diff --git a/p/C0SDEM.m b/p/C0SDEM.m
index 1689970..c6971c3 100644
--- a/p/C0SDEM.m
+++ b/p/C0SDEM.m
@@ -1,289 +1,289 @@
-C0SDEM ; GPL - Smart Demographics Processing ;2/22/12 17:05
- ;;0.1;C0S;nopatch;noreleasedate;Build 2
- ;Copyright 2012 George Lilly. Licensed under the terms of the GNU
- ;General Public License See attached copy of the License.
- ;
- ;This program is free software; you can redistribute it and/or modify
- ;it under the terms of the GNU General Public License as published by
- ;the Free Software Foundation; either version 2 of the License, or
- ;(at your option) any later version.
- ;
- ;This program is distributed in the hope that it will be useful,
- ;but WITHOUT ANY WARRANTY; without even the implied warranty of
- ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- ;GNU General Public License for more details.
- ;
- ;You should have received a copy of the GNU General Public License along
- ;with this program; if not, write to the Free Software Foundation, Inc.,
- ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
- ;
- Q
- ;
- ;
- ;
- ;
- ;
- ;
- ;
- ; Bob
- ; J
- ; Odenkirk
- ;
- ;
- ;
- ;
- ;
- ;
- ;
- ;
- ; 15 Main St
- ; Apt 2
- ; Wonderland
- ; OZ
- ; 54321
- ; USA
- ;
- ;
- ;
- ;
- ;
- ;
- ;
- ; 800-555-1212
- ;
- ;
- ;
- ;
- ;
- ;
- ; 800-555-1515
- ;
- ;
- ;
- ; male
- ; 1959-12-25
- ; bob.odenkirk@example.com
- ;
- ;
- ;
- ; My Hospital Record 2304575
- ; 2304575
- ; My Hospital Record
- ;
- ;
- ;
- ;
- ;
- ;
- ;
- ;
- ;
- ;
- ; Bob
- ; J
- ; Odenkirk
- ;
- ;
- ;
- ;
- ;
- ;
- ;
- ;
- ; 15 Main St
- ; Apt 2
- ; Wonderland
- ; OZ
- ; 54321
- ; USA
- ;
- ;
- ;
- ;
- ;
- ;
- ;
- ; 800-555-1212
- ;
- ;
- ;
- ;
- ;
- ;
- ; 800-555-1515
- ;
- ;
- ;
- ; male
- ; 1959-12-25
- ; bob.odenkirk@example.com
- ;
- ;
- ;
- ; My Hospital Record 2304575
- ; 2304575
- ; My Hospital Record
- ;
- ;
- ;
- ;
- ;
- ;G(1)="nodeID:25591^rdf:type^v:Home"
- ;G(2)="nodeID:25591^rdf:type^v:Pref"
- ;G(3)="nodeID:25591^rdf:type^v:Tel"
- ;G(4)="nodeID:25591^rdf:value^800-369-6403"
- ;G(5)="nodeID:25611^rdf:type^v:Name"
- ;G(6)="nodeID:25611^v:additional-name^N"
- ;G(7)="nodeID:25611^v:family-name^Brooks"
- ;G(8)="nodeID:25611^v:given-name^Brian"
- ;G(9)="nodeID:25622^dcterms:identifier^981968"
- ;G(10)="nodeID:25622^dcterms:title^My Hospital Record 981968"
- ;G(11)="nodeID:25622^rdf:type^sp:Code"
- ;G(12)="nodeID:25622^sp:system^My Hospital Record"
- ;G(13)="nodeID:25623^rdf:type^v:Address"
- ;G(14)="nodeID:25623^rdf:type^v:Home"
- ;G(15)="nodeID:25623^rdf:type^v:Pref"
- ;G(16)="nodeID:25623^v:locality^Bixby"
- ;G(17)="nodeID:25623^v:postal-code^74008"
- ;G(18)="nodeID:25623^v:region^OK"
- ;G(19)="nodeID:25623^v:street-address^82 Lake St"
- ;G(20)="smart:981968/demographics^foaf:gender^male"
- ;G(21)="smart:981968/demographics^rdf:type^sp:Demographics"
- ;G(22)="smart:981968/demographics^sp:belongsTo^smart:981968"
- ;G(23)="smart:981968/demographics^sp:medicalRecordNumber^nodeID:25622"
- ;G(24)="smart:981968/demographics^v:adr^nodeID:25623"
- ;G(25)="smart:981968/demographics^v:bday^1956-03-23"
- ;G(26)="smart:981968/demographics^v:email^brian.brooks@example.com"
- ;G(27)="smart:981968/demographics^v:n^nodeID:25611"
- ;G(28)="smart:981968/demographics^v:tel^nodeID:25591"
- Q
- ;
-PATIENT(GRTN,C0SARY) ; GRTN, passed by reference,
- ; is the return name of the graph created. "" if none
- ; C0SARY is passed in by reference and is the NHIN array of patient
- ;
- I $O(C0SARY("patient",""))="" D Q ;
- . I $D(DEBUG) W !,"No Patient array"
- . S GRTN=""
- S GRTN="" ; default to no patient
- N C0SGRF
- S C0SGRF="vistaSmart:"_ZPATID_"/patient"
- S ZPAT=C0SGRF ; subject is the same as the graph name
- I $D(DEBUG) W !,"Processing ",C0SGRF
- D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
- D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
- N FARY S FARY="C0XFARY"
- D USEFARY^C0XF2N(FARY)
- D VOCINIT^C0XUTIL
- ;
- N ZPN,ZR
- D STARTADD^C0XF2N
- ;
- ; First do the base demographic graph
- ;
- S ZPN=$NA(C0SARY("patient",1)) ; name of predicate array for this patient
- N SEX S SEX=$G(@ZPN@("gender@value"))
- I SEX="M" S SEX="male"
- I SEX="F" S SEX="female"
- S ZR("foaf:gender")=SEX
- S ZR("rdf:type")="sp:Demographics"
- S ZR("sp:belongsTo")=ZPAT
- N PATIENT
- S PATIENT=$P(ZPAT,"#",2)
- I $D(DEBUG) W !,"PROCESSING PATIENT ",PATIENT
- N NMREC S NMREC=$$ANONS^C0XF2N ; new anonomous subject for med rec graph
- S ZR("sp:medicalRecordNumber")=NMREC
- N NVADR S NVADR=$$ANONS^C0XF2N ; for address
- S ZR("v:adr")=NVADR
- N NNAME S NNAME=$$ANONS^C0XF2N ; for name
- S ZR("v:n")=NNAME
- N NTEL S NTEL=$$ANONS^C0XF2N ; for telephone
- I $D(@ZPN@("telecomList.telecom@value")) S ZR("v:tel")=NTEL ; only if exists
- N BDATE
- S ZX=""
- S ZX=$G(@ZPN@("dob@value")) ; date of birth in fileman format
- S BDATE=$$FMTE^XLFDT(ZX,"7D") ; ordered date
- S BDATE=$TR(BDATE,"/","-") ; change slashes to hyphens
- I BDATE="" S BDATE="UNKNOWN"
- N Z2,Z3
- S Z2=$P(BDATE,"-",2)
- S Z3=$P(BDATE,"-",3)
- I $L(Z2)=1 S $P(BDATE,"-",2)="0"_Z2
- I $L(Z3)=1 S $P(BDATE,"-",3)="0"_Z3
- S ZR("v:bday")=BDATE
- I $D(C0SVISTA) D ;
- . S ZR("vista:SSN")=$G(@ZPN@("ssn@value")) ; SSN
- . S ZR("vista:DFN")=$G(@ZPN@("id@value")) ; DFN
- D ADDINN^C0XF2N(C0SGRF,ZPAT,.ZR) ; create base graph
- K ZR
- ;
- ; create address sub-graph
- ;
- S ZR("rdf:type")="v:Address"
- S ZR("rdf:type")="v:Home"
- S ZR("v:locality")=$G(@ZPN@("address@city"))
- S ZR("v:postal-code")=$G(@ZPN@("address@postalCode"))
- S ZR("v:region")=$G(@ZPN@("address@stateProvince"))
- S ZR("v:street-address")=$G(@ZPN@("address@streetLine1"))
- D ADDINN^C0XF2N(C0SGRF,NVADR,.ZR) ; create the vcard address
- K ZR
- ;
- ; create medical record subgraph
- ;
- S ZR("dcterms:identifier")=$G(@ZPN@("id@value"))
- S ZR("dcterms:title")="VistA Patient Record "_ZR("dcterms:identifier")
- S ZR("rdf:type")="sp:Code"
- S ZR("sp:system")="VistA Patient Record"
- D ADDINN^C0XF2N(C0SGRF,NMREC,.ZR) ; create medical record graph
- K ZR
- ;
- ; create name subgraph
- ;
- N ZNF,ZNL,ZNM,ZNAM
- S ZR("rdf:type")="v:Name"
- S ZX=$G(@ZPN@("givenNames@value")) ; first name and middle names
- S ZNF=$P(ZX," ",1) ; first name is first piece
- S ZNM=$P(ZX," ",2) ; middle names are the rest
- S ZR("v:additional-name")=ZNM
- S ZR("v:family-name")=$G(@ZPN@("familyName@value"))
- S ZR("v:given-name")=ZNF
- D ADDINN^C0XF2N(C0SGRF,NNAME,.ZR) ; insert name graph
- K ZR
- ;
- ; create telephone subgraph
- ;
- D ;
- . S ZR("rdf:value")=$G(@ZPN@("telecomList.telecom@value"))
- . I ZR("rdf:value")="" Q ; telephone number missing, no subgraph
- . S ZR("rdf:type")="v:Tel"
- . D ADDINN^C0XF2N(C0SGRF,NTEL,.ZR)
- K ZR
- ;
- ; load the demographics graph and all sub graphs to the triple store
- ;
- D BULKLOAD^C0XF2N(.C0XFDA)
- S GRTN=C0SGRF
- Q
- ;
-AGES ; LIST ALL PATIENTS AND THEIR AGES
- N ZI S ZI=0
- F S ZI=$O(^DPT(ZI)) Q:+ZI=0 D ; FOR EVERY PATIENT
- . N ZDOB
- . S ZDOB=$$GET1^DIQ(2,ZI_",","DOB","I") ; FILEMAN DOB
- . N ZNAME
- . S ZNAME=$P(^DPT(ZI,0),U)
- . N ZSEX
- . S ZSEX=$$GET1^DIQ(2,ZI_",","SEX")
- . W !,"DFN:",ZI," ",ZNAME," AGE: ",+$$BRIEF^VWTIME(ZDOB)," YEAR OLD ",ZSEX
- Q
- ;
+C0SDEM ; GPL - Smart Demographics Processing ;2/22/12 17:05
+ ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
+ ;Copyright 2012 George Lilly. Licensed under the terms of the GNU
+ ;General Public License See attached copy of the License.
+ ;
+ ;This program is free software; you can redistribute it and/or modify
+ ;it under the terms of the GNU General Public License as published by
+ ;the Free Software Foundation; either version 2 of the License, or
+ ;(at your option) any later version.
+ ;
+ ;This program is distributed in the hope that it will be useful,
+ ;but WITHOUT ANY WARRANTY; without even the implied warranty of
+ ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ ;GNU General Public License for more details.
+ ;
+ ;You should have received a copy of the GNU General Public License along
+ ;with this program; if not, write to the Free Software Foundation, Inc.,
+ ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+ ;
+ Q
+ ;
+ ;
+ ;
+ ;
+ ;
+ ;
+ ;
+ ; Bob
+ ; J
+ ; Odenkirk
+ ;
+ ;
+ ;
+ ;
+ ;
+ ;
+ ;
+ ;
+ ; 15 Main St
+ ; Apt 2
+ ; Wonderland
+ ; OZ
+ ; 54321
+ ; USA
+ ;
+ ;
+ ;
+ ;
+ ;
+ ;
+ ;
+ ; 800-555-1212
+ ;
+ ;
+ ;
+ ;
+ ;
+ ;
+ ; 800-555-1515
+ ;
+ ;
+ ;
+ ; male
+ ; 1959-12-25
+ ; bob.odenkirk@example.com
+ ;
+ ;
+ ;
+ ; My Hospital Record 2304575
+ ; 2304575
+ ; My Hospital Record
+ ;
+ ;
+ ;
+ ;
+ ;
+ ;
+ ;
+ ;
+ ;
+ ;
+ ; Bob
+ ; J
+ ; Odenkirk
+ ;
+ ;
+ ;
+ ;
+ ;
+ ;
+ ;
+ ;
+ ; 15 Main St
+ ; Apt 2
+ ; Wonderland
+ ; OZ
+ ; 54321
+ ; USA
+ ;
+ ;
+ ;
+ ;
+ ;
+ ;
+ ;
+ ; 800-555-1212
+ ;
+ ;
+ ;
+ ;
+ ;
+ ;
+ ; 800-555-1515
+ ;
+ ;
+ ;
+ ; male
+ ; 1959-12-25
+ ; bob.odenkirk@example.com
+ ;
+ ;
+ ;
+ ; My Hospital Record 2304575
+ ; 2304575
+ ; My Hospital Record
+ ;
+ ;
+ ;
+ ;
+ ;
+ ;G(1)="nodeID:25591^rdf:type^v:Home"
+ ;G(2)="nodeID:25591^rdf:type^v:Pref"
+ ;G(3)="nodeID:25591^rdf:type^v:Tel"
+ ;G(4)="nodeID:25591^rdf:value^800-369-6403"
+ ;G(5)="nodeID:25611^rdf:type^v:Name"
+ ;G(6)="nodeID:25611^v:additional-name^N"
+ ;G(7)="nodeID:25611^v:family-name^Brooks"
+ ;G(8)="nodeID:25611^v:given-name^Brian"
+ ;G(9)="nodeID:25622^dcterms:identifier^981968"
+ ;G(10)="nodeID:25622^dcterms:title^My Hospital Record 981968"
+ ;G(11)="nodeID:25622^rdf:type^sp:Code"
+ ;G(12)="nodeID:25622^sp:system^My Hospital Record"
+ ;G(13)="nodeID:25623^rdf:type^v:Address"
+ ;G(14)="nodeID:25623^rdf:type^v:Home"
+ ;G(15)="nodeID:25623^rdf:type^v:Pref"
+ ;G(16)="nodeID:25623^v:locality^Bixby"
+ ;G(17)="nodeID:25623^v:postal-code^74008"
+ ;G(18)="nodeID:25623^v:region^OK"
+ ;G(19)="nodeID:25623^v:street-address^82 Lake St"
+ ;G(20)="smart:981968/demographics^foaf:gender^male"
+ ;G(21)="smart:981968/demographics^rdf:type^sp:Demographics"
+ ;G(22)="smart:981968/demographics^sp:belongsTo^smart:981968"
+ ;G(23)="smart:981968/demographics^sp:medicalRecordNumber^nodeID:25622"
+ ;G(24)="smart:981968/demographics^v:adr^nodeID:25623"
+ ;G(25)="smart:981968/demographics^v:bday^1956-03-23"
+ ;G(26)="smart:981968/demographics^v:email^brian.brooks@example.com"
+ ;G(27)="smart:981968/demographics^v:n^nodeID:25611"
+ ;G(28)="smart:981968/demographics^v:tel^nodeID:25591"
+ Q
+ ;
+PATIENT(GRTN,C0SARY) ; GRTN, passed by reference,
+ ; is the return name of the graph created. "" if none
+ ; C0SARY is passed in by reference and is the NHIN array of patient
+ ;
+ I $O(C0SARY("patient",""))="" D Q ;
+ . I $D(DEBUG) W !,"No Patient array"
+ . S GRTN=""
+ S GRTN="" ; default to no patient
+ N C0SGRF
+ S C0SGRF="vistaSmart:"_ZPATID_"/patient"
+ S ZPAT=C0SGRF ; subject is the same as the graph name
+ I $D(DEBUG) W !,"Processing ",C0SGRF
+ D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
+ D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
+ N FARY S FARY="C0XFARY"
+ D USEFARY^C0XF2N(FARY)
+ D VOCINIT^C0XUTIL
+ ;
+ N ZPN,ZR
+ D STARTADD^C0XF2N
+ ;
+ ; First do the base demographic graph
+ ;
+ S ZPN=$NA(C0SARY("patient",1)) ; name of predicate array for this patient
+ N SEX S SEX=$G(@ZPN@("gender@value"))
+ I SEX="M" S SEX="male"
+ I SEX="F" S SEX="female"
+ S ZR("foaf:gender")=SEX
+ S ZR("rdf:type")="sp:Demographics"
+ S ZR("sp:belongsTo")=ZPAT
+ N PATIENT
+ S PATIENT=$P(ZPAT,"#",2)
+ I $D(DEBUG) W !,"PROCESSING PATIENT ",PATIENT
+ N NMREC S NMREC=$$ANONS^C0XF2N ; new anonomous subject for med rec graph
+ S ZR("sp:medicalRecordNumber")=NMREC
+ N NVADR S NVADR=$$ANONS^C0XF2N ; for address
+ S ZR("v:adr")=NVADR
+ N NNAME S NNAME=$$ANONS^C0XF2N ; for name
+ S ZR("v:n")=NNAME
+ N NTEL S NTEL=$$ANONS^C0XF2N ; for telephone
+ I $D(@ZPN@("telecomList.telecom@value")) S ZR("v:tel")=NTEL ; only if exists
+ N BDATE
+ S ZX=""
+ S ZX=$G(@ZPN@("dob@value")) ; date of birth in fileman format
+ S BDATE=$$FMTE^XLFDT(ZX,"7D") ; ordered date
+ S BDATE=$TR(BDATE,"/","-") ; change slashes to hyphens
+ I BDATE="" S BDATE="UNKNOWN"
+ N Z2,Z3
+ S Z2=$P(BDATE,"-",2)
+ S Z3=$P(BDATE,"-",3)
+ I $L(Z2)=1 S $P(BDATE,"-",2)="0"_Z2
+ I $L(Z3)=1 S $P(BDATE,"-",3)="0"_Z3
+ S ZR("v:bday")=BDATE
+ I $D(C0SVISTA) D ;
+ . S ZR("vista:SSN")=$G(@ZPN@("ssn@value")) ; SSN
+ . S ZR("vista:DFN")=$G(@ZPN@("id@value")) ; DFN
+ D ADDINN^C0XF2N(C0SGRF,ZPAT,.ZR) ; create base graph
+ K ZR
+ ;
+ ; create address sub-graph
+ ;
+ S ZR("rdf:type")="v:Address"
+ S ZR("rdf:type")="v:Home"
+ S ZR("v:locality")=$G(@ZPN@("address@city"))
+ S ZR("v:postal-code")=$G(@ZPN@("address@postalCode"))
+ S ZR("v:region")=$G(@ZPN@("address@stateProvince"))
+ S ZR("v:street-address")=$G(@ZPN@("address@streetLine1"))
+ D ADDINN^C0XF2N(C0SGRF,NVADR,.ZR) ; create the vcard address
+ K ZR
+ ;
+ ; create medical record subgraph
+ ;
+ S ZR("dcterms:identifier")=$G(@ZPN@("id@value"))
+ S ZR("dcterms:title")="VistA Patient Record "_ZR("dcterms:identifier")
+ S ZR("rdf:type")="sp:Code"
+ S ZR("sp:system")="VistA Patient Record"
+ D ADDINN^C0XF2N(C0SGRF,NMREC,.ZR) ; create medical record graph
+ K ZR
+ ;
+ ; create name subgraph
+ ;
+ N ZNF,ZNL,ZNM,ZNAM
+ S ZR("rdf:type")="v:Name"
+ S ZX=$G(@ZPN@("givenNames@value")) ; first name and middle names
+ S ZNF=$P(ZX," ",1) ; first name is first piece
+ S ZNM=$P(ZX," ",2) ; middle names are the rest
+ S ZR("v:additional-name")=ZNM
+ S ZR("v:family-name")=$G(@ZPN@("familyName@value"))
+ S ZR("v:given-name")=ZNF
+ D ADDINN^C0XF2N(C0SGRF,NNAME,.ZR) ; insert name graph
+ K ZR
+ ;
+ ; create telephone subgraph
+ ;
+ D ;
+ . S ZR("rdf:value")=$G(@ZPN@("telecomList.telecom@value"))
+ . I ZR("rdf:value")="" Q ; telephone number missing, no subgraph
+ . S ZR("rdf:type")="v:Tel"
+ . D ADDINN^C0XF2N(C0SGRF,NTEL,.ZR)
+ K ZR
+ ;
+ ; load the demographics graph and all sub graphs to the triple store
+ ;
+ D BULKLOAD^C0XF2N(.C0XFDA)
+ S GRTN=C0SGRF
+ Q
+ ;
+AGES ; LIST ALL PATIENTS AND THEIR AGES
+ N ZI S ZI=0
+ F S ZI=$O(^DPT(ZI)) Q:+ZI=0 D ; FOR EVERY PATIENT
+ . N ZDOB
+ . S ZDOB=$$GET1^DIQ(2,ZI_",","DOB","I") ; FILEMAN DOB
+ . N ZNAME
+ . S ZNAME=$P(^DPT(ZI,0),U)
+ . N ZSEX
+ . S ZSEX=$$GET1^DIQ(2,ZI_",","SEX")
+ . W !,"DFN:",ZI," ",ZNAME," AGE: ",+$$BRIEF^VWTIME(ZDOB)," YEAR OLD ",ZSEX
+ Q
+ ;
diff --git a/p/C0SDOM.m b/p/C0SDOM.m
index 6b9f220..d2e9513 100644
--- a/p/C0SDOM.m
+++ b/p/C0SDOM.m
@@ -1,320 +1,320 @@
-C0SDOM ; GPL - Smart Container - DOM PROCESSING ROUTINES ;6/6/11 17:05
- ;;0.1;C0S;nopatch;noreleasedate;Build 2
- ;Copyright 2011,2012 George Lilly. Licensed under the terms of the GNU
- ;General Public License See attached copy of the License.
- ;
- ;This program is free software; you can redistribute it and/or modify
- ;it under the terms of the GNU General Public License as published by
- ;the Free Software Foundation; either version 2 of the License, or
- ;(at your option) any later version.
- ;
-
- ;This program is distributed in the hope that it will be useful,
- ;but WITHOUT ANY WARRANTY; without even the implied warranty of
- ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- ;GNU General Public License for more details.
- ;
- ;You should have received a copy of the GNU General Public License along
- ;with this program; if not, write to the Free Software Foundation, Inc.,
- ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
- ;
- Q
- ;
-DOMO(ZOID,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; RECURSIVE ROUTINE TO POPULATE
- ; THE XPATH INDEX ZXIDX, PASSED BY NAME
- ; THE XPATH ARRAY XPARY, PASSED BY NAME
- ; ZOID IS THE STARTING OID
- ; ZPATH IS THE STARTING XPATH, USUALLY "/"
- ; ZNUM IS THE MULTIPLE NUMBER [x], USUALLY NULL WHEN ON THE TOP NODE
- ; ZREDUX IS THE XPATH REDUCTION STRING, TAKEN OUT OF EACH XPATH IF PRESENT
- I $G(ZREDUX)="" S ZREDUX=""
- N NEWPATH,NARY ; NEWPATH IS AN XPATH NARY IS AN NHIN MUMPS ARRAY
- N NEWNUM S NEWNUM=""
- I $G(ZNUM)>0 S NEWNUM="["_ZNUM_"]"
- S NEWPATH=ZPATH_"/"_$$TAG(ZOID)_NEWNUM ; CREATE THE XPATH FOR THIS NODE
- I $G(ZREDUX)'="" D ; REDUX PROVIDED?
- . N GT S GT=$P(NEWPATH,ZREDUX,2)
- . I GT'="" S NEWPATH=GT
- S @ZXIDX@(NEWPATH)=ZOID ; ADD THE XPATH FOR THIS NODE TO THE XPATH INDEX
- N GA D ATT("GA",ZOID) ; GET ATTRIBUTES FOR THIS NODE
- I $D(GA) D ; PROCESS THE ATTRIBUTES
- . N ZI S ZI=""
- . F S ZI=$O(GA(ZI)) Q:ZI="" D ; FOR EACH ATTRIBUTE
- . . N ZP S ZP=NEWPATH_"@"_ZI ; PATH FOR ATTRIBUTE
- . . S @ZXPARY@(ZP)=GA(ZI) ; ADD THE ATTRIBUTE XPATH TO THE XP ARRAY
- . . I GA(ZI)'="" D ADDNARY(ZP,GA(ZI)) ; ADD THE NHIN ARRAY VALUE
- N GD D DATA("GD",ZOID) ; SEE IF THERE IS DATA FOR THIS NODE
- I $D(GD(2)) D ;
- . M @ZXPARY@(NEWPATH)=GD ; IF MULITPLE DATA MERGE TO THE ARRAY
- E I $D(GD(1)) D ;
- . S @ZXPARY@(NEWPATH)=GD(1) ; IF SINGLE VALUE, ADD TO ARRAY
- . I GD(1)'="" D ADDNARY(NEWPATH,GD(1)) ; ADD TO NHIN ARRAY
- N ZFRST S ZFRST=$$FIRST(ZOID) ; SET FIRST CHILD
- I ZFRST'=0 D ; THERE IS A CHILD
- . N ZNUM
- . N ZMULT S ZMULT=$$ISMULT(ZFRST) ; IS FIRST CHILD A MULTIPLE
- . D DOMO(ZFRST,NEWPATH,ZNARY,ZXIDX,ZXPARY,$S(ZMULT:1,1:""),ZREDUX) ; THE CHILD
- N GNXT S GNXT=$$NXTSIB(ZOID)
- I $$TAG(GNXT)'=$$TAG(ZOID) S ZNUM="" ; RESET COUNTING AFTER MULTIPLES
- I GNXT'=0 D ;
- . N ZMULT S ZMULT=$$ISMULT(GNXT) ; IS THE SIBLING A MULTIPLE?
- . I (ZNUM="")&(ZMULT) D ; SIBLING IS FIRST OF MULTIPLES
- . . N ZNUM S ZNUM=1 ;
- . . D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; DO NEXT SIB
- . E D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,$S(ZNUM>0:ZNUM+1,1:""),ZREDUX) ; SIB
- Q
- ;
-ADDNARY(ZXP,ZVALUE) ; ADD AN NHIN ARRAY VALUE TO ZNARY
- ;
- ; IF ZATT=1 THE ARRAY IS ADDED AS ATTRIBUTES
- ;
- N ZZI,ZZJ,ZZN
- S ZZI=$P(ZXP,"/",1) ; FIRST PIECE OF XPATH ARRAY
- I ZZI="" Q ; DON'T ADD THIS ONE .. PROBABLY THE //results NODE
- S ZZJ=$P(ZXP,ZZI_"/",2) ; REST OF XPATH ARRAY
- S ZZJ=$TR(ZZJ,"/",".") ; REPLACE / WITH .
- I ZZI'["]" D ; A SINGLETON
- . S ZZN=1
- E D ; THERE IS AN [x] OCCURANCE
- . S ZZN=$P($P(ZZI,"[",2),"]",1) ; PULL OUT THE OCCURANCE
- . S ZZI=$P(ZZI,"[",1) ; TAKE OUT THE [X]
- I ZZJ'="" D ; TIME TO ADD THE VALUE
- . S @ZNARY@(ZZI,ZZN,ZZJ)=ZVALUE
- Q
- ;
-PARSE(INXML,INDOC) ;CALL THE MXML PARSER ON INXML, PASSED BY NAME
- ; INDOC IS PASSED AS THE DOCUMENT NAME - DON'T KNOW WHERE TO STORE THIS NOW
- ; EXTRINSIC WHICH RETURNS THE DOCID ASSIGNED BY MXML
- ;Q $$EN^MXMLDOM(INXML)
- Q $$EN^MXMLDOM(INXML,"W")
- ;
-ISMULT(ZOID) ; RETURN TRUE IF ZOID IS ONE OF A MULTIPLE
- N ZN
- ;I $$TAG(ZOID)["entry" B
- S ZN=$$NXTSIB(ZOID)
- I ZN'="" Q $$TAG(ZOID)=$$TAG(ZN) ; IF TAG IS THE SAME AS NEXT SIB TAG
- Q 0
- ;
-FIRST(ZOID) ;RETURNS THE OID OF THE FIRST CHILD OF ZOID
- Q $$CHILD^MXMLDOM(C0SDOCID,ZOID)
- ;
-PARENT(ZOID) ;RETURNS THE OID OF THE PARENT OF ZOID
- Q $$PARENT^MXMLDOM(C0SDOCID,ZOID)
- ;
-ATT(RTN,NODE) ;GET ATTRIBUTES FOR ZOID
- S HANDLE=C0SDOCID
- K @RTN
- D GETTXT^MXMLDOM("A")
- Q
- ;
-TAG(ZOID) ; RETURNS THE XML TAG FOR THE NODE
- ;I ZOID=149 B ;GPLTEST
- N X,Y
- S Y=""
- S X=$G(C0SCBK("TAG")) ;IS THERE A CALLBACK FOR THIS ROUTINE
- I X'="" X X ; EXECUTE THE CALLBACK, SHOULD SET Y
- I Y="" S Y=$$NAME^MXMLDOM(C0SDOCID,ZOID)
- Q Y
- ;
-NXTSIB(ZOID) ; RETURNS THE NEXT SIBLING
- Q $$SIBLING^MXMLDOM(C0SDOCID,ZOID)
- ;
-DATA(ZT,ZOID) ; RETURNS DATA FOR THE NODE
- ;N ZT,ZN S ZT=""
- ;S C0SDOM=$NA(^TMP("MXMLDOM",$J,C0SDOCID))
- ;Q $G(@C0SDOM@(ZOID,"T",1))
- S ZN=$$TEXT^MXMLDOM(C0SDOCID,ZOID,ZT)
- Q
- ;
-OUTXML(ZRTN,INID,NO1ST) ; USES C0SMXMLB (MXMLBLD) TO OUTPUT XML FROM AN MXMLDOM
- ;
- S C0SDOCID=INID
- I '$D(NO1ST) S NO1ST=0 ; DO NOT SURPRESS THE 0 S ZPARNODE=PARENT ; WE HAVE BEEN PASSED A PARENT NODE ID
- E I $L($G(PARENT))>0 D ; TBD FIND THE PARENT IN THE DOM AND SET LEVEL
- . D STARTELE^MXMLDOM(PARENT) ; INSERT THE PARENT NODE
- . S ZPARNODE=1 ;
- ; WE NOW HAVE A HANDLE AND A PARENT NODE AND LEVEL HAS BEEN SET
- N ZEXARY
- D EXPAND("ZEXARY",INARY) ; EXPAND THE NHIN ARRAY
- D MAJOR("ZEXARY") ; PROCESS ALL THE NODES TO BE ADDED
- I $L($G(PARENT))>0 D ENDELE^MXMLDOM(PARENT) ; CLOSE OUT THE PARENT NODE
- Q HANDLE ; SUCCESS
- ;
-MAJOR(ZARY) ; RECURSIVE ROUTINE FOR INTERMEDIATE NODES
- N ZI S ZI=""
- N ZTAG
- F S ZI=$O(@ZARY@(ZI)) Q:ZI="" D ; FOR EACH SECTION
- . N ZELEADD S ZELEADD=0
- . I ZI["@" D ; END NODE HAS NO VALUE, ONLY ATTRIBUTES
- . . S ZTAG=$P(ZI,"@",1) ; PULL OUT THE TAG
- . . K ZATT ; CLEAR OUT LAST ONE
- . . M ZATT=@ZARY@(ZI,1) ; GET ATTRIBUTE ARRAY
- . . D STARTELE^MXMLDOM(ZTAG,.ZATT) ; ADD THE NODE
- . . S ZELEADD=1 ; FLAG TO NOT ADD THE ELEMENT TWICE
- . I $O(@ZARY@(ZI,""))="" D ;END NODE
- . . S ZTAG=ZI ; USE ZI FOR THE TAG
- . . I 'ZELEADD D STARTELE^MXMLDOM(ZTAG) ; ADD ELEMENT IF NOT THERE
- . . S ZELEADD=1 ; ADDED AN ELEMENT
- . . D CHAR^MXMLDOM($G(@ZARY@(ZI))) ; INSERT THE VALUE
- . I ZELEADD D Q ; NO MORE TO DO ON THIS LEVEL
- . . D ENDELE^MXMLDOM(ZTAG) ; CLOSE THE ELEMENT BEFORE LEAVING
- . N NEWARY ; INDENTED ARRAY
- . N ZN S ZN=0
- . F S ZN=$O(@ZARY@(ZI,ZN)) Q:ZN="" D ; FOR EACH MULTIPLE
- . . D STARTELE^MXMLDOM(ZI) ; ADD THE INTERMEDIATE TAG
- . . S NEWARY=$NA(@ZARY@(ZI,ZN)) ; INDENT THE ARRAY
- . . D MAJOR(NEWARY) ; RECURSE FOR INDENTED ARRAY
- . . D ENDELE^MXMLDOM(ZI) ; END THE INTERMEDIATE TAG
- Q
- ;
-EXPAND(ZZOUT,ZZIN) ; EXPANDS NHIN ARRAY FORMAT TO AN EXPANDED
- ; CONSISTENT FORMAT
- ; GNARY("patient",1,"facilities[2].facility@code")="050"
- ; becomes G2ARY("patient",1,"facilities",2,"facility@",1,"code")="050"
- ; for easier processing (this is fileman format genius)
- ; basically removes the dot notation from the strings
- ;
- N ZZI
- S ZZI=""
- F S ZZI=$O(@ZZIN@(ZZI)) Q:ZZI="" D ;
- . N ZZN S ZZN=0
- . F S ZZN=$O(@ZZIN@(ZZI,ZZN)) Q:ZZN="" D ;
- . . N ZZS S ZZS=""
- . . N GA ;PUSH STACK
- . . F S ZZS=$O(@ZZIN@(ZZI,ZZN,ZZS)) Q:ZZS="" D ;
- . . . K GA ; NEW STACK
- . . . D PUSH^C0SXPATH("GA",ZZI_"^"_ZZN) ; PUSH PARENT
- . . . N ZZV ; PLACE TO STASH THE VALUE
- . . . S ZZV=@ZZIN@(ZZI,ZZN,ZZS) ; VALUE
- . . . W !,"VALUE:",ZZV
- . . . N GK ; COUNTER
- . . . F GK=1:1:$L(ZZS,".") D ; FOR EACH INTERMEDIATE NODE
- . . . . N ZZN2 S ZZN2=1 ; DEFAULT IF NO [X]
- . . . . N GM S GM=$P(ZZS,".",GK) ; TAG
- . . . . I GM["[" D ; IT'S A MULTIPLE
- . . . . . S ZZN2=$P($P(GM,"[",2),"]",1) ; PULL OUT THE NUMBER
- . . . . . S GM=$P(GM,"[",1) ; PULL OUT THE TAG
- . . . . I GM["@" D ; IT'S GOT ATTRIBUTES
- . . . . . N GM2 S GM2=$P(GM,"@",2) ; PULLOUT THE ATTRIBUTE NAME
- . . . . . D PUSH^C0SXPATH("GA",$P(GM,"@",1)_"@"_"^"_ZZN2) ; PUSH THE TAG
- . . . . . D PUSH^C0SXPATH("GA",GM2_"^"_ZZN2)
- . . . . E D PUSH^C0SXPATH("GA",GM_"^"_ZZN2) ;
- . . . S GA(GA(0))=$P(GA(GA(0)),"^",1)_"^" ; GET RID OF THE LAST "1"
- . . . N GZI S GZI="" ; STRING FOR THE INDEX
- . . . F GK=1:1:GA(0) D ; TIME TO REVERSE POP THE TAGS
- . . . . S GM=$P(GA(GK),"^",1) ; THE TAG
- . . . . S ZZN2=$P(GA(GK),"^",2) ; THE NUMBER IF ANY
- . . . . I ZZN2="" S GZI=GZI_""""_GM_"""" ; FOR THE LAST ONE
- . . . . E S GZI=GZI_""""_GM_""""_","_ZZN2_"," ; FOR THE REST
- . . . S GZI2=ZZOUT_"("_GZI_")" ; INCLUDE THE ARRAY NAME
- . . . W !,GZI
- . . . S @GZI2=ZZV ; REMEMBER THE VALUE?
