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new initialization routine INIT^C0XINIT and some bug fixes

This commit is contained in:
george 2011-11-12 17:15:56 +00:00
parent da15de4d17
commit 8a4484d509
4 changed files with 666 additions and 804 deletions
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211
p/C0XF2N.m
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@ -1,5 +1,5 @@
C0XMAIN ; GPL - Fileman Triples entry point routine ;10/13/11 17:05
;;0.1;C0X;nopatch;noreleasedate;Build 1
C0XF2N ; GPL - Fileman Triples entry point routine ;10/13/11 17:05
;;0.1;C0X;nopatch;noreleasedate;Build 5
;Copyright 2011 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;
@ -32,11 +32,12 @@ C0XMAIN ; GPL - Fileman Triples entry point routine ;10/13/11 17:05
INITFARY(ZFARY) ; INITIALIZE FILE NUMBERS AND OTHER USEFUL THINGS
; FOR THE DEFAULT TRIPLE STORE. USE OTHER VALUES FOR SUPPORTING ADDITIONAL
; TRIPLE STORES
I $D(@ZFARY) Q ; ALREADY INITIALIZED
S @ZFARY@("C0XTFN")=172.101 ; TRIPLES FILE NUMBER
S @ZFARY@("C0XSFN")=172.201 ; TRIPLES STRINGS FILE NUMBER
S @ZFARY@("C0XTN")=$NA(^C0X(101)) ; TRIPLES GLOBAL NAME
S @ZFARY@("C0XSN")=$NA(^C0X(201)) ; STRING FILE GLOBAL NAME
S @ZFARY@("C0XDIR")="/home/glilly/fmts/trunk/samples/qds/"
S @ZFARY@("C0XDIR")="/home/glilly/fmts/trunk/samples/"
S @ZFARY@("BLKLOAD")=1 ; this file supports block load
S @ZFARY@("FMTSSTYLE")="F2N" ; fileman style
D USEFARY(ZFARY)
@ -70,34 +71,39 @@ FILEIN ; INTERACTIVE ENTRY POINT FOR OPTION TO READ IN A FILE
I Y="^" Q ;
S C0XFN=Y
D IMPORT(C0XFN,C0XDIR,,"C0XFARY")
K C0XFDA
Q
;
IMPORT(FNAME,FDIR,FURL,FARY) ; EXTRINSIC THAT READS A FILE FROM THE STANDARD
IMPORT(FNAME,INDIR,INURL,FARY) ; EXTRINSIC THAT READS A FILE FROM THE STANDARD
; DIRECTORY, LOADS IT INTO THE TRIPLESTORE AS TEXT, AND RETURNS THE
; NODE NAME OF THE TEXT TRIPLE
; FDIR IS THE OPTIONAL DIRECTORY (DEFAUTS TO STANDARD DIR)
; FURL IS THE OPTIONAL URI FOR ACCESSING THE FILE FROM THE TRIPLE STORE
; INDIR IS THE OPTIONAL DIRECTORY (DEFAUTS TO STANDARD DIR)
; INURL IS THE OPTIONAL URI FOR ACCESSING THE FILE FROM THE TRIPLE STORE
; FARY IS THE OPTIONAL FILE ARRAY OF THE TRIPLE STORE TO USE
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
D USEFARY(FARY)
N ZD,ZTMP
I '$D(FDIR) S FDIR=C0XDIR ; DIRECTORY OF THE RDF FILE
I '$D(FURL) D ;
. N ZN2 S ZN2=$TR(FNAME,".","_") ; REMOVE THE DOT FROM THE NAME
. S FURL=FDIR_ZN2
I '$D(INDIR) S INDIR=C0XDIR ; DIRECTORY OF THE RDF FILE
I $G(INURL)="" D ;
. ;N ZN2 S ZN2=$P(FNAME,".",1)_"_"_$P(FNAME,".",2) ; REMOVE THE DOT
. ;S INURL=FDIR_ZN2
. S INURL=INDIR_FNAME
N ZTMP
S ZTMP=$NA(^TMP("C0X",$J,"FILEIN",1)) ; WHERE TO PUT THE INCOMING FILE
K @ZTMP ; MAKE SURE IT'S CLEAR
S C0XSTART=$$NOW^XLFDT
W !,"STARTED: ",C0XSTART
W !,"READING IN: ",FNAME
I '$$FILEREAD(ZTMP,FDIR,FNAME,4) D Q ; QUIT IF NO SUCCESS
. W !,"ERROR READING FILE: ",FDIR,FNAME
I '$$FILEREAD(ZTMP,INDIR,FNAME,4) D Q ; QUIT IF NO SUCCESS
. W !,"ERROR READING FILE: ",INDIR,FNAME
S ZRDF=$NA(^TMP("C0X",$J,"FILEIN")) ; WITHOUT THE SUBSCRIPT
W !,$O(@ZRDF@(""),-1)," LINES READ"
D INSRDF(ZRDF,FURL,FARY) ; IMPORT AND PROCESS THE RDF
D INSRDF(ZRDF,INURL,FARY) ; IMPORT AND PROCESS THE RDF
K INURL
K C0XFDA
K ^TMP("MXMLDOM",$J)
Q
;
WGET(ZURL,FARY) ; GET FROM THE INTERNET AN RDF FILE AND INSERT IT
@ -131,6 +137,8 @@ INSRDF(ZRDF,ZNAME,FARY) ; INSERT AN RDF FILE INTO THE STORE AND PROCESS
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
D USEFARY(FARY)
S BATCNT=0 ; BATCH COUNTER
S BATMAX=10000 ; TRY BATCHES OF THIS SIZE
N ZGRAPH,ZSUBJECT
S ZGRAPH="_:G"_$$LKY9 ; RANDOM GRAPH NAME
S ZSUBJECT=$$ANONS ; RANDOM ANOYMOUS SUBJECT
@ -138,11 +146,11 @@ INSRDF(ZRDF,ZNAME,FARY) ; INSERT AN RDF FILE INTO THE STORE AND PROCESS
N ZTXTNM
S ZTXTNM="_TXT_INCOMING_RDF_FILE_"_ZNAME_"_"_$$LKY9 ; NAME FOR TEXT NODE
D ADD(ZGRAPH,ZSUBJECT,"fmts:rdfSource",ZTXTNM,FARY)
D UPDIE(.C0XFDA) ; TRY IT OUT
D SWUPDIE(.C0XFDA) ; TRY IT OUT
K C0XCNT ;RESET FOR NEXT TIME
D STORETXT(ZRDF,ZTXTNM,FARY)
W !,"ADDED: ",ZGRAPH," ",ZSUBJECT," fmts:rdfSource ",ZTXTNM
D PROCESS2(.G,ZRDF,ZNAME,ZGRAPH,FARY) ; PARSE AND INSERT THE RDF
D PROCESS(.G,ZRDF,ZNAME,ZGRAPH,FARY) ; PARSE AND INSERT THE RDF
Q
;
STORETXT(ZTXT,ZNAME,FARY) ; STORE TEXT IN THE TRIPLESTORE AT ZNAME
@ -206,21 +214,33 @@ PROCESS(ZRTN,ZRDF,ZGRF,ZMETA,FARY) ; PROCESS AN INCOMING RDF FILE
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
D USEFARY(FARY)
;N BATCNT
;N BATMAX
; -- first parse the rdf file with the MXML parser
;S C0XDOCID=$$PARSE^C0CNHIN(ZRDF,"C0XARRAY") ; PARSE WITH MXML
S C0XDLC2=$$NOW^XLFDT ; START OF PARSE
S C0XDOCID=$$EN^MXMLDOM(ZRDF,"W")
K @ZRDF ; DON'T NEED INPUT BUFFER ANYMORE
; -- assign the MXLM dom global name to ZDOM
S ZDOM=$NA(^TMP("MXMLDOM",$J,C0XDOCID))
W !,$O(@ZDOM@(""),-1)," XML NODES PARSED"
S C0XNODE=$O(@ZDOM@(""),-1)
W !,C0XNODE," XML NODES PARSED"
S C0XPRS=$$NOW^XLFDT ; PARSE COMPLETE
W !,"PARSE COMPLETE AT ",C0XPRS
S C0XDIFF=$$FMDIFF^XLFDT(C0XPRS,C0XDLC2,2)
W !," ELAPSED TIME: ",C0XDIFF," SECONDS"
I C0XDIFF'=0 D ;
. W !," APPROXIMATELY ",$P(C0XNODE/C0XDIFF,".")," NODES PER SECOND"
; -- populate the metagraph to point to the graph with status unfinished
S METAS=$$ANONS ; GET AN ANONOMOUS RANDOM SUBJECT
I '$D(ZMETA) S ZMETA="_:G"_$$LKY9 ; RANDOM GRAPH NAME FOR METAGRAPH
D ADD(ZMETA,METAS,"fmts:about",ZGRF,FARY) ; POINT THE META TO THE GRAPH
D ADD(ZMETA,METAS,"fmts:status","unfinished",FARY) ; mark as unfinished
W !,"INSERTING GRAPH: ",ZGRF
;S C0XDATE=$$FMDTOUTC^C0CUTIL($$NOW^XLFDT,"DT")
S C0XDATE=$$NOW^XLFDT
D ADD(ZMETA,METAS,"fmts:dateTime",C0XDATE,FARY)
D UPDIE(.C0XFDA) ; commit the metagraph changes to the triple store
D SWUPDIE(.C0XFDA) ; commit the metagraph changes to the triple store
; --
; -- pull out the vocabularies in the RDF statement. marked with xmlns:
; -- put them in a local variable for quick reference
@ -287,120 +307,6 @@ PROCESS(ZRTN,ZRDF,ZGRF,ZMETA,FARY) ; PROCESS AN INCOMING RDF FILE
. . I C0XOBJ="" D Q ; not a happy situation
. . . W !,"ERROR, NO OBJECT FOUND FOR NODE: ",ZJ
. . D ADD(ZGRF,C0XSUB,C0XPRE,C0XOBJ) ; go for it and add a node
W !,"INSERTING ",C0XCNT," TRIPLES"
D UPDIE(.C0XFDA) ; commit the updates to the file
; next, mark the graph as finished
S C0XEND=$$NOW^XLFDT
W !," ENDED AT: ",C0XEND
S C0XDIFF=$$FMDIFF^XLFDT(C0XEND,C0XSTART,2)
W !," ELAPSED TIME: ",C0XDIFF," SECONDS"
I C0XDIFF'=0 D ;
. W !," APPROXIMATELY ",$P(C0XCNT/C0XDIFF,".")," TRIPLES PER SECOND"
Q
;
PROCESS2(ZRTN,ZRDF,ZGRF,ZMETA,FARY) ; PROCESS AN INCOMING RDF FILE
; ZRTN IS PASS BY REFERENCE AND RETURNS MESSAGES ABOUT THE PROCESSING
; ZRDF IS PASSED BY NAME AND IS THE GLOBAL CONTAINING THE RDF FILE
; ZGRF IS THE NAME OF THE GRAPH TO USE IN THE TRIPLE STORE FOR RESULTS
; ZMETA IS OPTIONAL AND IS THE NAME OF THE GRAPH TO STORE METADATA
;
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
D USEFARY(FARY)
;N BATCNT
;N BATMAX
S BATCNT=0 ; BATCH COUNTER
S BATMAX=10000 ; TRY BATCHES OF THIS SIZE
