARS(C0CY)) D ; IF THERE IS A VARIABLE THERE
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. . . S $P(C0CTVARS(C0CY),"^",3)=C0CI ; INSERT THE XPATH FOR THE VAR
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D SORTV ; SORT THE ARRAY BY LINE NUMBER
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Q
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;
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HASHV ; INTERNAL ROUTINE TO PUT VARIABLE NAMES IN A LINE NUMBER HASH
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;N C0CI,C0CTVARS,C0CX,C0CY
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F C0CI=1:1:@C0CPVARS@(0) D ; FOR THE ENTIRE ARRAY
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. S C0CX=$P(@C0CPVARS@(C0CI),"^",2) ; LINE NUMBER
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. S C0CY=$P(@C0CPVARS@(C0CI),"^",1) ; VARIABLE NAME
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. S C0CTVARS(C0CX)=C0CY ; BUILD HASH OF VARIABLES BY LINE NUMBER
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Q
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;
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SORTV ; INTERNAL ROUTINE TO OUTPUT VARIABLES (AND XPATHS) IN LINE NUMBER ORDER
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;N C0CV2 ; SCRACTH SPACE FOR BUILDING SORTED ARRAY
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S C0CI="" ;
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F S C0CI=$O(C0CTVARS(C0CI)) Q:C0CI="" D ; BY LINE NUMBER
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. S C0CX=C0CTVARS(C0CI) ;VARIABLE NAME
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. S $P(C0CX,"^",2)=C0CI ; LINE NUMBER IS SECOND PIECE
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. D PUSH^GPLXPATH("C0C2",C0CX) ; PUT ONTO ARRAY
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K @C0CPVARS
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M @C0CPVARS=C0C2
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Q
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;
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LOAD ; LOAD VARIABLE NAMES AND XPATH IN ^C0CDIC(170
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; INITIAL LOAD OF THE CCR DICTIONARY
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;
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N C0CDIC,C0CARY,C0CXML,C0CFDA,C0CI
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S C0CDIC="^C0CDIC(170," ; ROOT OF THE CCR DICTIONARY
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D GXPATH("C0CARY","C0CXML") ; FETCH THE VARIABLES AND XPATH INTO C0CARY
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; C0CXML WILL CONTAIN THE TEMPLATE - NOT NEEDED FOR LOAD
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D PARY^GPLXPATH("C0CARY") ;TEST
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F C0CI=1:1:C0CARY(0) D ; LOAD EACH VARIABLE
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. S C0CFDA(170,"+"_C0CI_",",.01)=$P(C0CARY(C0CI),"^",1) ; VAR NAME
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. S C0CFDA(170,"+"_C0CI_",",2)=$P(C0CARY(C0CI),"^",3) ; XPATH
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. D UPDATE^DIE("","C0CFDA")
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. I $D(^TMP("DIERR",$J)) U $P BREAK
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. W "LOADING:",C0CI," ",C0CARY(C0CI),!
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Q
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;
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INIT ; INITIALIZE CCR DICTIONARY BASED ON VARIABLE NAMES
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;
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; CHEAT SHEET FOR VARIABLE NAMES IN ^C0CDIC(170.xx,
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; THIS IS WHAT WILL BE IN C0CA FOR EACH DICTIONARY ENTRY
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;G1("CODING")="170^8"
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;G1("DATA ELEMENT")="170^7"
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;G1("DESCRIPTION")="170^3"
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;G1("ID")="170^1"
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;G1("M","170^8","CODING")="170.08^.01"
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;G1("MAPPING METHOD")="170.08^1"
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;G1("SECTION")="170^10"
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;G1("SOURCE")="170^4"
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;G1("STATUS")="170^9"
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;G1("TYPE")="170^6"
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;G1("VARIABLE")="170^.01"
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;G1("XPATH")="170^2"
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;
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N C0CZA,C0CZX,C0CN,C0CSTAT
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S C0CZX=0
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S C0CSTAT=0 ; INIT STATUS SET FLAG
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F S C0CZX=$O(^C0CDIC(170,C0CZX)) Q:+C0CZX=0 D ; FOR EACH DICT ENTRY
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. ;W C0CZX,!
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. K C0CA,C0CN ; CLEAR OUT THE LAST ONE
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. D GETN1^C0CRNF("C0CA",170,C0CZX,"","ALL") ; GET VARIABLE HASH
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. ;ZWR C0CA B ;
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. S C0CN=$$ZVALUE("VARIABLE") ;NAME OF THE VARIABLE
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. W "VARIABLE: ",C0CN,!