- Q
- ;
-NEWDOM() ; extrinsic which creates a new DOM and returns the HANDLE
- N CBK,SUCCESS,LEVEL,NODE,HANDLE
- K ^TMP("MXMLERR",$J)
- L +^TMP("MXMLDOM",$J):5
- E Q 0
- S HANDLE=$O(^TMP("MXMLDOM",$J,""),-1)+1,^(HANDLE)=""
- L -^TMP("MXMLDOM",$J)
- Q HANDLE
- ;
+C0SDOM ; GPL - Smart Container - DOM PROCESSING ROUTINES ;6/6/11 17:05
+ ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
+ ;Copyright 2011,2012 George Lilly. Licensed under the terms of the GNU
+ ;General Public License See attached copy of the License.
+ ;
+ ;This program is free software; you can redistribute it and/or modify
+ ;it under the terms of the GNU General Public License as published by
+ ;the Free Software Foundation; either version 2 of the License, or
+ ;(at your option) any later version.
+ ;
+
+ ;This program is distributed in the hope that it will be useful,
+ ;but WITHOUT ANY WARRANTY; without even the implied warranty of
+ ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ ;GNU General Public License for more details.
+ ;
+ ;You should have received a copy of the GNU General Public License along
+ ;with this program; if not, write to the Free Software Foundation, Inc.,
+ ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+ ;
+ Q
+ ;
+DOMO(ZOID,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; RECURSIVE ROUTINE TO POPULATE
+ ; THE XPATH INDEX ZXIDX, PASSED BY NAME
+ ; THE XPATH ARRAY XPARY, PASSED BY NAME
+ ; ZOID IS THE STARTING OID
+ ; ZPATH IS THE STARTING XPATH, USUALLY "/"
+ ; ZNUM IS THE MULTIPLE NUMBER [x], USUALLY NULL WHEN ON THE TOP NODE
+ ; ZREDUX IS THE XPATH REDUCTION STRING, TAKEN OUT OF EACH XPATH IF PRESENT
+ I $G(ZREDUX)="" S ZREDUX=""
+ N NEWPATH,NARY ; NEWPATH IS AN XPATH NARY IS AN NHIN MUMPS ARRAY
+ N NEWNUM S NEWNUM=""
+ I $G(ZNUM)>0 S NEWNUM="["_ZNUM_"]"
+ S NEWPATH=ZPATH_"/"_$$TAG(ZOID)_NEWNUM ; CREATE THE XPATH FOR THIS NODE
+ I $G(ZREDUX)'="" D ; REDUX PROVIDED?
+ . N GT S GT=$P(NEWPATH,ZREDUX,2)
+ . I GT'="" S NEWPATH=GT
+ S @ZXIDX@(NEWPATH)=ZOID ; ADD THE XPATH FOR THIS NODE TO THE XPATH INDEX
+ N GA D ATT("GA",ZOID) ; GET ATTRIBUTES FOR THIS NODE
+ I $D(GA) D ; PROCESS THE ATTRIBUTES
+ . N ZI S ZI=""
+ . F S ZI=$O(GA(ZI)) Q:ZI="" D ; FOR EACH ATTRIBUTE
+ . . N ZP S ZP=NEWPATH_"@"_ZI ; PATH FOR ATTRIBUTE
+ . . S @ZXPARY@(ZP)=GA(ZI) ; ADD THE ATTRIBUTE XPATH TO THE XP ARRAY
+ . . I GA(ZI)'="" D ADDNARY(ZP,GA(ZI)) ; ADD THE NHIN ARRAY VALUE
+ N GD D DATA("GD",ZOID) ; SEE IF THERE IS DATA FOR THIS NODE
+ I $D(GD(2)) D ;
+ . M @ZXPARY@(NEWPATH)=GD ; IF MULITPLE DATA MERGE TO THE ARRAY
+ E I $D(GD(1)) D ;
+ . S @ZXPARY@(NEWPATH)=GD(1) ; IF SINGLE VALUE, ADD TO ARRAY
+ . I GD(1)'="" D ADDNARY(NEWPATH,GD(1)) ; ADD TO NHIN ARRAY
+ N ZFRST S ZFRST=$$FIRST(ZOID) ; SET FIRST CHILD
+ I ZFRST'=0 D ; THERE IS A CHILD
+ . N ZNUM
+ . N ZMULT S ZMULT=$$ISMULT(ZFRST) ; IS FIRST CHILD A MULTIPLE
+ . D DOMO(ZFRST,NEWPATH,ZNARY,ZXIDX,ZXPARY,$S(ZMULT:1,1:""),ZREDUX) ; THE CHILD
+ N GNXT S GNXT=$$NXTSIB(ZOID)
+ I $$TAG(GNXT)'=$$TAG(ZOID) S ZNUM="" ; RESET COUNTING AFTER MULTIPLES
+ I GNXT'=0 D ;
+ . N ZMULT S ZMULT=$$ISMULT(GNXT) ; IS THE SIBLING A MULTIPLE?
+ . I (ZNUM="")&(ZMULT) D ; SIBLING IS FIRST OF MULTIPLES
+ . . N ZNUM S ZNUM=1 ;
+ . . D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; DO NEXT SIB
+ . E D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,$S(ZNUM>0:ZNUM+1,1:""),ZREDUX) ; SIB
+ Q
+ ;
+ADDNARY(ZXP,ZVALUE) ; ADD AN NHIN ARRAY VALUE TO ZNARY
+ ;
+ ; IF ZATT=1 THE ARRAY IS ADDED AS ATTRIBUTES
+ ;
+ N ZZI,ZZJ,ZZN
+ S ZZI=$P(ZXP,"/",1) ; FIRST PIECE OF XPATH ARRAY
+ I ZZI="" Q ; DON'T ADD THIS ONE .. PROBABLY THE //results NODE
+ S ZZJ=$P(ZXP,ZZI_"/",2) ; REST OF XPATH ARRAY
+ S ZZJ=$TR(ZZJ,"/",".") ; REPLACE / WITH .
+ I ZZI'["]" D ; A SINGLETON
+ . S ZZN=1
+ E D ; THERE IS AN [x] OCCURANCE
+ . S ZZN=$P($P(ZZI,"[",2),"]",1) ; PULL OUT THE OCCURANCE
+ . S ZZI=$P(ZZI,"[",1) ; TAKE OUT THE [X]
+ I ZZJ'="" D ; TIME TO ADD THE VALUE
+ . S @ZNARY@(ZZI,ZZN,ZZJ)=ZVALUE
+ Q
+ ;
+PARSE(INXML,INDOC) ;CALL THE MXML PARSER ON INXML, PASSED BY NAME
+ ; INDOC IS PASSED AS THE DOCUMENT NAME - DON'T KNOW WHERE TO STORE THIS NOW
+ ; EXTRINSIC WHICH RETURNS THE DOCID ASSIGNED BY MXML
+ ;Q $$EN^MXMLDOM(INXML)
+ Q $$EN^MXMLDOM(INXML,"W")
+ ;
+ISMULT(ZOID) ; RETURN TRUE IF ZOID IS ONE OF A MULTIPLE
+ N ZN
+ ;I $$TAG(ZOID)["entry" B
+ S ZN=$$NXTSIB(ZOID)
+ I ZN'="" Q $$TAG(ZOID)=$$TAG(ZN) ; IF TAG IS THE SAME AS NEXT SIB TAG
+ Q 0
+ ;
+FIRST(ZOID) ;RETURNS THE OID OF THE FIRST CHILD OF ZOID
+ Q $$CHILD^MXMLDOM(C0SDOCID,ZOID)
+ ;
+PARENT(ZOID) ;RETURNS THE OID OF THE PARENT OF ZOID
+ Q $$PARENT^MXMLDOM(C0SDOCID,ZOID)
+ ;
+ATT(RTN,NODE) ;GET ATTRIBUTES FOR ZOID
+ S HANDLE=C0SDOCID
+ K @RTN
+ D GETTXT^MXMLDOM("A")
+ Q
+ ;
+TAG(ZOID) ; RETURNS THE XML TAG FOR THE NODE
+ ;I ZOID=149 B ;GPLTEST
+ N X,Y
+ S Y=""
+ S X=$G(C0SCBK("TAG")) ;IS THERE A CALLBACK FOR THIS ROUTINE
+ I X'="" X X ; EXECUTE THE CALLBACK, SHOULD SET Y
+ I Y="" S Y=$$NAME^MXMLDOM(C0SDOCID,ZOID)
+ Q Y
+ ;
+NXTSIB(ZOID) ; RETURNS THE NEXT SIBLING
+ Q $$SIBLING^MXMLDOM(C0SDOCID,ZOID)
+ ;
+DATA(ZT,ZOID) ; RETURNS DATA FOR THE NODE
+ ;N ZT,ZN S ZT=""
+ ;S C0SDOM=$NA(^TMP("MXMLDOM",$J,C0SDOCID))
+ ;Q $G(@C0SDOM@(ZOID,"T",1))
+ S ZN=$$TEXT^MXMLDOM(C0SDOCID,ZOID,ZT)
+ Q
+ ;
+OUTXML(ZRTN,INID,NO1ST) ; USES C0SMXMLB (MXMLBLD) TO OUTPUT XML FROM AN MXMLDOM
+ ;
+ S C0SDOCID=INID
+ I '$D(NO1ST) S NO1ST=0 ; DO NOT SURPRESS THE 0 S ZPARNODE=PARENT ; WE HAVE BEEN PASSED A PARENT NODE ID
+ E I $L($G(PARENT))>0 D ; TBD FIND THE PARENT IN THE DOM AND SET LEVEL
+ . D STARTELE^MXMLDOM(PARENT) ; INSERT THE PARENT NODE
+ . S ZPARNODE=1 ;
+ ; WE NOW HAVE A HANDLE AND A PARENT NODE AND LEVEL HAS BEEN SET
+ N ZEXARY
+ D EXPAND("ZEXARY",INARY) ; EXPAND THE NHIN ARRAY
+ D MAJOR("ZEXARY") ; PROCESS ALL THE NODES TO BE ADDED
+ I $L($G(PARENT))>0 D ENDELE^MXMLDOM(PARENT) ; CLOSE OUT THE PARENT NODE
+ Q HANDLE ; SUCCESS
+ ;
+MAJOR(ZARY) ; RECURSIVE ROUTINE FOR INTERMEDIATE NODES
+ N ZI S ZI=""
+ N ZTAG
+ F S ZI=$O(@ZARY@(ZI)) Q:ZI="" D ; FOR EACH SECTION
+ . N ZELEADD S ZELEADD=0
+ . I ZI["@" D ; END NODE HAS NO VALUE, ONLY ATTRIBUTES
+ . . S ZTAG=$P(ZI,"@",1) ; PULL OUT THE TAG
+ . . K ZATT ; CLEAR OUT LAST ONE
+ . . M ZATT=@ZARY@(ZI,1) ; GET ATTRIBUTE ARRAY
+ . . D STARTELE^MXMLDOM(ZTAG,.ZATT) ; ADD THE NODE
+ . . S ZELEADD=1 ; FLAG TO NOT ADD THE ELEMENT TWICE
+ . I $O(@ZARY@(ZI,""))="" D ;END NODE
+ . . S ZTAG=ZI ; USE ZI FOR THE TAG
+ . . I 'ZELEADD D STARTELE^MXMLDOM(ZTAG) ; ADD ELEMENT IF NOT THERE
+ . . S ZELEADD=1 ; ADDED AN ELEMENT
+ . . D CHAR^MXMLDOM($G(@ZARY@(ZI))) ; INSERT THE VALUE
+ . I ZELEADD D Q ; NO MORE TO DO ON THIS LEVEL
+ . . D ENDELE^MXMLDOM(ZTAG) ; CLOSE THE ELEMENT BEFORE LEAVING
+ . N NEWARY ; INDENTED ARRAY
+ . N ZN S ZN=0
+ . F S ZN=$O(@ZARY@(ZI,ZN)) Q:ZN="" D ; FOR EACH MULTIPLE
+ . . D STARTELE^MXMLDOM(ZI) ; ADD THE INTERMEDIATE TAG
+ . . S NEWARY=$NA(@ZARY@(ZI,ZN)) ; INDENT THE ARRAY
+ . . D MAJOR(NEWARY) ; RECURSE FOR INDENTED ARRAY
+ . . D ENDELE^MXMLDOM(ZI) ; END THE INTERMEDIATE TAG
+ Q
+ ;
+EXPAND(ZZOUT,ZZIN) ; EXPANDS NHIN ARRAY FORMAT TO AN EXPANDED
+ ; CONSISTENT FORMAT
+ ; GNARY("patient",1,"facilities[2].facility@code")="050"
+ ; becomes G2ARY("patient",1,"facilities",2,"facility@",1,"code")="050"
+ ; for easier processing (this is fileman format genius)
+ ; basically removes the dot notation from the strings
+ ;
+ N ZZI
+ S ZZI=""
+ F S ZZI=$O(@ZZIN@(ZZI)) Q:ZZI="" D ;
+ . N ZZN S ZZN=0
+ . F S ZZN=$O(@ZZIN@(ZZI,ZZN)) Q:ZZN="" D ;
+ . . N ZZS S ZZS=""
+ . . N GA ;PUSH STACK
+ . . F S ZZS=$O(@ZZIN@(ZZI,ZZN,ZZS)) Q:ZZS="" D ;
+ . . . K GA ; NEW STACK
+ . . . D PUSH^C0SXPATH("GA",ZZI_"^"_ZZN) ; PUSH PARENT
+ . . . N ZZV ; PLACE TO STASH THE VALUE
+ . . . S ZZV=@ZZIN@(ZZI,ZZN,ZZS) ; VALUE
+ . . . W !,"VALUE:",ZZV
+ . . . N GK ; COUNTER
+ . . . F GK=1:1:$L(ZZS,".") D ; FOR EACH INTERMEDIATE NODE
+ . . . . N ZZN2 S ZZN2=1 ; DEFAULT IF NO [X]
+ . . . . N GM S GM=$P(ZZS,".",GK) ; TAG
+ . . . . I GM["[" D ; IT'S A MULTIPLE
+ . . . . . S ZZN2=$P($P(GM,"[",2),"]",1) ; PULL OUT THE NUMBER
+ . . . . . S GM=$P(GM,"[",1) ; PULL OUT THE TAG
+ . . . . I GM["@" D ; IT'S GOT ATTRIBUTES
+ . . . . . N GM2 S GM2=$P(GM,"@",2) ; PULLOUT THE ATTRIBUTE NAME
+ . . . . . D PUSH^C0SXPATH("GA",$P(GM,"@",1)_"@"_"^"_ZZN2) ; PUSH THE TAG
+ . . . . . D PUSH^C0SXPATH("GA",GM2_"^"_ZZN2)
+ . . . . E D PUSH^C0SXPATH("GA",GM_"^"_ZZN2) ;
+ . . . S GA(GA(0))=$P(GA(GA(0)),"^",1)_"^" ; GET RID OF THE LAST "1"
+ . . . N GZI S GZI="" ; STRING FOR THE INDEX
+ . . . F GK=1:1:GA(0) D ; TIME TO REVERSE POP THE TAGS
+ . . . . S GM=$P(GA(GK),"^",1) ; THE TAG
+ . . . . S ZZN2=$P(GA(GK),"^",2) ; THE NUMBER IF ANY
+ . . . . I ZZN2="" S GZI=GZI_""""_GM_"""" ; FOR THE LAST ONE
+ . . . . E S GZI=GZI_""""_GM_""""_","_ZZN2_"," ; FOR THE REST
+ . . . S GZI2=ZZOUT_"("_GZI_")" ; INCLUDE THE ARRAY NAME
+ . . . W !,GZI
+ . . . S @GZI2=ZZV ; REMEMBER THE VALUE?
+ Q
+ ;
+NEWDOM() ; extrinsic which creates a new DOM and returns the HANDLE
+ N CBK,SUCCESS,LEVEL,NODE,HANDLE
+ K ^TMP("MXMLERR",$J)
+ L +^TMP("MXMLDOM",$J):5
+ E Q 0
+ S HANDLE=$O(^TMP("MXMLDOM",$J,""),-1)+1,^(HANDLE)=""
+ L -^TMP("MXMLDOM",$J)
+ Q HANDLE
+ ;
diff --git a/p/C0SLAB.m b/p/C0SLAB.m
index e386dd6..529c063 100644
--- a/p/C0SLAB.m
+++ b/p/C0SLAB.m
@@ -1,275 +1,275 @@
-C0SLAB ; GPL - Smart Lab Processing ;4/15/12 17:05
- ;;0.1;C0S;nopatch;noreleasedate;Build 2
- ;Copyright 2012 George Lilly. Licensed under the terms of the GNU
- ;General Public License See attached copy of the License.
- ;
- ;This program is free software; you can redistribute it and/or modify
- ;it under the terms of the GNU General Public License as published by
- ;the Free Software Foundation; either version 2 of the License, or
- ;(at your option) any later version.
- ;
- ;This program is distributed in the hope that it will be useful,
- ;but WITHOUT ANY WARRANTY; without even the implied warranty of
- ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- ;GNU General Public License for more details.
- ;
- ;You should have received a copy of the GNU General Public License along
- ;with this program; if not, write to the Free Software Foundation, Inc.,
- ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
- ;
- Q
- ;
- ; sample VistA NHIN lab result
- ;
- ;^TMP("C0STBL",32,"lab",8,"collected@value")=3110626.16
- ;^TMP("C0STBL",32,"lab",8,"comment")="Report Released Date/Time: Jun 26, 2011@19:00"
- ;^TMP("C0STBL",32,"lab",8,"comment@xml:space")="preserve"
- ;^TMP("C0STBL",32,"lab",8,"facility@code")=100
- ;^TMP("C0STBL",32,"lab",8,"facility@name")="VOE OFFICE INSTITUTION"
- ;^TMP("C0STBL",32,"lab",8,"groupName@value")="CH 0626 47"
- ;^TMP("C0STBL",32,"lab",8,"high@value")=" 101"
- ;^TMP("C0STBL",32,"lab",8,"id@value")="CH;6889372.84;67003"
- ;^TMP("C0STBL",32,"lab",8,"interpretation@value")="H"
- ;^TMP("C0STBL",32,"lab",8,"labOrderID@value")=336
- ;^TMP("C0STBL",32,"lab",8,"localName@value")="FBLDGLU"
- ;^TMP("C0STBL",32,"lab",8,"loinc@value")="14771-0"
- ;^TMP("C0STBL",32,"lab",8,"low@value")="69 "
- ;^TMP("C0STBL",32,"lab",8,"orderID@value")=807
- ;^TMP("C0STBL",32,"lab",8,"result@value")=178
- ;^TMP("C0STBL",32,"lab",8,"resulted@value")=3110626.190006
- ;^TMP("C0STBL",32,"lab",8,"sample@value")="SERUM"
- ;^TMP("C0STBL",32,"lab",8,"specimen@code")="0X500"
- ;^TMP("C0STBL",32,"lab",8,"specimen@name")="SERUM"
- ;^TMP("C0STBL",32,"lab",8,"status@value")="completed"
- ;^TMP("C0STBL",32,"lab",8,"test@value")="FASTING BLOOD GLUCOSE"
- ;^TMP("C0STBL",32,"lab",8,"type@value")="CH"
- ;^TMP("C0STBL",32,"lab",8,"units@value")="MG/DL"
- ;^TMP("C0STBL",32,"lab",8,"vuid@value")=4656342
- ;
- ; sample Smart lab result triples
- ;
- ;G("loinc:29571-7","dcterms:identifier")="29571-7"
- ;G("loinc:29571-7","dcterms:title")="Phe DBS Ql"
- ;G("loinc:29571-7","rdf:type")="sp:Code"
- ;G("loinc:29571-7","sp:system")="http://loinc.org/codes/"
- ;G("loinc:38478-4","dcterms:identifier")="38478-4"
- ;G("loinc:38478-4","dcterms:title")="Biotinidase DBS Ql"
- ;G("loinc:38478-4","rdf:type")="sp:Code"
- ;G("loinc:38478-4","sp:system")="http://loinc.org/codes/"
- ;G("qqWZZIew993","rdf:type")="sp:Attribution"
- ;G("qqWZZIew993","sp:startDate")="2007-04-21"
- ;G("qqWZZIew994","rdf:type")="sp:NarrativeResult"
- ;G("qqWZZIew994","sp:value")="Normal"
- ;G("qqWZZIew995","dcterms:title")="Biotinidase DBS Ql"
- ;G("qqWZZIew995","rdf:type")="sp:CodedValue"
- ;G("qqWZZIew995","sp:code")="loinc:38478-4"
- ;G("qqWZZIew997","rdf:type")="sp:Attribution"
- ;G("qqWZZIew997","sp:startDate")="2007-09-08"
- ;G("qqWZZIew998","rdf:type")="sp:NarrativeResult"
- ;G("qqWZZIew998","sp:value")="Normal"
- ;G("qqWZZIew999","dcterms:title")="Phe DBS Ql"
- ;G("qqWZZIew999","rdf:type")="sp:CodedValue"
- ;G("qqWZZIew999","sp:code")="loinc:29571-7"
- ;G("smart:99912345/lab_results/3d9b39249193","rdf:type")="sp:LabResult"
- ;G("smart:99912345/lab_results/3d9b39249193","sp:belongsTo")="smart:99912345"
- ;G("smart:99912345/lab_results/3d9b39249193","sp:labName")="qqWZZIew995"
- ;G("smart:99912345/lab_results/3d9b39249193","sp:narrativeResult")="qqWZZIew994"
- ;G("smart:99912345/lab_results/3d9b39249193","sp:specimenCollected")="qqWZZIew993"
- ;G("smart:99912345/lab_results/426c7adc4f54","rdf:type")="sp:LabResult"
- ;G("smart:99912345/lab_results/426c7adc4f54","sp:belongsTo")="smart:99912345"
- ;G("smart:99912345/lab_results/426c7adc4f54","sp:labName")="qqWZZIew999"
- ;G("smart:99912345/lab_results/426c7adc4f54","sp:narrativeResult")="qqWZZIew998"
- ;G("smart:99912345/lab_results/426c7adc4f54","sp:specimenCollected")="qqWZZIew997"
- ;
- ;
- ; another Smart example, this one with sp:quantitativeResult
- ;
- ;G("loinc:786-4","dcterms:identifier")="786-4"
- ;G("loinc:786-4","dcterms:title")="MCHC RBC Auto-mCnc"
- ;G("loinc:786-4","rdf:type")="sp:Code"
- ;G("loinc:786-4","sp:system")="http://loinc.org/codes/"
- ;G("nodeID:4439","rdf:type")="sp:ValueAndUnit"
- ;G("nodeID:4439","sp:unit")="g/dL"
- ;G("nodeID:4439","sp:value")=36.6
- ;G("nodeID:4613","rdf:type")="sp:ValueAndUnit"
- ;G("nodeID:4613","sp:unit")="g/dL"
- ;G("nodeID:4613","sp:value")=32
- ;G("nodeID:4672","rdf:type")="sp:Attribution"
- ;G("nodeID:4672","sp:startDate")="2005-03-10"
- ;G("nodeID:4866","rdf:type")="sp:ValueAndUnit"
- ;G("nodeID:4866","sp:unit")="g/dL"
- ;G("nodeID:4866","sp:value")=36
- ;G("nodeID:4871","dcterms:title")="MCHC RBC Auto-mCnc"
- ;G("nodeID:4871","rdf:type")="sp:CodedValue"
- ;G("nodeID:4871","sp:code")="loinc:786-4"
- ;G("nodeID:5221","rdf:type")="sp:QuantitativeResult"
- ;G("nodeID:5221","sp:normalRange")="nodeID:5282"
- ;G("nodeID:5221","sp:valueAndUnit")="nodeID:4439"
- ;G("nodeID:5282","rdf:type")="sp:ValueRange"
- ;G("nodeID:5282","sp:maximum")="nodeID:4866"
- ;G("nodeID:5282","sp:minimum")="nodeID:4613"
- ;G("smart:1540505/lab_results/2fc100850766","rdf:type")="sp:LabResult"
- ;G("smart:1540505/lab_results/2fc100850766","sp:belongsTo")="smart:1540505"
- ;G("smart:1540505/lab_results/2fc100850766","sp:labName")="nodeID:4871"
- ;G("smart:1540505/lab_results/2fc100850766","sp:quantitativeResult")="nodeID:5221"
- ;G("smart:1540505/lab_results/2fc100850766","sp:specimenCollected")="nodeID:4672"
- ;
-LAB(GRTN,C0SARY) ; GRTN, passed by reference,
- ; is the return name of the graph created. "" if none
- ; C0SARY is passed in by reference and is the NHIN array of lab
- ;
- I $O(C0SARY("lab",""))="" D Q ;
- . I $D(DEBUG) W !,"No Labs"
- S GRTN="" ; default to no labs
- N C0SGRF
- S C0SGRF="vistaSmart:"_ZPATID_"/lab_results"
- I $D(DEBUG) W !,"Processing ",C0SGRF
- D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
- D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
- N FARY S FARY="C0XFARY"
- D USEFARY^C0XF2N(FARY)
- D VOCINIT^C0XUTIL
- ;
- D STARTADD^C0XF2N ; initialize to create triples
- ;
- N ZI S ZI=""
- F S ZI=$O(C0SARY("lab",ZI)) Q:ZI="" D ;
- . N LRN,ZR ; ZR is the local array for building the new triples
- . S LRN=$NA(C0SARY("lab",ZI)) ; base for values in this lab result
- . ;
- . N RSLTID ; unique Id for this lab result
- . S RSLTID=C0SGRF_"/"_$$LKY17^C0XF2N ; use a random number
- . ;
- . ; i don't like this because the same labs result gets a
- . ; different ID every time it's reported. Can't trace it back to VistA
- . ; I'd rather be using id@value ie "id@value")="CH;6889372.84;67003"
- . ; .. either that or store an OID with the lab result - but that
- . ; will have to wait for the redesign of file 60.. - gpl 4/16/2012
- . ;
- . N LOINC S LOINC=$G(@LRN@("loinc@value"))
- . I LOINC="" D Q ;
- . . I $D(DEBUG) W !,"NO LOINC VALUE, SKIPPING"
- . N LABTST S LABTST=$G(@LRN@("test@value"))
- . I $D(DEBUG) D ;
- . . W !,"Processing Lab Result ",RSLTID
- . . W !,"test: ",LABTST
- . . W !,"loinc: ",LOINC
- . ;
- . ; first do the base result graph
- . ;
- . S ZR("rdf:type")="sp:LabResult"
- . S ZR("sp:belongsTo")=C0SGRF ; the subject for this patient's lab results
- . ; ie /vista/smart/99912345/lab_results
- . ;
- . N LABNAME S LABNAME=$$ANONS^C0XF2N ; new node for lab name
- . S ZR("sp:labName")=LABNAME
- . ;
- . N NARRSLT S NARRSLT=$$ANONS^C0XF2N ; new node for narrative result
- . S ZR("sp:narrativeResult")=NARRSLT
- . ;
- . N QNTRSLT S QNTRSLT=$$ANONS^C0XF2N ; new node for narrative result
- . S ZR("sp:quantitativeResult")=QNTRSLT
- . ;
- . N SPECCOLL S SPECCOLL=$$ANONS^C0XF2N ; new node for specimen collected
- . S ZR("sp:specimenCollected")=SPECCOLL
- . ;
- . D ADDINN^C0XF2N(C0SGRF,RSLTID,.ZR) ; addIfNotNull the triples
- . K ZR ; clean up
- . ;
- . ; create the narrative result graph
- . ;
- . N IVAL S IVAL=$G(@LRN@("interpretation@value"))'="" D ; H OR L
- . I IVAL'=""
- . . S ZR("rdf:type")="sp:NarrativeResult"
- . . S ZR("sp:value")=$G(@LRN@("interpretation@value")) ; H or L
- . . I ZR("sp:value")="L" S ZR("sp:value")="abnormal"
- . . I ZR("sp:value")="H" S ZR("sp:value")="abnormal"
- . . I ZR("sp:value")="HH" S ZR("sp:value")="critical"
- . . I ZR("sp:value")="LL" S ZR("sp:value")="critical"
- . . D ADDINN^C0XF2N(C0SGRF,NARRSLT,.ZR)
- . . K ZR
- . ;
- . ; create the quantitative result graph
- . ;
- . S ZR("rdf:type")="sp:QuantitativeResult"
- . N NORMNM S NORMNM=$$ANONS^C0XF2N ; new node for normal range graph
- . N VUNM S VUNM=$$ANONS^C0XF2N ; new node for value and unit graph
- . N HASNORMAL S HASNORMAL=0
- . I $G(@LRN@("high@value"))'="" S HASNORMAL=1
- . I HASNORMAL S ZR("sp:normalRange")=NORMNM
- . S ZR("sp:valueAndUnit")=VUNM
- . D ADDINN^C0XF2N(C0SGRF,QNTRSLT,.ZR)
- . K ZR
- . ;
- . ; create the normal range graph
- . ;
- . I HASNORMAL D ;
- . . S ZR("rdf:type")="sp:ValueRange"
- . . N MAXNM S MAXNM=$$ANONS^C0XF2N ; new node for maximum graph
- . . N MINNM S MINNM=$$ANONS^C0XF2N ; new node for minimum graph
- . . S ZR("sp:maximum")=MAXNM
- . . S ZR("sp:minimum")=MINNM
- . . D ADDINN^C0XF2N(C0SGRF,NORMNM,.ZR)
- . . K ZR
- . . ;
- . . ; create the maximum graph
- . . ;
- . . S ZR("rdf:type")="sp:ValueAndUnit"
- . . S ZR("sp:unit")=$G(@LRN@("units@value"))
- . . S ZR("sp:value")=$G(@LRN@("high@value"))
- . . D ADDINN^C0XF2N(C0SGRF,MAXNM,.ZR)
- . . K ZR
- . . ;
- . . ; create the minimum graph
- . . ;
- . . S ZR("rdf:type")="sp:ValueAndUnit"
- . . S ZR("sp:unit")=$G(@LRN@("units@value"))
- . . S ZR("sp:value")=$G(@LRN@("low@value"))
- . . D ADDINN^C0XF2N(C0SGRF,MINNM,.ZR)
- . . K ZR
- . ;
- . ; create the value and unit graph
- . ;
- . S ZR("rdf:type")="sp:ValueAndUnit"
- . S ZR("sp:unit")=$G(@LRN@("units@value"))
- . I ZR("sp:unit")="" S ZR("sp:unit")=$G(@LRN@("test@value"))
- . S ZR("sp:value")=$G(@LRN@("result@value"))
- . D ADDINN^C0XF2N(C0SGRF,VUNM,.ZR)
- . K ZR
- . ;
- . ; create specimen collected graph
- . ;
- . S ZR("rdf:type")="sp:Attribution"
- . S ZR("sp:startDate")=$$SPDATE^C0SUTIL($G(@LRN@("collected@value")))
- . D ADDINN^C0XF2N(C0SGRF,SPECCOLL,.ZR)
- . K ZR
- . ;
- . ; create lab name graph - this contains the test name and code
- . ;
- . I LOINC'="" D ;
- . . S ZR("rdf:type")="sp:CodedValue"
- . . S ZR("dcterms:title")=LABTST
- . . N LOINCNM S LOINCNM="loinc:"_LOINC
- . . S ZR("sp:code")="loinc:"_LOINC
- . . D ADDINN^C0XF2N(C0SGRF,LABNAME,.ZR)
- . . K ZR
- . . S ZR("dcterms:identifier")=LOINC
- . . S ZR("dcterms:title")=LABTST
- . . S ZR("rdf:type")="sp:Code"
- . . S ZR("sp:system")="http://loinc.org/codes/"
- . . D ADDINN^C0XF2N(C0SGRF,LOINCNM,.ZR)
- . . K ZR
- . ;
- . ; that's all for now folks (there is more to do like reference ranges
- . ; and result values)
- . ;
- D BULKLOAD^C0XF2N(.C0XFDA)
- S GRTN=C0SGRF
- Q
- ;
-SAMPLE ; import sample lab tests to the triplestore
- N GN
- S GN=$NA(^rdf("lab_results"))
- D INSRDF^C0XF2N(GN,"/smart/lab/samples")
- Q
- ;
\ No newline at end of file
+C0SLAB ; GPL - Smart Lab Processing ;4/15/12 17:05
+ ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
+ ;Copyright 2012 George Lilly. Licensed under the terms of the GNU
+ ;General Public License See attached copy of the License.
+ ;
+ ;This program is free software; you can redistribute it and/or modify
+ ;it under the terms of the GNU General Public License as published by
+ ;the Free Software Foundation; either version 2 of the License, or
+ ;(at your option) any later version.
+ ;
+ ;This program is distributed in the hope that it will be useful,
+ ;but WITHOUT ANY WARRANTY; without even the implied warranty of
+ ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ ;GNU General Public License for more details.
