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fix for lab units not found and C0STBL analysis routines

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george 2012-10-13 18:49:26 +00:00
parent b9af85c0ed
commit fd59ce2990
14 changed files with 9770 additions and 3074 deletions
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@ -1,289 +1,289 @@
C0SDEM ; GPL - Smart Demographics Processing ;2/22/12 17:05
;;0.1;C0S;nopatch;noreleasedate;Build 2
;Copyright 2012 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;
;This program is free software; you can redistribute it and/or modify
;it under the terms of the GNU General Public License as published by
;the Free Software Foundation; either version 2 of the License, or
;(at your option) any later version.
;
;This program is distributed in the hope that it will be useful,
;but WITHOUT ANY WARRANTY; without even the implied warranty of
;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;GNU General Public License for more details.
;
;You should have received a copy of the GNU General Public License along
;with this program; if not, write to the Free Software Foundation, Inc.,
;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
;
Q
;
;<?xml version="1.0" encoding="utf-8"?>
;<rdf:RDF
; xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
; xmlns:sp="http://smartplatforms.org/terms#"
; xmlns:dcterms="http://purl.org/dc/terms/"
; xmlns:v="http://www.w3.org/2006/vcard/ns#"
; xmlns:foaf="http://xmlns.com/foaf/0.1/">
; <sp:Demographics>
;
; <v:n>
; <v:Name>
; <v:given-name>Bob</v:given-name>
; <v:additional-name>J</v:additional-name>
; <v:family-name>Odenkirk</v:family-name>
; </v:Name>
; </v:n>
;
; <v:adr>
; <v:Address>
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Home" />
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Pref" />
;
; <v:street-address>15 Main St</v:street-address>
; <v:extended-address>Apt 2</v:extended-address>
; <v:locality>Wonderland</v:locality>
; <v:region>OZ</v:region>
; <v:postal-code>54321</v:postal-code>
; <v:country>USA</v:country>
; </v:Address>
; </v:adr>
;
; <v:tel>
; <v:Tel>
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Home" />
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Pref" />
; <rdf:value>800-555-1212</rdf:value>
; </v:Tel>
; </v:tel>
;
; <v:tel>
; <v:Tel>
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Cell" />
; <rdf:value>800-555-1515</rdf:value>
; </v:Tel>
; </v:tel>
;
; <foaf:gender>male</foaf:gender>
; <v:bday>1959-12-25</v:bday>
; <v:email>bob.odenkirk@example.com</v:email>
;
; <sp:medicalRecordNumber>
; <sp:Code>
; <dcterms:title>My Hospital Record 2304575</dcterms:title>
; <dcterms:identifier>2304575</dcterms:identifier>
; <sp:system>My Hospital Record</sp:system>
; </sp:Code>
; </sp:medicalRecordNumber>
;
; </sp:Demographics>
;</rdf:RDF><?xml version="1.0" encoding="utf-8"?>
;<rdf:RDF
; xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
; xmlns:sp="http://smartplatforms.org/terms#"
; xmlns:dcterms="http://purl.org/dc/terms/"
; xmlns:v="http://www.w3.org/2006/vcard/ns#"
; xmlns:foaf="http://xmlns.com/foaf/0.1/">
; <sp:Demographics>
;
; <v:n>
; <v:Name>
; <v:given-name>Bob</v:given-name>
; <v:additional-name>J</v:additional-name>
; <v:family-name>Odenkirk</v:family-name>
; </v:Name>
; </v:n>
;
; <v:adr>
; <v:Address>
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Home" />
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Pref" />
;
; <v:street-address>15 Main St</v:street-address>
; <v:extended-address>Apt 2</v:extended-address>
; <v:locality>Wonderland</v:locality>
; <v:region>OZ</v:region>
; <v:postal-code>54321</v:postal-code>
; <v:country>USA</v:country>
; </v:Address>
; </v:adr>
;
; <v:tel>
; <v:Tel>
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Home" />
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Pref" />
; <rdf:value>800-555-1212</rdf:value>
; </v:Tel>
; </v:tel>
;
; <v:tel>
; <v:Tel>
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Cell" />
; <rdf:value>800-555-1515</rdf:value>
; </v:Tel>
; </v:tel>
;
; <foaf:gender>male</foaf:gender>
; <v:bday>1959-12-25</v:bday>
; <v:email>bob.odenkirk@example.com</v:email>
;
; <sp:medicalRecordNumber>
; <sp:Code>
; <dcterms:title>My Hospital Record 2304575</dcterms:title>
; <dcterms:identifier>2304575</dcterms:identifier>
; <sp:system>My Hospital Record</sp:system>
; </sp:Code>
; </sp:medicalRecordNumber>
;
; </sp:Demographics>
;</rdf:RDF>
;G(1)="nodeID:25591^rdf:type^v:Home"
;G(2)="nodeID:25591^rdf:type^v:Pref"
;G(3)="nodeID:25591^rdf:type^v:Tel"
;G(4)="nodeID:25591^rdf:value^800-369-6403"
;G(5)="nodeID:25611^rdf:type^v:Name"
;G(6)="nodeID:25611^v:additional-name^N"
;G(7)="nodeID:25611^v:family-name^Brooks"
;G(8)="nodeID:25611^v:given-name^Brian"
;G(9)="nodeID:25622^dcterms:identifier^981968"
;G(10)="nodeID:25622^dcterms:title^My Hospital Record 981968"
;G(11)="nodeID:25622^rdf:type^sp:Code"
;G(12)="nodeID:25622^sp:system^My Hospital Record"
;G(13)="nodeID:25623^rdf:type^v:Address"
;G(14)="nodeID:25623^rdf:type^v:Home"
;G(15)="nodeID:25623^rdf:type^v:Pref"
;G(16)="nodeID:25623^v:locality^Bixby"
;G(17)="nodeID:25623^v:postal-code^74008"
;G(18)="nodeID:25623^v:region^OK"
;G(19)="nodeID:25623^v:street-address^82 Lake St"
;G(20)="smart:981968/demographics^foaf:gender^male"
;G(21)="smart:981968/demographics^rdf:type^sp:Demographics"
;G(22)="smart:981968/demographics^sp:belongsTo^smart:981968"
;G(23)="smart:981968/demographics^sp:medicalRecordNumber^nodeID:25622"
;G(24)="smart:981968/demographics^v:adr^nodeID:25623"
;G(25)="smart:981968/demographics^v:bday^1956-03-23"
;G(26)="smart:981968/demographics^v:email^brian.brooks@example.com"
;G(27)="smart:981968/demographics^v:n^nodeID:25611"
;G(28)="smart:981968/demographics^v:tel^nodeID:25591"
Q
;
PATIENT(GRTN,C0SARY) ; GRTN, passed by reference,
; is the return name of the graph created. "" if none
; C0SARY is passed in by reference and is the NHIN array of patient
;
I $O(C0SARY("patient",""))="" D Q ;
. I $D(DEBUG) W !,"No Patient array"
. S GRTN=""
S GRTN="" ; default to no patient
N C0SGRF
S C0SGRF="vistaSmart:"_ZPATID_"/patient"
S ZPAT=C0SGRF ; subject is the same as the graph name
I $D(DEBUG) W !,"Processing ",C0SGRF
D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
N FARY S FARY="C0XFARY"
D USEFARY^C0XF2N(FARY)
D VOCINIT^C0XUTIL
;
N ZPN,ZR
D STARTADD^C0XF2N
;
; First do the base demographic graph
;
S ZPN=$NA(C0SARY("patient",1)) ; name of predicate array for this patient
N SEX S SEX=$G(@ZPN@("gender@value"))
I SEX="M" S SEX="male"
I SEX="F" S SEX="female"
S ZR("foaf:gender")=SEX
S ZR("rdf:type")="sp:Demographics"
S ZR("sp:belongsTo")=ZPAT
N PATIENT
S PATIENT=$P(ZPAT,"#",2)
I $D(DEBUG) W !,"PROCESSING PATIENT ",PATIENT
N NMREC S NMREC=$$ANONS^C0XF2N ; new anonomous subject for med rec graph
S ZR("sp:medicalRecordNumber")=NMREC
N NVADR S NVADR=$$ANONS^C0XF2N ; for address
S ZR("v:adr")=NVADR
N NNAME S NNAME=$$ANONS^C0XF2N ; for name
S ZR("v:n")=NNAME
N NTEL S NTEL=$$ANONS^C0XF2N ; for telephone
I $D(@ZPN@("telecomList.telecom@value")) S ZR("v:tel")=NTEL ; only if exists
N BDATE
S ZX=""
S ZX=$G(@ZPN@("dob@value")) ; date of birth in fileman format
S BDATE=$$FMTE^XLFDT(ZX,"7D") ; ordered date
S BDATE=$TR(BDATE,"/","-") ; change slashes to hyphens
I BDATE="" S BDATE="UNKNOWN"
N Z2,Z3
S Z2=$P(BDATE,"-",2)
S Z3=$P(BDATE,"-",3)
I $L(Z2)=1 S $P(BDATE,"-",2)="0"_Z2
I $L(Z3)=1 S $P(BDATE,"-",3)="0"_Z3
S ZR("v:bday")=BDATE
I $D(C0SVISTA) D ;
. S ZR("vista:SSN")=$G(@ZPN@("ssn@value")) ; SSN
. S ZR("vista:DFN")=$G(@ZPN@("id@value")) ; DFN
D ADDINN^C0XF2N(C0SGRF,ZPAT,.ZR) ; create base graph
K ZR
;
; create address sub-graph
;
S ZR("rdf:type")="v:Address"
S ZR("rdf:type")="v:Home"
S ZR("v:locality")=$G(@ZPN@("address@city"))
S ZR("v:postal-code")=$G(@ZPN@("address@postalCode"))
S ZR("v:region")=$G(@ZPN@("address@stateProvince"))
S ZR("v:street-address")=$G(@ZPN@("address@streetLine1"))
D ADDINN^C0XF2N(C0SGRF,NVADR,.ZR) ; create the vcard address
K ZR
;
; create medical record subgraph
;
S ZR("dcterms:identifier")=$G(@ZPN@("id@value"))
S ZR("dcterms:title")="VistA Patient Record "_ZR("dcterms:identifier")
S ZR("rdf:type")="sp:Code"
S ZR("sp:system")="VistA Patient Record"
D ADDINN^C0XF2N(C0SGRF,NMREC,.ZR) ; create medical record graph
K ZR
;
; create name subgraph
;
N ZNF,ZNL,ZNM,ZNAM
S ZR("rdf:type")="v:Name"
S ZX=$G(@ZPN@("givenNames@value")) ; first name and middle names
S ZNF=$P(ZX," ",1) ; first name is first piece
S ZNM=$P(ZX," ",2) ; middle names are the rest
S ZR("v:additional-name")=ZNM
S ZR("v:family-name")=$G(@ZPN@("familyName@value"))
S ZR("v:given-name")=ZNF
D ADDINN^C0XF2N(C0SGRF,NNAME,.ZR) ; insert name graph
K ZR
;
; create telephone subgraph
;
D ;
. S ZR("rdf:value")=$G(@ZPN@("telecomList.telecom@value"))
. I ZR("rdf:value")="" Q ; telephone number missing, no subgraph
. S ZR("rdf:type")="v:Tel"
. D ADDINN^C0XF2N(C0SGRF,NTEL,.ZR)
K ZR
;
; load the demographics graph and all sub graphs to the triple store
;
D BULKLOAD^C0XF2N(.C0XFDA)
S GRTN=C0SGRF
Q
;
AGES ; LIST ALL PATIENTS AND THEIR AGES
N ZI S ZI=0
F S ZI=$O(^DPT(ZI)) Q:+ZI=0 D ; FOR EVERY PATIENT
. N ZDOB
. S ZDOB=$$GET1^DIQ(2,ZI_",","DOB","I") ; FILEMAN DOB
. N ZNAME
. S ZNAME=$P(^DPT(ZI,0),U)
. N ZSEX
. S ZSEX=$$GET1^DIQ(2,ZI_",","SEX")
. W !,"DFN:",ZI," ",ZNAME," AGE: ",+$$BRIEF^VWTIME(ZDOB)," YEAR OLD ",ZSEX
Q
;
C0SDEM ; GPL - Smart Demographics Processing ;2/22/12 17:05
;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 4
;Copyright 2012 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;
;This program is free software; you can redistribute it and/or modify
;it under the terms of the GNU General Public License as published by
;the Free Software Foundation; either version 2 of the License, or
;(at your option) any later version.
;
;This program is distributed in the hope that it will be useful,
;but WITHOUT ANY WARRANTY; without even the implied warranty of
;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;GNU General Public License for more details.