; -- first parse the rdf file with the MXML parser
;S C0XDOCID=$$PARSE^C0CNHIN(ZRDF,"C0XARRAY") ; PARSE WITH MXML
S C0XDLC2=$$NOW^XLFDT ; START OF PARSE
S C0XDOCID=$$EN^MXMLDOM(ZRDF,"W")
; -- assign the MXLM dom global name to ZDOM
S ZDOM=$NA(^TMP("MXMLDOM",$J,C0XDOCID))
S C0XNODE=$O(@ZDOM@(""),-1)
W !,C0XNODE," XML NODES PARSED"
S C0XPRS=$$NOW^XLFDT ; PARSE COMPLETE
W !,"PARSE COMPLETE AT ",C0XPRS
S C0XDIFF=$$FMDIFF^XLFDT(C0XPRS,C0XDLC2,2)
W !," ELAPSED TIME: ",C0XDIFF," SECONDS"
I C0XDIFF'=0 D ;
. W !," APPROXIMATELY ",$P(C0XNODE/C0XDIFF,".")," NODES PER SECOND"
; -- populate the metagraph to point to the graph with status unfinished
S METAS=$$ANONS ; GET AN ANONOMOUS RANDOM SUBJECT
I '$D(ZMETA) S ZMETA="_:G"_$$LKY9 ; RANDOM GRAPH NAME FOR METAGRAPH
D ADD(ZMETA,METAS,"fmts:about",ZGRF,FARY) ; POINT THE META TO THE GRAPH
D ADD(ZMETA,METAS,"fmts:status","unfinished",FARY) ; mark as unfinished
;S C0XDATE=$$FMDTOUTC^C0CUTIL($$NOW^XLFDT,"DT")
S C0XDATE=$$NOW^XLFDT
D ADD(ZMETA,METAS,"fmts:dateTime",C0XDATE,FARY)
D UPDIE(.C0XFDA) ; commit the metagraph changes to the triple store
; --
; -- pull out the vocabularies in the RDF statement. marked with xmlns:
; -- put them in a local variable for quick reference
; -- TODO: create a graph for vocabularies and validate incoming against it
;
S C0XVOC=""
N ZI,ZJ,ZK S ZI=""
F S ZI=$O(@ZDOM@(1,"A",ZI)) Q:ZI="" D ; FOR EACH xmlns
. S ZVOC=$P(ZI,"xmlns:",2)
. I ZVOC'="" S C0XVOC(ZVOC)=$G(@ZDOM@(1,"A",ZI))
;W !,"VOCABS:" ZWR C0XVOC
;
; -- look for children called rdf:Description. quit if none. not an rdf file
;
S ZI=$O(@ZDOM@(1,"C",""))
I $G(@ZDOM@(1,"C",ZI))'="rdf:Description" D Q ; not an rdf file
. W !,"Error. Not an RDF file. Cannot process."
;
; -- now process the rdf description children
;
S ZI=""
S (C0XSUB,C0XPRE,C0XOBJ)="" ; INITIALIZE subject, object and predicate
F S ZI=$O(@ZDOM@(1,"C",ZI)) Q:ZI="" D ;
. ; -- we are skipping any child that is not rdf:Description
. ; -- TODO: check to see if this is right in general
. ;
. IF $G(@ZDOM@(1,"C",ZI))'="rdf:Description" D Q ;
. . W !,"SKIPPING NODE: ",ZI
. ; -- now looking for the subject for the triples
. S ZX=$G(@ZDOM@(ZI,"A","rdf:about"))
. I ZX'="" D ; we have the subject
. . ;W " about: ",ZX
. . S C0XSUB=ZX
. E D ;
. . S ZX=$G(@ZDOM@(ZI,"A","rdf:nodeID")) ; node id is another style of subject
. . I ZX'="" D ;
. . . S C0XSUB=ZX
. I C0XSUB="" S C0XSUB=$$ANONS ; DEFAULT TO BLANK SUBJECT
. ;
. ; -- we now have the subject. the children of this node have the rest
. ;
. S ZJ="" ; for the children of the rdf:Description nodes
. F S ZJ=$O(@ZDOM@(ZI,"C",ZJ)) Q:ZJ="" D ; for each child
. . S C0XPRE=@ZDOM@(ZJ) ; the predicate without a prefix
. . S ZX=$G(@ZDOM@(ZJ,"A","xmlns")) ; name space
. . I ZX'="" S C0XPRE=ZX_C0XPRE ; add the namespace prefix
. . I C0XPRE[":" D ; expand using vocabulary
. . . N ZB,ZA
. . . S ZB=$P(C0XPRE,":",1)
. . . S ZA=$P(C0XPRE,":",2)
. . . I $G(C0XVOC(ZB))'="" D ;
. . . . S C0XPRE=C0XVOC(ZB)_ZA ; expanded
. . S ZY=$G(@ZDOM@(ZJ,"A","rdf:resource")) ; potential object
. . I ZY'="" D Q ;
. . . S C0XOBJ=ZY ; object
. . . D ADD2(ZGRF,C0XSUB,C0XPRE,C0XOBJ) ; finally. our first real triple
. . ; -- this is an else because of the quit above
. . S ZX=$G(@ZDOM@(ZJ,"A","rdf:nodeID")) ; fishing for nodeId object
. . I ZX'="" D Q ; got one
. . . S C0XOBJ=ZX ; we are using the incoming nodeIDs as object/subject
. . . ; without change... this could be foolish .. look at it again later
. . . D ADD2(ZGRF,C0XSUB,C0XPRE,C0XOBJ) ; go for it and add a node
. . S C0XOBJ=$G(@ZDOM@(ZJ,"T",1)) ; hopefully an object is here
. . I C0XOBJ="" D Q ; not a happy situation
. . . W !,"ERROR, NO OBJECT FOUND FOR NODE: ",ZJ
. . D ADD2(ZGRF,C0XSUB,C0XPRE,C0XOBJ) ; go for it and add a node
S C0XTRP=$$NOW^XLFDT ; PARSE COMPLETE
W !,"TRIPLES COMPLETE AT ",C0XTRP
S C0XDIFF=$$FMDIFF^XLFDT(C0XTRP,C0XPRS,2)
@ -418,12 +324,12 @@ PROCESS2(ZRTN,ZRDF,ZGRF,ZMETA,FARY) ; PROCESS AN INCOMING RDF FILE
W !,"INSERTION COMPLETE AT ",C0XPRS
S C0XDIFF=$$FMDIFF^XLFDT(C0XINS,C0XTRP,2)
W !," ELAPSED TIME: ",C0XDIFF," SECONDS"
W !," APPROXIMATELY ",$P(C0XCNT/C0XDIFF,".")," NODES PER SECOND"
I C0XDIFF'=0 W !," APPROXIMATELY ",$P(C0XCNT/C0XDIFF,".")," NODES PER SECOND"
S C0XEND=$$NOW^XLFDT
W !," ENDED AT: ",C0XEND
S C0XDIFF=$$FMDIFF^XLFDT(C0XEND,C0XSTART,2)
W !," ELAPSED TIME: ",C0XDIFF," SECONDS"
W !," APPROXIMATELY ",$P(C0XCNT/C0XDIFF,".")," TRIPLES PER SECOND"
I C0XDIFF'=0 W !," APPROXIMATELY ",$P(C0XCNT/C0XDIFF,".")," TRIPLES PER SECOND"
Q
;
SHOW(ZN) ;
@ -431,7 +337,7 @@ SHOW(ZN) ;
Q
;
ANONS() ; RETURNS AN ANONOMOUS SUBJECT
Q "_S:"_$$LKY9
Q "_:S"_$$LKY9
;
NEWG(NGRAPH,NMETA) ; CREATES A NEW META GRAPH, MARKS IT AS UNFINISHED
; THEN CREATES A NEW GRAPH AND POINTS THE METAGRAPH TO IT
@ -441,35 +347,6 @@ NEWG(NGRAPH,NMETA) ; CREATES A NEW META GRAPH, MARKS IT AS UNFINISHED
Q
;
ADD(ZG,ZS,ZP,ZO,FARY) ; ADD A TRIPLE TO THE TRIPLESTORE. ALL VALUES ARE TEXT
; THE FDA IS SET UP BUT THE FILES ARE NOT UPDATED. CALL UPDIE TO COMPLETE
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
D USEFARY(FARY)
I '$D(C0XCNT) S C0XCNT=0
N ZNODE
S ZNODE="N"_$$LKY17
N ZNARY ; GET READY TO CALL IENOFA
S ZNARY("ZG",ZG)=""
S ZNARY("ZS",ZS)=""
S ZNARY("ZP",ZP)=""
S ZNARY("ZO",ZO)=""
D IENOFA(.ZIENS,.ZNARY,FARY) ; RESOLVE/ADD STRINGS
;S ZGIEN=$$IENOF(ZG) ; LAYGO TO GET IEN
;S ZSIEN=$$IENOF(ZS)
;S ZPIEN=$$IENOF(ZP)
;S ZOIEN=$$IENOF(ZO)
;I $D(C0XFDA) D UPDIE ; ADD THE STRINGS IF NEEDED
S C0XCNT=C0XCNT+1
S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.01)=ZNODE
S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.02)=$O(ZIENS("IEN","ZG",""))
S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.03)=$O(ZIENS("IEN","ZS",""))
S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.04)=$O(ZIENS("IEN","ZP",""))
S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.05)=$O(ZIENS("IEN","ZO",""))
; REMEMBER TO CALL UPDIE WHEN YOU'RE DONE
Q
;
ADD2(ZG,ZS,ZP,ZO,FARY) ; ADD A TRIPLE TO THE TRIPLESTORE. ALL VALUES ARE TEXT
; THE FDA IS SET UP BUT THE FILES ARE NOT UPDATED. CALL UPDIE TO COMPLETE
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
@ -636,6 +513,14 @@ BLKERR ;
B
Q
;
SWUPDIE(ZFDA) ; SWITCH BETWEEN UPDIE AND BULKLOAD
. I $G(BLKLOAD) D ; bulk load
. . D BULKLOAD(.ZFDA) ; bulk load the batch
. E D ; no bulk load
. . D UPDIE(.ZFDA)
. K ZFDA
Q
;
UPDIE(ZFDA) ; INTERNAL ROUTINE TO CALL UPDATE^DIE AND CHECK FOR ERRORS
; ZFDA IS PASSED BY REFERENCE
;ZWR ZFDA

116
p/C0XINIT.m Normal file
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@ -0,0 +1,116 @@
C0XINIT ; GPL - Fileman Triples initialization routine ;10/13/11 17:05
;;0.1;C0X;nopatch;noreleasedate;Build 5
;Copyright 2011 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;
;This program is free software; you can redistribute it and/or modify
;it under the terms of the GNU General Public License as published by
;the Free Software Foundation; either version 2 of the License, or
;(at your option) any later version.