+ ;
+ ;You should have received a copy of the GNU General Public License along
+ ;with this program; if not, write to the Free Software Foundation, Inc.,
+ ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+ ;
+ Q
+ ;
+ ; sample VistA NHIN lab result
+ ;
+ ;^TMP("C0STBL",32,"lab",8,"collected@value")=3110626.16
+ ;^TMP("C0STBL",32,"lab",8,"comment")="Report Released Date/Time: Jun 26, 2011@19:00"
+ ;^TMP("C0STBL",32,"lab",8,"comment@xml:space")="preserve"
+ ;^TMP("C0STBL",32,"lab",8,"facility@code")=100
+ ;^TMP("C0STBL",32,"lab",8,"facility@name")="VOE OFFICE INSTITUTION"
+ ;^TMP("C0STBL",32,"lab",8,"groupName@value")="CH 0626 47"
+ ;^TMP("C0STBL",32,"lab",8,"high@value")=" 101"
+ ;^TMP("C0STBL",32,"lab",8,"id@value")="CH;6889372.84;67003"
+ ;^TMP("C0STBL",32,"lab",8,"interpretation@value")="H"
+ ;^TMP("C0STBL",32,"lab",8,"labOrderID@value")=336
+ ;^TMP("C0STBL",32,"lab",8,"localName@value")="FBLDGLU"
+ ;^TMP("C0STBL",32,"lab",8,"loinc@value")="14771-0"
+ ;^TMP("C0STBL",32,"lab",8,"low@value")="69 "
+ ;^TMP("C0STBL",32,"lab",8,"orderID@value")=807
+ ;^TMP("C0STBL",32,"lab",8,"result@value")=178
+ ;^TMP("C0STBL",32,"lab",8,"resulted@value")=3110626.190006
+ ;^TMP("C0STBL",32,"lab",8,"sample@value")="SERUM"
+ ;^TMP("C0STBL",32,"lab",8,"specimen@code")="0X500"
+ ;^TMP("C0STBL",32,"lab",8,"specimen@name")="SERUM"
+ ;^TMP("C0STBL",32,"lab",8,"status@value")="completed"
+ ;^TMP("C0STBL",32,"lab",8,"test@value")="FASTING BLOOD GLUCOSE"
+ ;^TMP("C0STBL",32,"lab",8,"type@value")="CH"
+ ;^TMP("C0STBL",32,"lab",8,"units@value")="MG/DL"
+ ;^TMP("C0STBL",32,"lab",8,"vuid@value")=4656342
+ ;
+ ; sample Smart lab result triples
+ ;
+ ;G("loinc:29571-7","dcterms:identifier")="29571-7"
+ ;G("loinc:29571-7","dcterms:title")="Phe DBS Ql"
+ ;G("loinc:29571-7","rdf:type")="sp:Code"
+ ;G("loinc:29571-7","sp:system")="http://loinc.org/codes/"
+ ;G("loinc:38478-4","dcterms:identifier")="38478-4"
+ ;G("loinc:38478-4","dcterms:title")="Biotinidase DBS Ql"
+ ;G("loinc:38478-4","rdf:type")="sp:Code"
+ ;G("loinc:38478-4","sp:system")="http://loinc.org/codes/"
+ ;G("qqWZZIew993","rdf:type")="sp:Attribution"
+ ;G("qqWZZIew993","sp:startDate")="2007-04-21"
+ ;G("qqWZZIew994","rdf:type")="sp:NarrativeResult"
+ ;G("qqWZZIew994","sp:value")="Normal"
+ ;G("qqWZZIew995","dcterms:title")="Biotinidase DBS Ql"
+ ;G("qqWZZIew995","rdf:type")="sp:CodedValue"
+ ;G("qqWZZIew995","sp:code")="loinc:38478-4"
+ ;G("qqWZZIew997","rdf:type")="sp:Attribution"
+ ;G("qqWZZIew997","sp:startDate")="2007-09-08"
+ ;G("qqWZZIew998","rdf:type")="sp:NarrativeResult"
+ ;G("qqWZZIew998","sp:value")="Normal"
+ ;G("qqWZZIew999","dcterms:title")="Phe DBS Ql"
+ ;G("qqWZZIew999","rdf:type")="sp:CodedValue"
+ ;G("qqWZZIew999","sp:code")="loinc:29571-7"
+ ;G("smart:99912345/lab_results/3d9b39249193","rdf:type")="sp:LabResult"
+ ;G("smart:99912345/lab_results/3d9b39249193","sp:belongsTo")="smart:99912345"
+ ;G("smart:99912345/lab_results/3d9b39249193","sp:labName")="qqWZZIew995"
+ ;G("smart:99912345/lab_results/3d9b39249193","sp:narrativeResult")="qqWZZIew994"
+ ;G("smart:99912345/lab_results/3d9b39249193","sp:specimenCollected")="qqWZZIew993"
+ ;G("smart:99912345/lab_results/426c7adc4f54","rdf:type")="sp:LabResult"
+ ;G("smart:99912345/lab_results/426c7adc4f54","sp:belongsTo")="smart:99912345"
+ ;G("smart:99912345/lab_results/426c7adc4f54","sp:labName")="qqWZZIew999"
+ ;G("smart:99912345/lab_results/426c7adc4f54","sp:narrativeResult")="qqWZZIew998"
+ ;G("smart:99912345/lab_results/426c7adc4f54","sp:specimenCollected")="qqWZZIew997"
+ ;
+ ;
+ ; another Smart example, this one with sp:quantitativeResult
+ ;
+ ;G("loinc:786-4","dcterms:identifier")="786-4"
+ ;G("loinc:786-4","dcterms:title")="MCHC RBC Auto-mCnc"
+ ;G("loinc:786-4","rdf:type")="sp:Code"
+ ;G("loinc:786-4","sp:system")="http://loinc.org/codes/"
+ ;G("nodeID:4439","rdf:type")="sp:ValueAndUnit"
+ ;G("nodeID:4439","sp:unit")="g/dL"
+ ;G("nodeID:4439","sp:value")=36.6
+ ;G("nodeID:4613","rdf:type")="sp:ValueAndUnit"
+ ;G("nodeID:4613","sp:unit")="g/dL"
+ ;G("nodeID:4613","sp:value")=32
+ ;G("nodeID:4672","rdf:type")="sp:Attribution"
+ ;G("nodeID:4672","sp:startDate")="2005-03-10"
+ ;G("nodeID:4866","rdf:type")="sp:ValueAndUnit"
+ ;G("nodeID:4866","sp:unit")="g/dL"
+ ;G("nodeID:4866","sp:value")=36
+ ;G("nodeID:4871","dcterms:title")="MCHC RBC Auto-mCnc"
+ ;G("nodeID:4871","rdf:type")="sp:CodedValue"
+ ;G("nodeID:4871","sp:code")="loinc:786-4"
+ ;G("nodeID:5221","rdf:type")="sp:QuantitativeResult"
+ ;G("nodeID:5221","sp:normalRange")="nodeID:5282"
+ ;G("nodeID:5221","sp:valueAndUnit")="nodeID:4439"
+ ;G("nodeID:5282","rdf:type")="sp:ValueRange"
+ ;G("nodeID:5282","sp:maximum")="nodeID:4866"
+ ;G("nodeID:5282","sp:minimum")="nodeID:4613"
+ ;G("smart:1540505/lab_results/2fc100850766","rdf:type")="sp:LabResult"
+ ;G("smart:1540505/lab_results/2fc100850766","sp:belongsTo")="smart:1540505"
+ ;G("smart:1540505/lab_results/2fc100850766","sp:labName")="nodeID:4871"
+ ;G("smart:1540505/lab_results/2fc100850766","sp:quantitativeResult")="nodeID:5221"
+ ;G("smart:1540505/lab_results/2fc100850766","sp:specimenCollected")="nodeID:4672"
+ ;
+LAB(GRTN,C0SARY) ; GRTN, passed by reference,
+ ; is the return name of the graph created. "" if none
+ ; C0SARY is passed in by reference and is the NHIN array of lab
+ ;
+ I $O(C0SARY("lab",""))="" D Q ;
+ . I $D(DEBUG) W !,"No Labs"
+ S GRTN="" ; default to no labs
+ N C0SGRF
+ S C0SGRF="vistaSmart:"_ZPATID_"/lab_results"
+ I $D(DEBUG) W !,"Processing ",C0SGRF
+ D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
+ D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
+ N FARY S FARY="C0XFARY"
+ D USEFARY^C0XF2N(FARY)
+ D VOCINIT^C0XUTIL
+ ;
+ D STARTADD^C0XF2N ; initialize to create triples
+ ;
+ N ZI S ZI=""
+ F S ZI=$O(C0SARY("lab",ZI)) Q:ZI="" D ;
+ . N LRN,ZR ; ZR is the local array for building the new triples
+ . S LRN=$NA(C0SARY("lab",ZI)) ; base for values in this lab result
+ . ;
+ . N RSLTID ; unique Id for this lab result
+ . S RSLTID=C0SGRF_"/"_$$LKY17^C0XF2N ; use a random number
+ . ;
+ . ; i don't like this because the same labs result gets a
+ . ; different ID every time it's reported. Can't trace it back to VistA
+ . ; I'd rather be using id@value ie "id@value")="CH;6889372.84;67003"
+ . ; .. either that or store an OID with the lab result - but that
+ . ; will have to wait for the redesign of file 60.. - gpl 4/16/2012
+ . ;
+ . N LOINC S LOINC=$G(@LRN@("loinc@value"))
+ . I LOINC="" D Q ;
+ . . I $D(DEBUG) W !,"NO LOINC VALUE, SKIPPING"
+ . N LABTST S LABTST=$G(@LRN@("test@value"))
+ . I $D(DEBUG) D ;
+ . . W !,"Processing Lab Result ",RSLTID
+ . . W !,"test: ",LABTST
+ . . W !,"loinc: ",LOINC
+ . ;
+ . ; first do the base result graph
+ . ;
+ . S ZR("rdf:type")="sp:LabResult"
+ . S ZR("sp:belongsTo")=C0SGRF ; the subject for this patient's lab results
+ . ; ie /vista/smart/99912345/lab_results
+ . ;
+ . N LABNAME S LABNAME=$$ANONS^C0XF2N ; new node for lab name
+ . S ZR("sp:labName")=LABNAME
+ . ;
+ . N NARRSLT S NARRSLT=$$ANONS^C0XF2N ; new node for narrative result
+ . S ZR("sp:narrativeResult")=NARRSLT
+ . ;
+ . N QNTRSLT S QNTRSLT=$$ANONS^C0XF2N ; new node for narrative result
+ . S ZR("sp:quantitativeResult")=QNTRSLT
+ . ;
+ . N SPECCOLL S SPECCOLL=$$ANONS^C0XF2N ; new node for specimen collected
+ . S ZR("sp:specimenCollected")=SPECCOLL
+ . ;
+ . D ADDINN^C0XF2N(C0SGRF,RSLTID,.ZR) ; addIfNotNull the triples
+ . K ZR ; clean up
+ . ;
+ . ; create the narrative result graph
+ . ;
+ . N IVAL S IVAL=$G(@LRN@("interpretation@value"))'="" D ; H OR L
+ . I IVAL'=""
+ . . S ZR("rdf:type")="sp:NarrativeResult"
+ . . S ZR("sp:value")=$G(@LRN@("interpretation@value")) ; H or L
+ . . I ZR("sp:value")="L" S ZR("sp:value")="abnormal"
+ . . I ZR("sp:value")="H" S ZR("sp:value")="abnormal"
+ . . I ZR("sp:value")="HH" S ZR("sp:value")="critical"
+ . . I ZR("sp:value")="LL" S ZR("sp:value")="critical"
+ . . D ADDINN^C0XF2N(C0SGRF,NARRSLT,.ZR)
+ . . K ZR
+ . ;
+ . ; create the quantitative result graph
+ . ;
+ . S ZR("rdf:type")="sp:QuantitativeResult"
+ . N NORMNM S NORMNM=$$ANONS^C0XF2N ; new node for normal range graph
+ . N VUNM S VUNM=$$ANONS^C0XF2N ; new node for value and unit graph
+ . N HASNORMAL S HASNORMAL=0
+ . I $G(@LRN@("high@value"))'="" S HASNORMAL=1
+ . I HASNORMAL S ZR("sp:normalRange")=NORMNM
+ . S ZR("sp:valueAndUnit")=VUNM
+ . D ADDINN^C0XF2N(C0SGRF,QNTRSLT,.ZR)
+ . K ZR
+ . ;
+ . ; create the normal range graph
+ . ;
+ . I HASNORMAL D ;
+ . . S ZR("rdf:type")="sp:ValueRange"
+ . . N MAXNM S MAXNM=$$ANONS^C0XF2N ; new node for maximum graph
+ . . N MINNM S MINNM=$$ANONS^C0XF2N ; new node for minimum graph
+ . . S ZR("sp:maximum")=MAXNM
+ . . S ZR("sp:minimum")=MINNM
+ . . D ADDINN^C0XF2N(C0SGRF,NORMNM,.ZR)
+ . . K ZR
+ . . ;
+ . . ; create the maximum graph
+ . . ;
+ . . S ZR("rdf:type")="sp:ValueAndUnit"
+ . . S ZR("sp:unit")=$G(@LRN@("units@value"))
+ . . S ZR("sp:value")=$G(@LRN@("high@value"))
+ . . D ADDINN^C0XF2N(C0SGRF,MAXNM,.ZR)
+ . . K ZR
+ . . ;
+ . . ; create the minimum graph
+ . . ;
+ . . S ZR("rdf:type")="sp:ValueAndUnit"
+ . . S ZR("sp:unit")=$G(@LRN@("units@value"))
+ . . S ZR("sp:value")=$G(@LRN@("low@value"))
+ . . D ADDINN^C0XF2N(C0SGRF,MINNM,.ZR)
+ . . K ZR
+ . ;
+ . ; create the value and unit graph
+ . ;
+ . S ZR("rdf:type")="sp:ValueAndUnit"
+ . S ZR("sp:unit")=$G(@LRN@("units@value"))
+ . I ZR("sp:unit")="" S ZR("sp:unit")=$G(@LRN@("test@value"))
+ . S ZR("sp:value")=$G(@LRN@("result@value"))
+ . D ADDINN^C0XF2N(C0SGRF,VUNM,.ZR)
+ . K ZR
+ . ;
+ . ; create specimen collected graph
+ . ;
+ . S ZR("rdf:type")="sp:Attribution"
+ . S ZR("sp:startDate")=$$SPDATE^C0SUTIL($G(@LRN@("collected@value")))
+ . D ADDINN^C0XF2N(C0SGRF,SPECCOLL,.ZR)
+ . K ZR
+ . ;
+ . ; create lab name graph - this contains the test name and code
+ . ;
+ . I LOINC'="" D ;
+ . . S ZR("rdf:type")="sp:CodedValue"
+ . . S ZR("dcterms:title")=LABTST
+ . . N LOINCNM S LOINCNM="loinc:"_LOINC
+ . . S ZR("sp:code")="loinc:"_LOINC
+ . . D ADDINN^C0XF2N(C0SGRF,LABNAME,.ZR)
+ . . K ZR
+ . . S ZR("dcterms:identifier")=LOINC
+ . . S ZR("dcterms:title")=LABTST
+ . . S ZR("rdf:type")="sp:Code"
+ . . S ZR("sp:system")="http://loinc.org/codes/"
+ . . D ADDINN^C0XF2N(C0SGRF,LOINCNM,.ZR)
+ . . K ZR
+ . ;
+ . ; that's all for now folks (there is more to do like reference ranges
+ . ; and result values)
+ . ;
+ D BULKLOAD^C0XF2N(.C0XFDA)
+ S GRTN=C0SGRF
+ Q
+ ;
+SAMPLE ; import sample lab tests to the triplestore
+ N GN
+ S GN=$NA(^rdf("lab_results"))
+ D INSRDF^C0XF2N(GN,"/smart/lab/samples")
+ Q
+ ;
diff --git a/p/C0SMART.m b/p/C0SMART.m
index 1f72e7f..a432532 100644
--- a/p/C0SMART.m
+++ b/p/C0SMART.m
@@ -1,56 +1,56 @@
-C0SMART ; GPL - Smart Container Entry Points;2/22/12 17:05
- ;;0.1;C0S;nopatch;noreleasedate;Build 2
- ;Copyright 2012 George Lilly. Licensed under the terms of the GNU
- ;General Public License See attached copy of the License.
- ;
- ;This program is free software; you can redistribute it and/or modify
- ;it under the terms of the GNU General Public License as published by
- ;the Free Software Foundation; either version 2 of the License, or
- ;(at your option) any later version.
- ;
- ;This program is distributed in the hope that it will be useful,
- ;but WITHOUT ANY WARRANTY; without even the implied warranty of
- ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- ;GNU General Public License for more details.
- ;
- ;You should have received a copy of the GNU General Public License along
- ;with this program; if not, write to the Free Software Foundation, Inc.,
- ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
- ;
- Q
-EN(ZRTN,ZPATID,ZTYP,ZFORM,DEBUG) ; return a Smart RDF file section ZTYP
- ; for patient ZPATID; ZFORM defaults to rdf
- ; ZRTN is passed by reference
- ; For now, ZPATID is the DFN
- ;
- I '$D(ZFORM) S ZFORM="rdf"
- K ZRTN ; CLEAN RETURN
- N C0SARY
- I ZTYP="patient" D EN^C0SNHIN(.C0SARY,ZPATID,"patient")
- E D EN^C0SNHIN(.C0SARY,ZPATID,"patient;"_ZTYP)
- I $G(C0SARY("patient",1,"id@value"))'=ZPATID D Q ;
- . W !,"Error Retreiving Patient Record"
- ;
- K C0XFDA
- ;
- N C0SGR ; graph
- ;
- ; processing table
- ;
- N C0SCTRL
- S C0SCTRL("med")="D MED^C0SMED(.C0SGR,.C0SARY)"
- S C0SCTRL("patient")="D PATIENT^C0SDEM(.C0SGR,.C0SARY)"
- S C0SCTRL("lab")="D LAB^C0SLAB(.C0SGR,.C0SARY)"
- S C0SCTRL("problem")="D PROB^C0SPROB2(.C0SGR,.C0SARY)"
- ;
- I '$D(C0SCTRL(ZTYP)) W !,ZTYP," ","Not Supported" Q ;
- N ZX
- S ZX=C0SCTRL(ZTYP)
- X ZX ;
- ;
- I '$D(C0SGR) Q ;
- ;
- D getGraph^C0XGET1(.ZRTN,C0SGR,ZFORM)
- ;
- Q
- ;
+C0SMART ; GPL - Smart Container Entry Points;2/22/12 17:05
+ ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
+ ;Copyright 2012 George Lilly. Licensed under the terms of the GNU
+ ;General Public License See attached copy of the License.
+ ;
+ ;This program is free software; you can redistribute it and/or modify
+ ;it under the terms of the GNU General Public License as published by
+ ;the Free Software Foundation; either version 2 of the License, or
+ ;(at your option) any later version.
+ ;
+ ;This program is distributed in the hope that it will be useful,
+ ;but WITHOUT ANY WARRANTY; without even the implied warranty of
+ ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ ;GNU General Public License for more details.
+ ;
+ ;You should have received a copy of the GNU General Public License along
+ ;with this program; if not, write to the Free Software Foundation, Inc.,
+ ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+ ;
+ Q
+EN(ZRTN,ZPATID,ZTYP,ZFORM,DEBUG) ; return a Smart RDF file section ZTYP
+ ; for patient ZPATID; ZFORM defaults to rdf
+ ; ZRTN is passed by reference
+ ; For now, ZPATID is the DFN
+ ;
+ I '$D(ZFORM) S ZFORM="rdf"
+ K ZRTN ; CLEAN RETURN
+ N C0SARY
+ I ZTYP="patient" D EN^C0SNHIN(.C0SARY,ZPATID,"patient")
+ E D EN^C0SNHIN(.C0SARY,ZPATID,"patient;"_ZTYP)
+ I $G(C0SARY("patient",1,"id@value"))'=ZPATID D Q ;
+ . W !,"Error Retreiving Patient Record"
+ ;
+ K C0XFDA
+ ;
+ N C0SGR ; graph
+ ;
+ ; processing table
+ ;
+ N C0SCTRL
+ S C0SCTRL("med")="D MED^C0SMED(.C0SGR,.C0SARY)"
+ S C0SCTRL("patient")="D PATIENT^C0SDEM(.C0SGR,.C0SARY)"
+ S C0SCTRL("lab")="D LAB^C0SLAB(.C0SGR,.C0SARY)"
+ S C0SCTRL("problem")="D PROB^C0SPROB2(.C0SGR,.C0SARY)"
+ ;
+ I '$D(C0SCTRL(ZTYP)) W !,ZTYP," ","Not Supported" Q ;
+ N ZX
+ S ZX=C0SCTRL(ZTYP)
+ X ZX ;
+ ;
+ I '$D(C0SGR) Q ;
+ ;
+ D getGraph^C0XGET1(.ZRTN,C0SGR,ZFORM)
+ ;
+ Q
+ ;
diff --git a/p/C0SMED.m b/p/C0SMED.m
index 2568c81..de736bd 100644
--- a/p/C0SMED.m
+++ b/p/C0SMED.m
@@ -1,157 +1,157 @@
-C0SMED ; GPL - Smart Meds Processing ;2/22/12 17:05
- ;;0.1;C0S;nopatch;noreleasedate;Build 2
- ;Copyright 2012 George Lilly. Licensed under the terms of the GNU
- ;General Public License See attached copy of the License.
- ;
- ;This program is free software; you can redistribute it and/or modify
- ;it under the terms of the GNU General Public License as published by
- ;the Free Software Foundation; either version 2 of the License, or
- ;(at your option) any later version.
- ;
- ;This program is distributed in the hope that it will be useful,
- ;but WITHOUT ANY WARRANTY; without even the implied warranty of
- ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- ;GNU General Public License for more details.
- ;
- ;You should have received a copy of the GNU General Public License along
- ;with this program; if not, write to the Free Software Foundation, Inc.,
- ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
- ;
- Q
- ;
-MED(GRTN,C0SARY) ; GRTN, passed by reference,
- ; is the return name of the graph created. "" if none
- ; C0SARY is passed in by reference and is the NHIN array of meds
- ;
- I $O(C0SARY("med",""))="" D Q ;
- . I $D(DEBUG) W !,"No Meds"
- S GRTN="" ; default to no meds
- N C0SGRF
- S C0SGRF="vistaSmart:"_ZPATID_"/"_ZTYP
- I $D(DEBUG) W !,"Processing ",C0SGRF
- D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
- N MEDTRP ; MEDS TRIPLES
- D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
- N FARY S FARY="C0XFARY"
- D USEFARY^C0XF2N(FARY)
- D VOCINIT^C0XUTIL
- ;
- N DUPCHK S DUPCHK="" ; check for no duplicates
- N ZI S ZI=""
- F S ZI=$O(C0SARY("med",ZI)) Q:ZI="" D ;
- . N SDATE,SDTMP
- . I $G(C0SARY("med",ZI,"vaStatus@value"))="EXPIRED" D Q ;
- . . I $D(DEBUG) W !,"Expired Mediation, Skipping"
- . I $G(COSARY("med",ZI,"vaType@value"))="I" D Q ;
- . . I $D(DEBUG) W !,"Inpatient Med, skipping"
- . I $G(COSARY("med",ZI,"vaType@value"))="V" D Q ;
- . . I $D(DEBUG) W !,"IV Inpatient Med, skipping"
- . ;
- . S SDTMP=$G(C0SARY("med",ZI,"ordered@value"))
- . I SDTMP="" D ;
- . . S SDTMP=$G(C0SARY("med",ZI,"start@value"))
- . S SDATE=$$FMTE^XLFDT(SDTMP,"7D") ; ordered date
- . S SDATE=$TR(SDATE,"/","-") ; change slashes to hyphens
- . I SDATE="" S SDATE="UNKNOWN"
- . N DNAME,VUID,DCODE,RXNORM,SIG
- . S DNAME=$G(C0SARY("med",ZI,"name@value"))
- . I DNAME="" D ;
- . . S DNAME=$G(C0SARY("med",ZI,"products.product@name"))
- . S VUID=$G(C0SARY("med",ZI,"products.product.vaProduct@vuid"))
- . S DCODE=$G(C0SARY("med",ZI,"products.product.vaProduct@code"))
- . I DCODE="" S DCODE=$G(C0SARY("med",ZI,"id@value"))
- . S RXNORM=$$RXCUI(VUID) ; look up RxNorm code
- . I $P(RXNORM,"^",2)="RXNORM" D ;
- . . S RXVER=$P(RXNORM,"^",3)
- . . S RXNORM=$P(RXNORM,"^",1)
- . E D Q ;
- . . I $D(DEBUG) W !,"NO RXNORM NUMBER AVAILABLE"
- . . I $D(DEBUG) W !,RXNORM
- . I DNAME="" D Q ;
- . . I $D(DEBUG) W !,"Error No Drug Name"
- . S MEDGRF=C0SGRF_"/"_DCODE_"-"_$G(SDTMP)
- . I +$D(DUPCHK(MEDGRF)) D Q ; NO DUPS ALLOWED
- . . I $D(DEBUG) W !,"Found Duplicate Medication ",MEDGRF
- . S DUPCHK(MEDGRF)=""
- . I $D(DEBUG) D ;
- . . W !,"Processing Medication ",MEDGRF
- . . W !,DNAME
- . . W !,RXNORM
- . S SIG=$G(C0SARY("med",ZI,"sig"))
- . I SIG["|" D ;
- . . N SIGTMP
- . . S SIGTMP=SIG
- . . S SIG=$P(SIGTMP,"|",2) ; remove the drug name from the sig
- . . I DNAME["FREE TXT" D ; eRx free text drug, get drug name from sig
- . . . S DNAME=$P(SIGTMP,"|",1) ; eRx Drug name is stored as the first piece of the sig
- . K C0XFARY
- . D ADD^C0XF2N(C0SGRF,MEDGRF,"rdf:type","sp:Medication",FARY)
- . D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:belongsTo",C0SGRF,FARY)
- . N DSUBJ S DSUBJ=$$ANONS^C0XF2N ; anonomous subject
- . D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:drugName",DSUBJ,FARY)
- . I SIG'="" D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:instructions",SIG,FARY)
- . N NQTY,NQTY2,NFREQ,NFREQ2
- . S NQTY=$$ANONS^C0XF2N ; anonomous subject
- . D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:quantity",NQTY,FARY)
- . S NQTY2=$$ANONS^C0XF2N ; anonomous subject
- . D ADD^C0XF2N(C0SGRF,NQTY,"sp:ValueAndUnit",NQTY2,FARY)
- . N DOSE S DOSE=$G(C0SARY("med",ZI,"doses.dose@dose"))
- . I DOSE="" S DOSE="UNKNOWN"
- . N UNIT S UNIT=$G(C0SARY("med",ZI,"doses.dose@units"))
- . I UNIT="" S UNIT="UNKNOWN"
- . D ADD^C0XF2N(C0SGRF,NQTY2,"sp:value",DOSE,FARY)
- . D ADD^C0XF2N(C0SGRF,NQTY2,"sp:unit",UNIT,FARY)
- . S NFREQ=$$ANONS^C0XF2N ; anonomous subject
- . S NFREQ2=$$ANONS^C0XF2N ; anonomous subject
- . D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:frequency",NFREQ,FARY)
- . D ADD^C0XF2N(C0SGRF,NFREQ,"sp:ValueAndUnit",NFREQ2,FARY)
- . N SCHED S SCHED=$G(C0SARY("med",ZI,"doses.dose@schedule"))
- . I SCHED="" S SCHED="UNKNOWN"
- . N SCHUNIT S SCHUNIT=$G(C0SARY("med",ZI,"doses.dose@route"))
- . I SCHUNIT="" S SCHUNIT="UNKNOWN"
- . D ADD^C0XF2N(C0SGRF,NFREQ2,"sp:value",SCHED,FARY)
- . D ADD^C0XF2N(C0SGRF,NFREQ2,"sp:unit",SCHUNIT,FARY)
- . D ADD^C0XF2N(C0SGRF,DSUBJ,"rdf:type","sp:CodedValue",FARY)
- . D ADD^C0XF2N(C0SGRF,DSUBJ,"sp:code","rxnorm:"_RXNORM,FARY)
- . D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"rdf:type","sp:Code",FARY)
- . D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"dcterms:title",DNAME,FARY)
- . D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"sp:system","rxnorm:",FARY)
- . D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"dcterms:identifier",RXNORM,FARY)
- . D ADD^C0XF2N(C0SGRF,DSUBJ,"dcterms:title",DNAME,FARY)
- . D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:startDate",SDATE,FARY)
- . D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"rdf:type","http://smartplatforms.org/terms/codes/RxNorm_Semantic",FARY)
- . D BULKLOAD^C0XF2N(.C0XFDA)
- . K C0XFDA
- S GRTN=C0SGRF
- q
- ;
-RXNFN() Q 1130590011.001 ; RxNorm Concepts file number
- ;
-RXCUI(ZVUID) ; EXTRINSIC WHICH RETURNS THE RXNORM CODE IF KNOWN OF
- ; THE VUID - RETURNS CODE^SYSTEM^VERSION TO USE IN THE CCR
- N ZRSLT S ZRSLT=ZVUID_"^"_"VUID"_"^" ; DEFAULT
- I $G(ZVUID)="" Q ""
- I '$D(^C0P("RXN")) Q ZRSLT ; ERX NOT INSTALLED
- N C0PIEN ; S C0PIEN=$$FIND1^DIC($$RXNFN,"","QX",ZVUID,"VUID")
- S C0PIEN=$O(^C0P("RXN","VUID",ZVUID,"")) ;GPL FIX FOR MULTIPLES
- N ZRXN S ZRXN=$$GET1^DIQ($$RXNFN,C0PIEN,.01)
- S ZRXN=$$NISTMAP(ZRXN) ; CHANGE THE CODE IF NEEDED
- I ZRXN'="" S ZRSLT=ZRXN_"^RXNORM^08AB_081201F"
- Q ZRSLT
- ;
-NISTMAP(ZRXN) ; EXTRINSIC WHICH MAPS SOME RXNORM NUMBERS TO
- ; CONFORM TO NIST REQUIREMENTS
- ;INPATIENT CERTIFICATION
- I ZRXN=309362 S ZRXN=213169
- I ZRXN=855318 S ZRXN=855320
- I ZRXN=197361 S ZRXN=212549
- ;OUTPATIENT CERTIFICATION
- I ZRXN=310534 S ZRXN=205875
- I ZRXN=617312 S ZRXN=617314
- I ZRXN=310429 S ZRXN=200801
- I ZRXN=628953 S ZRXN=628958
- I ZRXN=745679 S ZRXN=630208
- I ZRXN=311564 S ZRXN=979334
- I ZRXN=836343 S ZRXN=836370
- Q ZRXN
- ;
+C0SMED ; GPL - Smart Meds Processing ;2/22/12 17:05
+ ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
+ ;Copyright 2012 George Lilly. Licensed under the terms of the GNU
+ ;General Public License See attached copy of the License.
+ ;
+ ;This program is free software; you can redistribute it and/or modify
+ ;it under the terms of the GNU General Public License as published by
+ ;the Free Software Foundation; either version 2 of the License, or
+ ;(at your option) any later version.
+ ;
+ ;This program is distributed in the hope that it will be useful,
+ ;but WITHOUT ANY WARRANTY; without even the implied warranty of
+ ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ ;GNU General Public License for more details.