;
;You should have received a copy of the GNU General Public License along
;with this program; if not, write to the Free Software Foundation, Inc.,
;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
;
Q
;
;<?xml version="1.0" encoding="utf-8"?>
;<rdf:RDF
; xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
; xmlns:sp="http://smartplatforms.org/terms#"
; xmlns:dcterms="http://purl.org/dc/terms/"
; xmlns:v="http://www.w3.org/2006/vcard/ns#"
; xmlns:foaf="http://xmlns.com/foaf/0.1/">
; <sp:Demographics>
;
; <v:n>
; <v:Name>
; <v:given-name>Bob</v:given-name>
; <v:additional-name>J</v:additional-name>
; <v:family-name>Odenkirk</v:family-name>
; </v:Name>
; </v:n>
;
; <v:adr>
; <v:Address>
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Home" />
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Pref" />
;
; <v:street-address>15 Main St</v:street-address>
; <v:extended-address>Apt 2</v:extended-address>
; <v:locality>Wonderland</v:locality>
; <v:region>OZ</v:region>
; <v:postal-code>54321</v:postal-code>
; <v:country>USA</v:country>
; </v:Address>
; </v:adr>
;
; <v:tel>
; <v:Tel>
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Home" />
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Pref" />
; <rdf:value>800-555-1212</rdf:value>
; </v:Tel>
; </v:tel>
;
; <v:tel>
; <v:Tel>
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Cell" />
; <rdf:value>800-555-1515</rdf:value>
; </v:Tel>
; </v:tel>
;
; <foaf:gender>male</foaf:gender>
; <v:bday>1959-12-25</v:bday>
; <v:email>bob.odenkirk@example.com</v:email>
;
; <sp:medicalRecordNumber>
; <sp:Code>
; <dcterms:title>My Hospital Record 2304575</dcterms:title>
; <dcterms:identifier>2304575</dcterms:identifier>
; <sp:system>My Hospital Record</sp:system>
; </sp:Code>
; </sp:medicalRecordNumber>
;
; </sp:Demographics>
;</rdf:RDF><?xml version="1.0" encoding="utf-8"?>
;<rdf:RDF
; xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
; xmlns:sp="http://smartplatforms.org/terms#"
; xmlns:dcterms="http://purl.org/dc/terms/"
; xmlns:v="http://www.w3.org/2006/vcard/ns#"
; xmlns:foaf="http://xmlns.com/foaf/0.1/">
; <sp:Demographics>
;
; <v:n>
; <v:Name>
; <v:given-name>Bob</v:given-name>
; <v:additional-name>J</v:additional-name>
; <v:family-name>Odenkirk</v:family-name>
; </v:Name>
; </v:n>
;
; <v:adr>
; <v:Address>
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Home" />
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Pref" />
;
; <v:street-address>15 Main St</v:street-address>
; <v:extended-address>Apt 2</v:extended-address>
; <v:locality>Wonderland</v:locality>
; <v:region>OZ</v:region>
; <v:postal-code>54321</v:postal-code>
; <v:country>USA</v:country>
; </v:Address>
; </v:adr>
;
; <v:tel>
; <v:Tel>
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Home" />
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Pref" />
; <rdf:value>800-555-1212</rdf:value>
; </v:Tel>
; </v:tel>
;
; <v:tel>
; <v:Tel>
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Cell" />
; <rdf:value>800-555-1515</rdf:value>
; </v:Tel>
; </v:tel>
;
; <foaf:gender>male</foaf:gender>
; <v:bday>1959-12-25</v:bday>
; <v:email>bob.odenkirk@example.com</v:email>
;
; <sp:medicalRecordNumber>
; <sp:Code>
; <dcterms:title>My Hospital Record 2304575</dcterms:title>
; <dcterms:identifier>2304575</dcterms:identifier>
; <sp:system>My Hospital Record</sp:system>
; </sp:Code>
; </sp:medicalRecordNumber>
;
; </sp:Demographics>
;</rdf:RDF>
;G(1)="nodeID:25591^rdf:type^v:Home"
;G(2)="nodeID:25591^rdf:type^v:Pref"
;G(3)="nodeID:25591^rdf:type^v:Tel"
;G(4)="nodeID:25591^rdf:value^800-369-6403"
;G(5)="nodeID:25611^rdf:type^v:Name"
;G(6)="nodeID:25611^v:additional-name^N"
;G(7)="nodeID:25611^v:family-name^Brooks"
;G(8)="nodeID:25611^v:given-name^Brian"
;G(9)="nodeID:25622^dcterms:identifier^981968"
;G(10)="nodeID:25622^dcterms:title^My Hospital Record 981968"
;G(11)="nodeID:25622^rdf:type^sp:Code"
;G(12)="nodeID:25622^sp:system^My Hospital Record"
;G(13)="nodeID:25623^rdf:type^v:Address"
;G(14)="nodeID:25623^rdf:type^v:Home"
;G(15)="nodeID:25623^rdf:type^v:Pref"
;G(16)="nodeID:25623^v:locality^Bixby"
;G(17)="nodeID:25623^v:postal-code^74008"
;G(18)="nodeID:25623^v:region^OK"
;G(19)="nodeID:25623^v:street-address^82 Lake St"
;G(20)="smart:981968/demographics^foaf:gender^male"
;G(21)="smart:981968/demographics^rdf:type^sp:Demographics"
;G(22)="smart:981968/demographics^sp:belongsTo^smart:981968"
;G(23)="smart:981968/demographics^sp:medicalRecordNumber^nodeID:25622"
;G(24)="smart:981968/demographics^v:adr^nodeID:25623"
;G(25)="smart:981968/demographics^v:bday^1956-03-23"
;G(26)="smart:981968/demographics^v:email^brian.brooks@example.com"
;G(27)="smart:981968/demographics^v:n^nodeID:25611"
;G(28)="smart:981968/demographics^v:tel^nodeID:25591"
Q
;
PATIENT(GRTN,C0SARY) ; GRTN, passed by reference,
; is the return name of the graph created. "" if none
; C0SARY is passed in by reference and is the NHIN array of patient
;
I $O(C0SARY("patient",""))="" D Q ;
. I $D(DEBUG) W !,"No Patient array"
. S GRTN=""
S GRTN="" ; default to no patient
N C0SGRF
S C0SGRF="vistaSmart:"_ZPATID_"/patient"
S ZPAT=C0SGRF ; subject is the same as the graph name
I $D(DEBUG) W !,"Processing ",C0SGRF
D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
N FARY S FARY="C0XFARY"
D USEFARY^C0XF2N(FARY)
D VOCINIT^C0XUTIL
;
N ZPN,ZR
D STARTADD^C0XF2N
;
; First do the base demographic graph
;
S ZPN=$NA(C0SARY("patient",1)) ; name of predicate array for this patient
N SEX S SEX=$G(@ZPN@("gender@value"))
I SEX="M" S SEX="male"
I SEX="F" S SEX="female"
S ZR("foaf:gender")=SEX
S ZR("rdf:type")="sp:Demographics"
S ZR("sp:belongsTo")=ZPAT
N PATIENT
S PATIENT=$P(ZPAT,"#",2)
I $D(DEBUG) W !,"PROCESSING PATIENT ",PATIENT
N NMREC S NMREC=$$ANONS^C0XF2N ; new anonomous subject for med rec graph
S ZR("sp:medicalRecordNumber")=NMREC
N NVADR S NVADR=$$ANONS^C0XF2N ; for address
S ZR("v:adr")=NVADR
N NNAME S NNAME=$$ANONS^C0XF2N ; for name
S ZR("v:n")=NNAME
N NTEL S NTEL=$$ANONS^C0XF2N ; for telephone
I $D(@ZPN@("telecomList.telecom@value")) S ZR("v:tel")=NTEL ; only if exists
N BDATE
S ZX=""
S ZX=$G(@ZPN@("dob@value")) ; date of birth in fileman format
S BDATE=$$FMTE^XLFDT(ZX,"7D") ; ordered date
S BDATE=$TR(BDATE,"/","-") ; change slashes to hyphens
I BDATE="" S BDATE="UNKNOWN"
N Z2,Z3
S Z2=$P(BDATE,"-",2)
S Z3=$P(BDATE,"-",3)
I $L(Z2)=1 S $P(BDATE,"-",2)="0"_Z2
I $L(Z3)=1 S $P(BDATE,"-",3)="0"_Z3
S ZR("v:bday")=BDATE
I $D(C0SVISTA) D ;
. S ZR("vista:SSN")=$G(@ZPN@("ssn@value")) ; SSN
. S ZR("vista:DFN")=$G(@ZPN@("id@value")) ; DFN
D ADDINN^C0XF2N(C0SGRF,ZPAT,.ZR) ; create base graph
K ZR
;
; create address sub-graph
;
S ZR("rdf:type")="v:Address"
S ZR("rdf:type")="v:Home"
S ZR("v:locality")=$G(@ZPN@("address@city"))
S ZR("v:postal-code")=$G(@ZPN@("address@postalCode"))
S ZR("v:region")=$G(@ZPN@("address@stateProvince"))
S ZR("v:street-address")=$G(@ZPN@("address@streetLine1"))
D ADDINN^C0XF2N(C0SGRF,NVADR,.ZR) ; create the vcard address
K ZR
;
; create medical record subgraph
;
S ZR("dcterms:identifier")=$G(@ZPN@("id@value"))
S ZR("dcterms:title")="VistA Patient Record "_ZR("dcterms:identifier")
S ZR("rdf:type")="sp:Code"
S ZR("sp:system")="VistA Patient Record"
D ADDINN^C0XF2N(C0SGRF,NMREC,.ZR) ; create medical record graph
K ZR
;
; create name subgraph
;
N ZNF,ZNL,ZNM,ZNAM
S ZR("rdf:type")="v:Name"
S ZX=$G(@ZPN@("givenNames@value")) ; first name and middle names
S ZNF=$P(ZX," ",1) ; first name is first piece
S ZNM=$P(ZX," ",2) ; middle names are the rest
S ZR("v:additional-name")=ZNM
S ZR("v:family-name")=$G(@ZPN@("familyName@value"))
S ZR("v:given-name")=ZNF
D ADDINN^C0XF2N(C0SGRF,NNAME,.ZR) ; insert name graph
K ZR
;
; create telephone subgraph
;
D ;
. S ZR("rdf:value")=$G(@ZPN@("telecomList.telecom@value"))
. I ZR("rdf:value")="" Q ; telephone number missing, no subgraph
. S ZR("rdf:type")="v:Tel"
. D ADDINN^C0XF2N(C0SGRF,NTEL,.ZR)
K ZR
;
; load the demographics graph and all sub graphs to the triple store
;
D BULKLOAD^C0XF2N(.C0XFDA)
S GRTN=C0SGRF
Q
;
AGES ; LIST ALL PATIENTS AND THEIR AGES
N ZI S ZI=0
F S ZI=$O(^DPT(ZI)) Q:+ZI=0 D ; FOR EVERY PATIENT
. N ZDOB
. S ZDOB=$$GET1^DIQ(2,ZI_",","DOB","I") ; FILEMAN DOB
. N ZNAME
. S ZNAME=$P(^DPT(ZI,0),U)
. N ZSEX
. S ZSEX=$$GET1^DIQ(2,ZI_",","SEX")
. W !,"DFN:",ZI," ",ZNAME," AGE: ",+$$BRIEF^VWTIME(ZDOB)," YEAR OLD ",ZSEX
Q
;

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@ -1,320 +1,320 @@
C0SDOM ; GPL - Smart Container - DOM PROCESSING ROUTINES ;6/6/11 17:05
;;0.1;C0S;nopatch;noreleasedate;Build 2
;Copyright 2011,2012 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;
;This program is free software; you can redistribute it and/or modify
;it under the terms of the GNU General Public License as published by
;the Free Software Foundation; either version 2 of the License, or
;(at your option) any later version.
;
;This program is distributed in the hope that it will be useful,
;but WITHOUT ANY WARRANTY; without even the implied warranty of
;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;GNU General Public License for more details.
;
;You should have received a copy of the GNU General Public License along
;with this program; if not, write to the Free Software Foundation, Inc.,
;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
;
Q
;
DOMO(ZOID,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; RECURSIVE ROUTINE TO POPULATE
; THE XPATH INDEX ZXIDX, PASSED BY NAME
; THE XPATH ARRAY XPARY, PASSED BY NAME
; ZOID IS THE STARTING OID
; ZPATH IS THE STARTING XPATH, USUALLY "/"
; ZNUM IS THE MULTIPLE NUMBER [x], USUALLY NULL WHEN ON THE TOP NODE
; ZREDUX IS THE XPATH REDUCTION STRING, TAKEN OUT OF EACH XPATH IF PRESENT
I $G(ZREDUX)="" S ZREDUX=""
N NEWPATH,NARY ; NEWPATH IS AN XPATH NARY IS AN NHIN MUMPS ARRAY
N NEWNUM S NEWNUM=""
I $G(ZNUM)>0 S NEWNUM="["_ZNUM_"]"
S NEWPATH=ZPATH_"/"_$$TAG(ZOID)_NEWNUM ; CREATE THE XPATH FOR THIS NODE
I $G(ZREDUX)'="" D ; REDUX PROVIDED?
. N GT S GT=$P(NEWPATH,ZREDUX,2)
. I GT'="" S NEWPATH=GT
S @ZXIDX@(NEWPATH)=ZOID ; ADD THE XPATH FOR THIS NODE TO THE XPATH INDEX
N GA D ATT("GA",ZOID) ; GET ATTRIBUTES FOR THIS NODE
I $D(GA) D ; PROCESS THE ATTRIBUTES
. N ZI S ZI=""
. F S ZI=$O(GA(ZI)) Q:ZI="" D ; FOR EACH ATTRIBUTE
. . N ZP S ZP=NEWPATH_"@"_ZI ; PATH FOR ATTRIBUTE
. . S @ZXPARY@(ZP)=GA(ZI) ; ADD THE ATTRIBUTE XPATH TO THE XP ARRAY
. . I GA(ZI)'="" D ADDNARY(ZP,GA(ZI)) ; ADD THE NHIN ARRAY VALUE
N GD D DATA("GD",ZOID) ; SEE IF THERE IS DATA FOR THIS NODE
I $D(GD(2)) D ;
. M @ZXPARY@(NEWPATH)=GD ; IF MULITPLE DATA MERGE TO THE ARRAY
E I $D(GD(1)) D ;
. S @ZXPARY@(NEWPATH)=GD(1) ; IF SINGLE VALUE, ADD TO ARRAY
. I GD(1)'="" D ADDNARY(NEWPATH,GD(1)) ; ADD TO NHIN ARRAY
N ZFRST S ZFRST=$$FIRST(ZOID) ; SET FIRST CHILD
I ZFRST'=0 D ; THERE IS A CHILD
. N ZNUM
. N ZMULT S ZMULT=$$ISMULT(ZFRST) ; IS FIRST CHILD A MULTIPLE
. D DOMO(ZFRST,NEWPATH,ZNARY,ZXIDX,ZXPARY,$S(ZMULT:1,1:""),ZREDUX) ; THE CHILD
N GNXT S GNXT=$$NXTSIB(ZOID)
I $$TAG(GNXT)'=$$TAG(ZOID) S ZNUM="" ; RESET COUNTING AFTER MULTIPLES
I GNXT'=0 D ;
. N ZMULT S ZMULT=$$ISMULT(GNXT) ; IS THE SIBLING A MULTIPLE?
. I (ZNUM="")&(ZMULT) D ; SIBLING IS FIRST OF MULTIPLES
. . N ZNUM S ZNUM=1 ;
. . D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; DO NEXT SIB
. E D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,$S(ZNUM>0:ZNUM+1,1:""),ZREDUX) ; SIB
Q
;
ADDNARY(ZXP,ZVALUE) ; ADD AN NHIN ARRAY VALUE TO ZNARY
;
; IF ZATT=1 THE ARRAY IS ADDED AS ATTRIBUTES
;
N ZZI,ZZJ,ZZN
S ZZI=$P(ZXP,"/",1) ; FIRST PIECE OF XPATH ARRAY
I ZZI="" Q ; DON'T ADD THIS ONE .. PROBABLY THE //results NODE
S ZZJ=$P(ZXP,ZZI_"/",2) ; REST OF XPATH ARRAY
S ZZJ=$TR(ZZJ,"/",".") ; REPLACE / WITH .
I ZZI'["]" D ; A SINGLETON
. S ZZN=1
E D ; THERE IS AN [x] OCCURANCE
. S ZZN=$P($P(ZZI,"[",2),"]",1) ; PULL OUT THE OCCURANCE
. S ZZI=$P(ZZI,"[",1) ; TAKE OUT THE [X]
I ZZJ'="" D ; TIME TO ADD THE VALUE
. S @ZNARY@(ZZI,ZZN,ZZJ)=ZVALUE
Q
;
PARSE(INXML,INDOC) ;CALL THE MXML PARSER ON INXML, PASSED BY NAME
; INDOC IS PASSED AS THE DOCUMENT NAME - DON'T KNOW WHERE TO STORE THIS NOW
; EXTRINSIC WHICH RETURNS THE DOCID ASSIGNED BY MXML
;Q $$EN^MXMLDOM(INXML)
Q $$EN^MXMLDOM(INXML,"W")
;
ISMULT(ZOID) ; RETURN TRUE IF ZOID IS ONE OF A MULTIPLE
N ZN
;I $$TAG(ZOID)["entry" B
S ZN=$$NXTSIB(ZOID)
I ZN'="" Q $$TAG(ZOID)=$$TAG(ZN) ; IF TAG IS THE SAME AS NEXT SIB TAG
Q 0
;
FIRST(ZOID) ;RETURNS THE OID OF THE FIRST CHILD OF ZOID
Q $$CHILD^MXMLDOM(C0SDOCID,ZOID)
;
PARENT(ZOID) ;RETURNS THE OID OF THE PARENT OF ZOID
Q $$PARENT^MXMLDOM(C0SDOCID,ZOID)
;
ATT(RTN,NODE) ;GET ATTRIBUTES FOR ZOID
S HANDLE=C0SDOCID
K @RTN
D GETTXT^MXMLDOM("A")
Q
;
TAG(ZOID) ; RETURNS THE XML TAG FOR THE NODE
;I ZOID=149 B ;GPLTEST
N X,Y
S Y=""
S X=$G(C0SCBK("TAG")) ;IS THERE A CALLBACK FOR THIS ROUTINE
I X'="" X X ; EXECUTE THE CALLBACK, SHOULD SET Y
I Y="" S Y=$$NAME^MXMLDOM(C0SDOCID,ZOID)
Q Y
;
NXTSIB(ZOID) ; RETURNS THE NEXT SIBLING
Q $$SIBLING^MXMLDOM(C0SDOCID,ZOID)
;
DATA(ZT,ZOID) ; RETURNS DATA FOR THE NODE
;N ZT,ZN S ZT=""
;S C0SDOM=$NA(^TMP("MXMLDOM",$J,C0SDOCID))
;Q $G(@C0SDOM@(ZOID,"T",1))
S ZN=$$TEXT^MXMLDOM(C0SDOCID,ZOID,ZT)
Q
;
OUTXML(ZRTN,INID,NO1ST) ; USES C0SMXMLB (MXMLBLD) TO OUTPUT XML FROM AN MXMLDOM
;
S C0SDOCID=INID
I '$D(NO1ST) S NO1ST=0 ; DO NOT SURPRESS THE <?xml tag generation
D START^C0SMXMLB($$TAG(1),,"G",NO1ST)
D NDOUT($$FIRST(1))
D END^C0SMXMLB ;END THE DOCUMENT
M @ZRTN=^TMP("MXMLBLD",$J)
K ^TMP("MXMLBLD",$J)
Q
;
NDOUT(ZOID) ;CALLBACK ROUTINE - IT IS RECURSIVE
N ZI S ZI=$$FIRST(ZOID)
I ZI'=0 D ; THERE IS A CHILD
. N ZATT D ATT("ZATT",ZOID) ; THESE ARE THE ATTRIBUTES MOVED TO ZATT
. D MULTI^C0SMXMLB("",$$TAG(ZOID),.ZATT,"NDOUT^C0SMXML(ZI)") ;HAVE CHILDREN
E D ; NO CHILD - IF NO CHILDREN, A NODE HAS DATA, IS AN ENDPOINT
. ;W "DOING",ZOID,!
