diff --git a/p/C0XGET3.m b/p/C0XGET3.m index d6cae52..018c3a4 100644 --- a/p/C0XGET3.m +++ b/p/C0XGET3.m @@ -1,7 +1,8 @@ -C0XGET3 ; VEN/SMH - Sam's Getters... let's try to make them simple ;2013-01-25 4:59 PM +C0XGET3 ; VEN/SMH - Sam's Getters... let's try to make them simple ;2013-02-04 12:00 PM ;;1.1;FILEMAN TRIPLE STORE; ; IEN(N) ; Public $$; Resolved IEN of a stored string such as "rdf:type" in Strings File + I +N=N Q N ; We are given the IEN, just return it back Q $$IENOF^C0XGET1($$EXT^C0XUTIL(N)) ; ; @@ -24,6 +25,10 @@ ONETYPE(R,G,O) ; Public Proc; Get Subjects for Graph/Object of a specific type D GOPS(R,G,O,"rdf:type") QUIT GSPO1(G,S,P) ; Public $$; Get Object for A Graph/Subject/Predicate combination + ; Supports forward relational navigation for predicates using "." as separator + N EP S EP=$P(P,".",2,99) ; Extended Predicate + S P=$P(P,".") ; Predicate becomes the first piece N O S O=$O(^C0X(101,"GSPO",$$IEN(G),$$IEN(S),$$IEN(P),"")) - Q:O="" "" - Q ^C0X(201,O,0) + Q:O="" "" ; Another end point for recursion + Q:$L(EP) $$GSPO1(G,O,EP) ; if we have an extended predicate, recurse + Q ^C0X(201,O,0) ; this is the end point of the recursion. diff --git a/p/C0XPT0.m b/p/C0XPT0.m index 6819413..ef20765 100644 --- a/p/C0XPT0.m +++ b/p/C0XPT0.m @@ -1,4 +1,4 @@ -C0XPT0 ; VEN/SMH - Get patient data and do something about it ;2013-01-28 4:24 PM +C0XPT0 ; VEN/SMH - Get patient data and do something about it ;2013-02-04 3:41 PM ;;1.1;FILEMAN TRIPLE STORE;; ; ; Get all graphs @@ -26,10 +26,11 @@ PROGRAPH(G) ; Process Graph (i.e. Patient) SET PARAM("MRN")=$$MRN(DEM) NEW RETURN D ADDPT(.RETURN,.PARAM) - ZWRITE RETURN N DFN S DFN=$P(RETURN(1),U,2) - D VITALS(G,DFN) + I DFN<1 S $EC=",U1," ; Debug.Assert that patient is added. + ; D VITALS(G,DFN) D PROBLEMS(G,DFN) + D ADR(G,DFN) ; Adverse Drug Reactions ; QUIT ; @@ -176,7 +177,6 @@ VITALS(G,DFN) ; Private EP; Process Vitals for a patient graph. ; For each Vital Sign Set, grab encounter N S F S=0:0 S S=$O(^TMP($J,"VS",S)) Q:S="" D . N ENC S ENC=$$GSPO1^C0XGET3(G,^TMP($J,"VS",S),"sp:encounter") - . ZWRITE ENC ; ; D EN1^GMVDCSAV(.RESULT,DATA) QUIT @@ -266,3 +266,68 @@ PROBADD(DFN,CODE,TEXT,EXPIEN,STARTDT) ; Add a problem to a patient's record. D NEW^GMPLSAVE ; API call I '$D(DA) S $EC=",U1," ; Fail here if API fails. QUIT + ; + ; +ADR(G,DFN) ; Private Proc; Extract Allergies and ADRs from Graph and add to Patient's Record + ; Input: G, Patient Graph, DFN, you should know that that is; Both by value. + ; + ; Try No known allergies first. + N NKA S NKA=$$ONETYPE1^C0XGET3(G,"sp:AllergyExclusion") ; Get NKA node + ; + ; Add allergies to record. + ; We don't really care about the return value. If patient already has + ; allergies, we just