+ ;
+ ;You should have received a copy of the GNU General Public License along
+ ;with this program; if not, write to the Free Software Foundation, Inc.,
+ ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+ ;
+ Q
+ ;
+MED(GRTN,C0SARY) ; GRTN, passed by reference,
+ ; is the return name of the graph created. "" if none
+ ; C0SARY is passed in by reference and is the NHIN array of meds
+ ;
+ I $O(C0SARY("med",""))="" D Q ;
+ . I $D(DEBUG) W !,"No Meds"
+ S GRTN="" ; default to no meds
+ N C0SGRF
+ S C0SGRF="vistaSmart:"_ZPATID_"/"_ZTYP
+ I $D(DEBUG) W !,"Processing ",C0SGRF
+ D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
+ N MEDTRP ; MEDS TRIPLES
+ D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
+ N FARY S FARY="C0XFARY"
+ D USEFARY^C0XF2N(FARY)
+ D VOCINIT^C0XUTIL
+ ;
+ N DUPCHK S DUPCHK="" ; check for no duplicates
+ N ZI S ZI=""
+ F S ZI=$O(C0SARY("med",ZI)) Q:ZI="" D ;
+ . N SDATE,SDTMP
+ . I $G(C0SARY("med",ZI,"vaStatus@value"))="EXPIRED" D Q ;
+ . . I $D(DEBUG) W !,"Expired Mediation, Skipping"
+ . I $G(COSARY("med",ZI,"vaType@value"))="I" D Q ;
+ . . I $D(DEBUG) W !,"Inpatient Med, skipping"
+ . I $G(COSARY("med",ZI,"vaType@value"))="V" D Q ;
+ . . I $D(DEBUG) W !,"IV Inpatient Med, skipping"
+ . ;
+ . S SDTMP=$G(C0SARY("med",ZI,"ordered@value"))
+ . I SDTMP="" D ;
+ . . S SDTMP=$G(C0SARY("med",ZI,"start@value"))
+ . S SDATE=$$FMTE^XLFDT(SDTMP,"7D") ; ordered date
+ . S SDATE=$TR(SDATE,"/","-") ; change slashes to hyphens
+ . I SDATE="" S SDATE="UNKNOWN"
+ . N DNAME,VUID,DCODE,RXNORM,SIG
+ . S DNAME=$G(C0SARY("med",ZI,"name@value"))
+ . I DNAME="" D ;
+ . . S DNAME=$G(C0SARY("med",ZI,"products.product@name"))
+ . S VUID=$G(C0SARY("med",ZI,"products.product.vaProduct@vuid"))
+ . S DCODE=$G(C0SARY("med",ZI,"products.product.vaProduct@code"))
+ . I DCODE="" S DCODE=$G(C0SARY("med",ZI,"id@value"))
+ . S RXNORM=$$RXCUI(VUID) ; look up RxNorm code
+ . I $P(RXNORM,"^",2)="RXNORM" D ;
+ . . S RXVER=$P(RXNORM,"^",3)
+ . . S RXNORM=$P(RXNORM,"^",1)
+ . E D Q ;
+ . . I $D(DEBUG) W !,"NO RXNORM NUMBER AVAILABLE"
+ . . I $D(DEBUG) W !,RXNORM
+ . I DNAME="" D Q ;
+ . . I $D(DEBUG) W !,"Error No Drug Name"
+ . S MEDGRF=C0SGRF_"/"_DCODE_"-"_$G(SDTMP)
+ . I +$D(DUPCHK(MEDGRF)) D Q ; NO DUPS ALLOWED
+ . . I $D(DEBUG) W !,"Found Duplicate Medication ",MEDGRF
+ . S DUPCHK(MEDGRF)=""
+ . I $D(DEBUG) D ;
+ . . W !,"Processing Medication ",MEDGRF
+ . . W !,DNAME
+ . . W !,RXNORM
+ . S SIG=$G(C0SARY("med",ZI,"sig"))
+ . I SIG["|" D ;
+ . . N SIGTMP
+ . . S SIGTMP=SIG
+ . . S SIG=$P(SIGTMP,"|",2) ; remove the drug name from the sig
+ . . I DNAME["FREE TXT" D ; eRx free text drug, get drug name from sig
+ . . . S DNAME=$P(SIGTMP,"|",1) ; eRx Drug name is stored as the first piece of the sig
+ . K C0XFARY
+ . D ADD^C0XF2N(C0SGRF,MEDGRF,"rdf:type","sp:Medication",FARY)
+ . D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:belongsTo",C0SGRF,FARY)
+ . N DSUBJ S DSUBJ=$$ANONS^C0XF2N ; anonomous subject
+ . D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:drugName",DSUBJ,FARY)
+ . I SIG'="" D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:instructions",SIG,FARY)
+ . N NQTY,NQTY2,NFREQ,NFREQ2
+ . S NQTY=$$ANONS^C0XF2N ; anonomous subject
+ . D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:quantity",NQTY,FARY)
+ . S NQTY2=$$ANONS^C0XF2N ; anonomous subject
+ . D ADD^C0XF2N(C0SGRF,NQTY,"sp:ValueAndUnit",NQTY2,FARY)
+ . N DOSE S DOSE=$G(C0SARY("med",ZI,"doses.dose@dose"))
+ . I DOSE="" S DOSE="UNKNOWN"
+ . N UNIT S UNIT=$G(C0SARY("med",ZI,"doses.dose@units"))
+ . I UNIT="" S UNIT="UNKNOWN"
+ . D ADD^C0XF2N(C0SGRF,NQTY2,"sp:value",DOSE,FARY)
+ . D ADD^C0XF2N(C0SGRF,NQTY2,"sp:unit",UNIT,FARY)
+ . S NFREQ=$$ANONS^C0XF2N ; anonomous subject
+ . S NFREQ2=$$ANONS^C0XF2N ; anonomous subject
+ . D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:frequency",NFREQ,FARY)
+ . D ADD^C0XF2N(C0SGRF,NFREQ,"sp:ValueAndUnit",NFREQ2,FARY)
+ . N SCHED S SCHED=$G(C0SARY("med",ZI,"doses.dose@schedule"))
+ . I SCHED="" S SCHED="UNKNOWN"
+ . N SCHUNIT S SCHUNIT=$G(C0SARY("med",ZI,"doses.dose@route"))
+ . I SCHUNIT="" S SCHUNIT="UNKNOWN"
+ . D ADD^C0XF2N(C0SGRF,NFREQ2,"sp:value",SCHED,FARY)
+ . D ADD^C0XF2N(C0SGRF,NFREQ2,"sp:unit",SCHUNIT,FARY)
+ . D ADD^C0XF2N(C0SGRF,DSUBJ,"rdf:type","sp:CodedValue",FARY)
+ . D ADD^C0XF2N(C0SGRF,DSUBJ,"sp:code","rxnorm:"_RXNORM,FARY)
+ . D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"rdf:type","sp:Code",FARY)
+ . D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"dcterms:title",DNAME,FARY)
+ . D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"sp:system","rxnorm:",FARY)
+ . D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"dcterms:identifier",RXNORM,FARY)
+ . D ADD^C0XF2N(C0SGRF,DSUBJ,"dcterms:title",DNAME,FARY)
+ . D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:startDate",SDATE,FARY)
+ . D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"rdf:type","http://smartplatforms.org/terms/codes/RxNorm_Semantic",FARY)
+ . D BULKLOAD^C0XF2N(.C0XFDA)
+ . K C0XFDA
+ S GRTN=C0SGRF
+ q
+ ;
+RXNFN() Q 1130590011.001 ; RxNorm Concepts file number
+ ;
+RXCUI(ZVUID) ; EXTRINSIC WHICH RETURNS THE RXNORM CODE IF KNOWN OF
+ ; THE VUID - RETURNS CODE^SYSTEM^VERSION TO USE IN THE CCR
+ N ZRSLT S ZRSLT=ZVUID_"^"_"VUID"_"^" ; DEFAULT
+ I $G(ZVUID)="" Q ""
+ I '$D(^C0P("RXN")) Q ZRSLT ; ERX NOT INSTALLED
+ N C0PIEN ; S C0PIEN=$$FIND1^DIC($$RXNFN,"","QX",ZVUID,"VUID")
+ S C0PIEN=$O(^C0P("RXN","VUID",ZVUID,"")) ;GPL FIX FOR MULTIPLES
+ N ZRXN S ZRXN=$$GET1^DIQ($$RXNFN,C0PIEN,.01)
+ S ZRXN=$$NISTMAP(ZRXN) ; CHANGE THE CODE IF NEEDED
+ I ZRXN'="" S ZRSLT=ZRXN_"^RXNORM^08AB_081201F"
+ Q ZRSLT
+ ;
+NISTMAP(ZRXN) ; EXTRINSIC WHICH MAPS SOME RXNORM NUMBERS TO
+ ; CONFORM TO NIST REQUIREMENTS
+ ;INPATIENT CERTIFICATION
+ I ZRXN=309362 S ZRXN=213169
+ I ZRXN=855318 S ZRXN=855320
+ I ZRXN=197361 S ZRXN=212549
+ ;OUTPATIENT CERTIFICATION
+ I ZRXN=310534 S ZRXN=205875
+ I ZRXN=617312 S ZRXN=617314
+ I ZRXN=310429 S ZRXN=200801
+ I ZRXN=628953 S ZRXN=628958
+ I ZRXN=745679 S ZRXN=630208
+ I ZRXN=311564 S ZRXN=979334
+ I ZRXN=836343 S ZRXN=836370
+ Q ZRXN
+ ;
diff --git a/p/C0SMXMLB.m b/p/C0SMXMLB.m
index ecefc52..45f54e5 100644
--- a/p/C0SMXMLB.m
+++ b/p/C0SMXMLB.m
@@ -1,106 +1,106 @@
-MXMLBLD ;;ISF/RWF - Tool to build XML ;07/09/09 16:55 - Smart Container Ver.
- ;;8.0;KERNEL;;;Build 2
- QUIT
- ;
- ;DOC - The top level tag
- ;DOCTYPE - Want to include a DOCTYPE node
- ;FLAG - Set to 'G' to store the output in the global ^TMP("MXMLBLD",$J,
-START(DOC,DOCTYPE,FLAG,NO1ST) ;Call this once at the begining.
- K ^TMP("MXMLBLD",$J)
- S ^TMP("MXMLBLD",$J,"DOC")=DOC,^TMP("MXMLBLD",$J,"STK")=0
- I $G(FLAG)["G" S ^TMP("MXMLBLD",$J,"CNT")=1
- I $G(NO1ST)'=1 D OUTPUT($$XMLHDR)
- D:$L($G(DOCTYPE)) OUTPUT("") D OUTPUT("<"_DOC_">")
- Q
- ;
-END ;Call this once to close out the document
- D OUTPUT("")
- I '$G(^TMP("MXMLBLD",$J,"CNT")) K ^TMP("MXMLBLD",$J)
- K ^TMP("MXMLBLD",$J,"DOC"),^("CNT"),^("STK")
- Q
- ;
-ITEM(INDENT,TAG,ATT,VALUE) ;Output a Item
- N I,X
- S ATT=$G(ATT)
- I '$D(VALUE) D OUTPUT($$BLS($G(INDENT))_"<"_TAG_$$ATT(.ATT)_" />") Q
- D OUTPUT($$BLS($G(INDENT))_"<"_TAG_$$ATT(.ATT)_">"_$$CHARCHK(VALUE)_"")
- Q
- ;DOITEM is a callback to output the lower level.
-MULTI(INDENT,TAG,ATT,DOITEM) ;Output a Multipule
- N I,X,S
- S ATT=$G(ATT)
- D PUSH($G(INDENT),TAG,.ATT)
- D @DOITEM
- D POP
- Q
- ;
-ATT(ATT) ;Output a string of attributes
- I $D(ATT)<9 Q ""
- N I,S,V
- S S="",I=""
- F S I=$O(ATT(I)) Q:I="" S S=S_" "_I_"="_$$Q(ATT(I))
- Q S
- ;
-Q(X) ;Add Quotes - Changed by gpl to use single instead of double quotes 6/11
- ;I X'[$C(34) Q $C(34)_X_$C(34)
- I X'[$C(39) Q $C(39)_X_$C(39)
- ;N Q,Y,I,Z S Q=$C(34),(Y,Z)=""
- N Q,Y,I,Z S Q=$C(39),(Y,Z)=""
- F I=1:1:$L(X,Q)-1 S Y=Y_$P(X,Q,I)_Q_Q
- S Y=Y_$P(X,Q,$L(X,Q))
- ;Q $C(34)_Y_$C(34)
- Q $C(39)_Y_$C(39)
- ;
-XMLHDR() ; -- provides current XML standard header
- Q ""
- ;
-OUTPUT(S) ;Output
- N C S C=$G(^TMP("MXMLBLD",$J,"CNT"))
- I C S ^TMP("MXMLBLD",$J,C)=S,^TMP("MXMLBLD",$J,"CNT")=C+1 Q
- W S,!
- Q
- ;
-CHARCHK(STR) ; -- replace xml character limits with entities
- N A,I,X,Y,Z,NEWSTR
- S (Y,Z)=""
- ;IF STR["&" SET NEWSTR=STR DO SET STR=Y_Z
- ;. FOR X=1:1 SET Y=Y_$PIECE(NEWSTR,"&",X)_"&",Z=$PIECE(STR,"&",X+1,999) QUIT:Z'["&"
- I STR["&" F I=1:1:$L(STR,"&")-1 S STR=$P(STR,"&",1,I)_"&"_$P(STR,"&",I+1,999)
- I STR["<" F S STR=$PIECE(STR,"<",1)_"<"_$PIECE(STR,"<",2,99) Q:STR'["<"
- I STR[">" F S STR=$PIECE(STR,">",1)_">"_$PIECE(STR,">",2,99) Q:STR'[">"
- I STR["'" F S STR=$PIECE(STR,"'",1)_"'"_$PIECE(STR,"'",2,99) Q:STR'["'"
- I STR["""" F S STR=$PIECE(STR,"""",1)_"""_$PIECE(STR,"""",2,99) Q:STR'[""""
- ;
- S STR=$TR(STR,$C(0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31))
- QUIT STR
- ;
-COMMENT(VAL) ;Add Comments
- N I,L
- ;I $D($G(VAL))=1 D OUTPUT("") Q
- I $D(VAL) D OUTPUT("") Q ;CHANGED BY GPL FOR GTM
- S I="",L="")
- Q
- ;
-PUSH(INDENT,TAG,ATT) ;Write a TAG and save.
- N CNT
- S ATT=$G(ATT)
- D OUTPUT($$BLS($G(INDENT))_"<"_TAG_$$ATT(.ATT)_">")
- S CNT=$G(^TMP("MXMLBLD",$J,"STK"))+1,^TMP("MXMLBLD",$J,"STK")=CNT,^TMP("MXMLBLD",$J,"STK",CNT)=INDENT_"^"_TAG
- Q
- ;
-POP ;Write last pushed tag and pop
- N CNT,TAG,INDENT,X
- S CNT=$G(^TMP("MXMLBLD",$J,"STK")),X=^TMP("MXMLBLD",$J,"STK",CNT),^TMP("MXMLBLD",$J,"STK")=CNT-1
- S INDENT=+X,TAG=$P(X,"^",2)
- D OUTPUT($$BLS(INDENT)_"")
- Q
- ;
-BLS(I) ;Return INDENT string
- N S
- S S="",I=$G(I) S:I>0 $P(S," ",I)=" "
- Q S
- ;
-INDENT() ;Renturn indent level
- Q +$G(^TMP("MXMLBLD",$J,"STK"))
+MXMLBLD ;;ISF/RWF - Tool to build XML ;07/09/09 16:55 - Smart Container Ver.
+ ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
+ QUIT
+ ;
+ ;DOC - The top level tag
+ ;DOCTYPE - Want to include a DOCTYPE node
+ ;FLAG - Set to 'G' to store the output in the global ^TMP("MXMLBLD",$J,
+START(DOC,DOCTYPE,FLAG,NO1ST) ;Call this once at the begining.
+ K ^TMP("MXMLBLD",$J)
+ S ^TMP("MXMLBLD",$J,"DOC")=DOC,^TMP("MXMLBLD",$J,"STK")=0
+ I $G(FLAG)["G" S ^TMP("MXMLBLD",$J,"CNT")=1
+ I $G(NO1ST)'=1 D OUTPUT($$XMLHDR)
+ D:$L($G(DOCTYPE)) OUTPUT("") D OUTPUT("<"_DOC_">")
+ Q
+ ;
+END ;Call this once to close out the document
+ D OUTPUT("")
+ I '$G(^TMP("MXMLBLD",$J,"CNT")) K ^TMP("MXMLBLD",$J)
+ K ^TMP("MXMLBLD",$J,"DOC"),^("CNT"),^("STK")
+ Q
+ ;
+ITEM(INDENT,TAG,ATT,VALUE) ;Output a Item
+ N I,X
+ S ATT=$G(ATT)
+ I '$D(VALUE) D OUTPUT($$BLS($G(INDENT))_"<"_TAG_$$ATT(.ATT)_" />") Q
+ D OUTPUT($$BLS($G(INDENT))_"<"_TAG_$$ATT(.ATT)_">"_$$CHARCHK(VALUE)_"")
+ Q
+ ;DOITEM is a callback to output the lower level.
+MULTI(INDENT,TAG,ATT,DOITEM) ;Output a Multipule
+ N I,X,S
+ S ATT=$G(ATT)
+ D PUSH($G(INDENT),TAG,.ATT)
+ D @DOITEM
+ D POP
+ Q
+ ;
+ATT(ATT) ;Output a string of attributes
+ I $D(ATT)<9 Q ""
+ N I,S,V
+ S S="",I=""
+ F S I=$O(ATT(I)) Q:I="" S S=S_" "_I_"="_$$Q(ATT(I))
+ Q S
+ ;
+Q(X) ;Add Quotes - Changed by gpl to use single instead of double quotes 6/11
+ ;I X'[$C(34) Q $C(34)_X_$C(34)
+ I X'[$C(39) Q $C(39)_X_$C(39)
+ ;N Q,Y,I,Z S Q=$C(34),(Y,Z)=""
+ N Q,Y,I,Z S Q=$C(39),(Y,Z)=""
+ F I=1:1:$L(X,Q)-1 S Y=Y_$P(X,Q,I)_Q_Q
+ S Y=Y_$P(X,Q,$L(X,Q))
+ ;Q $C(34)_Y_$C(34)
+ Q $C(39)_Y_$C(39)
+ ;
+XMLHDR() ; -- provides current XML standard header
+ Q ""
+ ;
+OUTPUT(S) ;Output
+ N C S C=$G(^TMP("MXMLBLD",$J,"CNT"))
+ I C S ^TMP("MXMLBLD",$J,C)=S,^TMP("MXMLBLD",$J,"CNT")=C+1 Q
+ W S,!
+ Q
+ ;
+CHARCHK(STR) ; -- replace xml character limits with entities
+ N A,I,X,Y,Z,NEWSTR
+ S (Y,Z)=""
+ ;IF STR["&" SET NEWSTR=STR DO SET STR=Y_Z
+ ;. FOR X=1:1 SET Y=Y_$PIECE(NEWSTR,"&",X)_"&",Z=$PIECE(STR,"&",X+1,999) QUIT:Z'["&"
+ I STR["&" F I=1:1:$L(STR,"&")-1 S STR=$P(STR,"&",1,I)_"&"_$P(STR,"&",I+1,999)
+ I STR["<" F S STR=$PIECE(STR,"<",1)_"<"_$PIECE(STR,"<",2,99) Q:STR'["<"
+ I STR[">" F S STR=$PIECE(STR,">",1)_">"_$PIECE(STR,">",2,99) Q:STR'[">"
+ I STR["'" F S STR=$PIECE(STR,"'",1)_"'"_$PIECE(STR,"'",2,99) Q:STR'["'"
+ I STR["""" F S STR=$PIECE(STR,"""",1)_"""_$PIECE(STR,"""",2,99) Q:STR'[""""
+ ;
+ S STR=$TR(STR,$C(0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31))
+ QUIT STR
+ ;
+COMMENT(VAL) ;Add Comments
+ N I,L
+ ;I $D($G(VAL))=1 D OUTPUT("") Q
+ I $D(VAL) D OUTPUT("") Q ;CHANGED BY GPL FOR GTM
+ S I="",L="")
+ Q
+ ;
+PUSH(INDENT,TAG,ATT) ;Write a TAG and save.
+ N CNT
+ S ATT=$G(ATT)
+ D OUTPUT($$BLS($G(INDENT))_"<"_TAG_$$ATT(.ATT)_">")
+ S CNT=$G(^TMP("MXMLBLD",$J,"STK"))+1,^TMP("MXMLBLD",$J,"STK")=CNT,^TMP("MXMLBLD",$J,"STK",CNT)=INDENT_"^"_TAG
+ Q
+ ;
+POP ;Write last pushed tag and pop
+ N CNT,TAG,INDENT,X
+ S CNT=$G(^TMP("MXMLBLD",$J,"STK")),X=^TMP("MXMLBLD",$J,"STK",CNT),^TMP("MXMLBLD",$J,"STK")=CNT-1
+ S INDENT=+X,TAG=$P(X,"^",2)
+ D OUTPUT($$BLS(INDENT)_"")
+ Q
+ ;
+BLS(I) ;Return INDENT string
+ N S
+ S S="",I=$G(I) S:I>0 $P(S," ",I)=" "
+ Q S
+ ;
+INDENT() ;Renturn indent level
+ Q +$G(^TMP("MXMLBLD",$J,"STK"))
diff --git a/p/C0SNHIN.m b/p/C0SNHIN.m
index 7129123..c051310 100644
--- a/p/C0SNHIN.m
+++ b/p/C0SNHIN.m
@@ -1,324 +1,324 @@
-C0SNHIN ; GPL - Smart Container - OUTPUT OF NHINV ROUTINES;6/3/11 17:05
- ;;0.1;C0S;nopatch;noreleasedate;Build 2
- ;Copyright 2011-2012 George Lilly. Licensed under the terms of the GNU
- ;General Public License See attached copy of the License.
- ;
- ;This program is free software; you can redistribute it and/or modify
- ;it under the terms of the GNU General Public License as published by
- ;the Free Software Foundation; either version 2 of the License, or
- ;(at your option) any later version.
- ;
- ;This program is distributed in the hope that it will be useful,
- ;but WITHOUT ANY WARRANTY; without even the implied warranty of
- ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- ;GNU General Public License for more details.
- ;
- ;You should have received a copy of the GNU General Public License along
- ;with this program; if not, write to the Free Software Foundation, Inc.,
- ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
- ;
- Q
-EN(ZRTN,ZDFN,ZPART,KEEP) ; GENERATE AN NHIN ARRAY FOR A PATIENT
- ;
- K GARY,GNARY,GIDX,C0SDOCID
- K ZRTN
- N GN
- K ^TMP("NHINV",$J) ; CLEAN UP FROM LAST CALL
- K ^TMP("MXMLDOM",$J) ; CLEAN UP DOM
- K ^TMP("MXMLERR",$J) ; CLEAN UP MXML ERRORS
- D GET^C0SNHINV(.GN,ZDFN,ZPART) ; CALL NHINV ROUTINES TO PULL XML
- S GN=$P(GN,")",1)_")" ; CUT OFF THE REST OF LINE PROTOCOL
- S C0SDOCID=$$PARSE(GN,"NHINARRAY") ; PARSE WITH MXML
- D DOMO^C0SDOM(C0SDOCID,"/","ZRTN","GIDX","GARY",,"/results/") ; BLD ARRAYS
- I '$G(KEEP) K GIDX,GARY ; GET RID OF THE ARRAYS UNLESS KEEP=1
- ;D PROCESS("ZRTN",GN,"/result/",$G(KEEP))
- Q
- ;
-PQRI(ZOUT,KEEP) ; RETURN THE NHIN ARRAY FOR THE PQRI XML TEMPLATE
- ;
- N ZG
- S ZG=$NA(^TMP("PQRIXML",$J))
- K @ZG
- D GETXML^C0SMXP(ZG,"PQRIXML") ; GET THE XML FROM C0S MISC XML
- N C0SDOCID
- S C0SDOCID=$$PARSE^C0SDOM(ZG,"PQRIXML") ; PARSE THE XML
- D DOMO^C0SDOM(C0SDOCID,"/","ZOUT","GIDX","GARY",,"//submission") ; BLD ARRAYS
- I '$G(KEEP) K GIDX,GARY ; GET RID OF THE ARRAYS UNLESS KEEP=1
- Q
- ;
-PQRI2(ZRTN) ; RETURN THE NHIN ARRAY FOR PQRI ONE MEASURE
- ;
- ;N GG
- D GETXML^C0SMXP("GG","PQRI ONE MEASURE")
- D PROCESS(ZRTN,"GG","root",1)
- Q
- ;
-PROCESS(ZRSLT,ZXML,ZREDUCE,KEEP) ; PARSE AND RUN DOMO ON XML
- ; ZRTN IS PASSED BY REFERENCE
- ; ZXML IS PASSED BY NAME
- ; IF KEEP IS 1, GARY AND GIDX ARE NOT KILLED
- ;
- N GN
- S GN=$NA(^TMP("C0SPROCESS",$J))
- K @GN
- M @GN=@ZXML
- S C0SDOCID=$$PARSE(GN,"NHINARRAY") ; PARSE WITH MXML
- K @GN
- D DOMO^C0SDOM(C0SDOCID,"/","ZRSLT","GIDX","GARY",,$G(ZREDUCE)) ; BLD ARRAYS
- I '$G(KEEP) K GIDX,GARY ; GET RID OF THE ARRAYS UNLESS KEEP=1
- Q
- ;
-LOADSMRT ;
- ;
- K ^GPL("SMART")
- S GN=$NA(^GPL("SMART",1))
- I $$FTG^%ZISH("/home/george/","alex-lewis2.xml",GN,2) W !,"SMART FILE LOADED"
- Q
- ;
-SMART ; TRY IT WITH SMART
- ;
- S GN=$NA(^GPL("SMART"))
- ;K ^TMP("MXMLDOM",$J)
- K ^TMP("MXMLERR",$J)
- S C0SDOCID=$$PARSE(GN,"SMART")
- D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"//rdf:RDF/")
- ;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
- Q
- ;
-CCR ; TRY IT WITH A CCR
- ;
- S GN=$NA(^GPL("CCR"))
- ;K ^TMP("MXMLDOM",$J)
- K ^TMP("MXMLERR",$J)
- S C0SDOCID=$$PARSE(GN,"CCR")
- D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"//ContinuityOfCareRecord/Body/")
- ;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
- Q
- ;
-MED ; TRY IT WITH A CCR MED SECTION
- ;
- S GN=$NA(^GPL("MED"))
- K ^TMP("MXMLDOM",$J)
- K ^TMP("MXMLERR",$J)
- S C0SDOCID=$$PARSE(GN,"MED")
- D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"//Medications/")
- ;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
- Q
- ;
-CCD ; TRY IT WITH A CCD
- ;
- S GN=$NA(^GPL("CCD"))
- ;K ^TMP("MXMLDOM",$J)
- K ^TMP("MXMLERR",$J)
- S C0SDOCID=$$PARSE(GN,"CCD")
- D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"//ClinicalDocument/component/structuredBody/")
- ;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
- Q
- ;
-TEST1 ; TEST NHINV OUTPUT IN ^GPL("NIHIN")
- ; PARSED WITH MXML
- ; RUN THROUGH XPATH
- K GARY,GIDX,C0SDOCID
- S GN=$NA(^GPL("NHIN"))
- ;S GN=$NA(^GPL("DOMI"))
- S C0SDOCID=$$PARSE(GN,"GPLTEST")
- D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"/results/")
- K ^GPL("GNARY")
- M ^GPL("GNARY")=GNARY
- Q
- ;
-TEST2 ; PUT GNARY THROUGH DOMI AND STORE XML IN ^GPL("DOMI")
- ;
- S GN=$NA(^GPL("GNARY"))
- S C0SDOCID=$$DOMI^C0SDOM(GN,,"results")
- D OUTXML^C0SDOM("G",C0SDOCID)
- K ^GPL("DOMI")
- M ^GPL("DOMI")=G
- Q
- ;
-TEST3 ; TEST NHINV OUTPUT IN ^GPL("NIHIN")
- ; PARSED WITH MXML
- ; RUN THROUGH XPATH
- K GARY,GIDX,C0SDOCID
- ;S GN=$NA(^GPL("NHIN"))
- S GN=$NA(^GPL("DOMI"))
- S C0SDOCID=$$PARSE(GN,"GPLTEST")
- D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"/results/")
- Q
- ;
-DOMO(ZOID,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; RECURSIVE ROUTINE TO POPULATE
- ; THE XPATH INDEX ZXIDX, PASSED BY NAME
- ; THE XPATH ARRAY XPARY, PASSED BY NAME
- ; ZOID IS THE STARTING OID
- ; ZPATH IS THE STARTING XPATH, USUALLY "/"
- ; ZNUM IS THE MULTIPLE NUMBER [x], USUALLY NULL WHEN ON THE TOP NODE
- ; ZREDUX IS THE XPATH REDUCTION STRING, TAKEN OUT OF EACH XPATH IF PRESENT
- I $G(ZREDUX)="" S ZREDUX=""
- N NEWPATH,NARY ; NEWPATH IS AN XPATH NARY IS AN NHIN MUMPS ARRAY
- N NEWNUM S NEWNUM=""
- I $G(ZNUM)>0 S NEWNUM="["_ZNUM_"]"
- S NEWPATH=ZPATH_"/"_$$TAG(ZOID)_NEWNUM ; CREATE THE XPATH FOR THIS NODE
- I $G(ZREDUX)'="" D ; REDUX PROVIDED?
- . N GT S GT=$P(NEWPATH,ZREDUX,2)
- . I GT'="" S NEWPATH=GT
- S @ZXIDX@(NEWPATH)=ZOID ; ADD THE XPATH FOR THIS NODE TO THE XPATH INDEX
- N GA D ATT("GA",ZOID) ; GET ATTRIBUTES FOR THIS NODE
- I $D(GA) D ; PROCESS THE ATTRIBUTES
- . N ZI S ZI=""
- . F S ZI=$O(GA(ZI)) Q:ZI="" D ; FOR EACH ATTRIBUTE
- . . N ZP S ZP=NEWPATH_"/"_ZI ; PATH FOR ATTRIBUTE
- . . S @ZXPARY@(ZP)=GA(ZI) ; ADD THE ATTRIBUTE XPATH TO THE XP ARRAY
- . . I GA(ZI)'="" D ADDNARY(ZP,GA(ZI)) ; ADD THE NHIN ARRAY VALUE
- N GD D DATA("GD",ZOID) ; SEE IF THERE IS DATA FOR THIS NODE
- I $D(GD(2)) D ;
- . M @ZXPARY@(NEWPATH)=GD ; IF MULITPLE DATA MERGE TO THE ARRAY
- E I $D(GD(1)) D ;
- . S @ZXPARY@(NEWPATH)=GD(1) ; IF SINGLE VALUE, ADD TO ARRAY
- . I GD(1)'="" D ADDNARY(NEWPATH,GD(1)) ; ADD TO NHIN ARRAY
- N ZFRST S ZFRST=$$FIRST(ZOID) ; SET FIRST CHILD
- I ZFRST'=0 D ; THERE IS A CHILD
- . N ZNUM
- . N ZMULT S ZMULT=$$ISMULT(ZFRST) ; IS FIRST CHILD A MULTIPLE
- . D DOMO(ZFRST,NEWPATH,ZNARY,ZXIDX,ZXPARY,$S(ZMULT:1,1:""),ZREDUX) ; THE CHILD
- N GNXT S GNXT=$$NXTSIB(ZOID)
- I $$TAG(GNXT)'=$$TAG(ZOID) S ZNUM="" ; RESET COUNTING AFTER MULTIPLES
- I GNXT'=0 D ;
- . N ZMULT S ZMULT=$$ISMULT(GNXT) ; IS THE SIBLING A MULTIPLE?
- . I (ZNUM="")&(ZMULT) D ; SIBLING IS FIRST OF MULTIPLES
- . . N ZNUM S ZNUM=1 ;
- . . D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; DO NEXT SIB
- . E D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,$S(ZNUM>0:ZNUM+1,1:""),ZREDUX) ; SIB
- Q
- ;
-ADDNARY(ZXP,ZVALUE) ; ADD AN NHIN ARRAY VALUE TO ZNARY
- ;
- N ZZI,ZZJ,ZZN
- S ZZI=$P(ZXP,"/",1) ; FIRST PIECE OF XPATH ARRAY
- I ZZI="" Q ; DON'T ADD THIS ONE .. PROBABLY THE //results NODE
- S ZZJ=$P(ZXP,ZZI_"/",2) ; REST OF XPATH ARRAY
- S ZZJ=$TR(ZZJ,"/",".") ; REPLACE / WITH .
- I ZZI'["]" D ; A SINGLETON
- . S ZZN=1
- E D ; THERE IS AN [x] OCCURANCE
- . S ZZN=$P($P(ZZI,"[",2),"]",1) ; PULL OUT THE OCCURANCE
- . S ZZI=$P(ZZI,"[",1) ; TAKE OUT THE [X]
- I ZZJ'="" S @ZNARY@(ZZI,ZZN,ZZJ)=ZVALUE
- Q
- ;
-PARSE(INXML,INDOC) ;CALL THE MXML PARSER ON INXML, PASSED BY NAME
- ; INDOC IS PASSED AS THE DOCUMENT NAME - DON'T KNOW WHERE TO STORE THIS NOW
- ; EXTRINSIC WHICH RETURNS THE DOCID ASSIGNED BY MXML
- ;Q $$EN^MXMLDOM(INXML)
- Q $$EN^MXMLDOM(INXML,"W")
- ;
-ISMULT(ZOID) ; RETURN TRUE IF ZOID IS ONE OF A MULTIPLE
- N ZN
- ;I $$TAG(ZOID)["entry" B
- S ZN=$$NXTSIB(ZOID)
- I ZN'="" Q $$TAG(ZOID)=$$TAG(ZN) ; IF TAG IS THE SAME AS NEXT SIB TAG
- Q 0
- ;
-FIRST(ZOID) ;RETURNS THE OID OF THE FIRST CHILD OF ZOID
- Q $$CHILD^MXMLDOM(C0SDOCID,ZOID)
- ;
-PARENT(ZOID) ;RETURNS THE OID OF THE PARENT OF ZOID
- Q $$PARENT^MXMLDOM(C0SDOCID,ZOID)
- ;
-ATT(RTN,NODE) ;GET ATTRIBUTES FOR ZOID
- S HANDLE=C0SDOCID
- K @RTN
- D GETTXT^MXMLDOM("A")
- Q
- ;
-TAG(ZOID) ; RETURNS THE XML TAG FOR THE NODE
- ;I ZOID=149 B ;GPLTEST
- N X,Y
- S Y=""
- S X=$G(C0SCBK("TAG")) ;IS THERE A CALLBACK FOR THIS ROUTINE
- I X'="" X X ; EXECUTE THE CALLBACK, SHOULD SET Y
- I Y="" S Y=$$NAME^MXMLDOM(C0SDOCID,ZOID)
- Q Y
- ;
-NXTSIB(ZOID) ; RETURNS THE NEXT SIBLING
- Q $$SIBLING^MXMLDOM(C0SDOCID,ZOID)
- ;
-DATA(ZT,ZOID) ; RETURNS DATA FOR THE NODE
- ;N ZT,ZN S ZT=""
- ;S C0SDOM=$NA(^TMP("MXMLDOM",$J,C0SDOCID))
- ;Q $G(@C0SDOM@(ZOID,"T",1))
- S ZN=$$TEXT^MXMLDOM(C0SDOCID,ZOID,ZT)
- Q
- ;
-OUTXML(ZRTN,INID) ; USES C0SMXMLB (MXMLBLD) TO OUTPUT XML FROM AN MXMLDOM
- ;
- S C0SDOCID=INID
- D START^C0SMXMLB($$TAG(1),,"G")
- D NDOUT($$FIRST(1))
- D END^C0SMXMLB ;END THE DOCUMENT
- M @ZRTN=^TMP("MXMLBLD",$J)
- K ^TMP("MXMLBLD",$J)
- Q
- ;
-NDOUT(ZOID) ;CALLBACK ROUTINE - IT IS RECURSIVE
- N ZI S ZI=$$FIRST(ZOID)
- I ZI'=0 D ; THERE IS A CHILD
- . N ZATT D ATT("ZATT",ZOID) ; THESE ARE THE ATTRIBUTES MOVED TO ZATT
- . D MULTI^C0SMXMLB("",$$TAG(ZOID),.ZATT,"NDOUT^C0SMXML(ZI)") ;HAVE CHILDREN
- E D ; NO CHILD - IF NO CHILDREN, A NODE HAS DATA, IS AN ENDPOINT
- . ;W "DOING",ZOID,!