. N ZD D DATA("ZD",ZOID) ;NODES WITHOUT CHILDREN HAVE DATA
. N ZATT D ATT("ZATT",ZOID) ;ATTRIBUTES
. D ITEM^C0SMXMLB("",$$TAG(ZOID),.ZATT,$G(ZD(1))) ;NO CHILDREN
I $$NXTSIB(ZOID)'=0 D ; THERE IS A SIBLING
. D NDOUT($$NXTSIB(ZOID)) ;RECURSE FOR SIBLINGS
Q
;
WNHIN(ZDFN) ; WRITES THE XML OUTPUT OF GET^NHINV TO AN XML FILE
;
N GN,GN2
D GET^NHINV(.GN,ZDFN) ; EXTRACT THE XML
S GN2=$NA(@GN@(1))
W $$OUTPUT^C0SXPATH(GN2,"nhin_"_ZDFN_".xml","/home/wvehr3-09/")
Q
;
NARY2XML(ZGOUT,ZGIN) ; CREATE XML FROM AN NHIN ARRAY
; ZGOUT AND ZGIN ARE PASSED BY NAME
N C0SDOCID
W !,ZGOUT," ",ZGIN
S C0SDOCID=$$DOMI(ZGIN) ; PUT IT INTO THE DOM
D OUTXML(ZGOUT,C0SDOCID)
Q
;
; EXAMPLE OF NHIN ARRAY FORMAT - THIS IS AN OUTPUT OF DOMO ABOVE WHEN RUN
; AGAINST THE OUTPUT OF THE GET^NHINV ROUTINE. (THIS IS NOT REAL PATIENT DATA)
;
;GNARY("med",1,"doses.dose@dose")=10
;GNARY("med",1,"doses.dose@noun")="TABLET"
;GNARY("med",1,"doses.dose@route")="PO"
;GNARY("med",1,"doses.dose@schedule")="QD"
;GNARY("med",1,"doses.dose@units")="MG"
;GNARY("med",1,"doses.dose@unitsPerDose")=1
;GNARY("med",1,"facility@code")=100
;GNARY("med",1,"facility@name")="VOE OFFICE INSTITUTION"
;GNARY("med",1,"form@value")="TAB"
;GNARY("med",1,"id@value")="1N;O"
;GNARY("med",1,"location@code")=5
;GNARY("med",1,"location@name")="3 WEST"
;GNARY("med",1,"name@value")="LISINOPRIL TAB"
;GNARY("med",1,"orderID@value")=294
;GNARY("med",1,"ordered@value")=3110531.001233
;GNARY("med",1,"orderingProvider@code")=63
;GNARY("med",1,"orderingProvider@name")="KING,MATTHEW MICHAEL"
;GNARY("med",1,"products.product.class@code")="ACE INHIBITORS"
;GNARY("med",1,"products.product.vaGeneric@code")=1990
;GNARY("med",1,"products.product.vaGeneric@name")="LISINOPRIL"
;GNARY("med",1,"products.product.vaGeneric@vuid")=4019380
;GNARY("med",1,"products.product.vaProduct@code")=8118
;GNARY("med",1,"products.product.vaProduct@name")="LISINOPRIL 10MG TAB"
;GNARY("med",1,"products.product.vaProduct@vuid")=4008593
;GNARY("med",1,"products.product@code")=6174
;GNARY("med",1,"products.product@name")="LISINOPRIL 10MG U/D"
;GNARY("med",1,"products.product@role")="D"
;GNARY("med",1,"sig")="10MG BY MOUTH EVERY DAY"
;GNARY("med",1,"sig@xml:space")="preserve"
;GNARY("med",1,"status@value")="active"
;GNARY("med",1,"type@value")="OTC"
;GNARY("med",1,"vaType@value")="N"
;
; DOMI is an extrinsic to insert NHIN ARRAY FORMAT arrays into the DOM
; it returns 0 or 1 based on success.
;
; INARY is passed by name and has the format shown above
; HANDLE is the document number in the DOM (both MXML and EWD DOMs will
; be supported eventually - initial implementation is for MXML
;
; PARENT is the node id or tag of the parent under which the DOM will
; be populated. If it is numeric, it is a node. If it is a string, the DOM
; will be searched to find the tag. If not found and there is no root,
; it will be inserted as the root. If not found and there is a root, it
; will be inserted under the root.
;
; For the above example the call would be OK=$$DOMI("GNARY",0,"results")
; because "results" is the root tag. Use OUTXML to render the xml from
; the DOM.
;
DOMI(INARY,HANDLE,PARENT) ; EXTRINSIC TO INSERT NHIN ARRAYS TO A DOM
;
N ZPARNODE
S (SUCCESS,LEVEL,LEVEL(0),NODE)=0
I '$D(INARY) Q 0 ; NO ARRAY PASSED
I '$D(HANDLE) S HANDLE=$$NEWDOM() ; MAKE A NEW DOM
;I PARENT="" S PARENT="root"
I +$G(PARENT)>0 S ZPARNODE=PARENT ; WE HAVE BEEN PASSED A PARENT NODE ID
E I $L($G(PARENT))>0 D ; TBD FIND THE PARENT IN THE DOM AND SET LEVEL
. D STARTELE^MXMLDOM(PARENT) ; INSERT THE PARENT NODE
. S ZPARNODE=1 ;
; WE NOW HAVE A HANDLE AND A PARENT NODE AND LEVEL HAS BEEN SET
N ZEXARY
D EXPAND("ZEXARY",INARY) ; EXPAND THE NHIN ARRAY
D MAJOR("ZEXARY") ; PROCESS ALL THE NODES TO BE ADDED
I $L($G(PARENT))>0 D ENDELE^MXMLDOM(PARENT) ; CLOSE OUT THE PARENT NODE
Q HANDLE ; SUCCESS
;
MAJOR(ZARY) ; RECURSIVE ROUTINE FOR INTERMEDIATE NODES
N ZI S ZI=""
N ZTAG
F S ZI=$O(@ZARY@(ZI)) Q:ZI="" D ; FOR EACH SECTION
. N ZELEADD S ZELEADD=0
. I ZI["@" D ; END NODE HAS NO VALUE, ONLY ATTRIBUTES
. . S ZTAG=$P(ZI,"@",1) ; PULL OUT THE TAG
. . K ZATT ; CLEAR OUT LAST ONE
. . M ZATT=@ZARY@(ZI,1) ; GET ATTRIBUTE ARRAY
. . D STARTELE^MXMLDOM(ZTAG,.ZATT) ; ADD THE NODE
. . S ZELEADD=1 ; FLAG TO NOT ADD THE ELEMENT TWICE
. I $O(@ZARY@(ZI,""))="" D ;END NODE
. . S ZTAG=ZI ; USE ZI FOR THE TAG
. . I 'ZELEADD D STARTELE^MXMLDOM(ZTAG) ; ADD ELEMENT IF NOT THERE
. . S ZELEADD=1 ; ADDED AN ELEMENT
. . D CHAR^MXMLDOM($G(@ZARY@(ZI))) ; INSERT THE VALUE
. I ZELEADD D Q ; NO MORE TO DO ON THIS LEVEL
. . D ENDELE^MXMLDOM(ZTAG) ; CLOSE THE ELEMENT BEFORE LEAVING
. N NEWARY ; INDENTED ARRAY
. N ZN S ZN=0
. F S ZN=$O(@ZARY@(ZI,ZN)) Q:ZN="" D ; FOR EACH MULTIPLE
. . D STARTELE^MXMLDOM(ZI) ; ADD THE INTERMEDIATE TAG
. . S NEWARY=$NA(@ZARY@(ZI,ZN)) ; INDENT THE ARRAY
. . D MAJOR(NEWARY) ; RECURSE FOR INDENTED ARRAY
. . D ENDELE^MXMLDOM(ZI) ; END THE INTERMEDIATE TAG
Q
;
EXPAND(ZZOUT,ZZIN) ; EXPANDS NHIN ARRAY FORMAT TO AN EXPANDED
; CONSISTENT FORMAT
; GNARY("patient",1,"facilities[2].facility@code")="050"
; becomes G2ARY("patient",1,"facilities",2,"facility@",1,"code")="050"
; for easier processing (this is fileman format genius)
; basically removes the dot notation from the strings
;
N ZZI
S ZZI=""
F S ZZI=$O(@ZZIN@(ZZI)) Q:ZZI="" D ;
. N ZZN S ZZN=0
. F S ZZN=$O(@ZZIN@(ZZI,ZZN)) Q:ZZN="" D ;
. . N ZZS S ZZS=""
. . N GA ;PUSH STACK
. . F S ZZS=$O(@ZZIN@(ZZI,ZZN,ZZS)) Q:ZZS="" D ;
. . . K GA ; NEW STACK
. . . D PUSH^C0SXPATH("GA",ZZI_"^"_ZZN) ; PUSH PARENT
. . . N ZZV ; PLACE TO STASH THE VALUE
. . . S ZZV=@ZZIN@(ZZI,ZZN,ZZS) ; VALUE
. . . W !,"VALUE:",ZZV
. . . N GK ; COUNTER
. . . F GK=1:1:$L(ZZS,".") D ; FOR EACH INTERMEDIATE NODE
. . . . N ZZN2 S ZZN2=1 ; DEFAULT IF NO [X]
. . . . N GM S GM=$P(ZZS,".",GK) ; TAG
. . . . I GM["[" D ; IT'S A MULTIPLE
. . . . . S ZZN2=$P($P(GM,"[",2),"]",1) ; PULL OUT THE NUMBER
. . . . . S GM=$P(GM,"[",1) ; PULL OUT THE TAG
. . . . I GM["@" D ; IT'S GOT ATTRIBUTES
. . . . . N GM2 S GM2=$P(GM,"@",2) ; PULLOUT THE ATTRIBUTE NAME
. . . . . D PUSH^C0SXPATH("GA",$P(GM,"@",1)_"@"_"^"_ZZN2) ; PUSH THE TAG
. . . . . D PUSH^C0SXPATH("GA",GM2_"^"_ZZN2)
. . . . E D PUSH^C0SXPATH("GA",GM_"^"_ZZN2) ;
. . . S GA(GA(0))=$P(GA(GA(0)),"^",1)_"^" ; GET RID OF THE LAST "1"
. . . N GZI S GZI="" ; STRING FOR THE INDEX
. . . F GK=1:1:GA(0) D ; TIME TO REVERSE POP THE TAGS
. . . . S GM=$P(GA(GK),"^",1) ; THE TAG
. . . . S ZZN2=$P(GA(GK),"^",2) ; THE NUMBER IF ANY
. . . . I ZZN2="" S GZI=GZI_""""_GM_"""" ; FOR THE LAST ONE
. . . . E S GZI=GZI_""""_GM_""""_","_ZZN2_"," ; FOR THE REST
. . . S GZI2=ZZOUT_"("_GZI_")" ; INCLUDE THE ARRAY NAME
. . . W !,GZI
. . . S @GZI2=ZZV ; REMEMBER THE VALUE?
Q
;
NEWDOM() ; extrinsic which creates a new DOM and returns the HANDLE
N CBK,SUCCESS,LEVEL,NODE,HANDLE
K ^TMP("MXMLERR",$J)
L +^TMP("MXMLDOM",$J):5
E Q 0
S HANDLE=$O(^TMP("MXMLDOM",$J,""),-1)+1,^(HANDLE)=""
L -^TMP("MXMLDOM",$J)
Q HANDLE
;
C0SDOM ; GPL - Smart Container - DOM PROCESSING ROUTINES ;6/6/11 17:05
;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 4
;Copyright 2011,2012 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;
;This program is free software; you can redistribute it and/or modify
;it under the terms of the GNU General Public License as published by
;the Free Software Foundation; either version 2 of the License, or
;(at your option) any later version.
;
;This program is distributed in the hope that it will be useful,
;but WITHOUT ANY WARRANTY; without even the implied warranty of
;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;GNU General Public License for more details.
;
;You should have received a copy of the GNU General Public License along
;with this program; if not, write to the Free Software Foundation, Inc.,
;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
;
Q
;
DOMO(ZOID,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; RECURSIVE ROUTINE TO POPULATE
; THE XPATH INDEX ZXIDX, PASSED BY NAME
; THE XPATH ARRAY XPARY, PASSED BY NAME
; ZOID IS THE STARTING OID
; ZPATH IS THE STARTING XPATH, USUALLY "/"
; ZNUM IS THE MULTIPLE NUMBER [x], USUALLY NULL WHEN ON THE TOP NODE
; ZREDUX IS THE XPATH REDUCTION STRING, TAKEN OUT OF EACH XPATH IF PRESENT
I $G(ZREDUX)="" S ZREDUX=""
N NEWPATH,NARY ; NEWPATH IS AN XPATH NARY IS AN NHIN MUMPS ARRAY
N NEWNUM S NEWNUM=""
I $G(ZNUM)>0 S NEWNUM="["_ZNUM_"]"
S NEWPATH=ZPATH_"/"_$$TAG(ZOID)_NEWNUM ; CREATE THE XPATH FOR THIS NODE
I $G(ZREDUX)'="" D ; REDUX PROVIDED?
. N GT S GT=$P(NEWPATH,ZREDUX,2)
. I GT'="" S NEWPATH=GT
S @ZXIDX@(NEWPATH)=ZOID ; ADD THE XPATH FOR THIS NODE TO THE XPATH INDEX
N GA D ATT("GA",ZOID) ; GET ATTRIBUTES FOR THIS NODE
I $D(GA) D ; PROCESS THE ATTRIBUTES
. N ZI S ZI=""
. F S ZI=$O(GA(ZI)) Q:ZI="" D ; FOR EACH ATTRIBUTE
. . N ZP S ZP=NEWPATH_"@"_ZI ; PATH FOR ATTRIBUTE
. . S @ZXPARY@(ZP)=GA(ZI) ; ADD THE ATTRIBUTE XPATH TO THE XP ARRAY
. . I GA(ZI)'="" D ADDNARY(ZP,GA(ZI)) ; ADD THE NHIN ARRAY VALUE
N GD D DATA("GD",ZOID) ; SEE IF THERE IS DATA FOR THIS NODE
I $D(GD(2)) D ;
. M @ZXPARY@(NEWPATH)=GD ; IF MULITPLE DATA MERGE TO THE ARRAY
E I $D(GD(1)) D ;
. S @ZXPARY@(NEWPATH)=GD(1) ; IF SINGLE VALUE, ADD TO ARRAY
. I GD(1)'="" D ADDNARY(NEWPATH,GD(1)) ; ADD TO NHIN ARRAY
N ZFRST S ZFRST=$$FIRST(ZOID) ; SET FIRST CHILD
I ZFRST'=0 D ; THERE IS A CHILD
. N ZNUM
. N ZMULT S ZMULT=$$ISMULT(ZFRST) ; IS FIRST CHILD A MULTIPLE
. D DOMO(ZFRST,NEWPATH,ZNARY,ZXIDX,ZXPARY,$S(ZMULT:1,1:""),ZREDUX) ; THE CHILD
N GNXT S GNXT=$$NXTSIB(ZOID)
I $$TAG(GNXT)'=$$TAG(ZOID) S ZNUM="" ; RESET COUNTING AFTER MULTIPLES
I GNXT'=0 D ;
. N ZMULT S ZMULT=$$ISMULT(GNXT) ; IS THE SIBLING A MULTIPLE?