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. I $E(C0CN,1,5)="ACTOR" D SETFDA("SECTION","ACTORS") ;
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. I $E(C0CN,1,6)="SOCIAL" D ;
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. . D SETFDA("SECTION","SOC") ;
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. . D SETFDA("STATUS","X") ;SOCIAL HISTORY NOT IMPLEMENTED
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. . S C0CSTAT=1
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. I $E(C0CN,1,6)="FAMILY" D ;
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. . D SETFDA("SECTION","FAM") ;
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. . D SETFDA("STATUS","X") ;FAMILY HISTORY NOT IMPLEMENTED
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. . S C0CSTAT=1
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. ;D SETFDA("TYPE","") ;CORRECT FOR TYPE ERRORS
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. I $E(C0CN,1,5)="ALERT" D SETFDA("SECTION","ALERTS")
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. I $E(C0CN,1,5)="VITAL" D SETFDA("SECTION","VITALS")
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. I $E(C0CN,1,7)="PROBLEM" D SETFDA("SECTION","PROBLEMS")
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. I $E(C0CN,1,10)="RESULTTEST" D SETFDA("SECTION","TEST")
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. E I $E(C0CN,1,6)="RESULT" D SETFDA("SECTION","LABS")
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. I C0CN["CODEVALUE" D SETFDA("TYPE","CD") ;CODES
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. I C0CN["CODEVERSION" D SETFDA("TYPE","CV") ; CODE VERSION
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. I C0CN["CODINGSYSTEM" D SETFDA("TYPE","CS") ;CODING SYSTEM
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. I $$ZVALUE("STATUS")=""!'C0CSTAT D SETFDA("STATUS","N") ;BLANK STATUS TO N
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. I $$ZVALUE("XPATH")["/Medication/Directions/" D ; MEDS DIRECTIONS VAR
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. . D SETFDA("SECTION","DIR") ; SPECIAL SECTION FOR DIRECTIONS
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. E I $$ZVALUE("XPATH")["/Medications/Medication/" D ; ALL OTHER MEDS
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. . D SETFDA("SECTION","MEDS") ; A MEDS VAR
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. I $E(C0CN,($L(C0CN)-1),$L(C0CN))="ID" D SETFDA("TYPE","ID") ;CATCH THE IDS
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. I C0CN["DATETIME" D SETFDA("TYPE","DT") ; DATE/TIME VARIABLE
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. W "VARIABLE: ",C0CZX," ",C0CA("VARIABLE"),!
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. ;ZWR C0CFDA
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. I $D(C0CFDA) D ; WE HAVE CHANGES ON THIS VARIABLE
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. . ;ZWR C0CFDA
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. . D UPDATE^DIE("","C0CFDA(C0CZX)")
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. . I $D(^TMP("DIERR",$J)) U $P BREAK
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. . D CLEAN^DILF ; CLEAN UP
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. ;ZWR C0CFDA
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Q
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;
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SETFDA(C0CSN,C0CSV) ; INTERNAL ROUTINE TO MAKE AN FDA ENTRY FOR FIELD C0CSN
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; TO SET TO VALUE C0CSV.
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; C0CFDA,C0CA,C0CZX ARE ASSUMED FROM THE CALLING ROUTINE
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; C0CSN,C0CSV ARE PASSED BY VALUE
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;
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N C0CSI,C0CSJ
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S C0CSI=$$ZFILE(C0CSN,"C0CA") ; FILE NUMBER
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S C0CSJ=$$ZFIELD(C0CSN,"C0CA") ; FIELD NUMBER
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S C0CFDA(C0CZX,C0CSI,C0CZX_",",C0CSJ)=C0CSV
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Q
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ZFILE(ZFN,ZTAB) ; EXTRINSIC TO RETURN FILE NUMBER FOR FIELD NAME PASSED
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; BY VALUE IN ZFN. FILE NUMBER IS PIECE 1 OF C0CA(ZFN)
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; IF ZTAB IS NULL, IT DEFAULTS TO C0CA
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I '$D(ZTAB) S ZTAB="C0CA"
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Q $P(@ZTAB@(ZFN),"^",1)
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ZFIELD(ZFN,ZTAB) ;EXTRINSIC TO RETURN FIELD NUMBER FOR FIELD NAME PASSED
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; BY VALUE IN ZFN. FILE NUMBER IS PIECE 2 OF C0CA(ZFN)
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; IF ZTAB IS NULL, IT DEFAULTS TO C0CA
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I '$D(ZTAB) S ZTAB="C0CA"
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Q $P(@ZTAB@(ZFN),"^",2)
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ZVALUE(ZFN,ZTAB) ;EXTRINSIC TO RETURN VALUE FOR FIELD NAME PASSED
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; BY VALUE IN ZFN. FILE NUMBER IS PIECE 3 OF C0CA(ZFN)
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; IF ZTAB IS NULL, IT DEFAULTS TO C0CA
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I '$D(ZTAB) S ZTAB="C0CA"
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Q $P(@ZTAB@(ZFN),"^",3)
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;
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