- . N ZD D DATA("ZD",ZOID) ;NODES WITHOUT CHILDREN HAVE DATA
- . N ZATT D ATT("ZATT",ZOID) ;ATTRIBUTES
- . D ITEM^C0SMXMLB("",$$TAG(ZOID),.ZATT,$G(ZD(1))) ;NO CHILDREN
- I $$NXTSIB(ZOID)'=0 D ; THERE IS A SIBLING
- . D NDOUT($$NXTSIB(ZOID)) ;RECURSE FOR SIBLINGS
- Q
- ;
-WNHIN(ZDFN) ; WRITES THE XML OUTPUT OF GET^NHINV TO AN XML FILE
- ;
- N GN,GN2
- D GET^NHINV(.GN,ZDFN) ; EXTRACT THE XML
- S GN2=$NA(@GN@(1))
- W $$OUTPUT^C0SXPATH(GN2,"nhin_"_ZDFN_".xml","/home/wvehr3-09/")
- Q
- ;
-TESTNARY ; TEST MAKING A NHIN ARRAY
- N ZI S ZI=""
- N ZH ; DOM HANDLE
- D TEST1 ; PARSE AN NHIN RESULT INTO THE DOM
- S ZH=C0SDOCID ; SET THE HANDLE
- N ZD S ZD=$NA(^TMP("MXMLDOM",$J,ZH))
- F S ZI=$O(@ZD@(ZI)) Q:ZI="" D ; FOR EACH NODE
- . N ZATT
- . D MNARY(.ZATT,ZH,ZI)
- . N ZPRE,ZN
- . S ZPRE=$$PRE(ZI)
- . S ZN=$P(ZPRE,",",2)
- . S ZPRE=$P(ZPRE,",",1)
- . ;I $D(ZATT) ZWR ZATT
- . N ZJ S ZJ=""
- . F S ZJ=$O(ZATT(ZJ)) Q:ZJ="" D ; FOR EACH ATTRIBUTE
- . . W ZPRE_"["_ZN_"]"_$$TAG(ZI)_"."_ZJ_"="_ZATT(ZJ),!
- . . S GOUT(ZPRE,ZN,$$TAG(ZI)_"."_ZJ)=ZATT(ZJ)
- Q
- ;
-PRE(ZNODE) ; EXTRINSIC WHICH RETURNS THE PREFIX FOR A NODE
- ;
- N GI,GI2,GPT,GJ,GN
- S GI=$$PARENT(ZNODE) ; PARENT NODE
- I GI=0 Q "" ; NO PARENT
- S GPT=$$TAG(GI) ; TAG OF PARENT
- S GI2=$$PARENT(GI) ; PARENT OF PARENT
- I (GI2'=0)&($$TAG(GI2)'="results") S GPT=$$TAG(GI2)_"."_GPT
- S GJ=$$FIRST(GI) ; NODE OF FIRST SIB
- I GJ=ZNODE Q:$$TAG(GI)_",1"
- F GN=2:1 Q:GJ=ZNODE D ;
- . S GJ=$$NXTSIB(GJ) ; NEXT SIBLING
- Q GPT_","_GN
- ;
-MNARY(ZRTN,ZHANDLE,ZOID) ; MAKE A NHIN ARRAY FROM A DOM NODE
- ; RETURNED IN ZRTN, PASSED BY REFERENCE
- ; ZHANDLE IS THE DOM DOCUMENT ID
- ; ZOID IS THE DOM NODE
- D ATT("ZRTN",ZOID)
- Q
- ;
+C0SNHIN ; GPL - Smart Container - OUTPUT OF NHINV ROUTINES;6/3/11 17:05
+ ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
+ ;Copyright 2011-2012 George Lilly. Licensed under the terms of the GNU
+ ;General Public License See attached copy of the License.
+ ;
+ ;This program is free software; you can redistribute it and/or modify
+ ;it under the terms of the GNU General Public License as published by
+ ;the Free Software Foundation; either version 2 of the License, or
+ ;(at your option) any later version.
+ ;
+ ;This program is distributed in the hope that it will be useful,
+ ;but WITHOUT ANY WARRANTY; without even the implied warranty of
+ ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ ;GNU General Public License for more details.
+ ;
+ ;You should have received a copy of the GNU General Public License along
+ ;with this program; if not, write to the Free Software Foundation, Inc.,
+ ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+ ;
+ Q
+EN(ZRTN,ZDFN,ZPART,KEEP) ; GENERATE AN NHIN ARRAY FOR A PATIENT
+ ;
+ K GARY,GNARY,GIDX,C0SDOCID
+ K ZRTN
+ N GN
+ K ^TMP("NHINV",$J) ; CLEAN UP FROM LAST CALL
+ K ^TMP("MXMLDOM",$J) ; CLEAN UP DOM
+ K ^TMP("MXMLERR",$J) ; CLEAN UP MXML ERRORS
+ D GET^C0SNHINV(.GN,ZDFN,ZPART) ; CALL NHINV ROUTINES TO PULL XML
+ S GN=$P(GN,")",1)_")" ; CUT OFF THE REST OF LINE PROTOCOL
+ S C0SDOCID=$$PARSE(GN,"NHINARRAY") ; PARSE WITH MXML
+ D DOMO^C0SDOM(C0SDOCID,"/","ZRTN","GIDX","GARY",,"/results/") ; BLD ARRAYS
+ I '$G(KEEP) K GIDX,GARY ; GET RID OF THE ARRAYS UNLESS KEEP=1
+ ;D PROCESS("ZRTN",GN,"/result/",$G(KEEP))
+ Q
+ ;
+PQRI(ZOUT,KEEP) ; RETURN THE NHIN ARRAY FOR THE PQRI XML TEMPLATE
+ ;
+ N ZG
+ S ZG=$NA(^TMP("PQRIXML",$J))
+ K @ZG
+ D GETXML^C0SMXP(ZG,"PQRIXML") ; GET THE XML FROM C0S MISC XML
+ N C0SDOCID
+ S C0SDOCID=$$PARSE^C0SDOM(ZG,"PQRIXML") ; PARSE THE XML
+ D DOMO^C0SDOM(C0SDOCID,"/","ZOUT","GIDX","GARY",,"//submission") ; BLD ARRAYS
+ I '$G(KEEP) K GIDX,GARY ; GET RID OF THE ARRAYS UNLESS KEEP=1
+ Q
+ ;
+PQRI2(ZRTN) ; RETURN THE NHIN ARRAY FOR PQRI ONE MEASURE
+ ;
+ ;N GG
+ D GETXML^C0SMXP("GG","PQRI ONE MEASURE")
+ D PROCESS(ZRTN,"GG","root",1)
+ Q
+ ;
+PROCESS(ZRSLT,ZXML,ZREDUCE,KEEP) ; PARSE AND RUN DOMO ON XML
+ ; ZRTN IS PASSED BY REFERENCE
+ ; ZXML IS PASSED BY NAME
+ ; IF KEEP IS 1, GARY AND GIDX ARE NOT KILLED
+ ;
+ N GN
+ S GN=$NA(^TMP("C0SPROCESS",$J))
+ K @GN
+ M @GN=@ZXML
+ S C0SDOCID=$$PARSE(GN,"NHINARRAY") ; PARSE WITH MXML
+ K @GN
+ D DOMO^C0SDOM(C0SDOCID,"/","ZRSLT","GIDX","GARY",,$G(ZREDUCE)) ; BLD ARRAYS
+ I '$G(KEEP) K GIDX,GARY ; GET RID OF THE ARRAYS UNLESS KEEP=1
+ Q
+ ;
+LOADSMRT ;
+ ;
+ K ^GPL("SMART")
+ S GN=$NA(^GPL("SMART",1))
+ I $$FTG^%ZISH("/home/george/","alex-lewis2.xml",GN,2) W !,"SMART FILE LOADED"
+ Q
+ ;
+SMART ; TRY IT WITH SMART
+ ;
+ S GN=$NA(^GPL("SMART"))
+ ;K ^TMP("MXMLDOM",$J)
+ K ^TMP("MXMLERR",$J)
+ S C0SDOCID=$$PARSE(GN,"SMART")
+ D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"//rdf:RDF/")
+ ;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
+ Q
+ ;
+CCR ; TRY IT WITH A CCR
+ ;
+ S GN=$NA(^GPL("CCR"))
+ ;K ^TMP("MXMLDOM",$J)
+ K ^TMP("MXMLERR",$J)
+ S C0SDOCID=$$PARSE(GN,"CCR")
+ D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"//ContinuityOfCareRecord/Body/")
+ ;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
+ Q
+ ;
+MED ; TRY IT WITH A CCR MED SECTION
+ ;
+ S GN=$NA(^GPL("MED"))
+ K ^TMP("MXMLDOM",$J)
+ K ^TMP("MXMLERR",$J)
+ S C0SDOCID=$$PARSE(GN,"MED")
+ D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"//Medications/")
+ ;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
+ Q
+ ;
+CCD ; TRY IT WITH A CCD
+ ;
+ S GN=$NA(^GPL("CCD"))
+ ;K ^TMP("MXMLDOM",$J)
+ K ^TMP("MXMLERR",$J)
+ S C0SDOCID=$$PARSE(GN,"CCD")
+ D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"//ClinicalDocument/component/structuredBody/")
+ ;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
+ Q
+ ;
+TEST1 ; TEST NHINV OUTPUT IN ^GPL("NIHIN")
+ ; PARSED WITH MXML
+ ; RUN THROUGH XPATH
+ K GARY,GIDX,C0SDOCID
+ S GN=$NA(^GPL("NHIN"))
+ ;S GN=$NA(^GPL("DOMI"))
+ S C0SDOCID=$$PARSE(GN,"GPLTEST")
+ D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"/results/")
+ K ^GPL("GNARY")
+ M ^GPL("GNARY")=GNARY
+ Q
+ ;
+TEST2 ; PUT GNARY THROUGH DOMI AND STORE XML IN ^GPL("DOMI")
+ ;
+ S GN=$NA(^GPL("GNARY"))
+ S C0SDOCID=$$DOMI^C0SDOM(GN,,"results")
+ D OUTXML^C0SDOM("G",C0SDOCID)
+ K ^GPL("DOMI")
+ M ^GPL("DOMI")=G
+ Q
+ ;
+TEST3 ; TEST NHINV OUTPUT IN ^GPL("NIHIN")
+ ; PARSED WITH MXML
+ ; RUN THROUGH XPATH
+ K GARY,GIDX,C0SDOCID
+ ;S GN=$NA(^GPL("NHIN"))
+ S GN=$NA(^GPL("DOMI"))
+ S C0SDOCID=$$PARSE(GN,"GPLTEST")
+ D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"/results/")
+ Q
+ ;
+DOMO(ZOID,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; RECURSIVE ROUTINE TO POPULATE
+ ; THE XPATH INDEX ZXIDX, PASSED BY NAME
+ ; THE XPATH ARRAY XPARY, PASSED BY NAME
+ ; ZOID IS THE STARTING OID
+ ; ZPATH IS THE STARTING XPATH, USUALLY "/"
+ ; ZNUM IS THE MULTIPLE NUMBER [x], USUALLY NULL WHEN ON THE TOP NODE
+ ; ZREDUX IS THE XPATH REDUCTION STRING, TAKEN OUT OF EACH XPATH IF PRESENT
+ I $G(ZREDUX)="" S ZREDUX=""
+ N NEWPATH,NARY ; NEWPATH IS AN XPATH NARY IS AN NHIN MUMPS ARRAY
+ N NEWNUM S NEWNUM=""
+ I $G(ZNUM)>0 S NEWNUM="["_ZNUM_"]"
+ S NEWPATH=ZPATH_"/"_$$TAG(ZOID)_NEWNUM ; CREATE THE XPATH FOR THIS NODE
+ I $G(ZREDUX)'="" D ; REDUX PROVIDED?
+ . N GT S GT=$P(NEWPATH,ZREDUX,2)
+ . I GT'="" S NEWPATH=GT
+ S @ZXIDX@(NEWPATH)=ZOID ; ADD THE XPATH FOR THIS NODE TO THE XPATH INDEX
+ N GA D ATT("GA",ZOID) ; GET ATTRIBUTES FOR THIS NODE
+ I $D(GA) D ; PROCESS THE ATTRIBUTES
+ . N ZI S ZI=""
+ . F S ZI=$O(GA(ZI)) Q:ZI="" D ; FOR EACH ATTRIBUTE
+ . . N ZP S ZP=NEWPATH_"/"_ZI ; PATH FOR ATTRIBUTE
+ . . S @ZXPARY@(ZP)=GA(ZI) ; ADD THE ATTRIBUTE XPATH TO THE XP ARRAY
+ . . I GA(ZI)'="" D ADDNARY(ZP,GA(ZI)) ; ADD THE NHIN ARRAY VALUE
+ N GD D DATA("GD",ZOID) ; SEE IF THERE IS DATA FOR THIS NODE
+ I $D(GD(2)) D ;
+ . M @ZXPARY@(NEWPATH)=GD ; IF MULITPLE DATA MERGE TO THE ARRAY
+ E I $D(GD(1)) D ;
+ . S @ZXPARY@(NEWPATH)=GD(1) ; IF SINGLE VALUE, ADD TO ARRAY
+ . I GD(1)'="" D ADDNARY(NEWPATH,GD(1)) ; ADD TO NHIN ARRAY
+ N ZFRST S ZFRST=$$FIRST(ZOID) ; SET FIRST CHILD
+ I ZFRST'=0 D ; THERE IS A CHILD
+ . N ZNUM
+ . N ZMULT S ZMULT=$$ISMULT(ZFRST) ; IS FIRST CHILD A MULTIPLE
+ . D DOMO(ZFRST,NEWPATH,ZNARY,ZXIDX,ZXPARY,$S(ZMULT:1,1:""),ZREDUX) ; THE CHILD
+ N GNXT S GNXT=$$NXTSIB(ZOID)
+ I $$TAG(GNXT)'=$$TAG(ZOID) S ZNUM="" ; RESET COUNTING AFTER MULTIPLES
+ I GNXT'=0 D ;
+ . N ZMULT S ZMULT=$$ISMULT(GNXT) ; IS THE SIBLING A MULTIPLE?
+ . I (ZNUM="")&(ZMULT) D ; SIBLING IS FIRST OF MULTIPLES
+ . . N ZNUM S ZNUM=1 ;
+ . . D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; DO NEXT SIB
+ . E D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,$S(ZNUM>0:ZNUM+1,1:""),ZREDUX) ; SIB
+ Q
+ ;
+ADDNARY(ZXP,ZVALUE) ; ADD AN NHIN ARRAY VALUE TO ZNARY
+ ;
+ N ZZI,ZZJ,ZZN
+ S ZZI=$P(ZXP,"/",1) ; FIRST PIECE OF XPATH ARRAY
+ I ZZI="" Q ; DON'T ADD THIS ONE .. PROBABLY THE //results NODE
+ S ZZJ=$P(ZXP,ZZI_"/",2) ; REST OF XPATH ARRAY
+ S ZZJ=$TR(ZZJ,"/",".") ; REPLACE / WITH .
+ I ZZI'["]" D ; A SINGLETON
+ . S ZZN=1
+ E D ; THERE IS AN [x] OCCURANCE
+ . S ZZN=$P($P(ZZI,"[",2),"]",1) ; PULL OUT THE OCCURANCE
+ . S ZZI=$P(ZZI,"[",1) ; TAKE OUT THE [X]
+ I ZZJ'="" S @ZNARY@(ZZI,ZZN,ZZJ)=ZVALUE
+ Q
+ ;
+PARSE(INXML,INDOC) ;CALL THE MXML PARSER ON INXML, PASSED BY NAME
+ ; INDOC IS PASSED AS THE DOCUMENT NAME - DON'T KNOW WHERE TO STORE THIS NOW
+ ; EXTRINSIC WHICH RETURNS THE DOCID ASSIGNED BY MXML
+ ;Q $$EN^MXMLDOM(INXML)
+ Q $$EN^MXMLDOM(INXML,"W")
+ ;
+ISMULT(ZOID) ; RETURN TRUE IF ZOID IS ONE OF A MULTIPLE
+ N ZN
+ ;I $$TAG(ZOID)["entry" B
+ S ZN=$$NXTSIB(ZOID)
+ I ZN'="" Q $$TAG(ZOID)=$$TAG(ZN) ; IF TAG IS THE SAME AS NEXT SIB TAG
+ Q 0
+ ;
+FIRST(ZOID) ;RETURNS THE OID OF THE FIRST CHILD OF ZOID
+ Q $$CHILD^MXMLDOM(C0SDOCID,ZOID)
+ ;
+PARENT(ZOID) ;RETURNS THE OID OF THE PARENT OF ZOID
+ Q $$PARENT^MXMLDOM(C0SDOCID,ZOID)
+ ;
+ATT(RTN,NODE) ;GET ATTRIBUTES FOR ZOID
+ S HANDLE=C0SDOCID
+ K @RTN
+ D GETTXT^MXMLDOM("A")
+ Q
+ ;
+TAG(ZOID) ; RETURNS THE XML TAG FOR THE NODE
+ ;I ZOID=149 B ;GPLTEST
+ N X,Y
+ S Y=""
+ S X=$G(C0SCBK("TAG")) ;IS THERE A CALLBACK FOR THIS ROUTINE
+ I X'="" X X ; EXECUTE THE CALLBACK, SHOULD SET Y
+ I Y="" S Y=$$NAME^MXMLDOM(C0SDOCID,ZOID)
+ Q Y
+ ;
+NXTSIB(ZOID) ; RETURNS THE NEXT SIBLING
+ Q $$SIBLING^MXMLDOM(C0SDOCID,ZOID)
+ ;
+DATA(ZT,ZOID) ; RETURNS DATA FOR THE NODE
+ ;N ZT,ZN S ZT=""
+ ;S C0SDOM=$NA(^TMP("MXMLDOM",$J,C0SDOCID))
+ ;Q $G(@C0SDOM@(ZOID,"T",1))
+ S ZN=$$TEXT^MXMLDOM(C0SDOCID,ZOID,ZT)
+ Q
+ ;
+OUTXML(ZRTN,INID) ; USES C0SMXMLB (MXMLBLD) TO OUTPUT XML FROM AN MXMLDOM
+ ;
+ S C0SDOCID=INID
+ D START^C0SMXMLB($$TAG(1),,"G")
+ D NDOUT($$FIRST(1))
+ D END^C0SMXMLB ;END THE DOCUMENT
+ M @ZRTN=^TMP("MXMLBLD",$J)
+ K ^TMP("MXMLBLD",$J)
+ Q
+ ;
+NDOUT(ZOID) ;CALLBACK ROUTINE - IT IS RECURSIVE
+ N ZI S ZI=$$FIRST(ZOID)
+ I ZI'=0 D ; THERE IS A CHILD
+ . N ZATT D ATT("ZATT",ZOID) ; THESE ARE THE ATTRIBUTES MOVED TO ZATT
+ . D MULTI^C0SMXMLB("",$$TAG(ZOID),.ZATT,"NDOUT^C0SMXML(ZI)") ;HAVE CHILDREN
+ E D ; NO CHILD - IF NO CHILDREN, A NODE HAS DATA, IS AN ENDPOINT
+ . ;W "DOING",ZOID,!
+ . N ZD D DATA("ZD",ZOID) ;NODES WITHOUT CHILDREN HAVE DATA
+ . N ZATT D ATT("ZATT",ZOID) ;ATTRIBUTES
+ . D ITEM^C0SMXMLB("",$$TAG(ZOID),.ZATT,$G(ZD(1))) ;NO CHILDREN
+ I $$NXTSIB(ZOID)'=0 D ; THERE IS A SIBLING
+ . D NDOUT($$NXTSIB(ZOID)) ;RECURSE FOR SIBLINGS
+ Q
+ ;
+WNHIN(ZDFN) ; WRITES THE XML OUTPUT OF GET^NHINV TO AN XML FILE
+ ;
+ N GN,GN2
+ D GET^NHINV(.GN,ZDFN) ; EXTRACT THE XML
+ S GN2=$NA(@GN@(1))
+ W $$OUTPUT^C0SXPATH(GN2,"nhin_"_ZDFN_".xml","/home/wvehr3-09/")
+ Q
+ ;
+TESTNARY ; TEST MAKING A NHIN ARRAY
+ N ZI S ZI=""
+ N ZH ; DOM HANDLE
+ D TEST1 ; PARSE AN NHIN RESULT INTO THE DOM
+ S ZH=C0SDOCID ; SET THE HANDLE
+ N ZD S ZD=$NA(^TMP("MXMLDOM",$J,ZH))
+ F S ZI=$O(@ZD@(ZI)) Q:ZI="" D ; FOR EACH NODE
+ . N ZATT
+ . D MNARY(.ZATT,ZH,ZI)
+ . N ZPRE,ZN
+ . S ZPRE=$$PRE(ZI)
+ . S ZN=$P(ZPRE,",",2)
+ . S ZPRE=$P(ZPRE,",",1)
+ . ;I $D(ZATT) ZWR ZATT
+ . N ZJ S ZJ=""
+ . F S ZJ=$O(ZATT(ZJ)) Q:ZJ="" D ; FOR EACH ATTRIBUTE
+ . . W ZPRE_"["_ZN_"]"_$$TAG(ZI)_"."_ZJ_"="_ZATT(ZJ),!
+ . . S GOUT(ZPRE,ZN,$$TAG(ZI)_"."_ZJ)=ZATT(ZJ)
+ Q
+ ;
+PRE(ZNODE) ; EXTRINSIC WHICH RETURNS THE PREFIX FOR A NODE
+ ;
+ N GI,GI2,GPT,GJ,GN
+ S GI=$$PARENT(ZNODE) ; PARENT NODE
+ I GI=0 Q "" ; NO PARENT
+ S GPT=$$TAG(GI) ; TAG OF PARENT
+ S GI2=$$PARENT(GI) ; PARENT OF PARENT
+ I (GI2'=0)&($$TAG(GI2)'="results") S GPT=$$TAG(GI2)_"."_GPT
+ S GJ=$$FIRST(GI) ; NODE OF FIRST SIB
+ I GJ=ZNODE Q:$$TAG(GI)_",1"
+ F GN=2:1 Q:GJ=ZNODE D ;
+ . S GJ=$$NXTSIB(GJ) ; NEXT SIBLING
+ Q GPT_","_GN
+ ;
+MNARY(ZRTN,ZHANDLE,ZOID) ; MAKE A NHIN ARRAY FROM A DOM NODE
+ ; RETURNED IN ZRTN, PASSED BY REFERENCE
+ ; ZHANDLE IS THE DOM DOCUMENT ID
+ ; ZOID IS THE DOM NODE
+ D ATT("ZRTN",ZOID)
+ Q
+ ;
diff --git a/p/C0SNHINV.m b/p/C0SNHINV.m
index dfa52d5..c3acfde 100644
--- a/p/C0SNHINV.m
+++ b/p/C0SNHINV.m
@@ -1,118 +1,118 @@
-C0SNHINV ;SLC/MKB - Serve VistA data as XML via RPC - Smart Container Version
- ;;1.0;C0S;**1**;Oct 25, 2010;Build 11
- ;
- ; External References DBIA#
- ; ------------------- -----
- ; ^DPT 10035
- ; ^SC 10040
- ; DIQ 2056
- ; MPIF001 2701
- ; VASITE 10112
- ; XLFDT 10103
- ; XLFSTR 10104
- ; XUAF4 2171
- ;
-GET(NHIN,DFN,TYPE,START,STOP,MAX,ID) ; -- Return search results as XML in @NHIN@(n)
- ; RPC = NHIN GET VISTA DATA
- N ICN,NHINI,NHINTOTL
- S NHIN=$NA(^TMP("NHINV",$J)) K @NHIN
- ;
- ; parse & validate input parameters
- S ICN=+$P(DFN,";",2),DFN=+$G(DFN)
- I 'DFN S DFN=+$$GETDFN^MPIF001(ICN)
- I DFN<1!'$D(^DPT(DFN)) D ERR(1,DFN) G GTQ
- S TYPE=$G(TYPE) I TYPE="" S TYPE=$$ALL
- S:'$G(START) START=1410101 S:'$G(STOP) STOP=9999998 S:'$G(MAX) MAX=9999
- I START,STOP,STOP")
- F NHINP=1:1:$L(NHINTYPE,";") S TYPE=$P(NHINTYPE,";",NHINP) I $L(TYPE) D
- . S RTN="EN^"_$$RTN(TYPE) Q:'$L($T(@RTN)) ;D ERR(2) Q
- . D @(RTN_"(DFN,START,STOP,MAX,ID)")
- D ADD("")
- ;
- I $G(NHINTOTL),$G(@NHIN@(1))="" S @NHIN@(1)=""
- ;
-GTQ ; end
- Q
- ;
-RTN(X) ; -- Return name of NHINVxxx routine for clinical domain X
- S X=$$UP^XLFSTR(X),Y="NHINV"
- I X="ACCESSION" S Y="NHINVLRA"
- I X="ALLERGY" S Y="NHINVART"
- I X="APPOINTMENT" S Y="NHINVAPT"
- ; X="CONSULT" S Y="NHINVCON"
- I X="DOCUMENT" S Y="NHINVTIU"
- I X="IMMUNIZATION" S Y="NHINVIMM"
- I X="LAB" S Y="NHINVLR"
- I X="PANEL" S Y="NHINVLRO"
- I X="MED" S Y="NHINVPS"
- I X="RX" S Y="NHINVPSO"
- ; X="ORDER" S Y="NHINVOR"
- I X="PATIENT" S Y="NHINVPT"
- I X="PROBLEM" S Y="NHINVPL"
- I X="PROCEDURE" S Y="NHINVPRC"
- I X="SURGERY" S Y="NHINVSR"
- I X="VISIT" S Y="NHINVSIT"
- I X="VITAL" S Y="NHINVIT"
- I X="RADIOLOGY" S Y="NHINVRA"
- I X="NEW" S Y="NHINVPR"
- Q Y
- ;
-ALL() ; -- return string for all types of data
- ;Q "patient;allergy;problem;vital;lab;med;immunization;visit;appointment;document;procedure"
- Q "patient;allergy;problem;vital;lab;med;immunization;visit;appointment;procedure"
- ;
-ERR(X,VAL) ; -- return error message
- N MSG S MSG="Error"
- I X=1 S MSG="Patient with dfn '"_$G(VAL)_"' not found"
- I X=2 S MSG="Requested domain type '"_$G(VAL)_"' not recognized"
- I X=99 S MSG="Unknown request"
- ;
- D ADD("")
- D ADD(""_MSG_"")
- D ADD("")
- Q
- ;
-ESC(X) ; -- escape outgoing XML
- ; Q $ZCONVERT(X,"O","HTML") ; uncomment for fastest performance on Cache
- ;
- N I,Y,QOT S QOT=""""
- S Y=$P(X,"&") F I=2:1:$L(X,"&") S Y=Y_"&"_$P(X,"&",I)
- S X=Y,Y=$P(X,"<") F I=2:1:$L(X,"<") S Y=Y_"<"_$P(X,"<",I)
- S X=Y,Y=$P(X,">") F I=2:1:$L(X,">") S Y=Y_">"_$P(X,">",I)
- S X=Y,Y=$P(X,"'") F I=2:1:$L(X,"'") S Y=Y_"'"_$P(X,"'",I)
- S X=Y,Y=$P(X,QOT) F I=2:1:$L(X,QOT) S Y=Y_"""_$P(X,QOT,I)
- Q Y
- ;
-ADD(X) ; Add a line @NHIN@(n)=X
- S NHINI=$G(NHINI)+1
- S @NHIN@(NHINI)=X
- Q
- ;
-STRING(ARRAY) ; -- Return text in ARRAY(n) or ARRAY(n,0) as a string
- N I,X,Y S Y=""
- S I=+$O(ARRAY("")) I I=0 S I=+$O(ARRAY(0))
- S Y=$S($D(ARRAY(I,0)):ARRAY(I,0),1:$G(ARRAY(I)))
- F S I=$O(ARRAY(I)) Q:I<1 D
- . S X=$S($D(ARRAY(I,0)):ARRAY(I,0),1:ARRAY(I))
- . I $E(X)=" " S Y=Y_$C(13,10)_X Q
- . S Y=Y_$S($E(Y,$L(Y))=" ":"",1:" ")_X
- Q Y
- ;
-FAC(X) ; -- return Institution file station# for location X
- N HLOC,FAC,Y0,Y S Y=""
- S HLOC=$G(^SC(+$G(X),0)),FAC=$P(HLOC,U,4) ;Institution ien
- ; Get P:4 via Med Ctr Div, if not directly linked
- I 'FAC,$P(HLOC,U,15) S FAC=$$GET1^DIQ(40.8,+$P(HLOC,U,15)_",",.07,"I")
- S Y0=$S(FAC:$$NS^XUAF4(FAC),1:$P($$SITE^VASITE,U,2,3)) ;name^stn#
- S:$L(Y0) Y=$P(Y0,U,2)_U_$P(Y0,U) ;switch to stn#^name
- I $L(Y),'Y S $P(Y,U)=FAC
- Q Y
- ;
-VUID(IEN,FILE) ; -- Return VUID for item
- Q $$GET1^DIQ(FILE,IEN_",",99.99)
+C0SNHINV ;SLC/MKB - Serve VistA data as XML via RPC - Smart Container Version
+ ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
+ ;
+ ; External References DBIA#
+ ; ------------------- -----
+ ; ^DPT 10035
+ ; ^SC 10040
+ ; DIQ 2056
+ ; MPIF001 2701
+ ; VASITE 10112
+ ; XLFDT 10103
+ ; XLFSTR 10104
+ ; XUAF4 2171
+ ;
+GET(NHIN,DFN,TYPE,START,STOP,MAX,ID) ; -- Return search results as XML in @NHIN@(n)
+ ; RPC = NHIN GET VISTA DATA
+ N ICN,NHINI,NHINTOTL
+ S NHIN=$NA(^TMP("NHINV",$J)) K @NHIN
+ ;
+ ; parse & validate input parameters
+ S ICN=+$P(DFN,";",2),DFN=+$G(DFN)
+ I 'DFN S DFN=+$$GETDFN^MPIF001(ICN)
+ I DFN<1!'$D(^DPT(DFN)) D ERR(1,DFN) G GTQ
+ S TYPE=$G(TYPE) I TYPE="" S TYPE=$$ALL
+ S:'$G(START) START=1410101 S:'$G(STOP) STOP=9999998 S:'$G(MAX) MAX=9999
+ I START,STOP,STOP")
+ F NHINP=1:1:$L(NHINTYPE,";") S TYPE=$P(NHINTYPE,";",NHINP) I $L(TYPE) D
+ . S RTN="EN^"_$$RTN(TYPE) Q:'$L($T(@RTN)) ;D ERR(2) Q
+ . D @(RTN_"(DFN,START,STOP,MAX,ID)")
+ D ADD("")
+ ;
+ I $G(NHINTOTL),$G(@NHIN@(1))="" S @NHIN@(1)=""
+ ;
+GTQ ; end
+ Q
+ ;
+RTN(X) ; -- Return name of NHINVxxx routine for clinical domain X
+ S X=$$UP^XLFSTR(X),Y="NHINV"
+ I X="ACCESSION" S Y="NHINVLRA"
+ I X="ALLERGY" S Y="NHINVART"
+ I X="APPOINTMENT" S Y="NHINVAPT"
+ ; X="CONSULT" S Y="NHINVCON"
+ I X="DOCUMENT" S Y="NHINVTIU"
+ I X="IMMUNIZATION" S Y="NHINVIMM"
+ I X="LAB" S Y="NHINVLR"
+ I X="PANEL" S Y="NHINVLRO"
+ I X="MED" S Y="NHINVPS"
+ I X="RX" S Y="NHINVPSO"
+ ; X="ORDER" S Y="NHINVOR"
+ I X="PATIENT" S Y="NHINVPT"
+ I X="PROBLEM" S Y="NHINVPL"
+ I X="PROCEDURE" S Y="NHINVPRC"
+ I X="SURGERY" S Y="NHINVSR"
+ I X="VISIT" S Y="NHINVSIT"
+ I X="VITAL" S Y="NHINVIT"
+ I X="RADIOLOGY" S Y="NHINVRA"
+ I X="NEW" S Y="NHINVPR"
+ Q Y
+ ;
+ALL() ; -- return string for all types of data
+ ;Q "patient;allergy;problem;vital;lab;med;immunization;visit;appointment;document;procedure"
+ Q "patient;allergy;problem;vital;lab;med;immunization;visit;appointment;procedure"
+ ;
+ERR(X,VAL) ; -- return error message
+ N MSG S MSG="Error"
+ I X=1 S MSG="Patient with dfn '"_$G(VAL)_"' not found"
+ I X=2 S MSG="Requested domain type '"_$G(VAL)_"' not recognized"
+ I X=99 S MSG="Unknown request"
+ ;
+ D ADD("")
+ D ADD(""_MSG_"")
+ D ADD("")
+ Q
+ ;
+ESC(X) ; -- escape outgoing XML
+ ; Q $ZCONVERT(X,"O","HTML") ; uncomment for fastest performance on Cache
+ ;
+ N I,Y,QOT S QOT=""""
+ S Y=$P(X,"&") F I=2:1:$L(X,"&") S Y=Y_"&"_$P(X,"&",I)
+ S X=Y,Y=$P(X,"<") F I=2:1:$L(X,"<") S Y=Y_"<"_$P(X,"<",I)
+ S X=Y,Y=$P(X,">") F I=2:1:$L(X,">") S Y=Y_">"_$P(X,">",I)
+ S X=Y,Y=$P(X,"'") F I=2:1:$L(X,"'") S Y=Y_"'"_$P(X,"'",I)
+ S X=Y,Y=$P(X,QOT) F I=2:1:$L(X,QOT) S Y=Y_"""_$P(X,QOT,I)
+ Q Y
+ ;
+ADD(X) ; Add a line @NHIN@(n)=X
+ S NHINI=$G(NHINI)+1
+ S @NHIN@(NHINI)=X
+ Q
+ ;
+STRING(ARRAY) ; -- Return text in ARRAY(n) or ARRAY(n,0) as a string
+ N I,X,Y S Y=""
+ S I=+$O(ARRAY("")) I I=0 S I=+$O(ARRAY(0))
+ S Y=$S($D(ARRAY(I,0)):ARRAY(I,0),1:$G(ARRAY(I)))
+ F S I=$O(ARRAY(I)) Q:I<1 D
+ . S X=$S($D(ARRAY(I,0)):ARRAY(I,0),1:ARRAY(I))
+ . I $E(X)=" " S Y=Y_$C(13,10)_X Q
+ . S Y=Y_$S($E(Y,$L(Y))=" ":"",1:" ")_X
+ Q Y
+ ;
+FAC(X) ; -- return Institution file station# for location X
+ N HLOC,FAC,Y0,Y S Y=""
+ S HLOC=$G(^SC(+$G(X),0)),FAC=$P(HLOC,U,4) ;Institution ien
+ ; Get P:4 via Med Ctr Div, if not directly linked
+ I 'FAC,$P(HLOC,U,15) S FAC=$$GET1^DIQ(40.8,+$P(HLOC,U,15)_",",.07,"I")
+ S Y0=$S(FAC:$$NS^XUAF4(FAC),1:$P($$SITE^VASITE,U,2,3)) ;name^stn#
+ S:$L(Y0) Y=$P(Y0,U,2)_U_$P(Y0,U) ;switch to stn#^name
+ I $L(Y),'Y S $P(Y,U)=FAC
+ Q Y
+ ;
+VUID(IEN,FILE) ; -- Return VUID for item
+ Q $$GET1^DIQ(FILE,IEN_",",99.99)
diff --git a/p/C0SPROB.m b/p/C0SPROB.m
index 3f85b31..7d815ea 100644
--- a/p/C0SPROB.m
+++ b/p/C0SPROB.m
@@ -1,323 +1,323 @@
-C0SPROB ; GPL - Smart Problem Processing ;5/01/12 17:05
- ;;0.1;C0S;nopatch;noreleasedate;Build 2
- ;Copyright 2012 George Lilly. Licensed under the terms of the GNU
- ;General Public License See attached copy of the License.