;
;This program is distributed in the hope that it will be useful,
;but WITHOUT ANY WARRANTY; without even the implied warranty of
;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;GNU General Public License for more details.
;
;You should have received a copy of the GNU General Public License along
;with this program; if not, write to the Free Software Foundation, Inc.,
;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
;
Q
;
CLEAR ; DELETE THE FILESTORE
K ^C0X
S ^C0X(101,0)="C0X TRIPLE^172.101I^^"
S ^C0X(201,0)="C0X STRING^172.201I^^"
Q
;
INIT ; INITIALIZE THE TRIPLE STORE - THIS DELETES THE GLOBALS AND
; START ALL OVER... USE WITH CAUTION
;
; -- we should be more sophisticated here.. at least warn the user
; -- and give them a chance to cancel
;
D CLEAR ; DELETE THE TRIPLESTORE
;
; -- we are assuming that FARY is set up properly in C0XF2N
; -- with repect to the default directory and the defaut fileman files
; -- here's what it is now: "/home/glilly/fmts/trunk/samples/"
; -- that means that all the sample files will look like:
; --- qds/QDS_0001.rdf
; --- smart-rdf-in/small.rdf
;
S FARY="C0XFARY"
D INITFARY^C0XF2N(FARY)
D USEFARY^C0XF2N(FARY)
S C0XFARY("C0XDIR")="/home/glilly/fmts/trunk/samples/smart-rdf-in/" ;
D USEFARY^C0XF2N(FARY)
S SMART(1)="cole-susan.rdf"
S SMART(2)="jones-cynthia.rdf"
S SMART(3)="small.rdf"
S SMART(4)="collins-frank.rdf"
S SMART(5)="kelly-david.rdf"
S SMART(6)="smith-maria.rdf"
S SMART(7)="ford-shirley.rdf"
S SMART(8)="morgan-jason.rdf"
S SMART(9)="west-lisa.rdf"
S SMART(10)="gracia-paul.rdf"
S SMART(11)="reed-richard.rdf"
S SMART(12)="west-sandra.rdf"
S SMART(13)="jackson-jessica.rdf"
S SMART(14)="small-allergies.rdf"
S SMART(15)="white-patricia.rdf"
N ZI S ZI=""
F S ZI=$O(SMART(ZI)) Q:ZI="" D ; for each smart file
. D IMPORT^C0XF2N(SMART(ZI),C0XDIR,,FARY) ; import to the triplestore
S FARY="C0XFARY"
S C0XFARY("C0XDIR")="/home/glilly/fmts/trunk/samples/qds/"
D USEFARY^C0XF2N(FARY)
D IMPORT^C0XF2N("QDS_0001.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0028b.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0052.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0073.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0385.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0002.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0031.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0055.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0074.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0387.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0004.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0032.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0056.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0075.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0389.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0012.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0033.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0059.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0081.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0421.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0013.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0034.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0061.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0083.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0575.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0014.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0036.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0062.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0084.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0018.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0038.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0064.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0086.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0024.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0041.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0067.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0088.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0027.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0043.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0068.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0089.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0028a.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0047.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0070.rdf",C0XDIR,,FARY)
D IMPORT^C0XF2N("QDS_0105.rdf",C0XDIR,,FARY)
;D IMPORT^C0XF2N("qds.rdf",C0XDIR,,FARY)
Q
;

893
p/C0XMAIN.m
View File

@ -1,516 +1,377 @@
C0XMAIN ; GPL - Fileman Triples entry point routine ;10/13/11 17:05
;;0.1;C0X;nopatch;noreleasedate;Build 1
;Copyright 2011 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;
;This program is free software; you can redistribute it and/or modify
;it under the terms of the GNU General Public License as published by
;the Free Software Foundation; either version 2 of the License, or
;(at your option) any later version.
;
;This program is distributed in the hope that it will be useful,
;but WITHOUT ANY WARRANTY; without even the implied warranty of
;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;GNU General Public License for more details.
;
;You should have received a copy of the GNU General Public License along
;with this program; if not, write to the Free Software Foundation, Inc.,
;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
;
Q
;
INITFARY(ZFARY) ; INITIALIZE FILE NUMBERS AND OTHER USEFUL THINGS
; FOR THE DEFAULT TRIPLE STORE. USE OTHER VALUES FOR SUPPORTING ADDITIONAL
; TRIPLE STORES
S @ZFARY@("C0XTFN")=172.101 ; TRIPLES FILE NUMBER
S @ZFARY@("C0XSFN")=172.201 ; TRIPLES STRINGS FILE NUMBER
S @ZFARY@("C0XTN")=$NA(^C0X(101)) ; TRIPLES GLOBAL NAME
S @ZFARY@("C0XSN")=$NA(^C0X(201)) ; STRING FILE GLOBAL NAME
S @ZFARY@("C0XDIR")="/home/glilly/all_smart_patient_data/smart-rdf/"
D USEFARY(ZFARY)
Q
;
USEFARY(ZFARY) ; INITIALIZES VARIABLES SAVED IN ARRAY ZFARY
N ZI S ZI=""
F S ZI=$O(@ZFARY@(ZI)) Q:ZI="" D
. ;N ZX
. S ZX="S "_ZI_"="""_@ZFARY@(ZI)_""""
. ;W !,ZX
. X ZX
Q
;
IMPORT(FNAME,FDIR,FURL,FARY) ; EXTRINSIC THAT READS A FILE FROM THE STANDARD
; DIRECTORY, LOADS IT INTO THE TRIPLESTORE AS TEXT, AND RETURNS THE
; NODE NAME OF THE TEXT TRIPLE
; FDIR IS THE OPTIONAL DIRECTORY (DEFAUTS TO STANDARD DIR)
; FURL IS THE OPTIONAL URI FOR ACCESSING THE FILE FROM THE TRIPLE STORE
; FARY IS THE OPTIONAL FILE ARRAY OF THE TRIPLE STORE TO USE
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
D USEFARY(FARY)
N ZD,ZTMP
I '$D(FDIR) S FDIR=C0XDIR ; DIRECTORY OF THE RDF FILE
I '$D(FURL) D ;
. N ZN2 S ZN2=$TR(FNAME,".","_") ; REMOVE THE DOT FROM THE NAME
. S FURL=FDIR_ZN2
N ZTMP
S ZTMP=$NA(^TMP("C0X",$J,"FILEIN",1)) ; WHERE TO PUT THE INCOMING FILE
K @ZTMP ; MAKE SURE IT'S CLEAR
S C0XSTART=$$NOW^XLFDT
W !,"STARTED: ",C0XSTART
W !,"READING IN: ",FNAME
I '$$FILEIN(ZTMP,FDIR,FNAME,4) D Q ; QUIT IF NO SUCCESS
. W !,"ERROR READING FILE: ",FDIR,FNAME
S ZRDF=$NA(^TMP("C0X",$J,"FILEIN")) ; WITHOUT THE SUBSCRIPT
W !,$O(@ZRDF@(""),-1)," LINES READ"
D INSRDF(ZRDF,FURL,FARY) ; IMPORT AND PROCESS THE RDF
Q
;
WGET(ZURL,FARY) ; GET FROM THE INTERNET AN RDF FILE AND INSERT IT
;
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
D USEFARY(FARY)
;N ZLOC,ZTMP
K ZTMP
S ZLOC=$NA(^TMP("C0X","WGET",$J))
K @ZLOC
S C0XSTART=$$NOW^XLFDT
W !,"STARTED: ",C0XSTART
W !,"DOWNLOADING: ",ZURL
S OK=$$httpGET^%zewdGTM(ZURL,.ZTMP)
M @ZLOC=ZTMP
W !,$O(@ZLOC@(""),-1)," LINES READ"
D INSRDF(ZLOC,ZURL,FARY)
Q
;
INSRDF(ZRDF,ZNAME,FARY) ; INSERT AN RDF FILE INTO THE STORE AND PROCESS
; ZRDF IS PASSED BY NAME
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
D USEFARY(FARY)
N ZGRAPH,ZSUBJECT
S ZGRAPH="_:G"_$$LKY9 ; RANDOM GRAPH NAME
