291 lines
9.6 KiB
Mathematica
291 lines
9.6 KiB
Mathematica
C0CMCCD ; GPL - MXML based CCD utilities;12/04/09 17:05
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;;0.1;C0C;nopatch;noreleasedate
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;Copyright 2009 George Lilly. Licensed under the terms of the GNU
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;General Public License See attached copy of the License.
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;
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;This program is free software; you can redistribute it and/or modify
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;it under the terms of the GNU General Public License as published by
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;the Free Software Foundation; either version 2 of the License, or
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;(at your option) any later version.
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;
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;This program is distributed in the hope that it will be useful,
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;but WITHOUT ANY WARRANTY; without even the implied warranty of
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;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;GNU General Public License for more details.
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;
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;You should have received a copy of the GNU General Public License along
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;with this program; if not, write to the Free Software Foundation, Inc.,
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;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
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;
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Q
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;
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PARSCCD(DOC,OPTION) ; THIS WAS COPIED FROM EN^MXMLDOM TO CUSTIMIZE FOR
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; PROCESSING CCDS
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N CBK,SUCCESS,LEVEL,NODE,HANDLE
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K ^TMP("MXMLERR",$J)
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L +^TMP("MXMLDOM",$J):5
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E Q 0
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S HANDLE=$O(^TMP("MXMLDOM",$J,""),-1)+1,^(HANDLE)=""
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L -^TMP("MXMLDOM",$J)
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S CBK("STARTELEMENT")="STARTELE^C0CMCCD" ; ONLY THIS ONE IS CHANGED ;GPL
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S CBK("ENDELEMENT")="ENDELE^MXMLDOM"
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S CBK("COMMENT")="COMMENT^MXMLDOM"
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S CBK("CHARACTERS")="CHAR^MXMLDOM"
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S CBK("ENDDOCUMENT")="ENDDOC^MXMLDOM"
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S CBK("ERROR")="ERROR^MXMLDOM"
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S (SUCCESS,LEVEL,LEVEL(0),NODE)=0,OPTION=$G(OPTION,"V1")
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D EN^MXMLPRSE(DOC,.CBK,OPTION)
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D:'SUCCESS DELETE^MXMLDOM(HANDLE)
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Q $S(SUCCESS:HANDLE,1:0)
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; Start element
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; Create new child node and push info on stack
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STARTELE(ELE,ATTR) ; COPIED FROM STARTELE^MXMLDOM AND MODIFIED TO TREAT
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; ATTRIBUTES AS SUBELEMENTS TO MAKE CCD XPATH PROCESSING EASIER
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N PARENT
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S PARENT=LEVEL(LEVEL),NODE=NODE+1
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S:PARENT ^TMP("MXMLDOM",$J,HANDLE,PARENT,"C",NODE)=ELE
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S LEVEL=LEVEL+1,LEVEL(LEVEL)=NODE,LEVEL(LEVEL,0)=ELE
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S ^TMP("MXMLDOM",$J,HANDLE,NODE)=ELE,^(NODE,"P")=PARENT
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;M ^("A")=ATTR
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N ZI S ZI="" ; INDEX FOR ATTR
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F S ZI=$O(ATTR(ZI)) Q:ZI="" D ; FOR EACH ATTRIBUTE
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. N ELE,TXT ; ABOUT TO RECURSE
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. S ELE=ZI ; TAG
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. S TXT=ATTR(ZI) ; DATA
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. D STARTELE(ELE,"") ; CREATE A NEW SUBNODE
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. D TXT^MXMLDOM("T") ; INSERT DATA TO TAG
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. D ENDELE^MXMLDOM(ELE) ; POP BACK UP A LEVEL
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Q
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;
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ISMULT(ZOID) ; RETURN TRUE IF ZOID IS ONE OF A MULTIPLE
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N ZN
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;I $$TAG(ZOID)["entry" B
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S ZN=$$NXTSIB(ZOID)
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I ZN'="" Q $$TAG(ZOID)=$$TAG(ZN) ; IF TAG IS THE SAME AS NEXT SIB TAG
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Q 0
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;
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FIRST(ZOID) ;RETURNS THE OID OF THE FIRST CHILD OF ZOID
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Q $$CHILD^MXMLDOM(C0CDOCID,ZOID)
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;
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PARENT(ZOID) ;RETURNS THE OID OF THE PARENT OF ZOID
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Q $$PARENT^MXMLDOM(C0CDOCID,ZOID)
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;
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ATT(RTN,NODE) ;GET ATTRIBUTES FOR ZOID
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S HANDLE=C0CDOCID
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K @RTN
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D GETTXT^MXMLDOM("A")
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Q
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;
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TAG(ZOID) ; RETURNS THE XML TAG FOR THE NODE
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;I ZOID=149 B ;GPLTEST
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N X,Y
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S Y=""
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S X=$G(C0CCBK("TAG")) ;IS THERE A CALLBACK FOR THIS ROUTINE