- ;
- ;This program is free software; you can redistribute it and/or modify
- ;it under the terms of the GNU General Public License as published by
- ;the Free Software Foundation; either version 2 of the License, or
- ;(at your option) any later version.
- ;
- ;This program is distributed in the hope that it will be useful,
- ;but WITHOUT ANY WARRANTY; without even the implied warranty of
- ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- ;GNU General Public License for more details.
- ;
- ;You should have received a copy of the GNU General Public License along
- ;with this program; if not, write to the Free Software Foundation, Inc.,
- ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
- ;
- Q
- ;
- ; sample VistA NHIN problem list
- ;
- ;^TMP("C0STBL",91,"problem",1,"acuity@value")="C"
- ;^TMP("C0STBL",91,"problem",1,"entered@value")=3110531
- ;^TMP("C0STBL",91,"problem",1,"facility@code")=100
- ;^TMP("C0STBL",91,"problem",1,"facility@name")="VOE OFFICE INSTITUTION"
- ;^TMP("C0STBL",91,"problem",1,"icd@value")=414.9
- ;^TMP("C0STBL",91,"problem",1,"id@value")=100
- ;^TMP("C0STBL",91,"problem",1,"location@value")="DR OFFICE"
- ;^TMP("C0STBL",91,"problem",1,"name@value")="Coronary Artery Disease"
- ;^TMP("C0STBL",91,"problem",1,"onset@value")=3100201
- ;^TMP("C0STBL",91,"problem",1,"provider@code")=63
- ;^TMP("C0STBL",91,"problem",1,"provider@name")="KING,MATTHEW MICHAEL"
- ;^TMP("C0STBL",91,"problem",1,"removed@value")=0
- ;^TMP("C0STBL",91,"problem",1,"sc@value")=0
- ;^TMP("C0STBL",91,"problem",1,"status@value")="A"
- ;^TMP("C0STBL",91,"problem",1,"unverified@value")=0
- ;^TMP("C0STBL",91,"problem",1,"updated@value")=3110531
- ;^TMP("C0STBL",91,"problem",2,"acuity@value")="C"
- ;^TMP("C0STBL",91,"problem",2,"entered@value")=3110602
- ;^TMP("C0STBL",91,"problem",2,"facility@code")=100
- ;^TMP("C0STBL",91,"problem",2,"facility@name")="VOE OFFICE INSTITUTION"
- ;^TMP("C0STBL",91,"problem",2,"icd@value")=780.2
- ;^TMP("C0STBL",91,"problem",2,"id@value")=108
- ;^TMP("C0STBL",91,"problem",2,"name@value")="Syncope and collapse"
- ;^TMP("C0STBL",91,"problem",2,"onset@value")=3110102
- ;^TMP("C0STBL",91,"problem",2,"provider@code")=63
- ;^TMP("C0STBL",91,"problem",2,"provider@name")="KING,MATTHEW MICHAEL"
- ;^TMP("C0STBL",91,"problem",2,"removed@value")=0
- ;^TMP("C0STBL",91,"problem",2,"sc@value")=0
- ;^TMP("C0STBL",91,"problem",2,"status@value")="A"
- ;^TMP("C0STBL",91,"problem",2,"unverified@value")=0
- ;^TMP("C0STBL",91,"problem",2,"updated@value")=3110602
- ;^TMP("C0STBL",91,"problem",3,"acuity@value")="C"
- ;^TMP("C0STBL",91,"problem",3,"entered@value")=3110602
- ;^TMP("C0STBL",91,"problem",3,"facility@code")=100
- ;^TMP("C0STBL",91,"problem",3,"facility@name")="VOE OFFICE INSTITUTION"
- ;^TMP("C0STBL",91,"problem",3,"icd@value")=433.91
- ;^TMP("C0STBL",91,"problem",3,"id@value")=109
- ;^TMP("C0STBL",91,"problem",3,"name@value")="Occlusion and Stenosis of Unspecifid Precerebral Artery with Cerebral Infarctio"
- ;^TMP("C0STBL",91,"problem",3,"onset@value")=3100101
- ;^TMP("C0STBL",91,"problem",3,"provider@code")=63
- ;^TMP("C0STBL",91,"problem",3,"provider@name")="KING,MATTHEW MICHAEL"
- ;^TMP("C0STBL",91,"problem",3,"removed@value")=0
- ;^TMP("C0STBL",91,"problem",3,"sc@value")=0
- ;^TMP("C0STBL",91,"problem",3,"status@value")="A"
- ;^TMP("C0STBL",91,"problem",3,"unverified@value")=0
- ;^TMP("C0STBL",91,"problem",3,"updated@value")=3110602
- ;^TMP("C0STBL",91,"problem",4,"entered@value")=3110603
- ;^TMP("C0STBL",91,"problem",4,"facility@code")=100
- ;^TMP("C0STBL",91,"problem",4,"facility@name")="VOE OFFICE INSTITUTION"
- ;^TMP("C0STBL",91,"problem",4,"icd@value")="00.66"
- ;^TMP("C0STBL",91,"problem",4,"id@value")=115
- ;^TMP("C0STBL",91,"problem",4,"location@value")="DR OFFICE"
- ;^TMP("C0STBL",91,"problem",4,"name@value")="00.66"
- ;^TMP("C0STBL",91,"problem",4,"provider@code")=63
- ;^TMP("C0STBL",91,"problem",4,"provider@name")="KING,MATTHEW MICHAEL"
- ;^TMP("C0STBL",91,"problem",4,"removed@value")=0
- ;^TMP("C0STBL",91,"problem",4,"status@value")="A"
- ;^TMP("C0STBL",91,"problem",4,"unverified@value")=0
- ;^TMP("C0STBL",91,"problem",4,"updated@value")=3110603
- ;^TMP("C0STBL",91,"problem",5,"entered@value")=3110603
- ;^TMP("C0STBL",91,"problem",5,"facility@code")=100
- ;^TMP("C0STBL",91,"problem",5,"facility@name")="VOE OFFICE INSTITUTION"
- ;^TMP("C0STBL",91,"problem",5,"icd@value")=37.21
- ;^TMP("C0STBL",91,"problem",5,"id@value")=116
- ;^TMP("C0STBL",91,"problem",5,"location@value")="DR OFFICE"
- ;^TMP("C0STBL",91,"problem",5,"name@value")=37.21
- ;^TMP("C0STBL",91,"problem",5,"provider@code")=63
- ;^TMP("C0STBL",91,"problem",5,"provider@name")="KING,MATTHEW MICHAEL"
- ;^TMP("C0STBL",91,"problem",5,"removed@value")=0
- ;^TMP("C0STBL",91,"problem",5,"status@value")="A"
- ;^TMP("C0STBL",91,"problem",5,"unverified@value")=0
- ;^TMP("C0STBL",91,"problem",5,"updated@value")=3110603
- ;^TMP("C0STBL",91,"problem",6,"entered@value")=3110603
- ;^TMP("C0STBL",91,"problem",6,"facility@code")=100
- ;^TMP("C0STBL",91,"problem",6,"facility@name")="VOE OFFICE INSTITUTION"
- ;^TMP("C0STBL",91,"problem",6,"icd@value")=81.51
- ;^TMP("C0STBL",91,"problem",6,"id@value")=117
- ;^TMP("C0STBL",91,"problem",6,"location@value")="DR OFFICE"
- ;^TMP("C0STBL",91,"problem",6,"name@value")=81.51
- ;^TMP("C0STBL",91,"problem",6,"provider@code")=63
- ;^TMP("C0STBL",91,"problem",6,"provider@name")="KING,MATTHEW MICHAEL"
- ;^TMP("C0STBL",91,"problem",6,"removed@value")=0
- ;^TMP("C0STBL",91,"problem",6,"status@value")="A"
- ;^TMP("C0STBL",91,"problem",6,"unverified@value")=0
- ;^TMP("C0STBL",91,"problem",6,"updated@value")=3110603
- ;^TMP("C0STBL",91,"problem",7,"entered@value")=3110603
- ;^TMP("C0STBL",91,"problem",7,"facility@code")=100
- ;^TMP("C0STBL",91,"problem",7,"facility@name")="VOE OFFICE INSTITUTION"
- ;^TMP("C0STBL",91,"problem",7,"icd@value")=47.09
- ;^TMP("C0STBL",91,"problem",7,"id@value")=118
- ;^TMP("C0STBL",91,"problem",7,"location@value")="DR OFFICE"
- ;^TMP("C0STBL",91,"problem",7,"name@value")=47.09
- ;^TMP("C0STBL",91,"problem",7,"provider@code")=63
- ;^TMP("C0STBL",91,"problem",7,"provider@name")="KING,MATTHEW MICHAEL"
- ;^TMP("C0STBL",91,"problem",7,"removed@value")=0
- ;^TMP("C0STBL",91,"problem",7,"status@value")="A"
- ;^TMP("C0STBL",91,"problem",7,"unverified@value")=0
- ;^TMP("C0STBL",91,"problem",7,"updated@value")=3110603
- ;^TMP("C0STBL",91,"problem",8,"entered@value")=3110603
- ;^TMP("C0STBL",91,"problem",8,"facility@code")=100
- ;^TMP("C0STBL",91,"problem",8,"facility@name")="VOE OFFICE INSTITUTION"
- ;^TMP("C0STBL",91,"problem",8,"icd@value")="250.00"
- ;^TMP("C0STBL",91,"problem",8,"id@value")=119
- ;^TMP("C0STBL",91,"problem",8,"location@value")="DR OFFICE"
- ;^TMP("C0STBL",91,"problem",8,"name@value")="Diabetes Mellitus without mentionof Complication, type II or unspecified type,"
- ;^TMP("C0STBL",91,"problem",8,"provider@code")=63
- ;^TMP("C0STBL",91,"problem",8,"provider@name")="KING,MATTHEW MICHAEL"
- ;^TMP("C0STBL",91,"problem",8,"removed@value")=0
- ;^TMP("C0STBL",91,"problem",8,"status@value")="A"
- ;^TMP("C0STBL",91,"problem",8,"unverified@value")=0
- ;^TMP("C0STBL",91,"problem",8,"updated@value")=3110603
- ;
- ; sample Smart lab result triples
- ;
- ;G("node16rk1fgdvx10882","code")="snomed:40930008"
- ;G("node16rk1fgdvx10882","dcterms:title")="Hypothyroidism"
- ;G("node16rk1fgdvx10882","rdf:type")="sp:CodedValue"
- ;G("node16rk1fgdvx11051","code")="snomed:188155002"
- ;G("node16rk1fgdvx11051","dcterms:title")="Primary malignant neoplasm of lower outer quadrant of female breast"
- ;G("node16rk1fgdvx11051","rdf:type")="sp:CodedValue"
- ;G("node16rk1fgdvx11073","code")="snomed:353295004"
- ;G("node16rk1fgdvx11073","dcterms:title")="Toxic diffuse goiter"
- ;G("node16rk1fgdvx11073","rdf:type")="sp:CodedValue"
- ;G("node16rk1fgdvx11089","code")="snomed:54302000"
- ;G("node16rk1fgdvx11089","dcterms:title")="Disorder of breast"
- ;G("node16rk1fgdvx11089","rdf:type")="sp:CodedValue"
- ;G("node16rk1fgdvx11351","code")="snomed:38341003"
- ;G("node16rk1fgdvx11351","dcterms:title")="Essential hypertension"
- ;G("node16rk1fgdvx11351","rdf:type")="sp:CodedValue"
- ;G("node16rk1fgdvx11390","code")="snomed:44054006"
- ;G("node16rk1fgdvx11390","dcterms:title")="Diabetes mellitus type 2"
- ;G("node16rk1fgdvx11390","rdf:type")="sp:CodedValue"
- ;G("node16rk1fgdvx11558","code")="snomed:195967001"
- ;G("node16rk1fgdvx11558","dcterms:title")="Asthma"
- ;G("node16rk1fgdvx11558","rdf:type")="sp:CodedValue"
- ;G("node16rk1fgdvx11578","code")="snomed:254837009"
- ;G("node16rk1fgdvx11578","dcterms:title")="Primary malignant neoplasm of female breast"
- ;G("node16rk1fgdvx11578","rdf:type")="sp:CodedValue"
- ;G("node16rk1fgdvx11687","code")="snomed:8517006"
- ;G("node16rk1fgdvx11687","dcterms:title")="History of tobacco use"
- ;G("node16rk1fgdvx11687","rdf:type")="sp:CodedValue"
- ;G("node16rk1fgdvx11716","code")="snomed:55822004"
- ;G("node16rk1fgdvx11716","dcterms:title")="Hyperlipidemia"
- ;G("node16rk1fgdvx11716","rdf:type")="sp:CodedValue"
- ;G("smart:1577780/problems/69560e4721e1","belongsTo")="smart:1577780"
- ;G("smart:1577780/problems/69560e4721e1","problemName")="node16rk1fgdvx11089"
- ;G("smart:1577780/problems/69560e4721e1","rdf:type")="sp:Problem"
- ;G("smart:1577780/problems/69560e4721e1","startDate")="2005-08-02"
- ;G("smart:1577780/problems/06ef10c4e92c","belongsTo")="smart:1577780"
- ;G("smart:1577780/problems/06ef10c4e92c","problemName")="node16rk1fgdvx11051"
- ;G("smart:1577780/problems/06ef10c4e92c","rdf:type")="sp:Problem"
- ;G("smart:1577780/problems/06ef10c4e92c","startDate")="2006-02-20"
- ;G("smart:1577780/problems/9894ba9dfe5a","belongsTo")="smart:1577780"
- ;G("smart:1577780/problems/9894ba9dfe5a","problemName")="node16rk1fgdvx11578"
- ;G("smart:1577780/problems/9894ba9dfe5a","rdf:type")="sp:Problem"
- ;G("smart:1577780/problems/9894ba9dfe5a","startDate")="2005-08-22"
- ;G("smart:1577780/problems/c109aa7a0675","belongsTo")="smart:1577780"
- ;G("smart:1577780/problems/c109aa7a0675","problemName")="node16rk1fgdvx11558"
- ;G("smart:1577780/problems/c109aa7a0675","rdf:type")="sp:Problem"
- ;G("smart:1577780/problems/c109aa7a0675","startDate")="2005-09-22"
- ;G("smart:1577780/problems/1c50100614a2","belongsTo")="smart:1577780"
- ;G("smart:1577780/problems/1c50100614a2","problemName")="node16rk1fgdvx11073"
- ;G("smart:1577780/problems/1c50100614a2","rdf:type")="sp:Problem"
- ;G("smart:1577780/problems/1c50100614a2","startDate")="2007-02-21"
- ;G("smart:1577780/problems/083dffb2c4a0","belongsTo")="smart:1577780"
- ;G("smart:1577780/problems/083dffb2c4a0","problemName")="node16rk1fgdvx11390"
- ;G("smart:1577780/problems/083dffb2c4a0","rdf:type")="sp:Problem"
- ;G("smart:1577780/problems/083dffb2c4a0","startDate")="2007-01-07"
- ;G("smart:1577780/problems/762b5639a2d1","belongsTo")="smart:1577780"
- ;G("smart:1577780/problems/762b5639a2d1","problemName")="node16rk1fgdvx11687"
- ;G("smart:1577780/problems/762b5639a2d1","rdf:type")="sp:Problem"
- ;G("smart:1577780/problems/762b5639a2d1","startDate")="2006-02-20"
- ;G("smart:1577780/problems/9dc9053dd6f4","belongsTo")="smart:1577780"
- ;G("smart:1577780/problems/9dc9053dd6f4","problemName")="node16rk1fgdvx11716"
- ;G("smart:1577780/problems/9dc9053dd6f4","rdf:type")="sp:Problem"
- ;G("smart:1577780/problems/9dc9053dd6f4","startDate")="2008-04-08"
- ;G("smart:1577780/problems/e3fe9b7ee552","belongsTo")="smart:1577780"
- ;G("smart:1577780/problems/e3fe9b7ee552","problemName")="node16rk1fgdvx10882"
- ;G("smart:1577780/problems/e3fe9b7ee552","rdf:type")="sp:Problem"
- ;G("smart:1577780/problems/e3fe9b7ee552","startDate")="2005-10-27"
- ;G("smart:1577780/problems/9933307e8f95","belongsTo")="smart:1577780"
- ;G("smart:1577780/problems/9933307e8f95","problemName")="node16rk1fgdvx11351"
- ;G("smart:1577780/problems/9933307e8f95","rdf:type")="sp:Problem"
- ;G("smart:1577780/problems/9933307e8f95","startDate")="2005-08-22"
- ;G("snomed:188155002","dcterms:identifier")=188155002
- ;G("snomed:188155002","dcterms:title")="Primary malignant neoplasm of lower outer quadrant of female breast"
- ;G("snomed:188155002","rdf:type")="sp:Code"
- ;G("snomed:188155002","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
- ;G("snomed:195967001","dcterms:identifier")=195967001
- ;G("snomed:195967001","dcterms:title")="Asthma"
- ;G("snomed:195967001","rdf:type")="sp:Code"
- ;G("snomed:195967001","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
- ;G("snomed:254837009","dcterms:identifier")=254837009
- ;G("snomed:254837009","dcterms:title")="Primary malignant neoplasm of female breast"
- ;G("snomed:254837009","rdf:type")="sp:Code"
- ;G("snomed:254837009","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
- ;G("snomed:353295004","dcterms:identifier")=353295004
- ;G("snomed:353295004","dcterms:title")="Toxic diffuse goiter"
- ;G("snomed:353295004","rdf:type")="sp:Code"
- ;G("snomed:353295004","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
- ;G("snomed:38341003","dcterms:identifier")=38341003
- ;G("snomed:38341003","dcterms:title")="Essential hypertension"
- ;G("snomed:38341003","rdf:type")="sp:Code"
- ;G("snomed:38341003","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
- ;G("snomed:40930008","dcterms:identifier")=40930008
- ;G("snomed:40930008","dcterms:title")="Hypothyroidism"
- ;G("snomed:40930008","rdf:type")="sp:Code"
- ;G("snomed:40930008","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
- ;G("snomed:44054006","dcterms:identifier")=44054006
- ;G("snomed:44054006","dcterms:title")="Diabetes mellitus type 2"
- ;G("snomed:44054006","rdf:type")="sp:Code"
- ;G("snomed:44054006","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
- ;G("snomed:54302000","dcterms:identifier")=54302000
- ;G("snomed:54302000","dcterms:title")="Disorder of breast"
- ;G("snomed:54302000","rdf:type")="sp:Code"
- ;G("snomed:54302000","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
- ;G("snomed:55822004","dcterms:identifier")=55822004
- ;G("snomed:55822004","dcterms:title")="Hyperlipidemia"
- ;G("snomed:55822004","rdf:type")="sp:Code"
- ;G("snomed:55822004","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
- ;G("snomed:8517006","dcterms:identifier")=8517006
- ;G("snomed:8517006","dcterms:title")="History of tobacco use"
- ;G("snomed:8517006","rdf:type")="sp:Code"
- ;G("snomed:8517006","system")="http://purl.bioontology.org/ontology/SNOMEDCT/"
-
- ;
-PROB(GRTN,C0SARY) ; GRTN, passed by reference,
- ; is the return name of the graph created. "" if none
- ; C0SARY is passed in by reference and is the NHIN array of problems
- ;
- I $O(C0SARY("problem",""))="" D Q ;
- . I $D(DEBUG) W !,"No Problems"
- S GRTN="" ; default to no problems
- N C0SGRF
- S C0SGRF="vistaSmart:"_ZPATID_"/problems"
- I $D(DEBUG) W !,"Processing ",C0SGRF
- D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
- D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
- N FARY S FARY="C0XFARY"
- D USEFARY^C0XF2N(FARY)
- D VOCINIT^C0XUTIL
- ;
- D STARTADD^C0XF2N ; initialize to create triples
- ;
- N ZI S ZI=""
- F S ZI=$O(C0SARY("problem",ZI)) Q:ZI="" D ;
- . N LRN,ZR ; ZR is the local array for building the new triples
- . S LRN=$NA(C0SARY("problem",ZI)) ; base for values in this lab result
- . ;
- . N PROBID ; unique Id for this problem
- . S PROBID=C0SGRF_"/"_$$LKY17^C0XF2N ; use a random number
- . ;
- . ; i don't like this because the same problems gets a
- . ; different ID every time it's reported. Can't trace it back to VistA
- . ; I'd rather be using id@value ie "id@value")="118"
- . ;
- . N SNOMED S SNOMED=$G(@LRN@("icd@value"))
- . N SNOGRF S SNOGRF="snomed:"_SNOMED
- . N SNOTIT S SNOTIT=$G(@LRN@("name@value"))
- . I $D(DEBUG) D ;
- . . W !,"Processing Problem List ",PROBID
- . . W !,"problem: ",SNOTIT
- . . W !,"code: ",SNOMED
- . ;
- . ; first do the base result graph
- . ;
- . S ZR("rdf:type")="sp:Problem"
- . S ZR("sp:belongsTo")=C0SGRF ; the subject for this patient's problems
- . ; ie /vista/smart/99912345/problems
- . ;
- . N PROBNAME S PROBNAME=$$ANONS^C0XF2N ; new node for problem name
- . S ZR("sp:problemName")=PROBNAME
- . ;
- . N STARTDT S STARTDT=$$SPDATE^C0SUTIL($G(@LRN@("entered@value")))
- . S ZR("sp:startDate")=STARTDT
- . ;
- . D ADDINN^C0XF2N(C0SGRF,PROBID,.ZR) ; addIfNotNull the triples
- . K ZR ; clean up
- . ;
- . ; create the problemName graph
- . ;
- . S ZR("rdf:type")="sp:CodedValue"
- . S ZR("sp:code")="snomed:"_SNOMED
- . S ZR("dcterms:title")=$G(@LRN@("name@value"))
- . D ADDINN^C0XF2N(C0SGRF,PROBNAME,.ZR)
- . K ZR
- . ;
- . ; create snomed graph
- . ;
- . S ZR("rdf:type")="sp:Code"
- . S ZR("sp:system")="http://purl.bioontology.org/ontology/SNOMEDCT"
- . S ZR("dcterms:identifier")=SNOMED
- . S ZR("dcterms:title")=SNOTIT
- . D ADDINN^C0XF2N(C0SGRF,SNOGRF,.ZR)
- . K ZR
- . ;
- D BULKLOAD^C0XF2N(.C0XFDA)
- S GRTN=C0SGRF
- Q
- ;
\ No newline at end of file
+C0SPROB ; GPL - Smart Problem Processing ;5/01/12 17:05
+ ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
+ ;Copyright 2012 George Lilly. Licensed under the terms of the GNU
+ ;General Public License See attached copy of the License.
+ ;
+ ;This program is free software; you can redistribute it and/or modify
+ ;it under the terms of the GNU General Public License as published by
+ ;the Free Software Foundation; either version 2 of the License, or
+ ;(at your option) any later version.
+ ;
+ ;This program is distributed in the hope that it will be useful,
+ ;but WITHOUT ANY WARRANTY; without even the implied warranty of
+ ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ ;GNU General Public License for more details.
+ ;
+ ;You should have received a copy of the GNU General Public License along
+ ;with this program; if not, write to the Free Software Foundation, Inc.,
+ ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+ ;
+ Q
+ ;
+ ; sample VistA NHIN problem list
+ ;
+ ;^TMP("C0STBL",91,"problem",1,"acuity@value")="C"
+ ;^TMP("C0STBL",91,"problem",1,"entered@value")=3110531
+ ;^TMP("C0STBL",91,"problem",1,"facility@code")=100
+ ;^TMP("C0STBL",91,"problem",1,"facility@name")="VOE OFFICE INSTITUTION"
+ ;^TMP("C0STBL",91,"problem",1,"icd@value")=414.9
+ ;^TMP("C0STBL",91,"problem",1,"id@value")=100
+ ;^TMP("C0STBL",91,"problem",1,"location@value")="DR OFFICE"
+ ;^TMP("C0STBL",91,"problem",1,"name@value")="Coronary Artery Disease"
+ ;^TMP("C0STBL",91,"problem",1,"onset@value")=3100201
+ ;^TMP("C0STBL",91,"problem",1,"provider@code")=63
+ ;^TMP("C0STBL",91,"problem",1,"provider@name")="KING,MATTHEW MICHAEL"
+ ;^TMP("C0STBL",91,"problem",1,"removed@value")=0
+ ;^TMP("C0STBL",91,"problem",1,"sc@value")=0
+ ;^TMP("C0STBL",91,"problem",1,"status@value")="A"
+ ;^TMP("C0STBL",91,"problem",1,"unverified@value")=0
+ ;^TMP("C0STBL",91,"problem",1,"updated@value")=3110531
+ ;^TMP("C0STBL",91,"problem",2,"acuity@value")="C"
+ ;^TMP("C0STBL",91,"problem",2,"entered@value")=3110602
+ ;^TMP("C0STBL",91,"problem",2,"facility@code")=100
+ ;^TMP("C0STBL",91,"problem",2,"facility@name")="VOE OFFICE INSTITUTION"
+ ;^TMP("C0STBL",91,"problem",2,"icd@value")=780.2
+ ;^TMP("C0STBL",91,"problem",2,"id@value")=108
+ ;^TMP("C0STBL",91,"problem",2,"name@value")="Syncope and collapse"
+ ;^TMP("C0STBL",91,"problem",2,"onset@value")=3110102
+ ;^TMP("C0STBL",91,"problem",2,"provider@code")=63
+ ;^TMP("C0STBL",91,"problem",2,"provider@name")="KING,MATTHEW MICHAEL"
+ ;^TMP("C0STBL",91,"problem",2,"removed@value")=0
+ ;^TMP("C0STBL",91,"problem",2,"sc@value")=0
+ ;^TMP("C0STBL",91,"problem",2,"status@value")="A"
+ ;^TMP("C0STBL",91,"problem",2,"unverified@value")=0
+ ;^TMP("C0STBL",91,"problem",2,"updated@value")=3110602
+ ;^TMP("C0STBL",91,"problem",3,"acuity@value")="C"
+ ;^TMP("C0STBL",91,"problem",3,"entered@value")=3110602
+ ;^TMP("C0STBL",91,"problem",3,"facility@code")=100
+ ;^TMP("C0STBL",91,"problem",3,"facility@name")="VOE OFFICE INSTITUTION"
+ ;^TMP("C0STBL",91,"problem",3,"icd@value")=433.91
+ ;^TMP("C0STBL",91,"problem",3,"id@value")=109
+ ;^TMP("C0STBL",91,"problem",3,"name@value")="Occlusion and Stenosis of Unspecifid Precerebral Artery with Cerebral Infarctio"
+ ;^TMP("C0STBL",91,"problem",3,"onset@value")=3100101
+ ;^TMP("C0STBL",91,"problem",3,"provider@code")=63
+ ;^TMP("C0STBL",91,"problem",3,"provider@name")="KING,MATTHEW MICHAEL"
+ ;^TMP("C0STBL",91,"problem",3,"removed@value")=0
+ ;^TMP("C0STBL",91,"problem",3,"sc@value")=0
+ ;^TMP("C0STBL",91,"problem",3,"status@value")="A"
+ ;^TMP("C0STBL",91,"problem",3,"unverified@value")=0
+ ;^TMP("C0STBL",91,"problem",3,"updated@value")=3110602
+ ;^TMP("C0STBL",91,"problem",4,"entered@value")=3110603
+ ;^TMP("C0STBL",91,"problem",4,"facility@code")=100
+ ;^TMP("C0STBL",91,"problem",4,"facility@name")="VOE OFFICE INSTITUTION"
+ ;^TMP("C0STBL",91,"problem",4,"icd@value")="00.66"
+ ;^TMP("C0STBL",91,"problem",4,"id@value")=115
+ ;^TMP("C0STBL",91,"problem",4,"location@value")="DR OFFICE"
+ ;^TMP("C0STBL",91,"problem",4,"name@value")="00.66"
+ ;^TMP("C0STBL",91,"problem",4,"provider@code")=63
+ ;^TMP("C0STBL",91,"problem",4,"provider@name")="KING,MATTHEW MICHAEL"
+ ;^TMP("C0STBL",91,"problem",4,"removed@value")=0
+ ;^TMP("C0STBL",91,"problem",4,"status@value")="A"
+ ;^TMP("C0STBL",91,"problem",4,"unverified@value")=0
+ ;^TMP("C0STBL",91,"problem",4,"updated@value")=3110603
+ ;^TMP("C0STBL",91,"problem",5,"entered@value")=3110603
+ ;^TMP("C0STBL",91,"problem",5,"facility@code")=100
+ ;^TMP("C0STBL",91,"problem",5,"facility@name")="VOE OFFICE INSTITUTION"
+ ;^TMP("C0STBL",91,"problem",5,"icd@value")=37.21
+ ;^TMP("C0STBL",91,"problem",5,"id@value")=116
+ ;^TMP("C0STBL",91,"problem",5,"location@value")="DR OFFICE"
+ ;^TMP("C0STBL",91,"problem",5,"name@value")=37.21
+ ;^TMP("C0STBL",91,"problem",5,"provider@code")=63
+ ;^TMP("C0STBL",91,"problem",5,"provider@name")="KING,MATTHEW MICHAEL"
+ ;^TMP("C0STBL",91,"problem",5,"removed@value")=0
+ ;^TMP("C0STBL",91,"problem",5,"status@value")="A"
+ ;^TMP("C0STBL",91,"problem",5,"unverified@value")=0
+ ;^TMP("C0STBL",91,"problem",5,"updated@value")=3110603
+ ;^TMP("C0STBL",91,"problem",6,"entered@value")=3110603
+ ;^TMP("C0STBL",91,"problem",6,"facility@code")=100
+ ;^TMP("C0STBL",91,"problem",6,"facility@name")="VOE OFFICE INSTITUTION"
+ ;^TMP("C0STBL",91,"problem",6,"icd@value")=81.51
+ ;^TMP("C0STBL",91,"problem",6,"id@value")=117
+ ;^TMP("C0STBL",91,"problem",6,"location@value")="DR OFFICE"
+ ;^TMP("C0STBL",91,"problem",6,"name@value")=81.51
+ ;^TMP("C0STBL",91,"problem",6,"provider@code")=63
+ ;^TMP("C0STBL",91,"problem",6,"provider@name")="KING,MATTHEW MICHAEL"
+ ;^TMP("C0STBL",91,"problem",6,"removed@value")=0
+ ;^TMP("C0STBL",91,"problem",6,"status@value")="A"
+ ;^TMP("C0STBL",91,"problem",6,"unverified@value")=0
+ ;^TMP("C0STBL",91,"problem",6,"updated@value")=3110603
+ ;^TMP("C0STBL",91,"problem",7,"entered@value")=3110603
+ ;^TMP("C0STBL",91,"problem",7,"facility@code")=100
+ ;^TMP("C0STBL",91,"problem",7,"facility@name")="VOE OFFICE INSTITUTION"
+ ;^TMP("C0STBL",91,"problem",7,"icd@value")=47.09
+ ;^TMP("C0STBL",91,"problem",7,"id@value")=118
+ ;^TMP("C0STBL",91,"problem",7,"location@value")="DR OFFICE"
+ ;^TMP("C0STBL",91,"problem",7,"name@value")=47.09
+ ;^TMP("C0STBL",91,"problem",7,"provider@code")=63
+ ;^TMP("C0STBL",91,"problem",7,"provider@name")="KING,MATTHEW MICHAEL"
+ ;^TMP("C0STBL",91,"problem",7,"removed@value")=0
+ ;^TMP("C0STBL",91,"problem",7,"status@value")="A"
+ ;^TMP("C0STBL",91,"problem",7,"unverified@value")=0
+ ;^TMP("C0STBL",91,"problem",7,"updated@value")=3110603
+ ;^TMP("C0STBL",91,"problem",8,"entered@value")=3110603
+ ;^TMP("C0STBL",91,"problem",8,"facility@code")=100
+ ;^TMP("C0STBL",91,"problem",8,"facility@name")="VOE OFFICE INSTITUTION"
+ ;^TMP("C0STBL",91,"problem",8,"icd@value")="250.00"
+ ;^TMP("C0STBL",91,"problem",8,"id@value")=119
+ ;^TMP("C0STBL",91,"problem",8,"location@value")="DR OFFICE"
+ ;^TMP("C0STBL",91,"problem",8,"name@value")="Diabetes Mellitus without mentionof Complication, type II or unspecified type,"
+ ;^TMP("C0STBL",91,"problem",8,"provider@code")=63
+ ;^TMP("C0STBL",91,"problem",8,"provider@name")="KING,MATTHEW MICHAEL"
+ ;^TMP("C0STBL",91,"problem",8,"removed@value")=0
+ ;^TMP("C0STBL",91,"problem",8,"status@value")="A"
+ ;^TMP("C0STBL",91,"problem",8,"unverified@value")=0
+ ;^TMP("C0STBL",91,"problem",8,"updated@value")=3110603
+ ;
+ ; sample Smart lab result triples
+ ;
+ ;G("node16rk1fgdvx10882","code")="snomed:40930008"
+ ;G("node16rk1fgdvx10882","dcterms:title")="Hypothyroidism"
+ ;G("node16rk1fgdvx10882","rdf:type")="sp:CodedValue"
+ ;G("node16rk1fgdvx11051","code")="snomed:188155002"
+ ;G("node16rk1fgdvx11051","dcterms:title")="Primary malignant neoplasm of lower outer quadrant of female breast"
+ ;G("node16rk1fgdvx11051","rdf:type")="sp:CodedValue"
+ ;G("node16rk1fgdvx11073","code")="snomed:353295004"
+ ;G("node16rk1fgdvx11073","dcterms:title")="Toxic diffuse goiter"
+ ;G("node16rk1fgdvx11073","rdf:type")="sp:CodedValue"
+ ;G("node16rk1fgdvx11089","code")="snomed:54302000"
+ ;G("node16rk1fgdvx11089","dcterms:title")="Disorder of breast"
+ ;G("node16rk1fgdvx11089","rdf:type")="sp:CodedValue"
+ ;G("node16rk1fgdvx11351","code")="snomed:38341003"
+ ;G("node16rk1fgdvx11351","dcterms:title")="Essential hypertension"
+ ;G("node16rk1fgdvx11351","rdf:type")="sp:CodedValue"
+ ;G("node16rk1fgdvx11390","code")="snomed:44054006"
+ ;G("node16rk1fgdvx11390","dcterms:title")="Diabetes mellitus type 2"
+ ;G("node16rk1fgdvx11390","rdf:type")="sp:CodedValue"
+ ;G("node16rk1fgdvx11558","code")="snomed:195967001"
+ ;G("node16rk1fgdvx11558","dcterms:title")="Asthma"
+ ;G("node16rk1fgdvx11558","rdf:type")="sp:CodedValue"
+ ;G("node16rk1fgdvx11578","code")="snomed:254837009"
+ ;G("node16rk1fgdvx11578","dcterms:title")="Primary malignant neoplasm of female breast"
+ ;G("node16rk1fgdvx11578","rdf:type")="sp:CodedValue"
+ ;G("node16rk1fgdvx11687","code")="snomed:8517006"
+ ;G("node16rk1fgdvx11687","dcterms:title")="History of tobacco use"
+ ;G("node16rk1fgdvx11687","rdf:type")="sp:CodedValue"
+ ;G("node16rk1fgdvx11716","code")="snomed:55822004"
+ ;G("node16rk1fgdvx11716","dcterms:title")="Hyperlipidemia"
+ ;G("node16rk1fgdvx11716","rdf:type")="sp:CodedValue"