S ZSUBJECT=$$ANONS ; RANDOM ANOYMOUS SUBJECT
D ADD(ZGRAPH,ZSUBJECT,"fmts:url",ZNAME,FARY)
N ZTXTNM
S ZTXTNM="_TXT_INCOMING_RDF_FILE_"_ZNAME_"_"_$$LKY9 ; NAME FOR TEXT NODE
D ADD(ZGRAPH,ZSUBJECT,"fmts:rdfSource",ZTXTNM,FARY)
D UPDIE(.C0XFDA) ; TRY IT OUT
K C0XCNT ;RESET FOR NEXT TIME
D STORETXT(ZRDF,ZTXTNM,FARY)
W !,"ADDED: ",ZGRAPH," ",ZSUBJECT," fmts:rdfSource ",ZTXTNM
D PROCESS2(.G,ZRDF,ZNAME,ZGRAPH,FARY) ; PARSE AND INSERT THE RDF
Q
;
STORETXT(ZTXT,ZNAME,FARY) ; STORE TEXT IN THE TRIPLESTORE AT ZNAME
;
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
D USEFARY(FARY)
N ZIEN
S ZIEN=$$IENOF(ZNAME,FARY) ; GET THE IEN
D CLEAN^DILF
K ZERR
D WP^DIE(C0XSFN,ZIEN_",",1,,ZTXT,"ZERR")
I $D(ZERR) D ;
. ZWR ZERR
Q
;
GETTXT(ZRTN,ZNAME,FARY) ; RETURNS RDF SOURCE OR OTHER TEXT
; ZRTN IS PASSED BY REFERENCE
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
D USEFARY(FARY)
N ZIEN
S ZIEN=$$IENOF(ZNAME)
S OK=$$GET1^DIQ(C0XSFN,ZIEN_",",1,,"ZRTN")
Q
;
WHERETXT(ZNAME,FARY) ; EXTRINSIC WHICH RETURNS THE NAME OF THE GLOBAL
; WHERE THE TEXT IS LOCATED. NAME IS THE NAME OF THE STRING
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
D USEFARY(FARY)
N ZIEN
S ZIEN=$$IENOF(ZNAME)
Q $NA(@C0XSN@(ZIEN,1))
;
FILEIN(ZINTMP,ZDIR,ZFNAME,ZLVL) ; READS A FILE INTO ZINTMP USING FTG^%ZISH
; ZINTMP IS PASSED BY NAME AND INCLUDES THE NEW SUBSCRIPT
; IE ^TMP("C0X","FILEIN",1)
; ZLVL IN THIS CASE WOULD BE 3 INCREMENTING THE 1
; EXTRINSIC WHICH RETURNS THE RESULT OF FTG^%ZISH
S OK=$$FTG^%ZISH(ZDIR,FNAME,ZINTMP,ZLVL)
Q OK
;
TESTPROC ; TEST PROCESS WITH EXISTING SMALL RDF FILE
S ZIN=$NA(^TMP("C0X",12226,"FILEIN"))
S ZGRAPH="/test/rdfFile"
S ZM="/test/rdfFile/meta"
D PROCESS(.G,ZIN,ZGRAPH,ZM)
Q
;
PROCESS(ZRTN,ZRDF,ZGRF,ZMETA,FARY) ; PROCESS AN INCOMING RDF FILE
; ZRTN IS PASS BY REFERENCE AND RETURNS MESSAGES ABOUT THE PROCESSING
; ZRDF IS PASSED BY NAME AND IS THE GLOBAL CONTAINING THE RDF FILE
; ZGRF IS THE NAME OF THE GRAPH TO USE IN THE TRIPLE STORE FOR RESULTS
; ZMETA IS OPTIONAL AND IS THE NAME OF THE GRAPH TO STORE METADATA
;
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
D USEFARY(FARY)
; -- first parse the rdf file with the MXML parser
;S C0XDOCID=$$PARSE^C0CNHIN(ZRDF,"C0XARRAY") ; PARSE WITH MXML
S C0XDOCID=$$EN^MXMLDOM(ZRDF,"W")
; -- assign the MXLM dom global name to ZDOM
S ZDOM=$NA(^TMP("MXMLDOM",$J,C0XDOCID))
W !,$O(@ZDOM@(""),-1)," XML NODES PARSED"
; -- populate the metagraph to point to the graph with status unfinished
S METAS=$$ANONS ; GET AN ANONOMOUS RANDOM SUBJECT
I '$D(ZMETA) S ZMETA="_:G"_$$LKY9 ; RANDOM GRAPH NAME FOR METAGRAPH
D ADD(ZMETA,METAS,"fmts:about",ZGRF,FARY) ; POINT THE META TO THE GRAPH
D ADD(ZMETA,METAS,"fmts:status","unfinished",FARY) ; mark as unfinished
;S C0XDATE=$$FMDTOUTC^C0CUTIL($$NOW^XLFDT,"DT")
S C0XDATE=$$NOW^XLFDT
D ADD(ZMETA,METAS,"fmts:dateTime",C0XDATE,FARY)
D UPDIE(.C0XFDA) ; commit the metagraph changes to the triple store
; --
; -- pull out the vocabularies in the RDF statement. marked with xmlns:
; -- put them in a local variable for quick reference
; -- TODO: create a graph for vocabularies and validate incoming against it
;
S C0XVOC=""
N ZI,ZJ,ZK S ZI=""
F S ZI=$O(@ZDOM@(1,"A",ZI)) Q:ZI="" D ; FOR EACH xmlns
. S ZVOC=$P(ZI,"xmlns:",2)
. I ZVOC'="" S C0XVOC(ZVOC)=$G(@ZDOM@(1,"A",ZI))
;W !,"VOCABS:" ZWR C0XVOC
;
; -- look for children called rdf:Description. quit if none. not an rdf file
;
S ZI=$O(@ZDOM@(1,"C",""))
I $G(@ZDOM@(1,"C",ZI))'="rdf:Description" D Q ; not an rdf file
. W !,"Error. Not an RDF file. Cannot process."
;
; -- now process the rdf description children
;
S ZI=""
S (C0XSUB,C0XPRE,C0XOBJ)="" ; INITIALIZE subject, object and predicate
F S ZI=$O(@ZDOM@(1,"C",ZI)) Q:ZI="" D ;
. ; -- we are skipping any child that is not rdf:Description
. ; -- TODO: check to see if this is right in general
. ;
. IF $G(@ZDOM@(1,"C",ZI))'="rdf:Description" D Q ;
. . W !,"SKIPPING NODE: ",ZI
. ; -- now looking for the subject for the triples
. S ZX=$G(@ZDOM@(ZI,"A","rdf:about"))
. I ZX'="" D ; we have the subject
. . ;W " about: ",ZX
. . S C0XSUB=ZX
. E D ;
. . S ZX=$G(@ZDOM@(ZI,"A","rdf:nodeID")) ; node id is another style of subject
. . I ZX'="" D ;
. . . S C0XSUB=ZX
. I C0XSUB="" S C0XSUB=$$ANONS ; DEFAULT TO BLANK SUBJECT
. ;
. ; -- we now have the subject. the children of this node have the rest
. ;
. S ZJ="" ; for the children of the rdf:Description nodes
. F S ZJ=$O(@ZDOM@(ZI,"C",ZJ)) Q:ZJ="" D ; for each child
. . S C0XPRE=@ZDOM@(ZJ) ; the predicate without a prefix
. . S ZX=$G(@ZDOM@(ZJ,"A","xmlns")) ; name space
. . I ZX'="" S C0XPRE=ZX_C0XPRE ; add the namespace prefix
. . I C0XPRE[":" D ; expand using vocabulary
. . . N ZB,ZA
. . . S ZB=$P(C0XPRE,":",1)
. . . S ZA=$P(C0XPRE,":",2)
. . . I $G(C0XVOC(ZB))'="" D ;
. . . . S C0XPRE=C0XVOC(ZB)_ZA ; expanded
. . S ZY=$G(@ZDOM@(ZJ,"A","rdf:resource")) ; potential object
. . I ZY'="" D Q ;
. . . S C0XOBJ=ZY ; object
. . . D ADD(ZGRF,C0XSUB,C0XPRE,C0XOBJ) ; finally. our first real triple
. . ; -- this is an else because of the quit above
. . S ZX=$G(@ZDOM@(ZJ,"A","rdf:nodeID")) ; fishing for nodeId object
. . I ZX'="" D Q ; got one
. . . S C0XOBJ=ZX ; we are using the incoming nodeIDs as object/subject
. . . ; without change... this could be foolish .. look at it again later
. . . D ADD(ZGRF,C0XSUB,C0XPRE,C0XOBJ) ; go for it and add a node
. . S C0XOBJ=$G(@ZDOM@(ZJ,"T",1)) ; hopefully an object is here
. . I C0XOBJ="" D Q ; not a happy situation
. . . W !,"ERROR, NO OBJECT FOUND FOR NODE: ",ZJ
. . D ADD(ZGRF,C0XSUB,C0XPRE,C0XOBJ) ; go for it and add a node
W !,"INSERTING ",C0XCNT," TRIPLES"
D UPDIE(.C0XFDA) ; commit the updates to the file
; next, mark the graph as finished
S C0XEND=$$NOW^XLFDT
W !," ENDED AT: ",C0XEND
S C0XDIFF=$$FMDIFF^XLFDT(C0XEND,C0XSTART,2)
W !," ELAPSED TIME: ",C0XDIFF," SECONDS"
W !," APPROXIMATELY ",$P(C0XCNT/C0XDIFF,".")," TRIPLES PER SECOND"
Q
;
PROCESS2(ZRTN,ZRDF,ZGRF,ZMETA,FARY) ; PROCESS AN INCOMING RDF FILE
; ZRTN IS PASS BY REFERENCE AND RETURNS MESSAGES ABOUT THE PROCESSING
; ZRDF IS PASSED BY NAME AND IS THE GLOBAL CONTAINING THE RDF FILE
; ZGRF IS THE NAME OF THE GRAPH TO USE IN THE TRIPLE STORE FOR RESULTS
; ZMETA IS OPTIONAL AND IS THE NAME OF THE GRAPH TO STORE METADATA
;
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
D USEFARY(FARY)
;N BATCNT
;N BATMAX
S BATCNT=0 ; BATCH COUNTER
S BATMAX=10000 ; TRY BATCHES OF THIS SIZE
; -- first parse the rdf file with the MXML parser
;S C0XDOCID=$$PARSE^C0CNHIN(ZRDF,"C0XARRAY") ; PARSE WITH MXML
S C0XDOCID=$$EN^MXMLDOM(ZRDF,"W")
; -- assign the MXLM dom global name to ZDOM
S ZDOM=$NA(^TMP("MXMLDOM",$J,C0XDOCID))
W !,$O(@ZDOM@(""),-1)," XML NODES PARSED"
; -- populate the metagraph to point to the graph with status unfinished
S METAS=$$ANONS ; GET AN ANONOMOUS RANDOM SUBJECT
I '$D(ZMETA) S ZMETA="_:G"_$$LKY9 ; RANDOM GRAPH NAME FOR METAGRAPH
D ADD(ZMETA,METAS,"fmts:about",ZGRF,FARY) ; POINT THE META TO THE GRAPH
D ADD(ZMETA,METAS,"fmts:status","unfinished",FARY) ; mark as unfinished
;S C0XDATE=$$FMDTOUTC^C0CUTIL($$NOW^XLFDT,"DT")
S C0XDATE=$$NOW^XLFDT
D ADD(ZMETA,METAS,"fmts:dateTime",C0XDATE,FARY)
D UPDIE(.C0XFDA) ; commit the metagraph changes to the triple store
; --
; -- pull out the vocabularies in the RDF statement. marked with xmlns:
; -- put them in a local variable for quick reference
; -- TODO: create a graph for vocabularies and validate incoming against it
;
S C0XVOC=""
N ZI,ZJ,ZK S ZI=""
F S ZI=$O(@ZDOM@(1,"A",ZI)) Q:ZI="" D ; FOR EACH xmlns
. S ZVOC=$P(ZI,"xmlns:",2)
. I ZVOC'="" S C0XVOC(ZVOC)=$G(@ZDOM@(1,"A",ZI))
;W !,"VOCABS:" ZWR C0XVOC
;
; -- look for children called rdf:Description. quit if none. not an rdf file
;
S ZI=$O(@ZDOM@(1,"C",""))
I $G(@ZDOM@(1,"C",ZI))'="rdf:Description" D Q ; not an rdf file
. W !,"Error. Not an RDF file. Cannot process."