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I X'="" X X ; EXECUTE THE CALLBACK, SHOULD SET Y
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I Y="" S Y=$$NAME^MXMLDOM(C0CDOCID,ZOID)
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Q Y
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;
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NXTSIB(ZOID) ; RETURNS THE NEXT SIBLING
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Q $$SIBLING^MXMLDOM(C0CDOCID,ZOID)
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;
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DATA(ZT,ZOID) ; RETURNS DATA FOR THE NODE
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;N ZT,ZN S ZT=""
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;S C0CDOM=$NA(^TMP("MXMLDOM",$J,C0CDOCID))
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;Q $G(@C0CDOM@(ZOID,"T",1))
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S ZN=$$TEXT^MXMLDOM(C0CDOCID,ZOID,ZT)
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Q
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;
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CLEANARY(OUTARY,INARY) ; GOES THROUGH AN ARRAY AND CALLS CLEAN ON EACH NODE
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; INARY AND OUTARY PASSED BY NAME
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N ZI S ZI=""
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F S ZI=$O(@INARY@(ZI)) Q:ZI="" D ; FOR EACH NODE
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. S @OUTARY@(ZI)=$$CLEAN(@INARY@(ZI)) ; CLEAN THE NODE
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Q
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;
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CLEAN(STR) ; extrinsic function; returns string
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;; Removes all non printable characters from a string.
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;; STR by Value
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N TR,I
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F I=0:1:31 S TR=$G(TR)_$C(I)
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S TR=TR_$C(127)
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QUIT $TR(STR,TR)
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;
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STRIPTXT(OUTARY,ZARY) ; STRIPS THE "TEXT" PORTION OUT OF AN XML FILE
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; THIS IS USED TO DELETE THE NARATIVE HTML OUT OF THE CCD XML FILES BECAUSE
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; THEY DO NOT WORK RIGHT WITH THE PARSER
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;N ZWRK,ZBLD,ZI ; WORK ARRAY,BUILD ARRAY, AND COUNTER
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S ZI=$O(@ZARY@("")) ; GET FIRST LINE NUMBER
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D C0CBEGIN("ZWRK",ZI) ; INSERT FIRST LINE IN WORK ARRAY
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F S ZI=$O(@ZARY@(ZI)) Q:ZI="" D ; FOR EACH LINE OF THE ARRAY
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. I $O(@ZARY@(ZI))="" D Q ; AT THE END
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. . D C0CEND("ZWRK",ZI) ; INCLUDE LAST LINE IN WORK ARRAY
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. I ZI=1 D C0CBEGIN("ZWRK",ZI) ; START WITH FIRST LINE
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. I @ZARY@(ZI)["<text" D C0CEND("ZWRK",ZI-1) ;PREV LINE IS AN END
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. I @ZARY@(ZI)["</text>" D C0CBEGIN("ZWRK",ZI+1) ;NEXT LINE IS A BEGIN
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S ZI=""
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F S ZI=$O(ZWRK(ZI)) Q:ZI="" D ; MAKE A BUILD LIST FROM THE WORK ARRAY
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. D QUEUE^C0CXPATH("ZBLD",ZARY,$P(ZWRK(ZI),"^",1),$P(ZWRK(ZI),"^",2))
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D BUILD^C0CXPATH("ZBLD",OUTARY) ; BUILD NEW ARRAY WITHOUT TEXT SECTIONS
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K @OUTARY@(0) ; GET RID OF THE LINE COUNT
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Q
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;
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C0CBEGIN(ZA,LN) ; INSERTS A BEGIN LINE LN INTO ARRAY ZWRK, PASSED BY NAME
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N ZI
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S ZI=$O(@ZA@(""),-1)
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I ZI="" S ZI=1
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E S ZI=ZI+1 ; INCREMENT COUNT IN WORK ARRAY
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S $P(@ZA@(ZI),"^",1)=LN
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Q
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;
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C0CEND(ZB,LN) ; INSERTS AN END LINE LN INTO ARRAY ZWRK, PASSED BY NAME
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N ZI
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S ZI=$O(@ZB@(""),-1)
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I ZI="" S ZI=1
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S $P(@ZB@(ZI),"^",2)=LN
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Q
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;
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SEPARATE(OUTARY,INARY) ; SEPARATES XPATH VARIABLES ACCORDING TO THEIR
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; ROOT ; /Problems/etc/etc goes to @OUTARY@("Problems","/Problems/etc/etc")
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S ZI=""
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F S ZI=$O(@INARY@(ZI)) Q:ZI="" D ; FOR EACH ELEMENT OF THE ARRAY
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. S ZJ=$P(ZI,"/",2) ;
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. I ZJ="" S ZJ=$P(ZI,"/",3) ;
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. S @OUTARY@(ZJ,ZI)=@INARY@(ZI)
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Q
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;
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FINDTID ; FIND TEMPLATE IDS IN DOM 1
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S C0CDOCID=1
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S ZD=$NA(^TMP("MXMLDOM",$J,C0CDOCID))
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S ZN=""
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S CURSEC=""
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S TID=""
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F S ZN=$O(@ZD@(ZN)) Q:ZN="" D ;
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. I $$TAG(ZN)="root" D ;
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. . I $$TAG($$PARENT(ZN))="templateId" D ; ONLY LOOKING FOR TEMPLATES
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. . . S ZG=$$PARENT($$PARENT(ZN))
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. . . S ZG2=$$PARENT(ZG) ;COMPONENT THAT HOLDS THIS SECTION
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. . . S CMT=$G(@ZD@(ZG,"X",1))
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. . . I CMT="" S CMT="?"