. I (ZNUM="")&(ZMULT) D ; SIBLING IS FIRST OF MULTIPLES
. . N ZNUM S ZNUM=1 ;
. . D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; DO NEXT SIB
. E D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,$S(ZNUM>0:ZNUM+1,1:""),ZREDUX) ; SIB
Q
;
ADDNARY(ZXP,ZVALUE) ; ADD AN NHIN ARRAY VALUE TO ZNARY
;
; IF ZATT=1 THE ARRAY IS ADDED AS ATTRIBUTES
;
N ZZI,ZZJ,ZZN
S ZZI=$P(ZXP,"/",1) ; FIRST PIECE OF XPATH ARRAY
I ZZI="" Q ; DON'T ADD THIS ONE .. PROBABLY THE //results NODE
S ZZJ=$P(ZXP,ZZI_"/",2) ; REST OF XPATH ARRAY
S ZZJ=$TR(ZZJ,"/",".") ; REPLACE / WITH .
I ZZI'["]" D ; A SINGLETON
. S ZZN=1
E D ; THERE IS AN [x] OCCURANCE
. S ZZN=$P($P(ZZI,"[",2),"]",1) ; PULL OUT THE OCCURANCE
. S ZZI=$P(ZZI,"[",1) ; TAKE OUT THE [X]
I ZZJ'="" D ; TIME TO ADD THE VALUE
. S @ZNARY@(ZZI,ZZN,ZZJ)=ZVALUE
Q
;
PARSE(INXML,INDOC) ;CALL THE MXML PARSER ON INXML, PASSED BY NAME
; INDOC IS PASSED AS THE DOCUMENT NAME - DON'T KNOW WHERE TO STORE THIS NOW
; EXTRINSIC WHICH RETURNS THE DOCID ASSIGNED BY MXML
;Q $$EN^MXMLDOM(INXML)
Q $$EN^MXMLDOM(INXML,"W")
;
ISMULT(ZOID) ; RETURN TRUE IF ZOID IS ONE OF A MULTIPLE
N ZN
;I $$TAG(ZOID)["entry" B
S ZN=$$NXTSIB(ZOID)
I ZN'="" Q $$TAG(ZOID)=$$TAG(ZN) ; IF TAG IS THE SAME AS NEXT SIB TAG
Q 0
;
FIRST(ZOID) ;RETURNS THE OID OF THE FIRST CHILD OF ZOID
Q $$CHILD^MXMLDOM(C0SDOCID,ZOID)
;
PARENT(ZOID) ;RETURNS THE OID OF THE PARENT OF ZOID
Q $$PARENT^MXMLDOM(C0SDOCID,ZOID)
;
ATT(RTN,NODE) ;GET ATTRIBUTES FOR ZOID
S HANDLE=C0SDOCID
K @RTN
D GETTXT^MXMLDOM("A")
Q
;
TAG(ZOID) ; RETURNS THE XML TAG FOR THE NODE
;I ZOID=149 B ;GPLTEST
N X,Y
S Y=""
S X=$G(C0SCBK("TAG")) ;IS THERE A CALLBACK FOR THIS ROUTINE
I X'="" X X ; EXECUTE THE CALLBACK, SHOULD SET Y
I Y="" S Y=$$NAME^MXMLDOM(C0SDOCID,ZOID)
Q Y
;
NXTSIB(ZOID) ; RETURNS THE NEXT SIBLING
Q $$SIBLING^MXMLDOM(C0SDOCID,ZOID)
;
DATA(ZT,ZOID) ; RETURNS DATA FOR THE NODE
;N ZT,ZN S ZT=""
;S C0SDOM=$NA(^TMP("MXMLDOM",$J,C0SDOCID))
;Q $G(@C0SDOM@(ZOID,"T",1))
S ZN=$$TEXT^MXMLDOM(C0SDOCID,ZOID,ZT)
Q
;
OUTXML(ZRTN,INID,NO1ST) ; USES C0SMXMLB (MXMLBLD) TO OUTPUT XML FROM AN MXMLDOM
;
S C0SDOCID=INID
I '$D(NO1ST) S NO1ST=0 ; DO NOT SURPRESS THE <?xml tag generation
D START^C0SMXMLB($$TAG(1),,"G",NO1ST)
D NDOUT($$FIRST(1))
D END^C0SMXMLB ;END THE DOCUMENT
M @ZRTN=^TMP("MXMLBLD",$J)
K ^TMP("MXMLBLD",$J)
Q
;
NDOUT(ZOID) ;CALLBACK ROUTINE - IT IS RECURSIVE
N ZI S ZI=$$FIRST(ZOID)
I ZI'=0 D ; THERE IS A CHILD
. N ZATT D ATT("ZATT",ZOID) ; THESE ARE THE ATTRIBUTES MOVED TO ZATT
. D MULTI^C0SMXMLB("",$$TAG(ZOID),.ZATT,"NDOUT^C0SMXML(ZI)") ;HAVE CHILDREN
E D ; NO CHILD - IF NO CHILDREN, A NODE HAS DATA, IS AN ENDPOINT
. ;W "DOING",ZOID,!
. N ZD D DATA("ZD",ZOID) ;NODES WITHOUT CHILDREN HAVE DATA
. N ZATT D ATT("ZATT",ZOID) ;ATTRIBUTES
. D ITEM^C0SMXMLB("",$$TAG(ZOID),.ZATT,$G(ZD(1))) ;NO CHILDREN
I $$NXTSIB(ZOID)'=0 D ; THERE IS A SIBLING
. D NDOUT($$NXTSIB(ZOID)) ;RECURSE FOR SIBLINGS
Q
;
WNHIN(ZDFN) ; WRITES THE XML OUTPUT OF GET^NHINV TO AN XML FILE
;
N GN,GN2
D GET^NHINV(.GN,ZDFN) ; EXTRACT THE XML
S GN2=$NA(@GN@(1))
W $$OUTPUT^C0SXPATH(GN2,"nhin_"_ZDFN_".xml","/home/wvehr3-09/")
Q
;
NARY2XML(ZGOUT,ZGIN) ; CREATE XML FROM AN NHIN ARRAY
; ZGOUT AND ZGIN ARE PASSED BY NAME
N C0SDOCID
W !,ZGOUT," ",ZGIN
S C0SDOCID=$$DOMI(ZGIN) ; PUT IT INTO THE DOM
D OUTXML(ZGOUT,C0SDOCID)
Q
;
; EXAMPLE OF NHIN ARRAY FORMAT - THIS IS AN OUTPUT OF DOMO ABOVE WHEN RUN
; AGAINST THE OUTPUT OF THE GET^NHINV ROUTINE. (THIS IS NOT REAL PATIENT DATA)
;
;GNARY("med",1,"doses.dose@dose")=10
;GNARY("med",1,"doses.dose@noun")="TABLET"
;GNARY("med",1,"doses.dose@route")="PO"
;GNARY("med",1,"doses.dose@schedule")="QD"
;GNARY("med",1,"doses.dose@units")="MG"
;GNARY("med",1,"doses.dose@unitsPerDose")=1
;GNARY("med",1,"facility@code")=100
;GNARY("med",1,"facility@name")="VOE OFFICE INSTITUTION"
;GNARY("med",1,"form@value")="TAB"
;GNARY("med",1,"id@value")="1N;O"
;GNARY("med",1,"location@code")=5
;GNARY("med",1,"location@name")="3 WEST"
;GNARY("med",1,"name@value")="LISINOPRIL TAB"
;GNARY("med",1,"orderID@value")=294
;GNARY("med",1,"ordered@value")=3110531.001233
;GNARY("med",1,"orderingProvider@code")=63
;GNARY("med",1,"orderingProvider@name")="KING,MATTHEW MICHAEL"
;GNARY("med",1,"products.product.class@code")="ACE INHIBITORS"
;GNARY("med",1,"products.product.vaGeneric@code")=1990
;GNARY("med",1,"products.product.vaGeneric@name")="LISINOPRIL"
;GNARY("med",1,"products.product.vaGeneric@vuid")=4019380
;GNARY("med",1,"products.product.vaProduct@code")=8118
;GNARY("med",1,"products.product.vaProduct@name")="LISINOPRIL 10MG TAB"
;GNARY("med",1,"products.product.vaProduct@vuid")=4008593
;GNARY("med",1,"products.product@code")=6174
;GNARY("med",1,"products.product@name")="LISINOPRIL 10MG U/D"
;GNARY("med",1,"products.product@role")="D"
;GNARY("med",1,"sig")="10MG BY MOUTH EVERY DAY"
;GNARY("med",1,"sig@xml:space")="preserve"
;GNARY("med",1,"status@value")="active"
;GNARY("med",1,"type@value")="OTC"
;GNARY("med",1,"vaType@value")="N"
;
; DOMI is an extrinsic to insert NHIN ARRAY FORMAT arrays into the DOM
; it returns 0 or 1 based on success.
;
; INARY is passed by name and has the format shown above
; HANDLE is the document number in the DOM (both MXML and EWD DOMs will
; be supported eventually - initial implementation is for MXML
;
; PARENT is the node id or tag of the parent under which the DOM will
; be populated. If it is numeric, it is a node. If it is a string, the DOM
; will be searched to find the tag. If not found and there is no root,
; it will be inserted as the root. If not found and there is a root, it
; will be inserted under the root.
;
; For the above example the call would be OK=$$DOMI("GNARY",0,"results")
; because "results" is the root tag. Use OUTXML to render the xml from
; the DOM.
;
DOMI(INARY,HANDLE,PARENT) ; EXTRINSIC TO INSERT NHIN ARRAYS TO A DOM
;
N ZPARNODE
S (SUCCESS,LEVEL,LEVEL(0),NODE)=0
I '$D(INARY) Q 0 ; NO ARRAY PASSED
I '$D(HANDLE) S HANDLE=$$NEWDOM() ; MAKE A NEW DOM
;I PARENT="" S PARENT="root"
I +$G(PARENT)>0 S ZPARNODE=PARENT ; WE HAVE BEEN PASSED A PARENT NODE ID
E I $L($G(PARENT))>0 D ; TBD FIND THE PARENT IN THE DOM AND SET LEVEL
. D STARTELE^MXMLDOM(PARENT) ; INSERT THE PARENT NODE
. S ZPARNODE=1 ;
; WE NOW HAVE A HANDLE AND A PARENT NODE AND LEVEL HAS BEEN SET
N ZEXARY
D EXPAND("ZEXARY",INARY) ; EXPAND THE NHIN ARRAY
D MAJOR("ZEXARY") ; PROCESS ALL THE NODES TO BE ADDED
I $L($G(PARENT))>0 D ENDELE^MXMLDOM(PARENT) ; CLOSE OUT THE PARENT NODE
Q HANDLE ; SUCCESS
;
MAJOR(ZARY) ; RECURSIVE ROUTINE FOR INTERMEDIATE NODES
N ZI S ZI=""
N ZTAG
F S ZI=$O(@ZARY@(ZI)) Q:ZI="" D ; FOR EACH SECTION
. N ZELEADD S ZELEADD=0
. I ZI["@" D ; END NODE HAS NO VALUE, ONLY ATTRIBUTES
. . S ZTAG=$P(ZI,"@",1) ; PULL OUT THE TAG
. . K ZATT ; CLEAR OUT LAST ONE
. . M ZATT=@ZARY@(ZI,1) ; GET ATTRIBUTE ARRAY
. . D STARTELE^MXMLDOM(ZTAG,.ZATT) ; ADD THE NODE
. . S ZELEADD=1 ; FLAG TO NOT ADD THE ELEMENT TWICE
. I $O(@ZARY@(ZI,""))="" D ;END NODE
. . S ZTAG=ZI ; USE ZI FOR THE TAG
. . I 'ZELEADD D STARTELE^MXMLDOM(ZTAG) ; ADD ELEMENT IF NOT THERE
. . S ZELEADD=1 ; ADDED AN ELEMENT
. . D CHAR^MXMLDOM($G(@ZARY@(ZI))) ; INSERT THE VALUE
. I ZELEADD D Q ; NO MORE TO DO ON THIS LEVEL
. . D ENDELE^MXMLDOM(ZTAG) ; CLOSE THE ELEMENT BEFORE LEAVING
. N NEWARY ; INDENTED ARRAY
. N ZN S ZN=0
. F S ZN=$O(@ZARY@(ZI,ZN)) Q:ZN="" D ; FOR EACH MULTIPLE
. . D STARTELE^MXMLDOM(ZI) ; ADD THE INTERMEDIATE TAG
. . S NEWARY=$NA(@ZARY@(ZI,ZN)) ; INDENT THE ARRAY
. . D MAJOR(NEWARY) ; RECURSE FOR INDENTED ARRAY
. . D ENDELE^MXMLDOM(ZI) ; END THE INTERMEDIATE TAG
Q
;
EXPAND(ZZOUT,ZZIN) ; EXPANDS NHIN ARRAY FORMAT TO AN EXPANDED
; CONSISTENT FORMAT
; GNARY("patient",1,"facilities[2].facility@code")="050"
; becomes G2ARY("patient",1,"facilities",2,"facility@",1,"code")="050"
; for easier processing (this is fileman format genius)
; basically removes the dot notation from the strings
;
N ZZI
S ZZI=""
F S ZZI=$O(@ZZIN@(ZZI)) Q:ZZI="" D ;
. N ZZN S ZZN=0
. F S ZZN=$O(@ZZIN@(ZZI,ZZN)) Q:ZZN="" D ;
. . N ZZS S ZZS=""
. . N GA ;PUSH STACK
. . F S ZZS=$O(@ZZIN@(ZZI,ZZN,ZZS)) Q:ZZS="" D ;
. . . K GA ; NEW STACK
. . . D PUSH^C0SXPATH("GA",ZZI_"^"_ZZN) ; PUSH PARENT
. . . N ZZV ; PLACE TO STASH THE VALUE
. . . S ZZV=@ZZIN@(ZZI,ZZN,ZZS) ; VALUE
. . . W !,"VALUE:",ZZV
. . . N GK ; COUNTER
. . . F GK=1:1:$L(ZZS,".") D ; FOR EACH INTERMEDIATE NODE
. . . . N ZZN2 S ZZN2=1 ; DEFAULT IF NO [X]
. . . . N GM S GM=$P(ZZS,".",GK) ; TAG
. . . . I GM["[" D ; IT'S A MULTIPLE
. . . . . S ZZN2=$P($P(GM,"[",2),"]",1) ; PULL OUT THE NUMBER
. . . . . S GM=$P(GM,"[",1) ; PULL OUT THE TAG
. . . . I GM["@" D ; IT'S GOT ATTRIBUTES
. . . . . N GM2 S GM2=$P(GM,"@",2) ; PULLOUT THE ATTRIBUTE NAME
. . . . . D PUSH^C0SXPATH("GA",$P(GM,"@",1)_"@"_"^"_ZZN2) ; PUSH THE TAG
. . . . . D PUSH^C0SXPATH("GA",GM2_"^"_ZZN2)
. . . . E D PUSH^C0SXPATH("GA",GM_"^"_ZZN2) ;
. . . S GA(GA(0))=$P(GA(GA(0)),"^",1)_"^" ; GET RID OF THE LAST "1"
. . . N GZI S GZI="" ; STRING FOR THE INDEX
. . . F GK=1:1:GA(0) D ; TIME TO REVERSE POP THE TAGS
. . . . S GM=$P(GA(GK),"^",1) ; THE TAG
. . . . S ZZN2=$P(GA(GK),"^",2) ; THE NUMBER IF ANY
. . . . I ZZN2="" S GZI=GZI_""""_GM_"""" ; FOR THE LAST ONE
. . . . E S GZI=GZI_""""_GM_""""_","_ZZN2_"," ; FOR THE REST
. . . S GZI2=ZZOUT_"("_GZI_")" ; INCLUDE THE ARRAY NAME
. . . W !,GZI
. . . S @GZI2=ZZV ; REMEMBER THE VALUE?
Q
;
NEWDOM() ; extrinsic which creates a new DOM and returns the HANDLE
N CBK,SUCCESS,LEVEL,NODE,HANDLE
K ^TMP("MXMLERR",$J)
L +^TMP("MXMLDOM",$J):5
E Q 0
S HANDLE=$O(^TMP("MXMLDOM",$J,""),-1)+1,^(HANDLE)=""
L -^TMP("MXMLDOM",$J)
Q HANDLE
;

550
p/C0SLAB.m
View File

@ -1,275 +1,275 @@
C0SLAB ; GPL - Smart Lab Processing ;4/15/12 17:05
;;0.1;C0S;nopatch;noreleasedate;Build 2
;Copyright 2012 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;
;This program is free software; you can redistribute it and/or modify
;it under the terms of the GNU General Public License as published by
;the Free Software Foundation; either version 2 of the License, or
;(at your option) any later version.