;
; -- now process the rdf description children
;
S ZI=""
S (C0XSUB,C0XPRE,C0XOBJ)="" ; INITIALIZE subject, object and predicate
F S ZI=$O(@ZDOM@(1,"C",ZI)) Q:ZI="" D ;
. ; -- we are skipping any child that is not rdf:Description
. ; -- TODO: check to see if this is right in general
. ;
. IF $G(@ZDOM@(1,"C",ZI))'="rdf:Description" D Q ;
. . W !,"SKIPPING NODE: ",ZI
. ; -- now looking for the subject for the triples
. S ZX=$G(@ZDOM@(ZI,"A","rdf:about"))
. I ZX'="" D ; we have the subject
. . ;W " about: ",ZX
. . S C0XSUB=ZX
. E D ;
. . S ZX=$G(@ZDOM@(ZI,"A","rdf:nodeID")) ; node id is another style of subject
. . I ZX'="" D ;
. . . S C0XSUB=ZX
. I C0XSUB="" S C0XSUB=$$ANONS ; DEFAULT TO BLANK SUBJECT
. ;
. ; -- we now have the subject. the children of this node have the rest
. ;
. S ZJ="" ; for the children of the rdf:Description nodes
. F S ZJ=$O(@ZDOM@(ZI,"C",ZJ)) Q:ZJ="" D ; for each child
. . S C0XPRE=@ZDOM@(ZJ) ; the predicate without a prefix
. . S ZX=$G(@ZDOM@(ZJ,"A","xmlns")) ; name space
. . I ZX'="" S C0XPRE=ZX_C0XPRE ; add the namespace prefix
. . I C0XPRE[":" D ; expand using vocabulary
. . . N ZB,ZA
. . . S ZB=$P(C0XPRE,":",1)
. . . S ZA=$P(C0XPRE,":",2)
. . . I $G(C0XVOC(ZB))'="" D ;
. . . . S C0XPRE=C0XVOC(ZB)_ZA ; expanded
. . S ZY=$G(@ZDOM@(ZJ,"A","rdf:resource")) ; potential object
. . I ZY'="" D Q ;
. . . S C0XOBJ=ZY ; object
. . . D ADD2(ZGRF,C0XSUB,C0XPRE,C0XOBJ) ; finally. our first real triple
. . ; -- this is an else because of the quit above
. . S ZX=$G(@ZDOM@(ZJ,"A","rdf:nodeID")) ; fishing for nodeId object
. . I ZX'="" D Q ; got one
. . . S C0XOBJ=ZX ; we are using the incoming nodeIDs as object/subject
. . . ; without change... this could be foolish .. look at it again later
. . . D ADD2(ZGRF,C0XSUB,C0XPRE,C0XOBJ) ; go for it and add a node
. . S C0XOBJ=$G(@ZDOM@(ZJ,"T",1)) ; hopefully an object is here
. . I C0XOBJ="" D Q ; not a happy situation
. . . W !,"ERROR, NO OBJECT FOUND FOR NODE: ",ZJ
. . D ADD2(ZGRF,C0XSUB,C0XPRE,C0XOBJ) ; go for it and add a node
W !,"INSERTING ",C0XCNT," TRIPLES"
I $D(C0XFDA) D UPDIE(.C0XFDA) ; commit the updates to the file
; next, mark the graph as finished
S C0XEND=$$NOW^XLFDT
W !," ENDED AT: ",C0XEND
S C0XDIFF=$$FMDIFF^XLFDT(C0XEND,C0XSTART,2)
W !," ELAPSED TIME: ",C0XDIFF," SECONDS"
W !," APPROXIMATELY ",$P(C0XCNT/C0XDIFF,".")," TRIPLES PER SECOND"
Q
;
SHOW(ZN) ;
ZWR ^TMP("MXMLDOM",$J,1,ZN,*)
Q
;
ANONS() ; RETURNS AN ANONOMOUS SUBJECT
Q "_S:"_$$LKY9
;
NEWG(NGRAPH,NMETA) ; CREATES A NEW META GRAPH, MARKS IT AS UNFINISHED
; THEN CREATES A NEW GRAPH AND POINTS THE METAGRAPH TO IT
; NGRAPH AND NMETA ARE PASSED BY REFERENCE AND ARE THE RETURN
S NGRAPH="G"_$$LKY9
S NMETA=NGRAPH_"A"
Q
;
ADD(ZG,ZS,ZP,ZO,FARY) ; ADD A TRIPLE TO THE TRIPLESTORE. ALL VALUES ARE TEXT
; THE FDA IS SET UP BUT THE FILES ARE NOT UPDATED. CALL UPDIE TO COMPLETE
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
D USEFARY(FARY)
I '$D(C0XCNT) S C0XCNT=0
N ZNODE
S ZNODE="N"_$$LKY17
N ZNARY ; GET READY TO CALL IENOFA
S ZNARY("ZG",ZG)=""
S ZNARY("ZS",ZS)=""
S ZNARY("ZP",ZP)=""
S ZNARY("ZO",ZO)=""
D IENOFA(.ZIENS,.ZNARY,FARY) ; RESOLVE/ADD STRINGS
;S ZGIEN=$$IENOF(ZG) ; LAYGO TO GET IEN
;S ZSIEN=$$IENOF(ZS)
;S ZPIEN=$$IENOF(ZP)
;S ZOIEN=$$IENOF(ZO)
;I $D(C0XFDA) D UPDIE ; ADD THE STRINGS IF NEEDED
S C0XCNT=C0XCNT+1
S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.01)=ZNODE
S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.02)=$O(ZIENS("IEN","ZG",""))
S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.03)=$O(ZIENS("IEN","ZS",""))
S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.04)=$O(ZIENS("IEN","ZP",""))
S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.05)=$O(ZIENS("IEN","ZO",""))
; REMEMBER TO CALL UPDIE WHEN YOU'RE DONE
Q
;
ADD2(ZG,ZS,ZP,ZO,FARY) ; ADD A TRIPLE TO THE TRIPLESTORE. ALL VALUES ARE TEXT
; THE FDA IS SET UP BUT THE FILES ARE NOT UPDATED. CALL UPDIE TO COMPLETE
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
D USEFARY(FARY)
I '$D(C0XCNT) S C0XCNT=0
N ZNODE
S ZNODE="N"_$$LKY17
N ZNARY ; GET READY TO CALL IENOFA
S ZNARY("ZG",ZG)=""
S ZNARY("ZS",ZS)=""
S ZNARY("ZP",ZP)=""
S ZNARY("ZO",ZO)=""
D IENOFA(.ZIENS,.ZNARY,FARY) ; RESOLVE/ADD STRINGS
;S ZGIEN=$$IENOF(ZG) ; LAYGO TO GET IEN
;S ZSIEN=$$IENOF(ZS)
;S ZPIEN=$$IENOF(ZP)
;S ZOIEN=$$IENOF(ZO)
;I $D(C0XFDA) D UPDIE ; ADD THE STRINGS IF NEEDED
S C0XCNT=C0XCNT+1
S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.01)=ZNODE
S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.02)=$O(ZIENS("IEN","ZG",""))
S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.03)=$O(ZIENS("IEN","ZS",""))
S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.04)=$O(ZIENS("IEN","ZP",""))
S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.05)=$O(ZIENS("IEN","ZO",""))
S BATCNT=BATCNT+1
I BATCNT=BATMAX D ; BATCH IS DONE
. D UPDIE(.C0XFDA)
. K C0XFDA
. S BATCNT=0 ; RESET COUNTER
; REMEMBER TO CALL UPDIE WHEN YOU'RE DONE
Q
;
LKY9() ;EXTRINIC THAT RETURNS A RANDOM 9 DIGIT NUMBER. USED FOR GENERATING
; UNIQUE NODE AND GRAPH NAMES
N ZN,ZI
S ZN=""
F ZI=1:1:9 D ;
. S ZN=ZN_$R(10)
Q ZN
;
LKY17() ;EXTRINIC THAT RETURNS A RANDOM 9 DIGIT NUMBER. USED FOR GENERATING
; UNIQUE NODE AND GRAPH NAMES
N ZN,ZI
S ZN=""
F ZI=1:1:17 D ;
. S ZN=ZN_$R(10)
Q ZN
;
IENOF(ZSTRING,FARY) ; EXTRINSIC WHICH RETURNS THE IEN OF ZS IN THE STRINGS FILE
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
N ZIEN
S ZIEN=$O(@C0XSN@("B",ZSTRING,""))
I ZIEN="" D ;
. S C0XFDA2(C0XSFN,"+1,",.01)=ZSTRING
. D UPDIE(.C0XFDA2)
. S ZIEN=$O(@C0XSN@("B",ZSTRING,""))
. K C0XFDA2
Q ZIEN
;
IENOFA(ZOUTARY,ZINARY,FARY) ; RESOLVE STRINGS TO IEN IN STRINGS FILE
; OR ADD THEM IF
; MISSING. ZINARY AND ZOUTARY ARE PASSED BY REFERENCE
; ZINARY LOOKS LIKE ZINARY("VAR","VAL")=""
; RETURNS IN ZOUTARY OF THE FORM ZOUTARY("IEN","VAR",IEN)=""
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
K ZOUTARY ; START WITH CLEAN RESULTS
K C0XFDA2 ; USE A SEPARATE FDA FOR THIS
N ZI S ZI=""
N ZV,ZIEN
N ZCNT S ZCNT=0
F S ZI=$O(ZINARY(ZI)) Q:ZI="" D ; LOOK FOR MISSING STRINGS
. S ZV=$O(ZINARY(ZI,""))
. I $O(@C0XSN@("B",ZV,""))="" D ;
. . S ZCNT=ZCNT+1
. . S C0XFDA2(C0XSFN,"+"_ZCNT_",",.01)=ZV
I $D(C0XFDA2) D ;
. D UPDIE(.C0XFDA2) ; ADD MISSING STRINGS
. K C0XFDA2 ; CLEAN UP
F S ZI=$O(ZINARY(ZI)) Q:ZI="" D ; NOT GET ALL IENS
. S ZV=$O(ZINARY(ZI,""))
. S ZIEN=$O(@C0XSN@("B",ZV,"")) ; THEY SHOULD BE THERE NOW
. I ZIEN="" D ;
. . W !,"ERROR ADDING STRING: ",ZV
. . B
. S ZOUTARY("IEN",ZI,ZIEN)=""
Q
;
UPDIE(ZFDA) ; INTERNAL ROUTINE TO CALL UPDATE^DIE AND CHECK FOR ERRORS
; ZFDA IS PASSED BY REFERENCE
;ZWR ZFDA
;B
K ZERR
D CLEAN^DILF
D UPDATE^DIE("","ZFDA","","ZERR")
I $D(ZERR) S ZZERR=ZZERR ; ZZERR DOESN'T EXIST,
; INVOKE THE ERROR TRAP IF TASKED
;. W "ERROR",!
;. ZWR ZERR
;. B
K ZFDA
Q
;
C0XMAIN ; GPL - Fileman Triples entry point routine ;10/13/11 17:05
;;0.1;C0X;nopatch;noreleasedate;Build 5
;Copyright 2011 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;
;This program is free software; you can redistribute it and/or modify
;it under the terms of the GNU General Public License as published by
;the Free Software Foundation; either version 2 of the License, or
;(at your option) any later version.