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. . . I $$TAG(ZG)="section" D ;START OF A SECTION
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. . . . S CURSEC=$$PARENT(ZG)
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. . . . S SECCMT=$G(@ZD@(CURSEC,"X",1))
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. . . . I SECCMT="" S SECCMT="?"
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. . . . S SECTID=$G(@ZD@(ZN,"T",1)) ;SECTION TEMPLATE ID
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. . . S TID=$G(@ZD@(ZN,"T",1)) ;TEMPLATE ID
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. . . I CURSEC'="" D ; IF WE ARE IN A SECTION
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. . . . S CCDDIR(ZG2,CURSEC,$$TAG(ZG2),CMT,SECCMT)=TID
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. . . . S DOMMAP(ZG2)=CURSEC_U_$$TAG(ZG2)_U_TID_U_SECTID
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. . . W !,$$TAG(ZG2)," ",$G(@ZD@(ZG,"X",1))
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. . . W " root ",ZN," ",@ZD@(ZN,"T",1)
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Q
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;
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FINDALT ; PROCESS THE DOMMAP AND FIND THE ALT TAGS FOR COMPONENTS
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;
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S ZI=""
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F S ZI=$O(DOMMAP(ZI)) Q:ZI="" D ; FOR EACH NODE IN THE MAP
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. S ZJ=DOMMAP(ZI) ;
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. S PARNODE=$P(ZJ,U,1) ;PARENT NODE
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. S TAG=$P(ZJ,U,2) ;THIS TAG
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. S TID=$P(ZJ,U,3) ;THIS TEMPLATE ID
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. S PARTID=$P(ZJ,U,4) ;PARENT TEMPLATE ID
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. S ZIEN=$O(^C0CXDS(178.101,"TID",TID,"")) ;THIS NODE IEN
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. S PARIEN=$O(^C0CXDS(178.101,"TID",PARTID,"")) ;PARENT NODE IEN
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. I ZI=PARNODE D ; IF THIS IS A SECTION NODE
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. . S ALTTAG=$$GET1^DIQ(178.101,PARIEN_",",.03) ;ALT TAG FIELD FOR PARENT
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. . S NAME=$$GET1^DIQ(178.101,ZIEN_",",.01) ;NAME OF THIS NODE'S TEMPLATE
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. . W ZI," ",TAG," ",ALTTAG," ",NAME,!
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. . S C0CTAGS(ZI)=ALTTAG
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. E D ; NOT A SECTION NODE
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. . N ZJ S ZJ=""
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. . S ZJ=$O(^C0CXDS(178.101,"D",PARIEN,ZIEN,"")) ;A WHEREUSED POINTER?
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. . I ZJ'="" D ; THERE IS A NEW LABEL FOR THIS NODE
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. . . N ZK
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. . . S ZK=$$GET1^DIQ(178.111,ZJ_","_ZIEN_",",2)
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. . . I ZK'="" D ;
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. . . . W "FOUND ",ZK,!