;
;This program is distributed in the hope that it will be useful,
;but WITHOUT ANY WARRANTY; without even the implied warranty of
;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;GNU General Public License for more details.
;
;You should have received a copy of the GNU General Public License along
;with this program; if not, write to the Free Software Foundation, Inc.,
;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
;
Q
;
; sample VistA NHIN lab result
;
;^TMP("C0STBL",32,"lab",8,"collected@value")=3110626.16
;^TMP("C0STBL",32,"lab",8,"comment")="Report Released Date/Time: Jun 26, 2011@19:00"
;^TMP("C0STBL",32,"lab",8,"comment@xml:space")="preserve"
;^TMP("C0STBL",32,"lab",8,"facility@code")=100
;^TMP("C0STBL",32,"lab",8,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",32,"lab",8,"groupName@value")="CH 0626 47"
;^TMP("C0STBL",32,"lab",8,"high@value")=" 101"
;^TMP("C0STBL",32,"lab",8,"id@value")="CH;6889372.84;67003"
;^TMP("C0STBL",32,"lab",8,"interpretation@value")="H"
;^TMP("C0STBL",32,"lab",8,"labOrderID@value")=336
;^TMP("C0STBL",32,"lab",8,"localName@value")="FBLDGLU"
;^TMP("C0STBL",32,"lab",8,"loinc@value")="14771-0"
;^TMP("C0STBL",32,"lab",8,"low@value")="69 "
;^TMP("C0STBL",32,"lab",8,"orderID@value")=807
;^TMP("C0STBL",32,"lab",8,"result@value")=178
;^TMP("C0STBL",32,"lab",8,"resulted@value")=3110626.190006
;^TMP("C0STBL",32,"lab",8,"sample@value")="SERUM"
;^TMP("C0STBL",32,"lab",8,"specimen@code")="0X500"
;^TMP("C0STBL",32,"lab",8,"specimen@name")="SERUM"
;^TMP("C0STBL",32,"lab",8,"status@value")="completed"
;^TMP("C0STBL",32,"lab",8,"test@value")="FASTING BLOOD GLUCOSE"
;^TMP("C0STBL",32,"lab",8,"type@value")="CH"
;^TMP("C0STBL",32,"lab",8,"units@value")="MG/DL"
;^TMP("C0STBL",32,"lab",8,"vuid@value")=4656342
;
; sample Smart lab result triples
;
;G("loinc:29571-7","dcterms:identifier")="29571-7"
;G("loinc:29571-7","dcterms:title")="Phe DBS Ql"
;G("loinc:29571-7","rdf:type")="sp:Code"
;G("loinc:29571-7","sp:system")="http://loinc.org/codes/"
;G("loinc:38478-4","dcterms:identifier")="38478-4"
;G("loinc:38478-4","dcterms:title")="Biotinidase DBS Ql"
;G("loinc:38478-4","rdf:type")="sp:Code"
;G("loinc:38478-4","sp:system")="http://loinc.org/codes/"
;G("qqWZZIew993","rdf:type")="sp:Attribution"
;G("qqWZZIew993","sp:startDate")="2007-04-21"
;G("qqWZZIew994","rdf:type")="sp:NarrativeResult"
;G("qqWZZIew994","sp:value")="Normal"
;G("qqWZZIew995","dcterms:title")="Biotinidase DBS Ql"
;G("qqWZZIew995","rdf:type")="sp:CodedValue"
;G("qqWZZIew995","sp:code")="loinc:38478-4"
;G("qqWZZIew997","rdf:type")="sp:Attribution"
;G("qqWZZIew997","sp:startDate")="2007-09-08"
;G("qqWZZIew998","rdf:type")="sp:NarrativeResult"
;G("qqWZZIew998","sp:value")="Normal"
;G("qqWZZIew999","dcterms:title")="Phe DBS Ql"
;G("qqWZZIew999","rdf:type")="sp:CodedValue"
;G("qqWZZIew999","sp:code")="loinc:29571-7"
;G("smart:99912345/lab_results/3d9b39249193","rdf:type")="sp:LabResult"
;G("smart:99912345/lab_results/3d9b39249193","sp:belongsTo")="smart:99912345"
;G("smart:99912345/lab_results/3d9b39249193","sp:labName")="qqWZZIew995"
;G("smart:99912345/lab_results/3d9b39249193","sp:narrativeResult")="qqWZZIew994"
;G("smart:99912345/lab_results/3d9b39249193","sp:specimenCollected")="qqWZZIew993"
;G("smart:99912345/lab_results/426c7adc4f54","rdf:type")="sp:LabResult"
;G("smart:99912345/lab_results/426c7adc4f54","sp:belongsTo")="smart:99912345"
;G("smart:99912345/lab_results/426c7adc4f54","sp:labName")="qqWZZIew999"
;G("smart:99912345/lab_results/426c7adc4f54","sp:narrativeResult")="qqWZZIew998"
;G("smart:99912345/lab_results/426c7adc4f54","sp:specimenCollected")="qqWZZIew997"
;
;
; another Smart example, this one with sp:quantitativeResult
;
;G("loinc:786-4","dcterms:identifier")="786-4"
;G("loinc:786-4","dcterms:title")="MCHC RBC Auto-mCnc"
;G("loinc:786-4","rdf:type")="sp:Code"
;G("loinc:786-4","sp:system")="http://loinc.org/codes/"
;G("nodeID:4439","rdf:type")="sp:ValueAndUnit"
;G("nodeID:4439","sp:unit")="g/dL"
;G("nodeID:4439","sp:value")=36.6
;G("nodeID:4613","rdf:type")="sp:ValueAndUnit"
;G("nodeID:4613","sp:unit")="g/dL"
;G("nodeID:4613","sp:value")=32
;G("nodeID:4672","rdf:type")="sp:Attribution"
;G("nodeID:4672","sp:startDate")="2005-03-10"
;G("nodeID:4866","rdf:type")="sp:ValueAndUnit"
;G("nodeID:4866","sp:unit")="g/dL"
;G("nodeID:4866","sp:value")=36
;G("nodeID:4871","dcterms:title")="MCHC RBC Auto-mCnc"
;G("nodeID:4871","rdf:type")="sp:CodedValue"
;G("nodeID:4871","sp:code")="loinc:786-4"
;G("nodeID:5221","rdf:type")="sp:QuantitativeResult"
;G("nodeID:5221","sp:normalRange")="nodeID:5282"
;G("nodeID:5221","sp:valueAndUnit")="nodeID:4439"
;G("nodeID:5282","rdf:type")="sp:ValueRange"
;G("nodeID:5282","sp:maximum")="nodeID:4866"
;G("nodeID:5282","sp:minimum")="nodeID:4613"
;G("smart:1540505/lab_results/2fc100850766","rdf:type")="sp:LabResult"
;G("smart:1540505/lab_results/2fc100850766","sp:belongsTo")="smart:1540505"
;G("smart:1540505/lab_results/2fc100850766","sp:labName")="nodeID:4871"
;G("smart:1540505/lab_results/2fc100850766","sp:quantitativeResult")="nodeID:5221"
;G("smart:1540505/lab_results/2fc100850766","sp:specimenCollected")="nodeID:4672"
;
LAB(GRTN,C0SARY) ; GRTN, passed by reference,
; is the return name of the graph created. "" if none
; C0SARY is passed in by reference and is the NHIN array of lab
;
I $O(C0SARY("lab",""))="" D Q ;
. I $D(DEBUG) W !,"No Labs"
S GRTN="" ; default to no labs
N C0SGRF
S C0SGRF="vistaSmart:"_ZPATID_"/lab_results"
I $D(DEBUG) W !,"Processing ",C0SGRF
D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
N FARY S FARY="C0XFARY"
D USEFARY^C0XF2N(FARY)
D VOCINIT^C0XUTIL
;
D STARTADD^C0XF2N ; initialize to create triples
;
N ZI S ZI=""
F S ZI=$O(C0SARY("lab",ZI)) Q:ZI="" D ;
. N LRN,ZR ; ZR is the local array for building the new triples
. S LRN=$NA(C0SARY("lab",ZI)) ; base for values in this lab result
. ;
. N RSLTID ; unique Id for this lab result
. S RSLTID=C0SGRF_"/"_$$LKY17^C0XF2N ; use a random number
. ;
. ; i don't like this because the same labs result gets a
. ; different ID every time it's reported. Can't trace it back to VistA
. ; I'd rather be using id@value ie "id@value")="CH;6889372.84;67003"
. ; .. either that or store an OID with the lab result - but that
. ; will have to wait for the redesign of file 60.. - gpl 4/16/2012
. ;
. N LOINC S LOINC=$G(@LRN@("loinc@value"))
. I LOINC="" D Q ;
. . I $D(DEBUG) W !,"NO LOINC VALUE, SKIPPING"
. N LABTST S LABTST=$G(@LRN@("test@value"))
. I $D(DEBUG) D ;
. . W !,"Processing Lab Result ",RSLTID
. . W !,"test: ",LABTST
. . W !,"loinc: ",LOINC
. ;
. ; first do the base result graph
. ;
. S ZR("rdf:type")="sp:LabResult"
. S ZR("sp:belongsTo")=C0SGRF ; the subject for this patient's lab results
. ; ie /vista/smart/99912345/lab_results
. ;
. N LABNAME S LABNAME=$$ANONS^C0XF2N ; new node for lab name
. S ZR("sp:labName")=LABNAME
. ;
. N NARRSLT S NARRSLT=$$ANONS^C0XF2N ; new node for narrative result
. S ZR("sp:narrativeResult")=NARRSLT
. ;
. N QNTRSLT S QNTRSLT=$$ANONS^C0XF2N ; new node for narrative result
. S ZR("sp:quantitativeResult")=QNTRSLT
. ;
. N SPECCOLL S SPECCOLL=$$ANONS^C0XF2N ; new node for specimen collected
. S ZR("sp:specimenCollected")=SPECCOLL
. ;
. D ADDINN^C0XF2N(C0SGRF,RSLTID,.ZR) ; addIfNotNull the triples
. K ZR ; clean up
. ;
. ; create the narrative result graph
. ;
. N IVAL S IVAL=$G(@LRN@("interpretation@value"))'="" D ; H OR L
. I IVAL'=""
. . S ZR("rdf:type")="sp:NarrativeResult"
. . S ZR("sp:value")=$G(@LRN@("interpretation@value")) ; H or L
. . I ZR("sp:value")="L" S ZR("sp:value")="abnormal"
. . I ZR("sp:value")="H" S ZR("sp:value")="abnormal"
. . I ZR("sp:value")="HH" S ZR("sp:value")="critical"
. . I ZR("sp:value")="LL" S ZR("sp:value")="critical"
. . D ADDINN^C0XF2N(C0SGRF,NARRSLT,.ZR)
. . K ZR
. ;
. ; create the quantitative result graph
. ;
. S ZR("rdf:type")="sp:QuantitativeResult"
. N NORMNM S NORMNM=$$ANONS^C0XF2N ; new node for normal range graph
. N VUNM S VUNM=$$ANONS^C0XF2N ; new node for value and unit graph
. N HASNORMAL S HASNORMAL=0
. I $G(@LRN@("high@value"))'="" S HASNORMAL=1
. I HASNORMAL S ZR("sp:normalRange")=NORMNM
. S ZR("sp:valueAndUnit")=VUNM
. D ADDINN^C0XF2N(C0SGRF,QNTRSLT,.ZR)
. K ZR
. ;
. ; create the normal range graph
. ;
. I HASNORMAL D ;
. . S ZR("rdf:type")="sp:ValueRange"
. . N MAXNM S MAXNM=$$ANONS^C0XF2N ; new node for maximum graph
. . N MINNM S MINNM=$$ANONS^C0XF2N ; new node for minimum graph
. . S ZR("sp:maximum")=MAXNM
. . S ZR("sp:minimum")=MINNM
. . D ADDINN^C0XF2N(C0SGRF,NORMNM,.ZR)
. . K ZR
. . ;
. . ; create the maximum graph
. . ;
. . S ZR("rdf:type")="sp:ValueAndUnit"
. . S ZR("sp:unit")=$G(@LRN@("units@value"))
. . S ZR("sp:value")=$G(@LRN@("high@value"))
. . D ADDINN^C0XF2N(C0SGRF,MAXNM,.ZR)
. . K ZR
. . ;
. . ; create the minimum graph
. . ;
. . S ZR("rdf:type")="sp:ValueAndUnit"
. . S ZR("sp:unit")=$G(@LRN@("units@value"))
. . S ZR("sp:value")=$G(@LRN@("low@value"))
. . D ADDINN^C0XF2N(C0SGRF,MINNM,.ZR)
. . K ZR
. ;
. ; create the value and unit graph
. ;
. S ZR("rdf:type")="sp:ValueAndUnit"
. S ZR("sp:unit")=$G(@LRN@("units@value"))
. I ZR("sp:unit")="" S ZR("sp:unit")="{unknown}" ;$G(@LRN@("test@value"))
. S ZR("sp:value")=$G(@LRN@("result@value"))
. D ADDINN^C0XF2N(C0SGRF,VUNM,.ZR)
. K ZR
. ;
. ; create specimen collected graph
. ;
. S ZR("rdf:type")="sp:Attribution"
. S ZR("sp:startDate")=$$SPDATE^C0SUTIL($G(@LRN@("collected@value")))
. D ADDINN^C0XF2N(C0SGRF,SPECCOLL,.ZR)
. K ZR
. ;
. ; create lab name graph - this contains the test name and code
. ;
. I LOINC'="" D ;
. . S ZR("rdf:type")="sp:CodedValue"
. . S ZR("dcterms:title")=LABTST
. . N LOINCNM S LOINCNM="loinc:"_LOINC
. . S ZR("sp:code")="loinc:"_LOINC
. . D ADDINN^C0XF2N(C0SGRF,LABNAME,.ZR)
. . K ZR
. . S ZR("dcterms:identifier")=LOINC
. . S ZR("dcterms:title")=LABTST
. . S ZR("rdf:type")="sp:Code"
. . S ZR("sp:system")="http://loinc.org/codes/"
. . D ADDINN^C0XF2N(C0SGRF,LOINCNM,.ZR)
. . K ZR
. ;
. ; that's all for now folks (there is more to do like reference ranges
. ; and result values)
. ;
D BULKLOAD^C0XF2N(.C0XFDA)
S GRTN=C0SGRF
Q
;
SAMPLE ; import sample lab tests to the triplestore
N GN
S GN=$NA(^rdf("lab_results"))
D INSRDF^C0XF2N(GN,"/smart/lab/samples")
Q
;
C0SLAB ; GPL - Smart Lab Processing ;4/15/12 17:05
;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 4
;Copyright 2012 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;
;This program is free software; you can redistribute it and/or modify
;it under the terms of the GNU General Public License as published by
;the Free Software Foundation; either version 2 of the License, or
;(at your option) any later version.
;
;This program is distributed in the hope that it will be useful,
;but WITHOUT ANY WARRANTY; without even the implied warranty of
;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;GNU General Public License for more details.