+ ;G("smart:1577780/problems/69560e4721e1","belongsTo")="smart:1577780"
+ ;G("smart:1577780/problems/69560e4721e1","problemName")="node16rk1fgdvx11089"
+ ;G("smart:1577780/problems/69560e4721e1","rdf:type")="sp:Problem"
+ ;G("smart:1577780/problems/69560e4721e1","startDate")="2005-08-02"
+ ;G("smart:1577780/problems/06ef10c4e92c","belongsTo")="smart:1577780"
+ ;G("smart:1577780/problems/06ef10c4e92c","problemName")="node16rk1fgdvx11051"
+ ;G("smart:1577780/problems/06ef10c4e92c","rdf:type")="sp:Problem"
+ ;G("smart:1577780/problems/06ef10c4e92c","startDate")="2006-02-20"
+ ;G("smart:1577780/problems/9894ba9dfe5a","belongsTo")="smart:1577780"
+ ;G("smart:1577780/problems/9894ba9dfe5a","problemName")="node16rk1fgdvx11578"
+ ;G("smart:1577780/problems/9894ba9dfe5a","rdf:type")="sp:Problem"
+ ;G("smart:1577780/problems/9894ba9dfe5a","startDate")="2005-08-22"
+ ;G("smart:1577780/problems/c109aa7a0675","belongsTo")="smart:1577780"
+ ;G("smart:1577780/problems/c109aa7a0675","problemName")="node16rk1fgdvx11558"
+ ;G("smart:1577780/problems/c109aa7a0675","rdf:type")="sp:Problem"
+ ;G("smart:1577780/problems/c109aa7a0675","startDate")="2005-09-22"
+ ;G("smart:1577780/problems/1c50100614a2","belongsTo")="smart:1577780"
+ ;G("smart:1577780/problems/1c50100614a2","problemName")="node16rk1fgdvx11073"
+ ;G("smart:1577780/problems/1c50100614a2","rdf:type")="sp:Problem"
+ ;G("smart:1577780/problems/1c50100614a2","startDate")="2007-02-21"
+ ;G("smart:1577780/problems/083dffb2c4a0","belongsTo")="smart:1577780"
+ ;G("smart:1577780/problems/083dffb2c4a0","problemName")="node16rk1fgdvx11390"
+ ;G("smart:1577780/problems/083dffb2c4a0","rdf:type")="sp:Problem"
+ ;G("smart:1577780/problems/083dffb2c4a0","startDate")="2007-01-07"
+ ;G("smart:1577780/problems/762b5639a2d1","belongsTo")="smart:1577780"
+ ;G("smart:1577780/problems/762b5639a2d1","problemName")="node16rk1fgdvx11687"
+ ;G("smart:1577780/problems/762b5639a2d1","rdf:type")="sp:Problem"
+ ;G("smart:1577780/problems/762b5639a2d1","startDate")="2006-02-20"
+ ;G("smart:1577780/problems/9dc9053dd6f4","belongsTo")="smart:1577780"
+ ;G("smart:1577780/problems/9dc9053dd6f4","problemName")="node16rk1fgdvx11716"
+ ;G("smart:1577780/problems/9dc9053dd6f4","rdf:type")="sp:Problem"
+ ;G("smart:1577780/problems/9dc9053dd6f4","startDate")="2008-04-08"
+ ;G("smart:1577780/problems/e3fe9b7ee552","belongsTo")="smart:1577780"
+ ;G("smart:1577780/problems/e3fe9b7ee552","problemName")="node16rk1fgdvx10882"
+ ;G("smart:1577780/problems/e3fe9b7ee552","rdf:type")="sp:Problem"
+ ;G("smart:1577780/problems/e3fe9b7ee552","startDate")="2005-10-27"
+ ;G("smart:1577780/problems/9933307e8f95","belongsTo")="smart:1577780"
+ ;G("smart:1577780/problems/9933307e8f95","problemName")="node16rk1fgdvx11351"
+ ;G("smart:1577780/problems/9933307e8f95","rdf:type")="sp:Problem"
+ ;G("smart:1577780/problems/9933307e8f95","startDate")="2005-08-22"
+ ;G("snomed:188155002","dcterms:identifier")=188155002
+ ;G("snomed:188155002","dcterms:title")="Primary malignant neoplasm of lower outer quadrant of female breast"
+ ;G("snomed:188155002","rdf:type")="sp:Code"
+ ;G("snomed:188155002","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
+ ;G("snomed:195967001","dcterms:identifier")=195967001
+ ;G("snomed:195967001","dcterms:title")="Asthma"
+ ;G("snomed:195967001","rdf:type")="sp:Code"
+ ;G("snomed:195967001","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
+ ;G("snomed:254837009","dcterms:identifier")=254837009
+ ;G("snomed:254837009","dcterms:title")="Primary malignant neoplasm of female breast"
+ ;G("snomed:254837009","rdf:type")="sp:Code"
+ ;G("snomed:254837009","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
+ ;G("snomed:353295004","dcterms:identifier")=353295004
+ ;G("snomed:353295004","dcterms:title")="Toxic diffuse goiter"
+ ;G("snomed:353295004","rdf:type")="sp:Code"
+ ;G("snomed:353295004","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
+ ;G("snomed:38341003","dcterms:identifier")=38341003
+ ;G("snomed:38341003","dcterms:title")="Essential hypertension"
+ ;G("snomed:38341003","rdf:type")="sp:Code"
+ ;G("snomed:38341003","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
+ ;G("snomed:40930008","dcterms:identifier")=40930008
+ ;G("snomed:40930008","dcterms:title")="Hypothyroidism"
+ ;G("snomed:40930008","rdf:type")="sp:Code"
+ ;G("snomed:40930008","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
+ ;G("snomed:44054006","dcterms:identifier")=44054006
+ ;G("snomed:44054006","dcterms:title")="Diabetes mellitus type 2"
+ ;G("snomed:44054006","rdf:type")="sp:Code"
+ ;G("snomed:44054006","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
+ ;G("snomed:54302000","dcterms:identifier")=54302000
+ ;G("snomed:54302000","dcterms:title")="Disorder of breast"
+ ;G("snomed:54302000","rdf:type")="sp:Code"
+ ;G("snomed:54302000","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
+ ;G("snomed:55822004","dcterms:identifier")=55822004
+ ;G("snomed:55822004","dcterms:title")="Hyperlipidemia"
+ ;G("snomed:55822004","rdf:type")="sp:Code"
+ ;G("snomed:55822004","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
+ ;G("snomed:8517006","dcterms:identifier")=8517006
+ ;G("snomed:8517006","dcterms:title")="History of tobacco use"
+ ;G("snomed:8517006","rdf:type")="sp:Code"
+ ;G("snomed:8517006","system")="http://purl.bioontology.org/ontology/SNOMEDCT/"
+
+ ;
+PROB(GRTN,C0SARY) ; GRTN, passed by reference,
+ ; is the return name of the graph created. "" if none
+ ; C0SARY is passed in by reference and is the NHIN array of problems
+ ;
+ I $O(C0SARY("problem",""))="" D Q ;
+ . I $D(DEBUG) W !,"No Problems"
+ S GRTN="" ; default to no problems
+ N C0SGRF
+ S C0SGRF="vistaSmart:"_ZPATID_"/problems"
+ I $D(DEBUG) W !,"Processing ",C0SGRF
+ D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
+ D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
+ N FARY S FARY="C0XFARY"
+ D USEFARY^C0XF2N(FARY)
+ D VOCINIT^C0XUTIL
+ ;
+ D STARTADD^C0XF2N ; initialize to create triples
+ ;
+ N ZI S ZI=""
+ F S ZI=$O(C0SARY("problem",ZI)) Q:ZI="" D ;
+ . N LRN,ZR ; ZR is the local array for building the new triples
+ . S LRN=$NA(C0SARY("problem",ZI)) ; base for values in this lab result
+ . ;
+ . N PROBID ; unique Id for this problem
+ . S PROBID=C0SGRF_"/"_$$LKY17^C0XF2N ; use a random number
+ . ;
+ . ; i don't like this because the same problems gets a
+ . ; different ID every time it's reported. Can't trace it back to VistA
+ . ; I'd rather be using id@value ie "id@value")="118"
+ . ;
+ . N SNOMED S SNOMED=$G(@LRN@("icd@value"))
+ . N SNOGRF S SNOGRF="snomed:"_SNOMED
+ . N SNOTIT S SNOTIT=$G(@LRN@("name@value"))
+ . I $D(DEBUG) D ;
+ . . W !,"Processing Problem List ",PROBID
+ . . W !,"problem: ",SNOTIT
+ . . W !,"code: ",SNOMED
+ . ;
+ . ; first do the base result graph
+ . ;
+ . S ZR("rdf:type")="sp:Problem"
+ . S ZR("sp:belongsTo")=C0SGRF ; the subject for this patient's problems
+ . ; ie /vista/smart/99912345/problems
+ . ;
+ . N PROBNAME S PROBNAME=$$ANONS^C0XF2N ; new node for problem name
+ . S ZR("sp:problemName")=PROBNAME
+ . ;
+ . N STARTDT S STARTDT=$$SPDATE^C0SUTIL($G(@LRN@("entered@value")))
+ . S ZR("sp:startDate")=STARTDT
+ . ;
+ . D ADDINN^C0XF2N(C0SGRF,PROBID,.ZR) ; addIfNotNull the triples
+ . K ZR ; clean up
+ . ;
+ . ; create the problemName graph
+ . ;
+ . S ZR("rdf:type")="sp:CodedValue"
+ . S ZR("sp:code")="snomed:"_SNOMED
+ . S ZR("dcterms:title")=$G(@LRN@("name@value"))
+ . D ADDINN^C0XF2N(C0SGRF,PROBNAME,.ZR)
+ . K ZR
+ . ;
+ . ; create snomed graph
+ . ;
+ . S ZR("rdf:type")="sp:Code"
+ . S ZR("sp:system")="http://purl.bioontology.org/ontology/SNOMEDCT"
+ . S ZR("dcterms:identifier")=SNOMED
+ . S ZR("dcterms:title")=SNOTIT
+ . D ADDINN^C0XF2N(C0SGRF,SNOGRF,.ZR)
+ . K ZR
+ . ;
+ D BULKLOAD^C0XF2N(.C0XFDA)
+ S GRTN=C0SGRF
+ Q
+ ;
diff --git a/p/C0SPROB2.m b/p/C0SPROB2.m
index ab0a2a0..5fb34d8 100644
--- a/p/C0SPROB2.m
+++ b/p/C0SPROB2.m
@@ -1,343 +1,343 @@
-C0SPROB ; GPL - Smart Problem Processing ;5/01/12 17:05
- ;;0.1;C0S;nopatch;noreleasedate;Build 2
- ;Copyright 2012 George Lilly. Licensed under the terms of the GNU
- ;General Public License See attached copy of the License.
- ;
- ;This program is free software; you can redistribute it and/or modify
- ;it under the terms of the GNU General Public License as published by
- ;the Free Software Foundation; either version 2 of the License, or
- ;(at your option) any later version.
- ;
- ;This program is distributed in the hope that it will be useful,
- ;but WITHOUT ANY WARRANTY; without even the implied warranty of
- ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- ;GNU General Public License for more details.
- ;
- ;You should have received a copy of the GNU General Public License along
- ;with this program; if not, write to the Free Software Foundation, Inc.,
- ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
- ;
- Q
- ;
- ; sample VistA NHIN problem list
- ;
- ;^TMP("C0STBL",91,"problem",1,"acuity@value")="C"
- ;^TMP("C0STBL",91,"problem",1,"entered@value")=3110531
- ;^TMP("C0STBL",91,"problem",1,"facility@code")=100
- ;^TMP("C0STBL",91,"problem",1,"facility@name")="VOE OFFICE INSTITUTION"
- ;^TMP("C0STBL",91,"problem",1,"icd@value")=414.9
- ;^TMP("C0STBL",91,"problem",1,"id@value")=100
- ;^TMP("C0STBL",91,"problem",1,"location@value")="DR OFFICE"
- ;^TMP("C0STBL",91,"problem",1,"name@value")="Coronary Artery Disease"
- ;^TMP("C0STBL",91,"problem",1,"onset@value")=3100201
- ;^TMP("C0STBL",91,"problem",1,"provider@code")=63
- ;^TMP("C0STBL",91,"problem",1,"provider@name")="KING,MATTHEW MICHAEL"
- ;^TMP("C0STBL",91,"problem",1,"removed@value")=0
- ;^TMP("C0STBL",91,"problem",1,"sc@value")=0
- ;^TMP("C0STBL",91,"problem",1,"status@value")="A"
- ;^TMP("C0STBL",91,"problem",1,"unverified@value")=0
- ;^TMP("C0STBL",91,"problem",1,"updated@value")=3110531
- ;^TMP("C0STBL",91,"problem",2,"acuity@value")="C"
- ;^TMP("C0STBL",91,"problem",2,"entered@value")=3110602
- ;^TMP("C0STBL",91,"problem",2,"facility@code")=100
- ;^TMP("C0STBL",91,"problem",2,"facility@name")="VOE OFFICE INSTITUTION"
- ;^TMP("C0STBL",91,"problem",2,"icd@value")=780.2
- ;^TMP("C0STBL",91,"problem",2,"id@value")=108
- ;^TMP("C0STBL",91,"problem",2,"name@value")="Syncope and collapse"
- ;^TMP("C0STBL",91,"problem",2,"onset@value")=3110102
- ;^TMP("C0STBL",91,"problem",2,"provider@code")=63
- ;^TMP("C0STBL",91,"problem",2,"provider@name")="KING,MATTHEW MICHAEL"
- ;^TMP("C0STBL",91,"problem",2,"removed@value")=0
- ;^TMP("C0STBL",91,"problem",2,"sc@value")=0
- ;^TMP("C0STBL",91,"problem",2,"status@value")="A"
- ;^TMP("C0STBL",91,"problem",2,"unverified@value")=0
- ;^TMP("C0STBL",91,"problem",2,"updated@value")=3110602
- ;^TMP("C0STBL",91,"problem",3,"acuity@value")="C"
- ;^TMP("C0STBL",91,"problem",3,"entered@value")=3110602
- ;^TMP("C0STBL",91,"problem",3,"facility@code")=100
- ;^TMP("C0STBL",91,"problem",3,"facility@name")="VOE OFFICE INSTITUTION"
- ;^TMP("C0STBL",91,"problem",3,"icd@value")=433.91
- ;^TMP("C0STBL",91,"problem",3,"id@value")=109
- ;^TMP("C0STBL",91,"problem",3,"name@value")="Occlusion and Stenosis of Unspecifid Precerebral Artery with Cerebral Infarctio"
- ;^TMP("C0STBL",91,"problem",3,"onset@value")=3100101
- ;^TMP("C0STBL",91,"problem",3,"provider@code")=63
- ;^TMP("C0STBL",91,"problem",3,"provider@name")="KING,MATTHEW MICHAEL"
- ;^TMP("C0STBL",91,"problem",3,"removed@value")=0
- ;^TMP("C0STBL",91,"problem",3,"sc@value")=0
- ;^TMP("C0STBL",91,"problem",3,"status@value")="A"
- ;^TMP("C0STBL",91,"problem",3,"unverified@value")=0
- ;^TMP("C0STBL",91,"problem",3,"updated@value")=3110602
- ;^TMP("C0STBL",91,"problem",4,"entered@value")=3110603
- ;^TMP("C0STBL",91,"problem",4,"facility@code")=100
- ;^TMP("C0STBL",91,"problem",4,"facility@name")="VOE OFFICE INSTITUTION"
- ;^TMP("C0STBL",91,"problem",4,"icd@value")="00.66"
- ;^TMP("C0STBL",91,"problem",4,"id@value")=115
- ;^TMP("C0STBL",91,"problem",4,"location@value")="DR OFFICE"
- ;^TMP("C0STBL",91,"problem",4,"name@value")="00.66"
- ;^TMP("C0STBL",91,"problem",4,"provider@code")=63
- ;^TMP("C0STBL",91,"problem",4,"provider@name")="KING,MATTHEW MICHAEL"
- ;^TMP("C0STBL",91,"problem",4,"removed@value")=0
- ;^TMP("C0STBL",91,"problem",4,"status@value")="A"
- ;^TMP("C0STBL",91,"problem",4,"unverified@value")=0
- ;^TMP("C0STBL",91,"problem",4,"updated@value")=3110603
- ;^TMP("C0STBL",91,"problem",5,"entered@value")=3110603
- ;^TMP("C0STBL",91,"problem",5,"facility@code")=100
- ;^TMP("C0STBL",91,"problem",5,"facility@name")="VOE OFFICE INSTITUTION"
- ;^TMP("C0STBL",91,"problem",5,"icd@value")=37.21
- ;^TMP("C0STBL",91,"problem",5,"id@value")=116
- ;^TMP("C0STBL",91,"problem",5,"location@value")="DR OFFICE"
- ;^TMP("C0STBL",91,"problem",5,"name@value")=37.21
- ;^TMP("C0STBL",91,"problem",5,"provider@code")=63
- ;^TMP("C0STBL",91,"problem",5,"provider@name")="KING,MATTHEW MICHAEL"
- ;^TMP("C0STBL",91,"problem",5,"removed@value")=0
- ;^TMP("C0STBL",91,"problem",5,"status@value")="A"
- ;^TMP("C0STBL",91,"problem",5,"unverified@value")=0
- ;^TMP("C0STBL",91,"problem",5,"updated@value")=3110603
- ;^TMP("C0STBL",91,"problem",6,"entered@value")=3110603
- ;^TMP("C0STBL",91,"problem",6,"facility@code")=100
- ;^TMP("C0STBL",91,"problem",6,"facility@name")="VOE OFFICE INSTITUTION"
- ;^TMP("C0STBL",91,"problem",6,"icd@value")=81.51
- ;^TMP("C0STBL",91,"problem",6,"id@value")=117
- ;^TMP("C0STBL",91,"problem",6,"location@value")="DR OFFICE"
- ;^TMP("C0STBL",91,"problem",6,"name@value")=81.51
- ;^TMP("C0STBL",91,"problem",6,"provider@code")=63
- ;^TMP("C0STBL",91,"problem",6,"provider@name")="KING,MATTHEW MICHAEL"
- ;^TMP("C0STBL",91,"problem",6,"removed@value")=0
- ;^TMP("C0STBL",91,"problem",6,"status@value")="A"
- ;^TMP("C0STBL",91,"problem",6,"unverified@value")=0
- ;^TMP("C0STBL",91,"problem",6,"updated@value")=3110603
- ;^TMP("C0STBL",91,"problem",7,"entered@value")=3110603
- ;^TMP("C0STBL",91,"problem",7,"facility@code")=100
- ;^TMP("C0STBL",91,"problem",7,"facility@name")="VOE OFFICE INSTITUTION"
- ;^TMP("C0STBL",91,"problem",7,"icd@value")=47.09
- ;^TMP("C0STBL",91,"problem",7,"id@value")=118
- ;^TMP("C0STBL",91,"problem",7,"location@value")="DR OFFICE"
- ;^TMP("C0STBL",91,"problem",7,"name@value")=47.09
- ;^TMP("C0STBL",91,"problem",7,"provider@code")=63
- ;^TMP("C0STBL",91,"problem",7,"provider@name")="KING,MATTHEW MICHAEL"
- ;^TMP("C0STBL",91,"problem",7,"removed@value")=0
- ;^TMP("C0STBL",91,"problem",7,"status@value")="A"
- ;^TMP("C0STBL",91,"problem",7,"unverified@value")=0
- ;^TMP("C0STBL",91,"problem",7,"updated@value")=3110603
- ;^TMP("C0STBL",91,"problem",8,"entered@value")=3110603
- ;^TMP("C0STBL",91,"problem",8,"facility@code")=100
- ;^TMP("C0STBL",91,"problem",8,"facility@name")="VOE OFFICE INSTITUTION"
- ;^TMP("C0STBL",91,"problem",8,"icd@value")="250.00"
- ;^TMP("C0STBL",91,"problem",8,"id@value")=119
- ;^TMP("C0STBL",91,"problem",8,"location@value")="DR OFFICE"
- ;^TMP("C0STBL",91,"problem",8,"name@value")="Diabetes Mellitus without mentionof Complication, type II or unspecified type,"
- ;^TMP("C0STBL",91,"problem",8,"provider@code")=63
- ;^TMP("C0STBL",91,"problem",8,"provider@name")="KING,MATTHEW MICHAEL"
- ;^TMP("C0STBL",91,"problem",8,"removed@value")=0
- ;^TMP("C0STBL",91,"problem",8,"status@value")="A"
- ;^TMP("C0STBL",91,"problem",8,"unverified@value")=0
- ;^TMP("C0STBL",91,"problem",8,"updated@value")=3110603
- ;
- ; sample Smart lab result triples
- ;
- ;G("node16rk1fgdvx10882","code")="snomed:40930008"
- ;G("node16rk1fgdvx10882","dcterms:title")="Hypothyroidism"
- ;G("node16rk1fgdvx10882","rdf:type")="sp:CodedValue"
- ;G("node16rk1fgdvx11051","code")="snomed:188155002"
- ;G("node16rk1fgdvx11051","dcterms:title")="Primary malignant neoplasm of lower outer quadrant of female breast"
- ;G("node16rk1fgdvx11051","rdf:type")="sp:CodedValue"
- ;G("node16rk1fgdvx11073","code")="snomed:353295004"
- ;G("node16rk1fgdvx11073","dcterms:title")="Toxic diffuse goiter"
- ;G("node16rk1fgdvx11073","rdf:type")="sp:CodedValue"
- ;G("node16rk1fgdvx11089","code")="snomed:54302000"
- ;G("node16rk1fgdvx11089","dcterms:title")="Disorder of breast"
- ;G("node16rk1fgdvx11089","rdf:type")="sp:CodedValue"
- ;G("node16rk1fgdvx11351","code")="snomed:38341003"
- ;G("node16rk1fgdvx11351","dcterms:title")="Essential hypertension"
- ;G("node16rk1fgdvx11351","rdf:type")="sp:CodedValue"
- ;G("node16rk1fgdvx11390","code")="snomed:44054006"
- ;G("node16rk1fgdvx11390","dcterms:title")="Diabetes mellitus type 2"
- ;G("node16rk1fgdvx11390","rdf:type")="sp:CodedValue"
- ;G("node16rk1fgdvx11558","code")="snomed:195967001"
- ;G("node16rk1fgdvx11558","dcterms:title")="Asthma"
- ;G("node16rk1fgdvx11558","rdf:type")="sp:CodedValue"
- ;G("node16rk1fgdvx11578","code")="snomed:254837009"
- ;G("node16rk1fgdvx11578","dcterms:title")="Primary malignant neoplasm of female breast"
- ;G("node16rk1fgdvx11578","rdf:type")="sp:CodedValue"
- ;G("node16rk1fgdvx11687","code")="snomed:8517006"
- ;G("node16rk1fgdvx11687","dcterms:title")="History of tobacco use"
- ;G("node16rk1fgdvx11687","rdf:type")="sp:CodedValue"
- ;G("node16rk1fgdvx11716","code")="snomed:55822004"
- ;G("node16rk1fgdvx11716","dcterms:title")="Hyperlipidemia"
- ;G("node16rk1fgdvx11716","rdf:type")="sp:CodedValue"
- ;G("smart:1577780/problems/69560e4721e1","belongsTo")="smart:1577780"
- ;G("smart:1577780/problems/69560e4721e1","problemName")="node16rk1fgdvx11089"
- ;G("smart:1577780/problems/69560e4721e1","rdf:type")="sp:Problem"
- ;G("smart:1577780/problems/69560e4721e1","startDate")="2005-08-02"
- ;G("smart:1577780/problems/06ef10c4e92c","belongsTo")="smart:1577780"
- ;G("smart:1577780/problems/06ef10c4e92c","problemName")="node16rk1fgdvx11051"
- ;G("smart:1577780/problems/06ef10c4e92c","rdf:type")="sp:Problem"
- ;G("smart:1577780/problems/06ef10c4e92c","startDate")="2006-02-20"
- ;G("smart:1577780/problems/9894ba9dfe5a","belongsTo")="smart:1577780"
- ;G("smart:1577780/problems/9894ba9dfe5a","problemName")="node16rk1fgdvx11578"
- ;G("smart:1577780/problems/9894ba9dfe5a","rdf:type")="sp:Problem"
- ;G("smart:1577780/problems/9894ba9dfe5a","startDate")="2005-08-22"
- ;G("smart:1577780/problems/c109aa7a0675","belongsTo")="smart:1577780"
- ;G("smart:1577780/problems/c109aa7a0675","problemName")="node16rk1fgdvx11558"
- ;G("smart:1577780/problems/c109aa7a0675","rdf:type")="sp:Problem"
- ;G("smart:1577780/problems/c109aa7a0675","startDate")="2005-09-22"
- ;G("smart:1577780/problems/1c50100614a2","belongsTo")="smart:1577780"
- ;G("smart:1577780/problems/1c50100614a2","problemName")="node16rk1fgdvx11073"
- ;G("smart:1577780/problems/1c50100614a2","rdf:type")="sp:Problem"
- ;G("smart:1577780/problems/1c50100614a2","startDate")="2007-02-21"
- ;G("smart:1577780/problems/083dffb2c4a0","belongsTo")="smart:1577780"
- ;G("smart:1577780/problems/083dffb2c4a0","problemName")="node16rk1fgdvx11390"
- ;G("smart:1577780/problems/083dffb2c4a0","rdf:type")="sp:Problem"
- ;G("smart:1577780/problems/083dffb2c4a0","startDate")="2007-01-07"
- ;G("smart:1577780/problems/762b5639a2d1","belongsTo")="smart:1577780"
- ;G("smart:1577780/problems/762b5639a2d1","problemName")="node16rk1fgdvx11687"
- ;G("smart:1577780/problems/762b5639a2d1","rdf:type")="sp:Problem"
- ;G("smart:1577780/problems/762b5639a2d1","startDate")="2006-02-20"
- ;G("smart:1577780/problems/9dc9053dd6f4","belongsTo")="smart:1577780"
- ;G("smart:1577780/problems/9dc9053dd6f4","problemName")="node16rk1fgdvx11716"
- ;G("smart:1577780/problems/9dc9053dd6f4","rdf:type")="sp:Problem"
- ;G("smart:1577780/problems/9dc9053dd6f4","startDate")="2008-04-08"
- ;G("smart:1577780/problems/e3fe9b7ee552","belongsTo")="smart:1577780"
- ;G("smart:1577780/problems/e3fe9b7ee552","problemName")="node16rk1fgdvx10882"
- ;G("smart:1577780/problems/e3fe9b7ee552","rdf:type")="sp:Problem"
- ;G("smart:1577780/problems/e3fe9b7ee552","startDate")="2005-10-27"
- ;G("smart:1577780/problems/9933307e8f95","belongsTo")="smart:1577780"
- ;G("smart:1577780/problems/9933307e8f95","problemName")="node16rk1fgdvx11351"
- ;G("smart:1577780/problems/9933307e8f95","rdf:type")="sp:Problem"
- ;G("smart:1577780/problems/9933307e8f95","startDate")="2005-08-22"
- ;G("snomed:188155002","dcterms:identifier")=188155002
- ;G("snomed:188155002","dcterms:title")="Primary malignant neoplasm of lower outer quadrant of female breast"
- ;G("snomed:188155002","rdf:type")="sp:Code"
- ;G("snomed:188155002","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
- ;G("snomed:195967001","dcterms:identifier")=195967001
- ;G("snomed:195967001","dcterms:title")="Asthma"
- ;G("snomed:195967001","rdf:type")="sp:Code"
- ;G("snomed:195967001","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
- ;G("snomed:254837009","dcterms:identifier")=254837009
- ;G("snomed:254837009","dcterms:title")="Primary malignant neoplasm of female breast"
- ;G("snomed:254837009","rdf:type")="sp:Code"
- ;G("snomed:254837009","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
- ;G("snomed:353295004","dcterms:identifier")=353295004
- ;G("snomed:353295004","dcterms:title")="Toxic diffuse goiter"
- ;G("snomed:353295004","rdf:type")="sp:Code"
- ;G("snomed:353295004","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
- ;G("snomed:38341003","dcterms:identifier")=38341003
- ;G("snomed:38341003","dcterms:title")="Essential hypertension"
- ;G("snomed:38341003","rdf:type")="sp:Code"
- ;G("snomed:38341003","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
- ;G("snomed:40930008","dcterms:identifier")=40930008
- ;G("snomed:40930008","dcterms:title")="Hypothyroidism"
- ;G("snomed:40930008","rdf:type")="sp:Code"
- ;G("snomed:40930008","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
- ;G("snomed:44054006","dcterms:identifier")=44054006
- ;G("snomed:44054006","dcterms:title")="Diabetes mellitus type 2"
- ;G("snomed:44054006","rdf:type")="sp:Code"
- ;G("snomed:44054006","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
- ;G("snomed:54302000","dcterms:identifier")=54302000
- ;G("snomed:54302000","dcterms:title")="Disorder of breast"
- ;G("snomed:54302000","rdf:type")="sp:Code"
- ;G("snomed:54302000","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
- ;G("snomed:55822004","dcterms:identifier")=55822004
- ;G("snomed:55822004","dcterms:title")="Hyperlipidemia"
- ;G("snomed:55822004","rdf:type")="sp:Code"
- ;G("snomed:55822004","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
- ;G("snomed:8517006","dcterms:identifier")=8517006
- ;G("snomed:8517006","dcterms:title")="History of tobacco use"
- ;G("snomed:8517006","rdf:type")="sp:Code"
- ;G("snomed:8517006","system")="http://purl.bioontology.org/ontology/SNOMEDCT/"
-
- ;
-PROB(GRTN,C0SARY) ; GRTN, passed by reference,
- ; is the return name of the graph created. "" if none
- ; C0SARY is passed in by reference and is the NHIN array of problems
- ;
- I $O(C0SARY("problem",""))="" D Q ;
- . I $D(DEBUG) W !,"No Problems"
- S GRTN="" ; default to no problems
- N C0SGRF
- S C0SGRF="vistaSmart:"_ZPATID_"/problems"
- I $D(DEBUG) W !,"Processing ",C0SGRF
- D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
- D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
- N FARY S FARY="C0XFARY"
- D USEFARY^C0XF2N(FARY)
- D VOCINIT^C0XUTIL
- ;
- D STARTADD^C0XF2N ; initialize to create triples
- ;
- N ZI S ZI=""
- F S ZI=$O(C0SARY("problem",ZI)) Q:ZI="" D ;
- . N LRN,ZR ; ZR is the local array for building the new triples
- . S LRN=$NA(C0SARY("problem",ZI)) ; base for values in this lab result
- . ;
- . N PROBID ; unique Id for this problem
- . S PROBID=C0SGRF_"/"_$$LKY17^C0XF2N ; use a random number
- . ;
- . ; i don't like this because the same problems gets a
- . ; different ID every time it's reported. Can't trace it back to VistA
- . ; I'd rather be using id@value ie "id@value")="118"
- . ;
- . N SNOMED,ICD S ICD=$G(@LRN@("icd@value"))
- . S SNOMED=$$SNOMED(ICD) ; look up the snomed code in the map
- . N SNOGRF ; graph for SNOMED code
- . I SNOMED="" D ;
- . . S SNOMED=ICD ; if not found, return the ICD code
- . . S SNOGRF="icd9:"_SNOMED
- . E S SNOGRF="snomed:"_SNOMED
- . N SNOTIT S SNOTIT=$G(@LRN@("name@value"))
- . I $D(DEBUG) D ;
- . . W !,"Processing Problem List ",PROBID
- . . W !,"problem: ",SNOTIT
- . . W !,"code: ",SNOMED
- . ;
- . ; first do the base result graph
- . ;
- . S ZR("rdf:type")="sp:Problem"
- . S ZR("sp:belongsTo")=C0SGRF ; the subject for this patient's problems
- . ; ie /vista/smart/99912345/problems
- . ;
- . N PROBNAME S PROBNAME=$$ANONS^C0XF2N ; new node for problem name
- . S ZR("sp:problemName")=PROBNAME
- . ;
- . N STARTDT S STARTDT=$$SPDATE^C0SUTIL($G(@LRN@("entered@value")))
- . S ZR("sp:startDate")=STARTDT
- . ;
- . D ADDINN^C0XF2N(C0SGRF,PROBID,.ZR) ; addIfNotNull the triples
- . K ZR ; clean up
- . ;
- . ; create the problemName graph
- . ;
- . S ZR("rdf:type")="sp:CodedValue"
- . ;S ZR("sp:code")="snomed:"_SNOMED
- . S ZR("sp:code")=SNOGRF
- . S ZR("dcterms:title")=$G(@LRN@("name@value"))
- . D ADDINN^C0XF2N(C0SGRF,PROBNAME,.ZR)
- . K ZR
- . ;
- . ; create snomed graph
- . ;
- . S ZR("rdf:type")="sp:Code"
- . S ZR("sp:system")="http://purl.bioontology.org/ontology/SNOMEDCT"
- . I SNOGRF["icd9" S ZR("sp:system")="http://purl.bioontology.org/ontology/ICD9"
- . S ZR("dcterms:identifier")=SNOMED
- . S ZR("dcterms:title")=SNOTIT
- . D ADDINN^C0XF2N(C0SGRF,SNOGRF,.ZR)
- . K ZR
- . ;
- D BULKLOAD^C0XF2N(.C0XFDA)
- S GRTN=C0SGRF
- Q
- ;
-SNOMED(ZICD) ; extrinsic which returns SNOMED code given an ICD9 code
- ; requires the mapping table installed in the triplestore
- ;
- N ZSN,ZARY,ZSUB,ZSUBS
- I $E(ZICD,$L(ZICD))="." S ZICD=$P(ZICD,".",1) ; handle trailing dots
- D subjects^C0XGET1(.ZSUBS,"cg:ontology#code",ZICD) ; subjects with the ICD9 code
- S ZSUB=$O(ZSUBS("")) ; pick the first one
- I ZSUB="" Q ""
- D objects^C0XGET1(.ZARY,ZSUB,"cg:ontology#toCode")
- S ZSN=$O(ZARY(""))
- I $D(DEBUG) W !,ZSN," ",$$object^C0XGET1(ZSUB,"rdfs:label")
- Q ZSN
- ;
\ No newline at end of file
+C0SPROB ; GPL - Smart Problem Processing ;5/01/12 17:05
+ ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
+ ;Copyright 2012 George Lilly. Licensed under the terms of the GNU
+ ;General Public License See attached copy of the License.