;
;This program is distributed in the hope that it will be useful,
;but WITHOUT ANY WARRANTY; without even the implied warranty of
;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;GNU General Public License for more details.
;
;You should have received a copy of the GNU General Public License along
;with this program; if not, write to the Free Software Foundation, Inc.,
;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
;
Q
;
INITFARY(ZFARY) ; INITIALIZE FILE NUMBERS AND OTHER USEFUL THINGS
; FOR THE DEFAULT TRIPLE STORE. USE OTHER VALUES FOR SUPPORTING ADDITIONAL
; TRIPLE STORES
S @ZFARY@("C0XTFN")=172.101 ; TRIPLES FILE NUMBER
S @ZFARY@("C0XSFN")=172.201 ; TRIPLES STRINGS FILE NUMBER
S @ZFARY@("C0XTN")=$NA(^C0X(101)) ; TRIPLES GLOBAL NAME
S @ZFARY@("C0XSN")=$NA(^C0X(201)) ; STRING FILE GLOBAL NAME
;S @ZFARY@("C0XDIR")="/home/glilly/all_smart_patient_data/smart-rdf/"
S @ZFARY@("C0XDIR")="/home/george/fmts/trunk/samples/"
D USEFARY(ZFARY)
Q
;
USEFARY(ZFARY) ; INITIALIZES VARIABLES SAVED IN ARRAY ZFARY
N ZI S ZI=""
F S ZI=$O(@ZFARY@(ZI)) Q:ZI="" D
. ;N ZX
. S ZX="S "_ZI_"="""_@ZFARY@(ZI)_""""
. ;W !,ZX
. X ZX
Q
;
IMPORT(FNAME,FDIR,FURL,FARY) ; EXTRINSIC THAT READS A FILE FROM THE STANDARD
; DIRECTORY, LOADS IT INTO THE TRIPLESTORE AS TEXT, AND RETURNS THE
; NODE NAME OF THE TEXT TRIPLE
; FDIR IS THE OPTIONAL DIRECTORY (DEFAUTS TO STANDARD DIR)
; FURL IS THE OPTIONAL URI FOR ACCESSING THE FILE FROM THE TRIPLE STORE
; FARY IS THE OPTIONAL FILE ARRAY OF THE TRIPLE STORE TO USE
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
D USEFARY(FARY)
N ZD,ZTMP
I '$D(FDIR) S FDIR=C0XDIR ; DIRECTORY OF THE RDF FILE
I '$D(FURL) D ;
. N ZN2 S ZN2=$TR(FNAME,".","_") ; REMOVE THE DOT FROM THE NAME
. S FURL=FDIR_ZN2
N ZTMP
S ZTMP=$NA(^TMP("C0X",$J,"FILEIN",1)) ; WHERE TO PUT THE INCOMING FILE
K @ZTMP ; MAKE SURE IT'S CLEAR
S C0XSTART=$$NOW^XLFDT
W !,"STARTED: ",C0XSTART
W !,"READING IN: ",FNAME
I '$$FILEIN(ZTMP,FDIR,FNAME,4) D Q ; QUIT IF NO SUCCESS
. W !,"ERROR READING FILE: ",FDIR,FNAME
S ZRDF=$NA(^TMP("C0X",$J,"FILEIN")) ; WITHOUT THE SUBSCRIPT
W !,$O(@ZRDF@(""),-1)," LINES READ"
D INSRDF(ZRDF,FURL,FARY) ; IMPORT AND PROCESS THE RDF
Q
;
WGET(ZURL,FARY) ; GET FROM THE INTERNET AN RDF FILE AND INSERT IT
;
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
D USEFARY(FARY)
;N ZLOC,ZTMP
K ZTMP
S ZLOC=$NA(^TMP("C0X","WGET",$J))
S C0XSTART=$$NOW^XLFDT
W !,"STARTED: ",C0XSTART
W !,"DOWNLOADING: ",ZURL
S OK=$$httpGET^%zewdGTM(ZURL,.ZTMP)
M @ZLOC=ZTMP
W !,$O(@ZLOC@(""),-1)," LINES READ"
D INSRDF(ZLOC,ZURL,FARY)
Q
;
INSRDF(ZRDF,ZNAME,FARY) ; INSERT AN RDF FILE INTO THE STORE AND PROCESS
; ZRDF IS PASSED BY NAME
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
D USEFARY(FARY)
N ZGRAPH,ZSUBJECT
S ZGRAPH="_:G"_$$LKY9 ; RANDOM GRAPH NAME
S ZSUBJECT=$$ANONS ; RANDOM ANOYMOUS SUBJECT
D ADD(ZGRAPH,ZSUBJECT,"fmts:url",ZNAME,FARY)
N ZTXTNM
S ZTXTNM="_TXT_INCOMING_RDF_FILE_"_ZNAME_"_"_$$LKY9 ; NAME FOR TEXT NODE
D ADD(ZGRAPH,ZSUBJECT,"fmts:rdfSource",ZTXTNM,FARY)
D UPDIE(.C0XFDA) ; TRY IT OUT
K C0XCNT ;RESET FOR NEXT TIME
D STORETXT(ZRDF,ZTXTNM,FARY)
W !,"ADDED: ",ZGRAPH," ",ZSUBJECT," fmts:rdfSource ",ZTXTNM
D PROCESS(.G,ZRDF,ZNAME,ZGRAPH,FARY) ; PARSE AND INSERT THE RDF
Q
;
STORETXT(ZTXT,ZNAME,FARY) ; STORE TEXT IN THE TRIPLESTORE AT ZNAME
;
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
D USEFARY(FARY)
N ZIEN
S ZIEN=$$IENOF(ZNAME,FARY) ; GET THE IEN
D CLEAN^DILF
K ZERR
D WP^DIE(C0XSFN,ZIEN_",",1,,ZTXT,"ZERR")
I $D(ZERR) D ;
. ZWR ZERR
Q
;
GETTXT(ZRTN,ZNAME,FARY) ; RETURNS RDF SOURCE OR OTHER TEXT
; ZRTN IS PASSED BY REFERENCE
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
D USEFARY(FARY)
N ZIEN
S ZIEN=$$IENOF(ZNAME)
S OK=$$GET1^DIQ(C0XSFN,ZIEN_",",1,,"ZRTN")
Q
;
WHERETXT(ZNAME,FARY) ; EXTRINSIC WHICH RETURNS THE NAME OF THE GLOBAL
; WHERE THE TEXT IS LOCATED. NAME IS THE NAME OF THE STRING
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
D USEFARY(FARY)
N ZIEN
S ZIEN=$$IENOF(ZNAME)
Q $NA(@C0XSN@(ZIEN,1))
;
FILEIN(ZINTMP,ZDIR,ZFNAME,ZLVL) ; READS A FILE INTO ZINTMP USING FTG^%ZISH
; ZINTMP IS PASSED BY NAME AND INCLUDES THE NEW SUBSCRIPT
; IE ^TMP("C0X","FILEIN",1)
; ZLVL IN THIS CASE WOULD BE 3 INCREMENTING THE 1
; EXTRINSIC WHICH RETURNS THE RESULT OF FTG^%ZISH
S OK=$$FTG^%ZISH(ZDIR,FNAME,ZINTMP,ZLVL)
Q OK
;
TESTPROC ; TEST PROCESS WITH EXISTING SMALL RDF FILE
S ZIN=$NA(^TMP("C0X",12226,"FILEIN"))
S ZGRAPH="/test/rdfFile"
S ZM="/test/rdfFile/meta"
D PROCESS(.G,ZIN,ZGRAPH,ZM)
Q
;
PROCESS(ZRTN,ZRDF,ZGRF,ZMETA,FARY) ; PROCESS AN INCOMING RDF FILE
; ZRTN IS PASS BY REFERENCE AND RETURNS MESSAGES ABOUT THE PROCESSING
; ZRDF IS PASSED BY NAME AND IS THE GLOBAL CONTAINING THE RDF FILE
; ZGRF IS THE NAME OF THE GRAPH TO USE IN THE TRIPLE STORE FOR RESULTS
; ZMETA IS OPTIONAL AND IS THE NAME OF THE GRAPH TO STORE METADATA
;
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
D USEFARY(FARY)
; -- first parse the rdf file with the MXML parser
;S C0XDOCID=$$PARSE^C0CNHIN(ZRDF,"C0XARRAY") ; PARSE WITH MXML
S C0XDOCID=$$EN^MXMLDOM(ZRDF,"W")
; -- assign the MXLM dom global name to ZDOM
S ZDOM=$NA(^TMP("MXMLDOM",$J,C0XDOCID))
W !,$O(@ZDOM@(""),-1)," XML NODES PARSED"
; -- populate the metagraph to point to the graph with status unfinished
S METAS=$$ANONS ; GET AN ANONOMOUS RANDOM SUBJECT
I '$D(ZMETA) S ZMETA="_:G"_$$LKY9 ; RANDOM GRAPH NAME FOR METAGRAPH
D ADD(ZMETA,METAS,"fmts:about",ZGRF,FARY) ; POINT THE META TO THE GRAPH
D ADD(ZMETA,METAS,"fmts:status","unfinished",FARY) ; mark as unfinished
;S C0XDATE=$$FMDTOUTC^C0CUTIL($$NOW^XLFDT,"DT")
S C0XDATE=$$NOW^XLFDT
D ADD(ZMETA,METAS,"fmts:dateTime",C0XDATE,FARY)
D UPDIE(.C0XFDA) ; commit the metagraph changes to the triple store
; --
; -- pull out the vocabularies in the RDF statement. marked with xmlns:
; -- put them in a local variable for quick reference
; -- TODO: create a graph for vocabularies and validate incoming against it
;
S C0XVOC=""
N ZI,ZJ,ZK S ZI=""
F S ZI=$O(@ZDOM@(1,"A",ZI)) Q:ZI="" D ; FOR EACH xmlns
. S ZVOC=$P(ZI,"xmlns:",2)
. I ZVOC'="" S C0XVOC(ZVOC)=$G(@ZDOM@(1,"A",ZI))
;W !,"VOCABS:" ZWR C0XVOC
;
; -- look for children called rdf:Description. quit if none. not an rdf file
;
S ZI=$O(@ZDOM@(1,"C",""))
I $G(@ZDOM@(1,"C",ZI))'="rdf:Description" D Q ; not an rdf file
. W !,"Error. Not an RDF file. Cannot process."