;
;You should have received a copy of the GNU General Public License along
;with this program; if not, write to the Free Software Foundation, Inc.,
;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
;
Q
;
; sample VistA NHIN lab result
;
;^TMP("C0STBL",32,"lab",8,"collected@value")=3110626.16
;^TMP("C0STBL",32,"lab",8,"comment")="Report Released Date/Time: Jun 26, 2011@19:00"
;^TMP("C0STBL",32,"lab",8,"comment@xml:space")="preserve"
;^TMP("C0STBL",32,"lab",8,"facility@code")=100
;^TMP("C0STBL",32,"lab",8,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",32,"lab",8,"groupName@value")="CH 0626 47"
;^TMP("C0STBL",32,"lab",8,"high@value")=" 101"
;^TMP("C0STBL",32,"lab",8,"id@value")="CH;6889372.84;67003"
;^TMP("C0STBL",32,"lab",8,"interpretation@value")="H"
;^TMP("C0STBL",32,"lab",8,"labOrderID@value")=336
;^TMP("C0STBL",32,"lab",8,"localName@value")="FBLDGLU"
;^TMP("C0STBL",32,"lab",8,"loinc@value")="14771-0"
;^TMP("C0STBL",32,"lab",8,"low@value")="69 "
;^TMP("C0STBL",32,"lab",8,"orderID@value")=807
;^TMP("C0STBL",32,"lab",8,"result@value")=178
;^TMP("C0STBL",32,"lab",8,"resulted@value")=3110626.190006
;^TMP("C0STBL",32,"lab",8,"sample@value")="SERUM"
;^TMP("C0STBL",32,"lab",8,"specimen@code")="0X500"
;^TMP("C0STBL",32,"lab",8,"specimen@name")="SERUM"
;^TMP("C0STBL",32,"lab",8,"status@value")="completed"
;^TMP("C0STBL",32,"lab",8,"test@value")="FASTING BLOOD GLUCOSE"
;^TMP("C0STBL",32,"lab",8,"type@value")="CH"
;^TMP("C0STBL",32,"lab",8,"units@value")="MG/DL"
;^TMP("C0STBL",32,"lab",8,"vuid@value")=4656342
;
; sample Smart lab result triples
;
;G("loinc:29571-7","dcterms:identifier")="29571-7"
;G("loinc:29571-7","dcterms:title")="Phe DBS Ql"
;G("loinc:29571-7","rdf:type")="sp:Code"
;G("loinc:29571-7","sp:system")="http://loinc.org/codes/"
;G("loinc:38478-4","dcterms:identifier")="38478-4"
;G("loinc:38478-4","dcterms:title")="Biotinidase DBS Ql"
;G("loinc:38478-4","rdf:type")="sp:Code"
;G("loinc:38478-4","sp:system")="http://loinc.org/codes/"
;G("qqWZZIew993","rdf:type")="sp:Attribution"
;G("qqWZZIew993","sp:startDate")="2007-04-21"
;G("qqWZZIew994","rdf:type")="sp:NarrativeResult"
;G("qqWZZIew994","sp:value")="Normal"
;G("qqWZZIew995","dcterms:title")="Biotinidase DBS Ql"
;G("qqWZZIew995","rdf:type")="sp:CodedValue"
;G("qqWZZIew995","sp:code")="loinc:38478-4"
;G("qqWZZIew997","rdf:type")="sp:Attribution"
;G("qqWZZIew997","sp:startDate")="2007-09-08"
;G("qqWZZIew998","rdf:type")="sp:NarrativeResult"
;G("qqWZZIew998","sp:value")="Normal"
;G("qqWZZIew999","dcterms:title")="Phe DBS Ql"
;G("qqWZZIew999","rdf:type")="sp:CodedValue"
;G("qqWZZIew999","sp:code")="loinc:29571-7"
;G("smart:99912345/lab_results/3d9b39249193","rdf:type")="sp:LabResult"
;G("smart:99912345/lab_results/3d9b39249193","sp:belongsTo")="smart:99912345"
;G("smart:99912345/lab_results/3d9b39249193","sp:labName")="qqWZZIew995"
;G("smart:99912345/lab_results/3d9b39249193","sp:narrativeResult")="qqWZZIew994"
;G("smart:99912345/lab_results/3d9b39249193","sp:specimenCollected")="qqWZZIew993"
;G("smart:99912345/lab_results/426c7adc4f54","rdf:type")="sp:LabResult"
;G("smart:99912345/lab_results/426c7adc4f54","sp:belongsTo")="smart:99912345"
;G("smart:99912345/lab_results/426c7adc4f54","sp:labName")="qqWZZIew999"
;G("smart:99912345/lab_results/426c7adc4f54","sp:narrativeResult")="qqWZZIew998"
;G("smart:99912345/lab_results/426c7adc4f54","sp:specimenCollected")="qqWZZIew997"
;
;
; another Smart example, this one with sp:quantitativeResult
;
;G("loinc:786-4","dcterms:identifier")="786-4"
;G("loinc:786-4","dcterms:title")="MCHC RBC Auto-mCnc"
;G("loinc:786-4","rdf:type")="sp:Code"
;G("loinc:786-4","sp:system")="http://loinc.org/codes/"
;G("nodeID:4439","rdf:type")="sp:ValueAndUnit"
;G("nodeID:4439","sp:unit")="g/dL"
;G("nodeID:4439","sp:value")=36.6
;G("nodeID:4613","rdf:type")="sp:ValueAndUnit"
;G("nodeID:4613","sp:unit")="g/dL"
;G("nodeID:4613","sp:value")=32
;G("nodeID:4672","rdf:type")="sp:Attribution"
;G("nodeID:4672","sp:startDate")="2005-03-10"
;G("nodeID:4866","rdf:type")="sp:ValueAndUnit"
;G("nodeID:4866","sp:unit")="g/dL"
;G("nodeID:4866","sp:value")=36
;G("nodeID:4871","dcterms:title")="MCHC RBC Auto-mCnc"
;G("nodeID:4871","rdf:type")="sp:CodedValue"
;G("nodeID:4871","sp:code")="loinc:786-4"
;G("nodeID:5221","rdf:type")="sp:QuantitativeResult"
;G("nodeID:5221","sp:normalRange")="nodeID:5282"
;G("nodeID:5221","sp:valueAndUnit")="nodeID:4439"
;G("nodeID:5282","rdf:type")="sp:ValueRange"
;G("nodeID:5282","sp:maximum")="nodeID:4866"
;G("nodeID:5282","sp:minimum")="nodeID:4613"
;G("smart:1540505/lab_results/2fc100850766","rdf:type")="sp:LabResult"
;G("smart:1540505/lab_results/2fc100850766","sp:belongsTo")="smart:1540505"
;G("smart:1540505/lab_results/2fc100850766","sp:labName")="nodeID:4871"
;G("smart:1540505/lab_results/2fc100850766","sp:quantitativeResult")="nodeID:5221"
;G("smart:1540505/lab_results/2fc100850766","sp:specimenCollected")="nodeID:4672"
;
LAB(GRTN,C0SARY) ; GRTN, passed by reference,
; is the return name of the graph created. "" if none
; C0SARY is passed in by reference and is the NHIN array of lab
;
I $O(C0SARY("lab",""))="" D Q ;
. I $D(DEBUG) W !,"No Labs"
S GRTN="" ; default to no labs
N C0SGRF
S C0SGRF="vistaSmart:"_ZPATID_"/lab_results"
I $D(DEBUG) W !,"Processing ",C0SGRF
D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
N FARY S FARY="C0XFARY"
D USEFARY^C0XF2N(FARY)
D VOCINIT^C0XUTIL
;
D STARTADD^C0XF2N ; initialize to create triples
;
N ZI S ZI=""
F S ZI=$O(C0SARY("lab",ZI)) Q:ZI="" D ;
. N LRN,ZR ; ZR is the local array for building the new triples
. S LRN=$NA(C0SARY("lab",ZI)) ; base for values in this lab result
. ;
. N RSLTID ; unique Id for this lab result
. S RSLTID=C0SGRF_"/"_$$LKY17^C0XF2N ; use a random number
. ;
. ; i don't like this because the same labs result gets a
. ; different ID every time it's reported. Can't trace it back to VistA
. ; I'd rather be using id@value ie "id@value")="CH;6889372.84;67003"
. ; .. either that or store an OID with the lab result - but that
. ; will have to wait for the redesign of file 60.. - gpl 4/16/2012
. ;
. N LOINC S LOINC=$G(@LRN@("loinc@value"))
. I LOINC="" D Q ;
. . I $D(DEBUG) W !,"NO LOINC VALUE, SKIPPING"
. N LABTST S LABTST=$G(@LRN@("test@value"))
. I $D(DEBUG) D ;
. . W !,"Processing Lab Result ",RSLTID
. . W !,"test: ",LABTST
. . W !,"loinc: ",LOINC
. ;
. ; first do the base result graph
. ;
. S ZR("rdf:type")="sp:LabResult"
. S ZR("sp:belongsTo")=C0SGRF ; the subject for this patient's lab results
. ; ie /vista/smart/99912345/lab_results
. ;
. N LABNAME S LABNAME=$$ANONS^C0XF2N ; new node for lab name
. S ZR("sp:labName")=LABNAME
. ;
. N NARRSLT S NARRSLT=$$ANONS^C0XF2N ; new node for narrative result
. S ZR("sp:narrativeResult")=NARRSLT
. ;
. N QNTRSLT S QNTRSLT=$$ANONS^C0XF2N ; new node for narrative result
. S ZR("sp:quantitativeResult")=QNTRSLT
. ;
. N SPECCOLL S SPECCOLL=$$ANONS^C0XF2N ; new node for specimen collected
. S ZR("sp:specimenCollected")=SPECCOLL
. ;
. D ADDINN^C0XF2N(C0SGRF,RSLTID,.ZR) ; addIfNotNull the triples
. K ZR ; clean up
. ;
. ; create the narrative result graph
. ;
. N IVAL S IVAL=$G(@LRN@("interpretation@value"))'="" D ; H OR L
. I IVAL'=""
. . S ZR("rdf:type")="sp:NarrativeResult"
. . S ZR("sp:value")=$G(@LRN@("interpretation@value")) ; H or L
. . I ZR("sp:value")="L" S ZR("sp:value")="abnormal"
. . I ZR("sp:value")="H" S ZR("sp:value")="abnormal"
. . I ZR("sp:value")="HH" S ZR("sp:value")="critical"
. . I ZR("sp:value")="LL" S ZR("sp:value")="critical"
. . D ADDINN^C0XF2N(C0SGRF,NARRSLT,.ZR)
. . K ZR
. ;
. ; create the quantitative result graph
. ;
. S ZR("rdf:type")="sp:QuantitativeResult"
. N NORMNM S NORMNM=$$ANONS^C0XF2N ; new node for normal range graph
. N VUNM S VUNM=$$ANONS^C0XF2N ; new node for value and unit graph
. N HASNORMAL S HASNORMAL=0
. I $G(@LRN@("high@value"))'="" S HASNORMAL=1
. I HASNORMAL S ZR("sp:normalRange")=NORMNM
. S ZR("sp:valueAndUnit")=VUNM
. D ADDINN^C0XF2N(C0SGRF,QNTRSLT,.ZR)
. K ZR
. ;
. ; create the normal range graph
. ;
. I HASNORMAL D ;
. . S ZR("rdf:type")="sp:ValueRange"
. . N MAXNM S MAXNM=$$ANONS^C0XF2N ; new node for maximum graph
. . N MINNM S MINNM=$$ANONS^C0XF2N ; new node for minimum graph
. . S ZR("sp:maximum")=MAXNM
. . S ZR("sp:minimum")=MINNM
. . D ADDINN^C0XF2N(C0SGRF,NORMNM,.ZR)
. . K ZR
. . ;
. . ; create the maximum graph
. . ;
. . S ZR("rdf:type")="sp:ValueAndUnit"
. . S ZR("sp:unit")=$G(@LRN@("units@value"))
. . S ZR("sp:value")=$G(@LRN@("high@value"))
. . D ADDINN^C0XF2N(C0SGRF,MAXNM,.ZR)
. . K ZR
. . ;
. . ; create the minimum graph
. . ;
. . S ZR("rdf:type")="sp:ValueAndUnit"
. . S ZR("sp:unit")=$G(@LRN@("units@value"))
. . S ZR("sp:value")=$G(@LRN@("low@value"))
. . D ADDINN^C0XF2N(C0SGRF,MINNM,.ZR)
. . K ZR
. ;
. ; create the value and unit graph
. ;
. S ZR("rdf:type")="sp:ValueAndUnit"
. S ZR("sp:unit")=$G(@LRN@("units@value"))
. I ZR("sp:unit")="" S ZR("sp:unit")="{unknown}" ; was $G(@LRN@("test@value")) gpl
. S ZR("sp:value")=$G(@LRN@("result@value"))
. D ADDINN^C0XF2N(C0SGRF,VUNM,.ZR)
. K ZR
. ;
. ; create specimen collected graph
. ;
. S ZR("rdf:type")="sp:Attribution"
. S ZR("sp:startDate")=$$SPDATE^C0SUTIL($G(@LRN@("collected@value")))
. D ADDINN^C0XF2N(C0SGRF,SPECCOLL,.ZR)
. K ZR
. ;
. ; create lab name graph - this contains the test name and code
. ;
. I LOINC'="" D ;
. . S ZR("rdf:type")="sp:CodedValue"
. . S ZR("dcterms:title")=LABTST
. . N LOINCNM S LOINCNM="loinc:"_LOINC
. . S ZR("sp:code")="loinc:"_LOINC
. . D ADDINN^C0XF2N(C0SGRF,LABNAME,.ZR)
. . K ZR
. . S ZR("dcterms:identifier")=LOINC
. . S ZR("dcterms:title")=LABTST
. . S ZR("rdf:type")="sp:Code"
. . S ZR("sp:system")="http://loinc.org/codes/"
. . D ADDINN^C0XF2N(C0SGRF,LOINCNM,.ZR)
. . K ZR
. ;
. ; that's all for now folks (there is more to do like reference ranges
. ; and result values)
. ;
D BULKLOAD^C0XF2N(.C0XFDA)
S GRTN=C0SGRF
Q
;
SAMPLE ; import sample lab tests to the triplestore
N GN
S GN=$NA(^rdf("lab_results"))
D INSRDF^C0XF2N(GN,"/smart/lab/samples")
Q
;

112
p/C0SMART.m
View File

@ -1,56 +1,56 @@
C0SMART ; GPL - Smart Container Entry Points;2/22/12 17:05
;;0.1;C0S;nopatch;noreleasedate;Build 2
;Copyright 2012 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;
;This program is free software; you can redistribute it and/or modify
;it under the terms of the GNU General Public License as published by
;the Free Software Foundation; either version 2 of the License, or
;(at your option) any later version.
;
;This program is distributed in the hope that it will be useful,
;but WITHOUT ANY WARRANTY; without even the implied warranty of
;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;GNU General Public License for more details.
;
;You should have received a copy of the GNU General Public License along
;with this program; if not, write to the Free Software Foundation, Inc.,
;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
;
Q
EN(ZRTN,ZPATID,ZTYP,ZFORM,DEBUG) ; return a Smart RDF file section ZTYP
; for patient ZPATID; ZFORM defaults to rdf
; ZRTN is passed by reference
; For now, ZPATID is the DFN
;
I '$D(ZFORM) S ZFORM="rdf"
K ZRTN ; CLEAN RETURN
N C0SARY
I ZTYP="patient" D EN^C0SNHIN(.C0SARY,ZPATID,"patient")
E D EN^C0SNHIN(.C0SARY,ZPATID,"patient;"_ZTYP)
I $G(C0SARY("patient",1,"id@value"))'=ZPATID D Q ;
. W !,"Error Retreiving Patient Record"
;
K C0XFDA
;
N C0SGR ; graph
;
; processing table
;
N C0SCTRL
S C0SCTRL("med")="D MED^C0SMED(.C0SGR,.C0SARY)"
S C0SCTRL("patient")="D PATIENT^C0SDEM(.C0SGR,.C0SARY)"
S C0SCTRL("lab")="D LAB^C0SLAB(.C0SGR,.C0SARY)"
S C0SCTRL("problem")="D PROB^C0SPROB2(.C0SGR,.C0SARY)"
;
I '$D(C0SCTRL(ZTYP)) W !,ZTYP," ","Not Supported" Q ;
N ZX
S ZX=C0SCTRL(ZTYP)
X ZX ;
;
I '$D(C0SGR) Q ;
;
D getGraph^C0XGET1(.ZRTN,C0SGR,ZFORM)
;
Q
;
C0SMART ; GPL - Smart Container Entry Points;2/22/12 17:05
;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 4
;Copyright 2012 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;
;This program is free software; you can redistribute it and/or modify
;it under the terms of the GNU General Public License as published by
;the Free Software Foundation; either version 2 of the License, or
;(at your option) any later version.
;
;This program is distributed in the hope that it will be useful,
;but WITHOUT ANY WARRANTY; without even the implied warranty of
;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;GNU General Public License for more details.