+ ;
+ ;This program is free software; you can redistribute it and/or modify
+ ;it under the terms of the GNU General Public License as published by
+ ;the Free Software Foundation; either version 2 of the License, or
+ ;(at your option) any later version.
+ ;
+ ;This program is distributed in the hope that it will be useful,
+ ;but WITHOUT ANY WARRANTY; without even the implied warranty of
+ ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ ;GNU General Public License for more details.
+ ;
+ ;You should have received a copy of the GNU General Public License along
+ ;with this program; if not, write to the Free Software Foundation, Inc.,
+ ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+ ;
+ Q
+ ;
+ ; sample VistA NHIN problem list
+ ;
+ ;^TMP("C0STBL",91,"problem",1,"acuity@value")="C"
+ ;^TMP("C0STBL",91,"problem",1,"entered@value")=3110531
+ ;^TMP("C0STBL",91,"problem",1,"facility@code")=100
+ ;^TMP("C0STBL",91,"problem",1,"facility@name")="VOE OFFICE INSTITUTION"
+ ;^TMP("C0STBL",91,"problem",1,"icd@value")=414.9
+ ;^TMP("C0STBL",91,"problem",1,"id@value")=100
+ ;^TMP("C0STBL",91,"problem",1,"location@value")="DR OFFICE"
+ ;^TMP("C0STBL",91,"problem",1,"name@value")="Coronary Artery Disease"
+ ;^TMP("C0STBL",91,"problem",1,"onset@value")=3100201
+ ;^TMP("C0STBL",91,"problem",1,"provider@code")=63
+ ;^TMP("C0STBL",91,"problem",1,"provider@name")="KING,MATTHEW MICHAEL"
+ ;^TMP("C0STBL",91,"problem",1,"removed@value")=0
+ ;^TMP("C0STBL",91,"problem",1,"sc@value")=0
+ ;^TMP("C0STBL",91,"problem",1,"status@value")="A"
+ ;^TMP("C0STBL",91,"problem",1,"unverified@value")=0
+ ;^TMP("C0STBL",91,"problem",1,"updated@value")=3110531
+ ;^TMP("C0STBL",91,"problem",2,"acuity@value")="C"
+ ;^TMP("C0STBL",91,"problem",2,"entered@value")=3110602
+ ;^TMP("C0STBL",91,"problem",2,"facility@code")=100
+ ;^TMP("C0STBL",91,"problem",2,"facility@name")="VOE OFFICE INSTITUTION"
+ ;^TMP("C0STBL",91,"problem",2,"icd@value")=780.2
+ ;^TMP("C0STBL",91,"problem",2,"id@value")=108
+ ;^TMP("C0STBL",91,"problem",2,"name@value")="Syncope and collapse"
+ ;^TMP("C0STBL",91,"problem",2,"onset@value")=3110102
+ ;^TMP("C0STBL",91,"problem",2,"provider@code")=63
+ ;^TMP("C0STBL",91,"problem",2,"provider@name")="KING,MATTHEW MICHAEL"
+ ;^TMP("C0STBL",91,"problem",2,"removed@value")=0
+ ;^TMP("C0STBL",91,"problem",2,"sc@value")=0
+ ;^TMP("C0STBL",91,"problem",2,"status@value")="A"
+ ;^TMP("C0STBL",91,"problem",2,"unverified@value")=0
+ ;^TMP("C0STBL",91,"problem",2,"updated@value")=3110602
+ ;^TMP("C0STBL",91,"problem",3,"acuity@value")="C"
+ ;^TMP("C0STBL",91,"problem",3,"entered@value")=3110602
+ ;^TMP("C0STBL",91,"problem",3,"facility@code")=100
+ ;^TMP("C0STBL",91,"problem",3,"facility@name")="VOE OFFICE INSTITUTION"
+ ;^TMP("C0STBL",91,"problem",3,"icd@value")=433.91
+ ;^TMP("C0STBL",91,"problem",3,"id@value")=109
+ ;^TMP("C0STBL",91,"problem",3,"name@value")="Occlusion and Stenosis of Unspecifid Precerebral Artery with Cerebral Infarctio"
+ ;^TMP("C0STBL",91,"problem",3,"onset@value")=3100101
+ ;^TMP("C0STBL",91,"problem",3,"provider@code")=63
+ ;^TMP("C0STBL",91,"problem",3,"provider@name")="KING,MATTHEW MICHAEL"
+ ;^TMP("C0STBL",91,"problem",3,"removed@value")=0
+ ;^TMP("C0STBL",91,"problem",3,"sc@value")=0
+ ;^TMP("C0STBL",91,"problem",3,"status@value")="A"
+ ;^TMP("C0STBL",91,"problem",3,"unverified@value")=0
+ ;^TMP("C0STBL",91,"problem",3,"updated@value")=3110602
+ ;^TMP("C0STBL",91,"problem",4,"entered@value")=3110603
+ ;^TMP("C0STBL",91,"problem",4,"facility@code")=100
+ ;^TMP("C0STBL",91,"problem",4,"facility@name")="VOE OFFICE INSTITUTION"
+ ;^TMP("C0STBL",91,"problem",4,"icd@value")="00.66"
+ ;^TMP("C0STBL",91,"problem",4,"id@value")=115
+ ;^TMP("C0STBL",91,"problem",4,"location@value")="DR OFFICE"
+ ;^TMP("C0STBL",91,"problem",4,"name@value")="00.66"
+ ;^TMP("C0STBL",91,"problem",4,"provider@code")=63
+ ;^TMP("C0STBL",91,"problem",4,"provider@name")="KING,MATTHEW MICHAEL"
+ ;^TMP("C0STBL",91,"problem",4,"removed@value")=0
+ ;^TMP("C0STBL",91,"problem",4,"status@value")="A"
+ ;^TMP("C0STBL",91,"problem",4,"unverified@value")=0
+ ;^TMP("C0STBL",91,"problem",4,"updated@value")=3110603
+ ;^TMP("C0STBL",91,"problem",5,"entered@value")=3110603
+ ;^TMP("C0STBL",91,"problem",5,"facility@code")=100
+ ;^TMP("C0STBL",91,"problem",5,"facility@name")="VOE OFFICE INSTITUTION"
+ ;^TMP("C0STBL",91,"problem",5,"icd@value")=37.21
+ ;^TMP("C0STBL",91,"problem",5,"id@value")=116
+ ;^TMP("C0STBL",91,"problem",5,"location@value")="DR OFFICE"
+ ;^TMP("C0STBL",91,"problem",5,"name@value")=37.21
+ ;^TMP("C0STBL",91,"problem",5,"provider@code")=63
+ ;^TMP("C0STBL",91,"problem",5,"provider@name")="KING,MATTHEW MICHAEL"
+ ;^TMP("C0STBL",91,"problem",5,"removed@value")=0
+ ;^TMP("C0STBL",91,"problem",5,"status@value")="A"
+ ;^TMP("C0STBL",91,"problem",5,"unverified@value")=0
+ ;^TMP("C0STBL",91,"problem",5,"updated@value")=3110603
+ ;^TMP("C0STBL",91,"problem",6,"entered@value")=3110603
+ ;^TMP("C0STBL",91,"problem",6,"facility@code")=100
+ ;^TMP("C0STBL",91,"problem",6,"facility@name")="VOE OFFICE INSTITUTION"
+ ;^TMP("C0STBL",91,"problem",6,"icd@value")=81.51
+ ;^TMP("C0STBL",91,"problem",6,"id@value")=117
+ ;^TMP("C0STBL",91,"problem",6,"location@value")="DR OFFICE"
+ ;^TMP("C0STBL",91,"problem",6,"name@value")=81.51
+ ;^TMP("C0STBL",91,"problem",6,"provider@code")=63
+ ;^TMP("C0STBL",91,"problem",6,"provider@name")="KING,MATTHEW MICHAEL"
+ ;^TMP("C0STBL",91,"problem",6,"removed@value")=0
+ ;^TMP("C0STBL",91,"problem",6,"status@value")="A"
+ ;^TMP("C0STBL",91,"problem",6,"unverified@value")=0
+ ;^TMP("C0STBL",91,"problem",6,"updated@value")=3110603
+ ;^TMP("C0STBL",91,"problem",7,"entered@value")=3110603
+ ;^TMP("C0STBL",91,"problem",7,"facility@code")=100
+ ;^TMP("C0STBL",91,"problem",7,"facility@name")="VOE OFFICE INSTITUTION"
+ ;^TMP("C0STBL",91,"problem",7,"icd@value")=47.09
+ ;^TMP("C0STBL",91,"problem",7,"id@value")=118
+ ;^TMP("C0STBL",91,"problem",7,"location@value")="DR OFFICE"
+ ;^TMP("C0STBL",91,"problem",7,"name@value")=47.09
+ ;^TMP("C0STBL",91,"problem",7,"provider@code")=63
+ ;^TMP("C0STBL",91,"problem",7,"provider@name")="KING,MATTHEW MICHAEL"
+ ;^TMP("C0STBL",91,"problem",7,"removed@value")=0
+ ;^TMP("C0STBL",91,"problem",7,"status@value")="A"
+ ;^TMP("C0STBL",91,"problem",7,"unverified@value")=0
+ ;^TMP("C0STBL",91,"problem",7,"updated@value")=3110603
+ ;^TMP("C0STBL",91,"problem",8,"entered@value")=3110603
+ ;^TMP("C0STBL",91,"problem",8,"facility@code")=100
+ ;^TMP("C0STBL",91,"problem",8,"facility@name")="VOE OFFICE INSTITUTION"
+ ;^TMP("C0STBL",91,"problem",8,"icd@value")="250.00"
+ ;^TMP("C0STBL",91,"problem",8,"id@value")=119
+ ;^TMP("C0STBL",91,"problem",8,"location@value")="DR OFFICE"
+ ;^TMP("C0STBL",91,"problem",8,"name@value")="Diabetes Mellitus without mentionof Complication, type II or unspecified type,"
+ ;^TMP("C0STBL",91,"problem",8,"provider@code")=63
+ ;^TMP("C0STBL",91,"problem",8,"provider@name")="KING,MATTHEW MICHAEL"
+ ;^TMP("C0STBL",91,"problem",8,"removed@value")=0
+ ;^TMP("C0STBL",91,"problem",8,"status@value")="A"
+ ;^TMP("C0STBL",91,"problem",8,"unverified@value")=0
+ ;^TMP("C0STBL",91,"problem",8,"updated@value")=3110603
+ ;
+ ; sample Smart lab result triples
+ ;
+ ;G("node16rk1fgdvx10882","code")="snomed:40930008"
+ ;G("node16rk1fgdvx10882","dcterms:title")="Hypothyroidism"
+ ;G("node16rk1fgdvx10882","rdf:type")="sp:CodedValue"
+ ;G("node16rk1fgdvx11051","code")="snomed:188155002"
+ ;G("node16rk1fgdvx11051","dcterms:title")="Primary malignant neoplasm of lower outer quadrant of female breast"
+ ;G("node16rk1fgdvx11051","rdf:type")="sp:CodedValue"
+ ;G("node16rk1fgdvx11073","code")="snomed:353295004"
+ ;G("node16rk1fgdvx11073","dcterms:title")="Toxic diffuse goiter"
+ ;G("node16rk1fgdvx11073","rdf:type")="sp:CodedValue"
+ ;G("node16rk1fgdvx11089","code")="snomed:54302000"
+ ;G("node16rk1fgdvx11089","dcterms:title")="Disorder of breast"
+ ;G("node16rk1fgdvx11089","rdf:type")="sp:CodedValue"
+ ;G("node16rk1fgdvx11351","code")="snomed:38341003"
+ ;G("node16rk1fgdvx11351","dcterms:title")="Essential hypertension"
+ ;G("node16rk1fgdvx11351","rdf:type")="sp:CodedValue"
+ ;G("node16rk1fgdvx11390","code")="snomed:44054006"
+ ;G("node16rk1fgdvx11390","dcterms:title")="Diabetes mellitus type 2"
+ ;G("node16rk1fgdvx11390","rdf:type")="sp:CodedValue"
+ ;G("node16rk1fgdvx11558","code")="snomed:195967001"
+ ;G("node16rk1fgdvx11558","dcterms:title")="Asthma"
+ ;G("node16rk1fgdvx11558","rdf:type")="sp:CodedValue"
+ ;G("node16rk1fgdvx11578","code")="snomed:254837009"
+ ;G("node16rk1fgdvx11578","dcterms:title")="Primary malignant neoplasm of female breast"
+ ;G("node16rk1fgdvx11578","rdf:type")="sp:CodedValue"
+ ;G("node16rk1fgdvx11687","code")="snomed:8517006"
+ ;G("node16rk1fgdvx11687","dcterms:title")="History of tobacco use"
+ ;G("node16rk1fgdvx11687","rdf:type")="sp:CodedValue"
+ ;G("node16rk1fgdvx11716","code")="snomed:55822004"
+ ;G("node16rk1fgdvx11716","dcterms:title")="Hyperlipidemia"
+ ;G("node16rk1fgdvx11716","rdf:type")="sp:CodedValue"
+ ;G("smart:1577780/problems/69560e4721e1","belongsTo")="smart:1577780"
+ ;G("smart:1577780/problems/69560e4721e1","problemName")="node16rk1fgdvx11089"
+ ;G("smart:1577780/problems/69560e4721e1","rdf:type")="sp:Problem"
+ ;G("smart:1577780/problems/69560e4721e1","startDate")="2005-08-02"
+ ;G("smart:1577780/problems/06ef10c4e92c","belongsTo")="smart:1577780"
+ ;G("smart:1577780/problems/06ef10c4e92c","problemName")="node16rk1fgdvx11051"
+ ;G("smart:1577780/problems/06ef10c4e92c","rdf:type")="sp:Problem"
+ ;G("smart:1577780/problems/06ef10c4e92c","startDate")="2006-02-20"
+ ;G("smart:1577780/problems/9894ba9dfe5a","belongsTo")="smart:1577780"
+ ;G("smart:1577780/problems/9894ba9dfe5a","problemName")="node16rk1fgdvx11578"
+ ;G("smart:1577780/problems/9894ba9dfe5a","rdf:type")="sp:Problem"
+ ;G("smart:1577780/problems/9894ba9dfe5a","startDate")="2005-08-22"
+ ;G("smart:1577780/problems/c109aa7a0675","belongsTo")="smart:1577780"
+ ;G("smart:1577780/problems/c109aa7a0675","problemName")="node16rk1fgdvx11558"
+ ;G("smart:1577780/problems/c109aa7a0675","rdf:type")="sp:Problem"
+ ;G("smart:1577780/problems/c109aa7a0675","startDate")="2005-09-22"
+ ;G("smart:1577780/problems/1c50100614a2","belongsTo")="smart:1577780"
+ ;G("smart:1577780/problems/1c50100614a2","problemName")="node16rk1fgdvx11073"
+ ;G("smart:1577780/problems/1c50100614a2","rdf:type")="sp:Problem"
+ ;G("smart:1577780/problems/1c50100614a2","startDate")="2007-02-21"
+ ;G("smart:1577780/problems/083dffb2c4a0","belongsTo")="smart:1577780"
+ ;G("smart:1577780/problems/083dffb2c4a0","problemName")="node16rk1fgdvx11390"
+ ;G("smart:1577780/problems/083dffb2c4a0","rdf:type")="sp:Problem"
+ ;G("smart:1577780/problems/083dffb2c4a0","startDate")="2007-01-07"
+ ;G("smart:1577780/problems/762b5639a2d1","belongsTo")="smart:1577780"
+ ;G("smart:1577780/problems/762b5639a2d1","problemName")="node16rk1fgdvx11687"
+ ;G("smart:1577780/problems/762b5639a2d1","rdf:type")="sp:Problem"
+ ;G("smart:1577780/problems/762b5639a2d1","startDate")="2006-02-20"
+ ;G("smart:1577780/problems/9dc9053dd6f4","belongsTo")="smart:1577780"
+ ;G("smart:1577780/problems/9dc9053dd6f4","problemName")="node16rk1fgdvx11716"
+ ;G("smart:1577780/problems/9dc9053dd6f4","rdf:type")="sp:Problem"
+ ;G("smart:1577780/problems/9dc9053dd6f4","startDate")="2008-04-08"
+ ;G("smart:1577780/problems/e3fe9b7ee552","belongsTo")="smart:1577780"
+ ;G("smart:1577780/problems/e3fe9b7ee552","problemName")="node16rk1fgdvx10882"
+ ;G("smart:1577780/problems/e3fe9b7ee552","rdf:type")="sp:Problem"
+ ;G("smart:1577780/problems/e3fe9b7ee552","startDate")="2005-10-27"
+ ;G("smart:1577780/problems/9933307e8f95","belongsTo")="smart:1577780"
+ ;G("smart:1577780/problems/9933307e8f95","problemName")="node16rk1fgdvx11351"
+ ;G("smart:1577780/problems/9933307e8f95","rdf:type")="sp:Problem"
+ ;G("smart:1577780/problems/9933307e8f95","startDate")="2005-08-22"
+ ;G("snomed:188155002","dcterms:identifier")=188155002
+ ;G("snomed:188155002","dcterms:title")="Primary malignant neoplasm of lower outer quadrant of female breast"
+ ;G("snomed:188155002","rdf:type")="sp:Code"
+ ;G("snomed:188155002","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
+ ;G("snomed:195967001","dcterms:identifier")=195967001
+ ;G("snomed:195967001","dcterms:title")="Asthma"
+ ;G("snomed:195967001","rdf:type")="sp:Code"
+ ;G("snomed:195967001","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
+ ;G("snomed:254837009","dcterms:identifier")=254837009
+ ;G("snomed:254837009","dcterms:title")="Primary malignant neoplasm of female breast"
+ ;G("snomed:254837009","rdf:type")="sp:Code"
+ ;G("snomed:254837009","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
+ ;G("snomed:353295004","dcterms:identifier")=353295004
+ ;G("snomed:353295004","dcterms:title")="Toxic diffuse goiter"
+ ;G("snomed:353295004","rdf:type")="sp:Code"
+ ;G("snomed:353295004","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
+ ;G("snomed:38341003","dcterms:identifier")=38341003
+ ;G("snomed:38341003","dcterms:title")="Essential hypertension"
+ ;G("snomed:38341003","rdf:type")="sp:Code"
+ ;G("snomed:38341003","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
+ ;G("snomed:40930008","dcterms:identifier")=40930008
+ ;G("snomed:40930008","dcterms:title")="Hypothyroidism"
+ ;G("snomed:40930008","rdf:type")="sp:Code"
+ ;G("snomed:40930008","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
+ ;G("snomed:44054006","dcterms:identifier")=44054006
+ ;G("snomed:44054006","dcterms:title")="Diabetes mellitus type 2"
+ ;G("snomed:44054006","rdf:type")="sp:Code"
+ ;G("snomed:44054006","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
+ ;G("snomed:54302000","dcterms:identifier")=54302000
+ ;G("snomed:54302000","dcterms:title")="Disorder of breast"
+ ;G("snomed:54302000","rdf:type")="sp:Code"
+ ;G("snomed:54302000","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
+ ;G("snomed:55822004","dcterms:identifier")=55822004
+ ;G("snomed:55822004","dcterms:title")="Hyperlipidemia"
+ ;G("snomed:55822004","rdf:type")="sp:Code"
+ ;G("snomed:55822004","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
+ ;G("snomed:8517006","dcterms:identifier")=8517006
+ ;G("snomed:8517006","dcterms:title")="History of tobacco use"
+ ;G("snomed:8517006","rdf:type")="sp:Code"
+ ;G("snomed:8517006","system")="http://purl.bioontology.org/ontology/SNOMEDCT/"
+
+ ;
+PROB(GRTN,C0SARY) ; GRTN, passed by reference,
+ ; is the return name of the graph created. "" if none
+ ; C0SARY is passed in by reference and is the NHIN array of problems
+ ;
+ I $O(C0SARY("problem",""))="" D Q ;
+ . I $D(DEBUG) W !,"No Problems"
+ S GRTN="" ; default to no problems
+ N C0SGRF
+ S C0SGRF="vistaSmart:"_ZPATID_"/problems"
+ I $D(DEBUG) W !,"Processing ",C0SGRF
+ D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
+ D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
+ N FARY S FARY="C0XFARY"
+ D USEFARY^C0XF2N(FARY)
+ D VOCINIT^C0XUTIL
+ ;
+ D STARTADD^C0XF2N ; initialize to create triples
+ ;
+ N ZI S ZI=""
+ F S ZI=$O(C0SARY("problem",ZI)) Q:ZI="" D ;
+ . N LRN,ZR ; ZR is the local array for building the new triples
+ . S LRN=$NA(C0SARY("problem",ZI)) ; base for values in this lab result
+ . ;
+ . N PROBID ; unique Id for this problem
+ . S PROBID=C0SGRF_"/"_$$LKY17^C0XF2N ; use a random number
+ . ;
+ . ; i don't like this because the same problems gets a
+ . ; different ID every time it's reported. Can't trace it back to VistA
+ . ; I'd rather be using id@value ie "id@value")="118"
+ . ;
+ . N SNOMED,ICD S ICD=$G(@LRN@("icd@value"))
+ . S SNOMED=$$SNOMED(ICD) ; look up the snomed code in the map
+ . N SNOGRF ; graph for SNOMED code
+ . I SNOMED="" D ;
+ . . S SNOMED=ICD ; if not found, return the ICD code
+ . . S SNOGRF="icd9:"_SNOMED
+ . E S SNOGRF="snomed:"_SNOMED
+ . N SNOTIT S SNOTIT=$G(@LRN@("name@value"))
+ . I $D(DEBUG) D ;
+ . . W !,"Processing Problem List ",PROBID
+ . . W !,"problem: ",SNOTIT
+ . . W !,"code: ",SNOMED
+ . ;
+ . ; first do the base result graph
+ . ;
+ . S ZR("rdf:type")="sp:Problem"
+ . S ZR("sp:belongsTo")=C0SGRF ; the subject for this patient's problems
+ . ; ie /vista/smart/99912345/problems
+ . ;
+ . N PROBNAME S PROBNAME=$$ANONS^C0XF2N ; new node for problem name
+ . S ZR("sp:problemName")=PROBNAME
+ . ;
+ . N STARTDT S STARTDT=$$SPDATE^C0SUTIL($G(@LRN@("entered@value")))
+ . S ZR("sp:startDate")=STARTDT
+ . ;
+ . D ADDINN^C0XF2N(C0SGRF,PROBID,.ZR) ; addIfNotNull the triples
+ . K ZR ; clean up
+ . ;
+ . ; create the problemName graph
+ . ;
+ . S ZR("rdf:type")="sp:CodedValue"
+ . ;S ZR("sp:code")="snomed:"_SNOMED
+ . S ZR("sp:code")=SNOGRF
+ . S ZR("dcterms:title")=$G(@LRN@("name@value"))
+ . D ADDINN^C0XF2N(C0SGRF,PROBNAME,.ZR)
+ . K ZR
+ . ;
+ . ; create snomed graph
+ . ;
+ . S ZR("rdf:type")="sp:Code"
+ . S ZR("sp:system")="http://purl.bioontology.org/ontology/SNOMEDCT"
+ . I SNOGRF["icd9" S ZR("sp:system")="http://purl.bioontology.org/ontology/ICD9"
+ . S ZR("dcterms:identifier")=SNOMED
+ . S ZR("dcterms:title")=SNOTIT
+ . D ADDINN^C0XF2N(C0SGRF,SNOGRF,.ZR)
+ . K ZR
+ . ;
+ D BULKLOAD^C0XF2N(.C0XFDA)
+ S GRTN=C0SGRF
+ Q
+ ;
+SNOMED(ZICD) ; extrinsic which returns SNOMED code given an ICD9 code
+ ; requires the mapping table installed in the triplestore
+ ;
+ N ZSN,ZARY,ZSUB,ZSUBS
+ I $E(ZICD,$L(ZICD))="." S ZICD=$P(ZICD,".",1) ; handle trailing dots
+ D subjects^C0XGET1(.ZSUBS,"cg:ontology#code",ZICD) ; subjects with the ICD9 code
+ S ZSUB=$O(ZSUBS("")) ; pick the first one
+ I ZSUB="" Q ""
+ D objects^C0XGET1(.ZARY,ZSUB,"cg:ontology#toCode")
+ S ZSN=$O(ZARY(""))
+ I $D(DEBUG) W !,ZSN," ",$$object^C0XGET1(ZSUB,"rdfs:label")
+ Q ZSN
+ ;
diff --git a/p/C0STBL.m b/p/C0STBL.m
index 516af92..2f66db6 100644
--- a/p/C0STBL.m
+++ b/p/C0STBL.m
@@ -1,54 +1,54 @@
-C0STBL ; GPL - Smart Container CREATE A TABLE OF NHINV VALUES;2/22/12 17:05
- ;;0.1;C0S;nopatch;noreleasedate;Build 2
- ;Copyright 2012 George Lilly. Licensed under the terms of the GNU
- ;General Public License See attached copy of the License.
- ;
- ;This program is free software; you can redistribute it and/or modify
- ;it under the terms of the GNU General Public License as published by
- ;the Free Software Foundation; either version 2 of the License, or
- ;(at your option) any later version.
- ;
- ;This program is distributed in the hope that it will be useful,
- ;but WITHOUT ANY WARRANTY; without even the implied warranty of
- ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- ;GNU General Public License for more details.
- ;
- ;You should have received a copy of the GNU General Public License along
- ;with this program; if not, write to the Free Software Foundation, Inc.,
- ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
- ;
- Q
-EN(BEGDFN,DFNCNT,ZPART) ; START IS A DFN
- I '$D(BEGDFN) S BDGDFN=""
- I '$D(DFNCNT) S DFNCNT=150
- I '$D(ZPART) S ZPART=""
- N ZTBL S ZTBL=$NA(^TMP("C0STBL"))
- N ZI,ZCNT,ZG
- S ZI=BEGDFN
- S ZCNT=0
- F S ZI=$O(^DPT(ZI)) Q:(+ZI=0)!(ZCNT>DFNCNT) D ;
- . S ZCNT=ZCNT+1
- . W ZI," "
- . K ZG
- . D EN^C0SNHIN(.ZG,ZI,ZPART)
- . M @ZTBL@(ZI)=ZG
- . K G
- . ;D EN^C0SMART(.G,ZI,"med")
- . ;I $D(G) W !,$$output^C0XGET1("G")
- . ;k G
- . ;D EN^C0SMART(.G,ZI,"patient")
- . ;I $D(G) W !,$$output^C0XGET1("G")
- . ;K G
- . ;D EN^C0SMART(.G,ZI,"lab")
- . ;I $D(G) W !,$$output^C0XGET1("G")
- . ;K G
- . D EN^C0SMART(.G,ZI,"problem")
- . ;I $D(G) W !,$$output^C0XGET1("G")
- Q
- ;
-LOADHACK ;
- N ZI
- F ZI=2:1:374 D ;
- . D IMPORT^C0XF2N("hack"_ZI_".xml","/home/vista/hack/")
- Q
- ;
\ No newline at end of file
+C0STBL ; GPL - Smart Container CREATE A TABLE OF NHINV VALUES;2/22/12 17:05
+ ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
+ ;Copyright 2012 George Lilly. Licensed under the terms of the GNU
+ ;General Public License See attached copy of the License.
+ ;
+ ;This program is free software; you can redistribute it and/or modify
+ ;it under the terms of the GNU General Public License as published by
+ ;the Free Software Foundation; either version 2 of the License, or
+ ;(at your option) any later version.
+ ;
+ ;This program is distributed in the hope that it will be useful,
+ ;but WITHOUT ANY WARRANTY; without even the implied warranty of
+ ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ ;GNU General Public License for more details.
+ ;
+ ;You should have received a copy of the GNU General Public License along
+ ;with this program; if not, write to the Free Software Foundation, Inc.,
+ ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+ ;
+ Q
+EN(BEGDFN,DFNCNT,ZPART) ; START IS A DFN
+ I '$D(BEGDFN) S BDGDFN=""
+ I '$D(DFNCNT) S DFNCNT=150
+ I '$D(ZPART) S ZPART=""
+ N ZTBL S ZTBL=$NA(^TMP("C0STBL"))
+ N ZI,ZCNT,ZG
+ S ZI=BEGDFN
+ S ZCNT=0
+ F S ZI=$O(^DPT(ZI)) Q:(+ZI=0)!(ZCNT>DFNCNT) D ;
+ . S ZCNT=ZCNT+1
+ . W ZI," "
+ . K ZG
+ . D EN^C0SNHIN(.ZG,ZI,ZPART)
+ . M @ZTBL@(ZI)=ZG
+ . K G
+ . ;D EN^C0SMART(.G,ZI,"med")
+ . ;I $D(G) W !,$$output^C0XGET1("G")
+ . ;k G
+ . ;D EN^C0SMART(.G,ZI,"patient")
+ . ;I $D(G) W !,$$output^C0XGET1("G")
+ . ;K G
+ . ;D EN^C0SMART(.G,ZI,"lab")
+ . ;I $D(G) W !,$$output^C0XGET1("G")
+ . ;K G
+ . D EN^C0SMART(.G,ZI,"problem")
+ . ;I $D(G) W !,$$output^C0XGET1("G")
+ Q
+ ;
+LOADHACK ;
+ N ZI
+ F ZI=2:1:374 D ;
+ . D IMPORT^C0XF2N("hack"_ZI_".xml","/home/vista/hack/")
+ Q
+ ;
diff --git a/p/C0SUTIL.m b/p/C0SUTIL.m
index 0db93dc..f1412b9 100644
--- a/p/C0SUTIL.m
+++ b/p/C0SUTIL.m
@@ -1,34 +1,34 @@
-C0SUTIL ; GPL - Smart Processing Utilities ;2/22/12 17:05
- ;;0.1;C0S;nopatch;noreleasedate;Build 2
- ;Copyright 2012 George Lilly. Licensed under the terms of the GNU
- ;General Public License See attached copy of the License.
- ;
- ;This program is free software; you can redistribute it and/or modify
- ;it under the terms of the GNU General Public License as published by
- ;the Free Software Foundation; either version 2 of the License, or
- ;(at your option) any later version.
- ;
- ;This program is distributed in the hope that it will be useful,
- ;but WITHOUT ANY WARRANTY; without even the implied warranty of
- ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- ;GNU General Public License for more details.
- ;
- ;You should have received a copy of the GNU General Public License along
- ;with this program; if not, write to the Free Software Foundation, Inc.,
- ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
- ;
- Q
- ;
-SPDATE(ZDATE) ; extrinsic which returns the Smart date format yyyy-mm-dd
- ; ZDATE is a fileman format date
- N TMPDT
- S TMPDT=$$FMTE^XLFDT(ZDATE,"7D") ; ordered date
- S TMPDT=$TR(TMPDT,"/","-") ; change slashes to hyphens
- I TMPDT="" S TMPDT="UNKNOWN"
- N Z2,Z3
- S Z2=$P(TMPDT,"-",2)
- S Z3=$P(TMPDT,"-",3)
- I $L(Z2)=1 S $P(TMPDT,"-",2)="0"_Z2
- I $L(Z3)=1 S $P(TMPDT,"-",3)="0"_Z3
- Q TMPDT
- ;
\ No newline at end of file
+C0SUTIL ; GPL - Smart Processing Utilities ;2/22/12 17:05
+ ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
+ ;Copyright 2012 George Lilly. Licensed under the terms of the GNU
+ ;General Public License See attached copy of the License.
+ ;
+ ;This program is free software; you can redistribute it and/or modify
+ ;it under the terms of the GNU General Public License as published by
+ ;the Free Software Foundation; either version 2 of the License, or
+ ;(at your option) any later version.
+ ;
+ ;This program is distributed in the hope that it will be useful,
+ ;but WITHOUT ANY WARRANTY; without even the implied warranty of
+ ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ ;GNU General Public License for more details.
+ ;
+ ;You should have received a copy of the GNU General Public License along
+ ;with this program; if not, write to the Free Software Foundation, Inc.,
+ ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+ ;
+ Q
+ ;
+SPDATE(ZDATE) ; extrinsic which returns the Smart date format yyyy-mm-dd
+ ; ZDATE is a fileman format date
+ N TMPDT
+ S TMPDT=$$FMTE^XLFDT(ZDATE,"7D") ; ordered date
+ S TMPDT=$TR(TMPDT,"/","-") ; change slashes to hyphens
+ I TMPDT="" S TMPDT="UNKNOWN"
+ N Z2,Z3
+ S Z2=$P(TMPDT,"-",2)
+ S Z3=$P(TMPDT,"-",3)
+ I $L(Z2)=1 S $P(TMPDT,"-",2)="0"_Z2
+ I $L(Z3)=1 S $P(TMPDT,"-",3)="0"_Z3
+ Q TMPDT
+ ;
diff --git a/p/C0SXPATH.m b/p/C0SXPATH.m
index 1957ea9..b33b3be 100644
--- a/p/C0SXPATH.m
+++ b/p/C0SXPATH.m
@@ -1,5 +1,5 @@
-C0SXPATH ; CCDCCR/GPL - XPATH XML manipulation utilities; 6/1/08 ; 9/26/12 10:45am
- ;;1.0;C0S;;May 19, 2009;Build 2
+C0SXPATH ; CCDCCR/GPL - XPATH XML manipulation utilities; 6/1/08 ; 9/26/12 10:45am
+ ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
;Copyright 2008-2012 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;