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. . . . S C0CTAGS(ZI)=ZK ; NEW TAG FOR INTERSECTION
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Q
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;
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ALTTAG(NODE) ; SET Y EQUAL TO THE ALT TAG FOUND IN C0CTAGS IF NODE IF FOUND
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;
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S Y=$G(C0CTAGS(NODE))
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Q
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;
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SETCBK ; SET THE TAG CALLBACK FOR XPATH PROCESSSING OF THE CCD
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S C0CCBK("TAG")="D ALTTAG^C0CMCCD(ZOID)"
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Q
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;
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OUTCCD(GARYIN) ; OUTPUT THE PARSED CCD TO A TEXT FILE
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;D TEST3^C0CMXML
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N ZT S ZT=$NA(^TMP("CCDOUT",$J))
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N ZI,ZJ
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S ZI=1 S ZJ=""
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K @ZT
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F S ZJ=$O(GARYIN(ZJ)) Q:ZJ="" D ;
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. S @ZT@(ZI)=ZJ_"^"_GARYIN(ZJ)
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. S ZI=ZI+1
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S ONAME=$NA(@ZT@(1))
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W $$OUTPUT^C0CXPATH(ONAME,"CCDOUT.txt","/home/vademo2/CCR")
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K @ZT
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Q
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;
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GENXDS(ZD) ; GENERATE THE XDS PROTOTYPE RECORDS FROM A CCDDIR ARRAY
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; ARRAY ELEMENTS LOOK LIKE:
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; CCDDIR(1659,1634,"observation"," Result observaion template "," Vital signs section template ")="2.16.840.1.113883.10.20.1.31"
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;or CCDDIR(cur node,section node,cur tag,cur name,sec name)=templateId
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S ZF=178.101 ; FILE NUMBER FOR THE C0C XDS PROTOTYPE FILE
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S ZI=$Q(@ZD@("")) ;FIRST ARRAY ELEMENT
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S DONE=0
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F Q:DONE D ;
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. W @ZI,!
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. S ZJ=$QS(ZI,5)
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. S ZJ=$E(ZJ,2,$L(ZJ)) ;STRIP THE LEADING SPACE
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. S C0CFDA(ZF,"?+1,",.01)=ZJ
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. S C0CFDA(ZF,"?+1,",.02)=$QS(ZI,4) ; TAG FOR THIS TEMPLATE
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. S C0CFDA(ZF,"?+1,",1)=@ZI
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. D UPDIE
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. S ZI=$Q(@ZI)
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. I ZI="" S DONE=1
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Q
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;
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WHRUSD(ZD) ; UPDATE THE C0C XDS FILE WITH WHERE USED DATA FROM
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; CCDDIR PASS BY NAME
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; ARRAY ELEMENTS LOOK LIKE:
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; CCDDIR(1634," Vital signs section template ",1659,"observation"," Result observaion template ")="2.16.840.1.113883.10.20.1.31"
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;or CCDDIR(section node,sec name, cur node,cur tag,cur name)=templateId
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S ZF=178.101 ; FILE NUMBER FOR THE C0C XDS PROTOTYPE FILE
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S ZSF=178.111 ; WHERE USED SUBFILE OF C0C XDS PROTOTYPE FILE
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S ZI=$Q(@ZD@("")) ;FIRST ARRAY ELEMENT
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S DONE=0
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F Q:DONE D ;
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. W @ZI
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. S ZIEN=$O(^C0CXDS(178.101,"TID",@ZI,"")) ; IEN FOR THIS NODE'S TEMPLATE
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. W " IEN:",ZIEN
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. S ZJ=$QS(ZI,2)
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. S ZJ=$E(ZJ,2,$L(ZJ)) ;STRIP THE LEADING SPACE
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. S ZPIEN=$O(^C0CXDS(178.101,"B",ZJ,"")) ; PARENT IEN
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. W " PARENT IEN:",ZPIEN
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. S ZTAG=$QS(ZI,4) ; TAG FOR THIS TEMPLATE
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. W " TAG:",ZTAG,!
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. I ZIEN'=ZPIEN D ; ONLY FOR CHILD TEMPLATES
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. . S C0CFDA(ZSF,"?+1,"_ZIEN_",",.01)=ZPIEN ; NEW SUBFILE ENTRY WITH PAR PTR
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. . S C0CFDA(ZSF,"?+1,"_ZIEN_",",1)=ZTAG ; TAG FOR NEW ENTRY
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. . D UPDIE
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. ;S C0CFDA(ZF,"?+1,",1)=@ZI
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. ;D UPDIE
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. S ZI=$Q(@ZI)
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. I ZI="" S DONE=1
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Q
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;
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UPDIE ; INTERNAL ROUTINE TO CALL UPDATE^DIE AND CHECK FOR ERRORS
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K ZERR
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D CLEAN^DILF
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D UPDATE^DIE("","C0CFDA","","ZERR")
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I $D(ZERR) D ;
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. W "ERROR",!
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. ZWR ZERR
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. B
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K C0CFDA
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Q
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;
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