;
;You should have received a copy of the GNU General Public License along
;with this program; if not, write to the Free Software Foundation, Inc.,
;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
;
Q
EN(ZRTN,ZPATID,ZTYP,ZFORM,DEBUG) ; return a Smart RDF file section ZTYP
; for patient ZPATID; ZFORM defaults to rdf
; ZRTN is passed by reference
; For now, ZPATID is the DFN
;
I '$D(ZFORM) S ZFORM="rdf"
K ZRTN ; CLEAN RETURN
N C0SARY
I ZTYP="patient" D EN^C0SNHIN(.C0SARY,ZPATID,"patient")
E D EN^C0SNHIN(.C0SARY,ZPATID,"patient;"_ZTYP)
I $G(C0SARY("patient",1,"id@value"))'=ZPATID D Q ;
. W !,"Error Retreiving Patient Record"
;
K C0XFDA
;
N C0SGR ; graph
;
; processing table
;
N C0SCTRL
S C0SCTRL("med")="D MED^C0SMED(.C0SGR,.C0SARY)"
S C0SCTRL("patient")="D PATIENT^C0SDEM(.C0SGR,.C0SARY)"
S C0SCTRL("lab")="D LAB^C0SLAB(.C0SGR,.C0SARY)"
S C0SCTRL("problem")="D PROB^C0SPROB2(.C0SGR,.C0SARY)"
;
I '$D(C0SCTRL(ZTYP)) W !,ZTYP," ","Not Supported" Q ;
N ZX
S ZX=C0SCTRL(ZTYP)
X ZX ;
;
I '$D(C0SGR) Q ;
;
D getGraph^C0XGET1(.ZRTN,C0SGR,ZFORM)
;
Q
;

314
p/C0SMED.m
View File

@ -1,157 +1,157 @@
C0SMED ; GPL - Smart Meds Processing ;2/22/12 17:05
;;0.1;C0S;nopatch;noreleasedate;Build 2
;Copyright 2012 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;
;This program is free software; you can redistribute it and/or modify
;it under the terms of the GNU General Public License as published by
;the Free Software Foundation; either version 2 of the License, or
;(at your option) any later version.
;
;This program is distributed in the hope that it will be useful,
;but WITHOUT ANY WARRANTY; without even the implied warranty of
;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;GNU General Public License for more details.
;
;You should have received a copy of the GNU General Public License along
;with this program; if not, write to the Free Software Foundation, Inc.,
;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
;
Q
;
MED(GRTN,C0SARY) ; GRTN, passed by reference,
; is the return name of the graph created. "" if none
; C0SARY is passed in by reference and is the NHIN array of meds
;
I $O(C0SARY("med",""))="" D Q ;
. I $D(DEBUG) W !,"No Meds"
S GRTN="" ; default to no meds
N C0SGRF
S C0SGRF="vistaSmart:"_ZPATID_"/"_ZTYP
I $D(DEBUG) W !,"Processing ",C0SGRF
D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
N MEDTRP ; MEDS TRIPLES
D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
N FARY S FARY="C0XFARY"
D USEFARY^C0XF2N(FARY)
D VOCINIT^C0XUTIL
;
N DUPCHK S DUPCHK="" ; check for no duplicates
N ZI S ZI=""
F S ZI=$O(C0SARY("med",ZI)) Q:ZI="" D ;
. N SDATE,SDTMP
. I $G(C0SARY("med",ZI,"vaStatus@value"))="EXPIRED" D Q ;
. . I $D(DEBUG) W !,"Expired Mediation, Skipping"
. I $G(COSARY("med",ZI,"vaType@value"))="I" D Q ;
. . I $D(DEBUG) W !,"Inpatient Med, skipping"
. I $G(COSARY("med",ZI,"vaType@value"))="V" D Q ;
. . I $D(DEBUG) W !,"IV Inpatient Med, skipping"
. ;
. S SDTMP=$G(C0SARY("med",ZI,"ordered@value"))
. I SDTMP="" D ;
. . S SDTMP=$G(C0SARY("med",ZI,"start@value"))
. S SDATE=$$FMTE^XLFDT(SDTMP,"7D") ; ordered date
. S SDATE=$TR(SDATE,"/","-") ; change slashes to hyphens
. I SDATE="" S SDATE="UNKNOWN"
. N DNAME,VUID,DCODE,RXNORM,SIG
. S DNAME=$G(C0SARY("med",ZI,"name@value"))
. I DNAME="" D ;
. . S DNAME=$G(C0SARY("med",ZI,"products.product@name"))
. S VUID=$G(C0SARY("med",ZI,"products.product.vaProduct@vuid"))
. S DCODE=$G(C0SARY("med",ZI,"products.product.vaProduct@code"))
. I DCODE="" S DCODE=$G(C0SARY("med",ZI,"id@value"))
. S RXNORM=$$RXCUI(VUID) ; look up RxNorm code
. I $P(RXNORM,"^",2)="RXNORM" D ;
. . S RXVER=$P(RXNORM,"^",3)
. . S RXNORM=$P(RXNORM,"^",1)
. E D Q ;
. . I $D(DEBUG) W !,"NO RXNORM NUMBER AVAILABLE"
. . I $D(DEBUG) W !,RXNORM
. I DNAME="" D Q ;
. . I $D(DEBUG) W !,"Error No Drug Name"
. S MEDGRF=C0SGRF_"/"_DCODE_"-"_$G(SDTMP)
. I +$D(DUPCHK(MEDGRF)) D Q ; NO DUPS ALLOWED
. . I $D(DEBUG) W !,"Found Duplicate Medication ",MEDGRF
. S DUPCHK(MEDGRF)=""
. I $D(DEBUG) D ;
. . W !,"Processing Medication ",MEDGRF
. . W !,DNAME
. . W !,RXNORM
. S SIG=$G(C0SARY("med",ZI,"sig"))
. I SIG["|" D ;
. . N SIGTMP
. . S SIGTMP=SIG
. . S SIG=$P(SIGTMP,"|",2) ; remove the drug name from the sig
. . I DNAME["FREE TXT" D ; eRx free text drug, get drug name from sig
. . . S DNAME=$P(SIGTMP,"|",1) ; eRx Drug name is stored as the first piece of the sig
. K C0XFARY
. D ADD^C0XF2N(C0SGRF,MEDGRF,"rdf:type","sp:Medication",FARY)
. D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:belongsTo",C0SGRF,FARY)
. N DSUBJ S DSUBJ=$$ANONS^C0XF2N ; anonomous subject
. D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:drugName",DSUBJ,FARY)
. I SIG'="" D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:instructions",SIG,FARY)
. N NQTY,NQTY2,NFREQ,NFREQ2
. S NQTY=$$ANONS^C0XF2N ; anonomous subject
. D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:quantity",NQTY,FARY)
. S NQTY2=$$ANONS^C0XF2N ; anonomous subject
. D ADD^C0XF2N(C0SGRF,NQTY,"sp:ValueAndUnit",NQTY2,FARY)
. N DOSE S DOSE=$G(C0SARY("med",ZI,"doses.dose@dose"))
. I DOSE="" S DOSE="UNKNOWN"
. N UNIT S UNIT=$G(C0SARY("med",ZI,"doses.dose@units"))
. I UNIT="" S UNIT="UNKNOWN"
. D ADD^C0XF2N(C0SGRF,NQTY2,"sp:value",DOSE,FARY)
. D ADD^C0XF2N(C0SGRF,NQTY2,"sp:unit",UNIT,FARY)
. S NFREQ=$$ANONS^C0XF2N ; anonomous subject
. S NFREQ2=$$ANONS^C0XF2N ; anonomous subject
. D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:frequency",NFREQ,FARY)
. D ADD^C0XF2N(C0SGRF,NFREQ,"sp:ValueAndUnit",NFREQ2,FARY)
. N SCHED S SCHED=$G(C0SARY("med",ZI,"doses.dose@schedule"))
. I SCHED="" S SCHED="UNKNOWN"
. N SCHUNIT S SCHUNIT=$G(C0SARY("med",ZI,"doses.dose@route"))
. I SCHUNIT="" S SCHUNIT="UNKNOWN"
. D ADD^C0XF2N(C0SGRF,NFREQ2,"sp:value",SCHED,FARY)
. D ADD^C0XF2N(C0SGRF,NFREQ2,"sp:unit",SCHUNIT,FARY)
. D ADD^C0XF2N(C0SGRF,DSUBJ,"rdf:type","sp:CodedValue",FARY)
. D ADD^C0XF2N(C0SGRF,DSUBJ,"sp:code","rxnorm:"_RXNORM,FARY)
. D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"rdf:type","sp:Code",FARY)
. D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"dcterms:title",DNAME,FARY)
. D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"sp:system","rxnorm:",FARY)
. D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"dcterms:identifier",RXNORM,FARY)
. D ADD^C0XF2N(C0SGRF,DSUBJ,"dcterms:title",DNAME,FARY)
. D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:startDate",SDATE,FARY)
. D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"rdf:type","http://smartplatforms.org/terms/codes/RxNorm_Semantic",FARY)
. D BULKLOAD^C0XF2N(.C0XFDA)
. K C0XFDA
S GRTN=C0SGRF
q
;
RXNFN() Q 1130590011.001 ; RxNorm Concepts file number
;
RXCUI(ZVUID) ; EXTRINSIC WHICH RETURNS THE RXNORM CODE IF KNOWN OF
; THE VUID - RETURNS CODE^SYSTEM^VERSION TO USE IN THE CCR
N ZRSLT S ZRSLT=ZVUID_"^"_"VUID"_"^" ; DEFAULT
I $G(ZVUID)="" Q ""
I '$D(^C0P("RXN")) Q ZRSLT ; ERX NOT INSTALLED
N C0PIEN ; S C0PIEN=$$FIND1^DIC($$RXNFN,"","QX",ZVUID,"VUID")
S C0PIEN=$O(^C0P("RXN","VUID",ZVUID,"")) ;GPL FIX FOR MULTIPLES
N ZRXN S ZRXN=$$GET1^DIQ($$RXNFN,C0PIEN,.01)
S ZRXN=$$NISTMAP(ZRXN) ; CHANGE THE CODE IF NEEDED
I ZRXN'="" S ZRSLT=ZRXN_"^RXNORM^08AB_081201F"
Q ZRSLT
;
NISTMAP(ZRXN) ; EXTRINSIC WHICH MAPS SOME RXNORM NUMBERS TO
; CONFORM TO NIST REQUIREMENTS
;INPATIENT CERTIFICATION
I ZRXN=309362 S ZRXN=213169
I ZRXN=855318 S ZRXN=855320
I ZRXN=197361 S ZRXN=212549
;OUTPATIENT CERTIFICATION
I ZRXN=310534 S ZRXN=205875
I ZRXN=617312 S ZRXN=617314
I ZRXN=310429 S ZRXN=200801
I ZRXN=628953 S ZRXN=628958
I ZRXN=745679 S ZRXN=630208
I ZRXN=311564 S ZRXN=979334
I ZRXN=836343 S ZRXN=836370
Q ZRXN
;
C0SMED ; GPL - Smart Meds Processing ;2/22/12 17:05
;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 4
;Copyright 2012 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;
;This program is free software; you can redistribute it and/or modify
;it under the terms of the GNU General Public License as published by
;the Free Software Foundation; either version 2 of the License, or
;(at your option) any later version.
;
;This program is distributed in the hope that it will be useful,
;but WITHOUT ANY WARRANTY; without even the implied warranty of
;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;GNU General Public License for more details.
;
;You should have received a copy of the GNU General Public License along
;with this program; if not, write to the Free Software Foundation, Inc.,
;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
;
Q
;
MED(GRTN,C0SARY) ; GRTN, passed by reference,
; is the return name of the graph created. "" if none
; C0SARY is passed in by reference and is the NHIN array of meds
;
I $O(C0SARY("med",""))="" D Q ;
. I $D(DEBUG) W !,"No Meds"
S GRTN="" ; default to no meds
N C0SGRF
S C0SGRF="vistaSmart:"_ZPATID_"/"_ZTYP
I $D(DEBUG) W !,"Processing ",C0SGRF
D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
N MEDTRP ; MEDS TRIPLES
D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
N FARY S FARY="C0XFARY"
D USEFARY^C0XF2N(FARY)
D VOCINIT^C0XUTIL
;
N DUPCHK S DUPCHK="" ; check for no duplicates
N ZI S ZI=""
F S ZI=$O(C0SARY("med",ZI)) Q:ZI="" D ;
. N SDATE,SDTMP
. I $G(C0SARY("med",ZI,"vaStatus@value"))="EXPIRED" D Q ;
. . I $D(DEBUG) W !,"Expired Mediation, Skipping"
. I $G(COSARY("med",ZI,"vaType@value"))="I" D Q ;
. . I $D(DEBUG) W !,"Inpatient Med, skipping"
. I $G(COSARY("med",ZI,"vaType@value"))="V" D Q ;
. . I $D(DEBUG) W !,"IV Inpatient Med, skipping"
. ;
. S SDTMP=$G(C0SARY("med",ZI,"ordered@value"))
. I SDTMP="" D ;
. . S SDTMP=$G(C0SARY("med",ZI,"start@value"))
. S SDATE=$$FMTE^XLFDT(SDTMP,"7D") ; ordered date
. S SDATE=$TR(SDATE,"/","-") ; change slashes to hyphens
. I SDATE="" S SDATE="UNKNOWN"
. N DNAME,VUID,DCODE,RXNORM,SIG
. S DNAME=$G(C0SARY("med",ZI,"name@value"))
. I DNAME="" D ;
. . S DNAME=$G(C0SARY("med",ZI,"products.product@name"))
. S VUID=$G(C0SARY("med",ZI,"products.product.vaProduct@vuid"))
. S DCODE=$G(C0SARY("med",ZI,"products.product.vaProduct@code"))
. I DCODE="" S DCODE=$G(C0SARY("med",ZI,"id@value"))
. S RXNORM=$$RXCUI(VUID) ; look up RxNorm code
. I $P(RXNORM,"^",2)="RXNORM" D ;
. . S RXVER=$P(RXNORM,"^",3)
. . S RXNORM=$P(RXNORM,"^",1)
. E D Q ;
. . I $D(DEBUG) W !,"NO RXNORM NUMBER AVAILABLE"
. . I $D(DEBUG) W !,RXNORM
. I DNAME="" D Q ;
. . I $D(DEBUG) W !,"Error No Drug Name"
. S MEDGRF=C0SGRF_"/"_DCODE_"-"_$G(SDTMP)
. I +$D(DUPCHK(MEDGRF)) D Q ; NO DUPS ALLOWED
. . I $D(DEBUG) W !,"Found Duplicate Medication ",MEDGRF
. S DUPCHK(MEDGRF)=""
. I $D(DEBUG) D ;
. . W !,"Processing Medication ",MEDGRF
. . W !,DNAME
. . W !,RXNORM
. S SIG=$G(C0SARY("med",ZI,"sig"))
. I SIG["|" D ;
. . N SIGTMP
. . S SIGTMP=SIG
. . S SIG=$P(SIGTMP,"|",2) ; remove the drug name from the sig
. . I DNAME["FREE TXT" D ; eRx free text drug, get drug name from sig
. . . S DNAME=$P(SIGTMP,"|",1) ; eRx Drug name is stored as the first piece of the sig
. K C0XFARY
. D ADD^C0XF2N(C0SGRF,MEDGRF,"rdf:type","sp:Medication",FARY)
. D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:belongsTo",C0SGRF,FARY)
. N DSUBJ S DSUBJ=$$ANONS^C0XF2N ; anonomous subject
. D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:drugName",DSUBJ,FARY)
. I SIG'="" D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:instructions",SIG,FARY)
. N NQTY,NQTY2,NFREQ,NFREQ2
. S NQTY=$$ANONS^C0XF2N ; anonomous subject
. D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:quantity",NQTY,FARY)
. S NQTY2=$$ANONS^C0XF2N ; anonomous subject
. D ADD^C0XF2N(C0SGRF,NQTY,"sp:ValueAndUnit",NQTY2,FARY)
. N DOSE S DOSE=$G(C0SARY("med",ZI,"doses.dose@dose"))
. I DOSE="" S DOSE="UNKNOWN"
. N UNIT S UNIT=$G(C0SARY("med",ZI,"doses.dose@units"))
. I UNIT="" S UNIT="UNKNOWN"
. D ADD^C0XF2N(C0SGRF,NQTY2,"sp:value",DOSE,FARY)
. D ADD^C0XF2N(C0SGRF,NQTY2,"sp:unit",UNIT,FARY)
. S NFREQ=$$ANONS^C0XF2N ; anonomous subject
. S NFREQ2=$$ANONS^C0XF2N ; anonomous subject
. D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:frequency",NFREQ,FARY)
. D ADD^C0XF2N(C0SGRF,NFREQ,"sp:ValueAndUnit",NFREQ2,FARY)
. N SCHED S SCHED=$G(C0SARY("med",ZI,"doses.dose@schedule"))
. I SCHED="" S SCHED="UNKNOWN"
. N SCHUNIT S SCHUNIT=$G(C0SARY("med",ZI,"doses.dose@route"))
. I SCHUNIT="" S SCHUNIT="UNKNOWN"
. D ADD^C0XF2N(C0SGRF,NFREQ2,"sp:value",SCHED,FARY)
. D ADD^C0XF2N(C0SGRF,NFREQ2,"sp:unit",SCHUNIT,FARY)
. D ADD^C0XF2N(C0SGRF,DSUBJ,"rdf:type","sp:CodedValue",FARY)
. D ADD^C0XF2N(C0SGRF,DSUBJ,"sp:code","rxnorm:"_RXNORM,FARY)
. D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"rdf:type","sp:Code",FARY)
. D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"dcterms:title",DNAME,FARY)
. D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"sp:system","rxnorm:",FARY)
. D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"dcterms:identifier",RXNORM,FARY)
. D ADD^C0XF2N(C0SGRF,DSUBJ,"dcterms:title",DNAME,FARY)
. D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:startDate",SDATE,FARY)
. D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"rdf:type","http://smartplatforms.org/terms/codes/RxNorm_Semantic",FARY)
. D BULKLOAD^C0XF2N(.C0XFDA)
. K C0XFDA
S GRTN=C0SGRF
q
;
RXNFN() Q 1130590011.001 ; RxNorm Concepts file number
;
RXCUI(ZVUID) ; EXTRINSIC WHICH RETURNS THE RXNORM CODE IF KNOWN OF
; THE VUID - RETURNS CODE^SYSTEM^VERSION TO USE IN THE CCR
N ZRSLT S ZRSLT=ZVUID_"^"_"VUID"_"^" ; DEFAULT
I $G(ZVUID)="" Q ""
I '$D(^C0P("RXN")) Q ZRSLT ; ERX NOT INSTALLED
N C0PIEN ; S C0PIEN=$$FIND1^DIC($$RXNFN,"","QX",ZVUID,"VUID")
S C0PIEN=$O(^C0P("RXN","VUID",ZVUID,"")) ;GPL FIX FOR MULTIPLES
N ZRXN S ZRXN=$$GET1^DIQ($$RXNFN,C0PIEN,.01)
S ZRXN=$$NISTMAP(ZRXN) ; CHANGE THE CODE IF NEEDED
I ZRXN'="" S ZRSLT=ZRXN_"^RXNORM^08AB_081201F"
Q ZRSLT
;
NISTMAP(ZRXN) ; EXTRINSIC WHICH MAPS SOME RXNORM NUMBERS TO
; CONFORM TO NIST REQUIREMENTS
;INPATIENT CERTIFICATION
I ZRXN=309362 S ZRXN=213169
I ZRXN=855318 S ZRXN=855320
I ZRXN=197361 S ZRXN=212549
;OUTPATIENT CERTIFICATION
I ZRXN=310534 S ZRXN=205875
I ZRXN=617312 S ZRXN=617314
I ZRXN=310429 S ZRXN=200801
I ZRXN=628953 S ZRXN=628958
I ZRXN=745679 S ZRXN=630208
I ZRXN=311564 S ZRXN=979334
I ZRXN=836343 S ZRXN=836370
Q ZRXN
;

212
p/C0SMXMLB.m
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@ -1,106 +1,106 @@
MXMLBLD ;;ISF/RWF - Tool to build XML ;07/09/09 16:55 - Smart Container Ver.