keep them. + I $L(NKA) N % S %=$$NKA^C0XPT0(DFN) QUIT ; If it exists, let's try to file it into VISTA + ; + ; If we are here, it means that the patient has allergies. Fun! + ; Process incoming allergies + N RETURN ; Local return variable. I don't expect a patient to have more than 50 allergies. + D ONETYPE^C0XGET3($NA(RETURN),G,"sp:Allergy") ; Get all allergies for patient + ; + N S F S=0:0 S S=$O(RETURN(S)) Q:'S D ; For each allergy + . ; Get the SNOMED code for the category + . N ALLERGYTYPE + . N SNOCAT S SNOCAT=$$GSPO1^C0XGET3(G,RETURN(S),"sp:category.sp:code"),SNOCAT=$P(SNOCAT,"/",$L(SNOCAT,"/")) + . I SNOCAT=414285001 S ALLERGYTYPE="F" ; Food + . E I SNOCAT=416098002 S ALLERGYTYPE="D" ; Drug + . I '$D(ALLERGYTYPE) S $EC=",U1," ; Crash if neither of these is true. + . ; + . N ALLERGEN,ALLERGENI ; Allergen, Internal Allergen + . I ALLERGYTYPE="F" D ; Food + . . S ALLERGEN=$$UP^XLFSTR($$GSPO1^C0XGET3(G,RETURN(S),"sp:otherAllergen.dcterms:title")) ; uppercase the allergen + . . I ALLERGEN="PEANUT" S ALLERGEN="PEANUTS" ; temporary fix + . . S ALLERGENI=$$GMRA^C0XPT0(ALLERGEN) ; Get internal representation for GMRA call + . ; + . ; Otherwise, it's a drug. But we need to find out if it's a class, + . ; ingredient, canonical drug, etc. Unfortunately, Smart examples don't + . ; show such variety. The only one specified is a drug class. + . ; Therefore + . ; TODO: Handle other drug items besides drug class + . ; + . E D ; Drug + . . N DC S DC=$$GSPO1^C0XGET3(G,RETURN(S),"sp:drugClassAllergen.sp:code") ; drug class + . . I '$L(DC) QUIT ; edit this line out when handling other items + . . S ALLERGEN=$P(DC,"/",$L(DC,"/")) ; Get last piece + . . ; TODO: Resolve drug class properly. Need all of RxNorm for that. + . . I ALLERGEN="N0000175503" + QUIT + ; +NKA(DFN) ; Public $$; Add no known allergies to patient record + N ORDFN S ORDFN=DFN ; CPRS API requires this one + N ORY ; Return value: 0 - Everything is okay; -1^msg: Patient already has allergies + D NKA^GMRAGUI1 ; API + QUIT $G(ORY) ; Not always returned + ; +GMRA(NAME) ; $$ Private - Retrieve GMRAGNT for food allergy from 120.82 + ; Input: Brand Name, By Value + ; Output: Entry Name^IEN;File Root for IEN + N C0PIEN S C0PIEN=$$FIND1^DIC(120.82,"","O",NAME,"B") + Q:C0PIEN $$GET1^DIQ(120.82,C0PIEN,.01)_"^"_C0PIEN_";GMRD(120.82," + QUIT "" ; no match otherwise + ; +TYPE(GMRAGNT) ; $$ Private - Get allergy Type (Drug, food, or other) + ; Input: Allergen, formatted as Allergen^IEN;File Root + ; Output: Type (internal)^Type (external) e.g. D^Drug + N C0PIEN S C0PIEN=+$P(GMRAGNT,U,2) + I GMRAGNT["GMRD(120.82," Q $$GET1^DIQ(120.82,C0PIEN,"ALLERGY TYPE","I")_U_$$GET1^DIQ(120.82,C0PIEN,"ALLERGY TYPE","E") + Q "D^Drug" ; otherwise, it's a drug