;
; -- now process the rdf description children
;
S ZI=""
S (C0XSUB,C0XPRE,C0XOBJ)="" ; INITIALIZE subject, object and predicate
F S ZI=$O(@ZDOM@(1,"C",ZI)) Q:ZI="" D ;
. ; -- we are skipping any child that is not rdf:Description
. ; -- TODO: check to see if this is right in general
. ;
. IF $G(@ZDOM@(1,"C",ZI))'="rdf:Description" D Q ;
. . W !,"SKIPPING NODE: ",ZI
. ; -- now looking for the subject for the triples
. S ZX=$G(@ZDOM@(ZI,"A","rdf:about"))
. I ZX'="" D ; we have the subject
. . ;W " about: ",ZX
. . S C0XSUB=ZX
. E D ;
. . S ZX=$G(@ZDOM@(ZI,"A","rdf:nodeID")) ; node id is another style of subject
. . I ZX'="" D ;
. . . S C0XSUB=ZX
. I C0XSUB="" S C0XSUB=$$ANONS ; DEFAULT TO BLANK SUBJECT
. ;
. ; -- we now have the subject. the children of this node have the rest
. ;
. S ZJ="" ; for the children of the rdf:Description nodes
. F S ZJ=$O(@ZDOM@(ZI,"C",ZJ)) Q:ZJ="" D ; for each child
. . S C0XPRE=@ZDOM@(ZJ) ; the predicate without a prefix
. . S ZX=$G(@ZDOM@(ZJ,"A","xmlns")) ; name space
. . I ZX'="" S C0XPRE=ZX_C0XPRE ; add the namespace prefix
. . I C0XPRE[":" D ; expand using vocabulary
. . . N ZB,ZA
. . . S ZB=$P(C0XPRE,":",1)
. . . S ZA=$P(C0XPRE,":",2)
. . . I $G(C0XVOC(ZB))'="" D ;
. . . . S C0XPRE=C0XVOC(ZB)_ZA ; expanded
. . S ZY=$G(@ZDOM@(ZJ,"A","rdf:resource")) ; potential object
. . I ZY'="" D Q ;
. . . S C0XOBJ=ZY ; object
. . . D ADD(ZGRF,C0XSUB,C0XPRE,C0XOBJ) ; finally. our first real triple
. . ; -- this is an else because of the quit above
. . S ZX=$G(@ZDOM@(ZJ,"A","rdf:nodeID")) ; fishing for nodeId object
. . I ZX'="" D Q ; got one
. . . S C0XOBJ=ZX ; we are using the incoming nodeIDs as object/subject
. . . ; without change... this could be foolish .. look at it again later
. . . D ADD(ZGRF,C0XSUB,C0XPRE,C0XOBJ) ; go for it and add a node
. . S C0XOBJ=$G(@ZDOM@(ZJ,"T",1)) ; hopefully an object is here
. . I C0XOBJ="" D Q ; not a happy situation
. . . W !,"ERROR, NO OBJECT FOUND FOR NODE: ",ZJ
. . D ADD(ZGRF,C0XSUB,C0XPRE,C0XOBJ) ; go for it and add a node
W !,"INSERTING ",C0XCNT," TRIPLES"
D UPDIE(.C0XFDA) ; commit the updates to the file
; next, mark the graph as finished
S C0XEND=$$NOW^XLFDT
W !," ENDED AT: ",C0XEND
S C0XDIFF=$$FMDIFF^XLFDT(C0XEND,C0XSTART,2)
W !," ELAPSED TIME: ",C0XDIFF," SECONDS"
W !," APPROXIMATELY ",$P(C0XCNT/C0XDIFF,".")," TRIPLES PER SECOND"
Q
;
SHOW(ZN) ;
ZWR ^TMP("MXMLDOM",$J,1,ZN,*)
Q
;
ANONS() ; RETURNS AN ANONOMOUS SUBJECT
Q "_S:"_$$LKY9
;
NEWG(NGRAPH,NMETA) ; CREATES A NEW META GRAPH, MARKS IT AS UNFINISHED
; THEN CREATES A NEW GRAPH AND POINTS THE METAGRAPH TO IT
; NGRAPH AND NMETA ARE PASSED BY REFERENCE AND ARE THE RETURN
S NGRAPH="G"_$$LKY9
S NMETA=NGRAPH_"A"
Q
;
ADD(ZG,ZS,ZP,ZO,FARY) ; ADD A TRIPLE TO THE TRIPLESTORE. ALL VALUES ARE TEXT
; THE FDA IS SET UP BUT THE FILES ARE NOT UPDATED. CALL UPDIE TO COMPLETE
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
D USEFARY(FARY)
I '$D(C0XCNT) S C0XCNT=0
N ZNODE
S ZNODE="N"_$$LKY17
N ZNARY ; GET READY TO CALL IENOFA
S ZNARY("ZG",ZG)=""
S ZNARY("ZS",ZS)=""
S ZNARY("ZP",ZP)=""
S ZNARY("ZO",ZO)=""
D IENOFA(.ZIENS,.ZNARY,FARY) ; RESOLVE/ADD STRINGS
;S ZGIEN=$$IENOF(ZG) ; LAYGO TO GET IEN
;S ZSIEN=$$IENOF(ZS)
;S ZPIEN=$$IENOF(ZP)
;S ZOIEN=$$IENOF(ZO)
;I $D(C0XFDA) D UPDIE ; ADD THE STRINGS IF NEEDED
S C0XCNT=C0XCNT+1
S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.01)=ZNODE
S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.02)=$O(ZIENS("IEN","ZG",""))
S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.03)=$O(ZIENS("IEN","ZS",""))
S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.04)=$O(ZIENS("IEN","ZP",""))
S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.05)=$O(ZIENS("IEN","ZO",""))
; REMEMBER TO CALL UPDIE WHEN YOU'RE DONE
Q
;
LKY9() ;EXTRINIC THAT RETURNS A RANDOM 9 DIGIT NUMBER. USED FOR GENERATING
; UNIQUE NODE AND GRAPH NAMES
N ZN,ZI
S ZN=""
F ZI=1:1:9 D ;
. S ZN=ZN_$R(10)
Q ZN
;
LKY17() ;EXTRINIC THAT RETURNS A RANDOM 9 DIGIT NUMBER. USED FOR GENERATING
; UNIQUE NODE AND GRAPH NAMES
N ZN,ZI
S ZN=""
F ZI=1:1:17 D ;
. S ZN=ZN_$R(10)
Q ZN
;
IENOF(ZSTRING,FARY) ; EXTRINSIC WHICH RETURNS THE IEN OF ZS IN THE STRINGS FILE
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
N ZIEN
S ZIEN=$O(@C0XSN@("B",ZSTRING,""))
I ZIEN="" D ;
. S C0XFDA2(C0XSFN,"+1,",.01)=ZSTRING
. D UPDIE(.C0XFDA2)
. S ZIEN=$O(@C0XSN@("B",ZSTRING,""))
. K C0XFDA2
Q ZIEN
;
IENOFA(ZOUTARY,ZINARY,FARY) ; RESOLVE STRINGS TO IEN IN STRINGS FILE
; OR ADD THEM IF
; MISSING. ZINARY AND ZOUTARY ARE PASSED BY REFERENCE
; ZINARY LOOKS LIKE ZINARY("VAR","VAL")=""
; RETURNS IN ZOUTARY OF THE FORM ZOUTARY("IEN","VAR",IEN)=""
I '$D(FARY) D ;
. D INITFARY("C0XFARY")
. S FARY="C0XFARY"
K ZOUTARY ; START WITH CLEAN RESULTS
K C0XFDA2 ; USE A SEPARATE FDA FOR THIS
N ZI S ZI=""
N ZV,ZIEN
N ZCNT S ZCNT=0
F S ZI=$O(ZINARY(ZI)) Q:ZI="" D ; LOOK FOR MISSING STRINGS
. S ZV=$O(ZINARY(ZI,""))
. I $O(@C0XSN@("B",ZV,""))="" D ;
. . S ZCNT=ZCNT+1
. . S C0XFDA2(C0XSFN,"+"_ZCNT_",",.01)=ZV
I $D(C0XFDA2) D ;
. D UPDIE(.C0XFDA2) ; ADD MISSING STRINGS
. K C0XFDA2 ; CLEAN UP
F S ZI=$O(ZINARY(ZI)) Q:ZI="" D ; NOT GET ALL IENS
. S ZV=$O(ZINARY(ZI,""))
. S ZIEN=$O(@C0XSN@("B",ZV,"")) ; THEY SHOULD BE THERE NOW
. I ZIEN="" D ;
. . W !,"ERROR ADDING STRING: ",ZV
. . B
. S ZOUTARY("IEN",ZI,ZIEN)=""
Q
;
UPDIE(ZFDA) ; INTERNAL ROUTINE TO CALL UPDATE^DIE AND CHECK FOR ERRORS
; ZFDA IS PASSED BY REFERENCE
;ZWR ZFDA
;B
K ZERR
D CLEAN^DILF
D UPDATE^DIE("","ZFDA","","ZERR")
I $D(ZERR) S ZZERR=ZZERR ; ZZERR DOESN'T EXIST,
; INVOKE THE ERROR TRAP IF TASKED
;. W "ERROR",!
;. ZWR ZERR
;. B
K ZFDA
Q
;

250
p/C0XTEST.m
View File

@ -1,125 +1,125 @@
C0XTEST ; GPL - Fileman Triples bulk load tester ;11/6/11 17:05
;;0.1;C0X;nopatch;noreleasedate;Build 1
;Copyright 2011 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;
;This program is free software; you can redistribute it and/or modify
;it under the terms of the GNU General Public License as published by
;the Free Software Foundation; either version 2 of the License, or
;(at your option) any later version.
;
;This program is distributed in the hope that it will be useful,
;but WITHOUT ANY WARRANTY; without even the implied warranty of
;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;GNU General Public License for more details.
;
;You should have received a copy of the GNU General Public License along
;with this program; if not, write to the Free Software Foundation, Inc.,
;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
;
Q
;
EN ; run the test
;
k C0XFDA ; clear the node variable
i '$d(^C0X(101,0)) d ; global doesn't exist
. s ^C0X(101,0)="C0X TRIPLE^172.101^1^1"
n zg
S zg="_:G"_$$LKY9 ; all nodes are in the same graph
n zi
f zi=1:1:10000 d ; try a test of 10000 nodes
. s C0XFDA(172.101,zi,.01)="N"_$$LKY17 ; node name
. s C0XFDA(172.101,zi,.02)=zg
. s C0XFDA(172.101,zi,.03)=$R(100000)
. s C0XFDA(172.101,zi,.04)=$R(100000)
. s C0XFDA(172.101,zi,.05)=$R(100000)
S C0XST=$$NOW^XLFDT ; start of the insertion test
W !,"INSERTION STARTS AT ",C0XST,!
d BULKLOAD(.C0XFDA)
s C0XEND=$$NOW^XLFDT ; end of the insertion test
W !,"INSERTION ENDS AT ",C0XEND
S C0XDIFF=$$FMDIFF^XLFDT(C0XEND,C0XST,2)
W !," ELAPSED TIME: ",C0XDIFF," SECONDS"
W !," APPROXIMATELY ",$P(10000/C0XDIFF,".")," NODES PER SECOND"
q
;
LKY9() ;EXTRINIC THAT RETURNS A RANDOM 9 DIGIT NUMBER. USED FOR GENERATING
; UNIQUE NODE AND GRAPH NAMES
N ZN,ZI
S ZN=""
F ZI=1:1:9 D ;
. S ZN=ZN_$R(10)
Q ZN
;
LKY17() ;EXTRINIC THAT RETURNS A RANDOM 9 DIGIT NUMBER. USED FOR GENERATING
; UNIQUE NODE AND GRAPH NAMES
N ZN,ZI
S ZN=""
F ZI=1:1:17 D ;
. S ZN=ZN_$R(10)
Q ZN
;
BULKLOAD(ZBFDA) ; BULK LOADER FOR LOADING TRIPLES INTO FILE 172.101
; USING GLOBAL SETS INSTEAD OF UPDATE^DIE
; QUITS IF FILE IS NOT 172.101
; EXPECTS AN FDA WITHOUT STRINGS FOR THE IENS, STARTING AT 1
; QUITS IF FIRST ENTRY IS NOT IENS 1
; ASSUMES THAT THE LAST IENS IS THE COUNT OF ENTRIES
; ZBFDA IS PASSED BY REFERENCE
;
; -- reserves a block of iens from file 172.101 by locking the zero node
; -- ^C0X(101,0) and adding the count of entries to piece 2 and 3
; -- then unlocking to minimize the duration of the lock
;
W !,"USING BULKLOAD"
I '$D(ZBFDA) Q ; EMPTY FDA
I $O(ZBFDA(""))'=172.101 Q ; WRONG FILE
N ZCNT,ZP3,ZP4
; -- find the number of nodes to insert
S ZCNT=$O(ZBFDA(172.101,""),-1)
I ZCNT="" D Q ;
. W !,"ERROR IN BULK LOAD - INVALID NODE COUNT"
. B
; -- lock the zero node and reserve a block of iens to insert
W !,"LOCKING ZERO NODE"
LOCK +^C0X(101,0)
S ZP3=$P(^C0X(101,0),U,3)
S ZP4=$P(^C0X(101,0),U,4)
S $P(^C0X(101,0),U,3)=ZP3+ZCNT+1
S $P(^C0X(101,0),U,4)=ZP4+ZCNT+1
LOCK -^C0X(101,0)
N ZI,ZN,ZG,ZS,ZP,ZO,ZIEN,ZBASE
S ZBASE=ZP3 ; the last ien in the file
W !,"ZERO NODE UNLOCKED, IENS RESERVED=",ZCNT
W !,$$NOW^XLFDT
S ZI=""
F S ZI=$O(ZBFDA(172.101,ZI)) Q:ZI="" D ;
. S ZN=$G(ZBFDA(172.101,ZI,.01)) ; node name
. I ZN="" D BLKERR Q ;
. S ZG=$G(ZBFDA(172.101,ZI,.02)) ; graph pointer
. I ZG="" D BLKERR Q ;
. S ZS=$G(ZBFDA(172.101,ZI,.03)) ; subject pointer
. I ZS="" D BLKERR Q ;
. S ZP=$G(ZBFDA(172.101,ZI,.04)) ; predicate pointer
. I ZP="" D BLKERR Q ;
. S ZO=$G(ZBFDA(172.101,ZI,.05)) ; object pointer
. I ZO="" D BLKERR Q ;
. S ZIEN=ZI+ZBASE ; the new ien
. S ^C0X(101,ZIEN,0)=ZN_U_ZG_U_ZS_U_ZP_U_ZO ; set the zero node
. S ^C0X(101,"B",ZN,ZIEN)="" ; the B index
. S ^C0X(101,"G",ZG,ZIEN)="" ; the G for Graph index
. S ^C0X(101,"SPO",ZS,ZP,ZO)=""
. S ^C0X(101,"SOP",ZS,ZO,ZP)=""
. S ^C0X(101,"OPS",ZO,ZP,ZS)=""
. S ^C0X(101,"OSP",ZO,ZS,ZP)=""
. S ^C0X(101,"GOPS",ZG,ZO,ZP,ZS)=""
. S ^C0X(101,"GOSP",ZG,ZO,ZS,ZP)=""
. S ^C0X(101,"GPSO",ZG,ZP,ZS,ZO)=""
. S ^C0X(101,"GSPO",ZG,ZS,ZP,ZO)=""
Q
;
BLKERR ;
W !,"ERROR IN BULK LOAD",! ZWR ZBFDA(ZI)
B
Q
;
C0XTEST ; GPL - Fileman Triples bulk load tester ;11/6/11 17:05
;;0.1;C0X;nopatch;noreleasedate;Build 5
;Copyright 2011 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;
;This program is free software; you can redistribute it and/or modify
;it under the terms of the GNU General Public License as published by
;the Free Software Foundation; either version 2 of the License, or
;(at your option) any later version.
;
;This program is distributed in the hope that it will be useful,
;but WITHOUT ANY WARRANTY; without even the implied warranty of
;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;GNU General Public License for more details.
;
;You should have received a copy of the GNU General Public License along
;with this program; if not, write to the Free Software Foundation, Inc.,
;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
;
Q
;
EN ; run the test
;
k C0XFDA ; clear the node variable
i '$d(^C0X(101,0)) d ; global doesn't exist
. s ^C0X(101,0)="C0X TRIPLE^172.101^1^1"
n zg
S zg="_:G"_$$LKY9 ; all nodes are in the same graph
n zi
f zi=1:1:100000 d ; try a test of 10000 nodes
. s C0XFDA(172.101,zi,.01)="N"_$$LKY17 ; node name
. s C0XFDA(172.101,zi,.02)=zg
. s C0XFDA(172.101,zi,.03)=$R(100000)
. s C0XFDA(172.101,zi,.04)=$R(100000)
. s C0XFDA(172.101,zi,.05)=$R(100000)
S C0XST=$$NOW^XLFDT ; start of the insertion test
W !,"INSERTION STARTS AT ",C0XST,!
d BULKLOAD(.C0XFDA)
s C0XEND=$$NOW^XLFDT ; end of the insertion test
W !,"INSERTION ENDS AT ",C0XEND
S C0XDIFF=$$FMDIFF^XLFDT(C0XEND,C0XST,2)
W !," ELAPSED TIME: ",C0XDIFF," SECONDS"
I C0XDIFF>0 W !," APPROXIMATELY ",$P(100000/C0XDIFF,".")," NODES PER SECOND"
q
;
LKY9() ;EXTRINIC THAT RETURNS A RANDOM 9 DIGIT NUMBER. USED FOR GENERATING
; UNIQUE NODE AND GRAPH NAMES
N ZN,ZI
S ZN=""
F ZI=1:1:9 D ;
. S ZN=ZN_$R(10)
Q ZN
;
LKY17() ;EXTRINIC THAT RETURNS A RANDOM 9 DIGIT NUMBER. USED FOR GENERATING
; UNIQUE NODE AND GRAPH NAMES
N ZN,ZI
S ZN=""
F ZI=1:1:17 D ;
. S ZN=ZN_$R(10)
Q ZN
;
BULKLOAD(ZBFDA) ; BULK LOADER FOR LOADING TRIPLES INTO FILE 172.101
; USING GLOBAL SETS INSTEAD OF UPDATE^DIE
; QUITS IF FILE IS NOT 172.101
; EXPECTS AN FDA WITHOUT STRINGS FOR THE IENS, STARTING AT 1
; QUITS IF FIRST ENTRY IS NOT IENS 1
; ASSUMES THAT THE LAST IENS IS THE COUNT OF ENTRIES
; ZBFDA IS PASSED BY REFERENCE
;
; -- reserves a block of iens from file 172.101 by locking the zero node
; -- ^C0X(101,0) and adding the count of entries to piece 2 and 3
; -- then unlocking to minimize the duration of the lock
;
W !,"USING BULKLOAD"
I '$D(ZBFDA) Q ; EMPTY FDA
I $O(ZBFDA(""))'=172.101 Q ; WRONG FILE
N ZCNT,ZP3,ZP4
; -- find the number of nodes to insert
S ZCNT=$O(ZBFDA(172.101,""),-1)
I ZCNT="" D Q ;
. W !,"ERROR IN BULK LOAD - INVALID NODE COUNT"
. B
; -- lock the zero node and reserve a block of iens to insert
W !,"LOCKING ZERO NODE"
LOCK +^C0X(101,0)
S ZP3=$P(^C0X(101,0),U,3)
S ZP4=$P(^C0X(101,0),U,4)
S $P(^C0X(101,0),U,3)=ZP3+ZCNT+1
S $P(^C0X(101,0),U,4)=ZP4+ZCNT+1
LOCK -^C0X(101,0)
N ZI,ZN,ZG,ZS,ZP,ZO,ZIEN,ZBASE
S ZBASE=ZP3 ; the last ien in the file
W !,"ZERO NODE UNLOCKED, IENS RESERVED=",ZCNT
W !,$$NOW^XLFDT
S ZI=""
F S ZI=$O(ZBFDA(172.101,ZI)) Q:ZI="" D ;
. S ZN=$G(ZBFDA(172.101,ZI,.01)) ; node name
. I ZN="" D BLKERR Q ;
. S ZG=$G(ZBFDA(172.101,ZI,.02)) ; graph pointer
. I ZG="" D BLKERR Q ;
. S ZS=$G(ZBFDA(172.101,ZI,.03)) ; subject pointer
. I ZS="" D BLKERR Q ;
. S ZP=$G(ZBFDA(172.101,ZI,.04)) ; predicate pointer
. I ZP="" D BLKERR Q ;
. S ZO=$G(ZBFDA(172.101,ZI,.05)) ; object pointer
. I ZO="" D BLKERR Q ;
. S ZIEN=ZI+ZBASE ; the new ien
. S ^C0X(101,ZIEN,0)=ZN_U_ZG_U_ZS_U_ZP_U_ZO ; set the zero node
. S ^C0X(101,"B",ZN,ZIEN)="" ; the B index
. S ^C0X(101,"G",ZG,ZIEN)="" ; the G for Graph index
. S ^C0X(101,"SPO",ZS,ZP,ZO)=""
. S ^C0X(101,"SOP",ZS,ZO,ZP)=""
. S ^C0X(101,"OPS",ZO,ZP,ZS)=""
. S ^C0X(101,"OSP",ZO,ZS,ZP)=""
. S ^C0X(101,"GOPS",ZG,ZO,ZP,ZS)=""
. S ^C0X(101,"GOSP",ZG,ZO,ZS,ZP)=""
. S ^C0X(101,"GPSO",ZG,ZP,ZS,ZO)=""
. S ^C0X(101,"GSPO",ZG,ZS,ZP,ZO)=""
Q
;
BLKERR ;
W !,"ERROR IN BULK LOAD",! ZWR ZBFDA(ZI)
B
Q
;