;;8.0;KERNEL;;;Build 2
QUIT
;
;DOC - The top level tag
;DOCTYPE - Want to include a DOCTYPE node
;FLAG - Set to 'G' to store the output in the global ^TMP("MXMLBLD",$J,
START(DOC,DOCTYPE,FLAG,NO1ST) ;Call this once at the begining.
K ^TMP("MXMLBLD",$J)
S ^TMP("MXMLBLD",$J,"DOC")=DOC,^TMP("MXMLBLD",$J,"STK")=0
I $G(FLAG)["G" S ^TMP("MXMLBLD",$J,"CNT")=1
I $G(NO1ST)'=1 D OUTPUT($$XMLHDR)
D:$L($G(DOCTYPE)) OUTPUT("<!DOCTYPE "_DOCTYPE_">") D OUTPUT("<"_DOC_">")
Q
;
END ;Call this once to close out the document
D OUTPUT("</"_$G(^TMP("MXMLBLD",$J,"DOC"))_">")
I '$G(^TMP("MXMLBLD",$J,"CNT")) K ^TMP("MXMLBLD",$J)
K ^TMP("MXMLBLD",$J,"DOC"),^("CNT"),^("STK")
Q
;
ITEM(INDENT,TAG,ATT,VALUE) ;Output a Item
N I,X
S ATT=$G(ATT)
I '$D(VALUE) D OUTPUT($$BLS($G(INDENT))_"<"_TAG_$$ATT(.ATT)_" />") Q
D OUTPUT($$BLS($G(INDENT))_"<"_TAG_$$ATT(.ATT)_">"_$$CHARCHK(VALUE)_"</"_TAG_">")
Q
;DOITEM is a callback to output the lower level.
MULTI(INDENT,TAG,ATT,DOITEM) ;Output a Multipule
N I,X,S
S ATT=$G(ATT)
D PUSH($G(INDENT),TAG,.ATT)
D @DOITEM
D POP
Q
;
ATT(ATT) ;Output a string of attributes
I $D(ATT)<9 Q ""
N I,S,V
S S="",I=""
F S I=$O(ATT(I)) Q:I="" S S=S_" "_I_"="_$$Q(ATT(I))
Q S
;
Q(X) ;Add Quotes - Changed by gpl to use single instead of double quotes 6/11
;I X'[$C(34) Q $C(34)_X_$C(34)
I X'[$C(39) Q $C(39)_X_$C(39)
;N Q,Y,I,Z S Q=$C(34),(Y,Z)=""
N Q,Y,I,Z S Q=$C(39),(Y,Z)=""
F I=1:1:$L(X,Q)-1 S Y=Y_$P(X,Q,I)_Q_Q
S Y=Y_$P(X,Q,$L(X,Q))
;Q $C(34)_Y_$C(34)
Q $C(39)_Y_$C(39)
;
XMLHDR() ; -- provides current XML standard header
Q "<?xml version=""1.0"" encoding=""utf-8"" ?>"
;
OUTPUT(S) ;Output
N C S C=$G(^TMP("MXMLBLD",$J,"CNT"))
I C S ^TMP("MXMLBLD",$J,C)=S,^TMP("MXMLBLD",$J,"CNT")=C+1 Q
W S,!
Q
;
CHARCHK(STR) ; -- replace xml character limits with entities
N A,I,X,Y,Z,NEWSTR
S (Y,Z)=""
;IF STR["&" SET NEWSTR=STR DO SET STR=Y_Z
;. FOR X=1:1 SET Y=Y_$PIECE(NEWSTR,"&",X)_"&amp;",Z=$PIECE(STR,"&",X+1,999) QUIT:Z'["&"
I STR["&" F I=1:1:$L(STR,"&")-1 S STR=$P(STR,"&",1,I)_"&amp;"_$P(STR,"&",I+1,999)
I STR["<" F S STR=$PIECE(STR,"<",1)_"&lt;"_$PIECE(STR,"<",2,99) Q:STR'["<"
I STR[">" F S STR=$PIECE(STR,">",1)_"&gt;"_$PIECE(STR,">",2,99) Q:STR'[">"
I STR["'" F S STR=$PIECE(STR,"'",1)_"&apos;"_$PIECE(STR,"'",2,99) Q:STR'["'"
I STR["""" F S STR=$PIECE(STR,"""",1)_"&quot;"_$PIECE(STR,"""",2,99) Q:STR'[""""
;
S STR=$TR(STR,$C(0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31))
QUIT STR
;
COMMENT(VAL) ;Add Comments
N I,L
;I $D($G(VAL))=1 D OUTPUT("<!-- "_ATT_" -->") Q
I $D(VAL) D OUTPUT("<!-- "_ATT_" -->") Q ;CHANGED BY GPL FOR GTM
S I="",L="<!--"
F S I=$O(ATT(I)) Q:I="" D OUTPUT(L_ATT(I)) S L=""
D OUTPUT("-->")
Q
;
PUSH(INDENT,TAG,ATT) ;Write a TAG and save.
N CNT
S ATT=$G(ATT)
D OUTPUT($$BLS($G(INDENT))_"<"_TAG_$$ATT(.ATT)_">")
S CNT=$G(^TMP("MXMLBLD",$J,"STK"))+1,^TMP("MXMLBLD",$J,"STK")=CNT,^TMP("MXMLBLD",$J,"STK",CNT)=INDENT_"^"_TAG
Q
;
POP ;Write last pushed tag and pop
N CNT,TAG,INDENT,X
S CNT=$G(^TMP("MXMLBLD",$J,"STK")),X=^TMP("MXMLBLD",$J,"STK",CNT),^TMP("MXMLBLD",$J,"STK")=CNT-1
S INDENT=+X,TAG=$P(X,"^",2)
D OUTPUT($$BLS(INDENT)_"</"_TAG_">")
Q
;
BLS(I) ;Return INDENT string
N S
S S="",I=$G(I) S:I>0 $P(S," ",I)=" "
Q S
;
INDENT() ;Renturn indent level
Q +$G(^TMP("MXMLBLD",$J,"STK"))
MXMLBLD ;;ISF/RWF - Tool to build XML ;07/09/09 16:55 - Smart Container Ver.
;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 4
QUIT
;
;DOC - The top level tag
;DOCTYPE - Want to include a DOCTYPE node
;FLAG - Set to 'G' to store the output in the global ^TMP("MXMLBLD",$J,
START(DOC,DOCTYPE,FLAG,NO1ST) ;Call this once at the begining.
K ^TMP("MXMLBLD",$J)
S ^TMP("MXMLBLD",$J,"DOC")=DOC,^TMP("MXMLBLD",$J,"STK")=0
I $G(FLAG)["G" S ^TMP("MXMLBLD",$J,"CNT")=1
I $G(NO1ST)'=1 D OUTPUT($$XMLHDR)
D:$L($G(DOCTYPE)) OUTPUT("<!DOCTYPE "_DOCTYPE_">") D OUTPUT("<"_DOC_">")
Q
;
END ;Call this once to close out the document
D OUTPUT("</"_$G(^TMP("MXMLBLD",$J,"DOC"))_">")
I '$G(^TMP("MXMLBLD",$J,"CNT")) K ^TMP("MXMLBLD",$J)
K ^TMP("MXMLBLD",$J,"DOC"),^("CNT"),^("STK")
Q
;
ITEM(INDENT,TAG,ATT,VALUE) ;Output a Item
N I,X
S ATT=$G(ATT)
I '$D(VALUE) D OUTPUT($$BLS($G(INDENT))_"<"_TAG_$$ATT(.ATT)_" />") Q
D OUTPUT($$BLS($G(INDENT))_"<"_TAG_$$ATT(.ATT)_">"_$$CHARCHK(VALUE)_"</"_TAG_">")
Q
;DOITEM is a callback to output the lower level.
MULTI(INDENT,TAG,ATT,DOITEM) ;Output a Multipule
N I,X,S
S ATT=$G(ATT)
D PUSH($G(INDENT),TAG,.ATT)
D @DOITEM
D POP
Q
;
ATT(ATT) ;Output a string of attributes
I $D(ATT)<9 Q ""
N I,S,V
S S="",I=""
F S I=$O(ATT(I)) Q:I="" S S=S_" "_I_"="_$$Q(ATT(I))
Q S
;
Q(X) ;Add Quotes - Changed by gpl to use single instead of double quotes 6/11
;I X'[$C(34) Q $C(34)_X_$C(34)
I X'[$C(39) Q $C(39)_X_$C(39)
;N Q,Y,I,Z S Q=$C(34),(Y,Z)=""
N Q,Y,I,Z S Q=$C(39),(Y,Z)=""
F I=1:1:$L(X,Q)-1 S Y=Y_$P(X,Q,I)_Q_Q
S Y=Y_$P(X,Q,$L(X,Q))
;Q $C(34)_Y_$C(34)
Q $C(39)_Y_$C(39)
;
XMLHDR() ; -- provides current XML standard header
Q "<?xml version=""1.0"" encoding=""utf-8"" ?>"
;
OUTPUT(S) ;Output
N C S C=$G(^TMP("MXMLBLD",$J,"CNT"))
I C S ^TMP("MXMLBLD",$J,C)=S,^TMP("MXMLBLD",$J,"CNT")=C+1 Q
W S,!
Q
;
CHARCHK(STR) ; -- replace xml character limits with entities
N A,I,X,Y,Z,NEWSTR
S (Y,Z)=""
;IF STR["&" SET NEWSTR=STR DO SET STR=Y_Z
;. FOR X=1:1 SET Y=Y_$PIECE(NEWSTR,"&",X)_"&amp;",Z=$PIECE(STR,"&",X+1,999) QUIT:Z'["&"
I STR["&" F I=1:1:$L(STR,"&")-1 S STR=$P(STR,"&",1,I)_"&amp;"_$P(STR,"&",I+1,999)
I STR["<" F S STR=$PIECE(STR,"<",1)_"&lt;"_$PIECE(STR,"<",2,99) Q:STR'["<"
I STR[">" F S STR=$PIECE(STR,">",1)_"&gt;"_$PIECE(STR,">",2,99) Q:STR'[">"
I STR["'" F S STR=$PIECE(STR,"'",1)_"&apos;"_$PIECE(STR,"'",2,99) Q:STR'["'"
I STR["""" F S STR=$PIECE(STR,"""",1)_"&quot;"_$PIECE(STR,"""",2,99) Q:STR'[""""
;
S STR=$TR(STR,$C(0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31))
QUIT STR
;
COMMENT(VAL) ;Add Comments
N I,L
;I $D($G(VAL))=1 D OUTPUT("<!-- "_ATT_" -->") Q
I $D(VAL) D OUTPUT("<!-- "_ATT_" -->") Q ;CHANGED BY GPL FOR GTM
S I="",L="<!--"
F S I=$O(ATT(I)) Q:I="" D OUTPUT(L_ATT(I)) S L=""
D OUTPUT("-->")
Q
;
PUSH(INDENT,TAG,ATT) ;Write a TAG and save.
N CNT
S ATT=$G(ATT)
D OUTPUT($$BLS($G(INDENT))_"<"_TAG_$$ATT(.ATT)_">")
S CNT=$G(^TMP("MXMLBLD",$J,"STK"))+1,^TMP("MXMLBLD",$J,"STK")=CNT,^TMP("MXMLBLD",$J,"STK",CNT)=INDENT_"^"_TAG
Q
;
POP ;Write last pushed tag and pop
N CNT,TAG,INDENT,X
S CNT=$G(^TMP("MXMLBLD",$J,"STK")),X=^TMP("MXMLBLD",$J,"STK",CNT),^TMP("MXMLBLD",$J,"STK")=CNT-1
S INDENT=+X,TAG=$P(X,"^",2)
D OUTPUT($$BLS(INDENT)_"</"_TAG_">")
Q
;
BLS(I) ;Return INDENT string
N S
S S="",I=$G(I) S:I>0 $P(S," ",I)=" "
Q S
;
INDENT() ;Renturn indent level
Q +$G(^TMP("MXMLBLD",$J,"STK"))

648
p/C0SNHIN.m
View File

@ -1,324 +1,324 @@
C0SNHIN ; GPL - Smart Container - OUTPUT OF NHINV ROUTINES;6/3/11 17:05
;;0.1;C0S;nopatch;noreleasedate;Build 2
;Copyright 2011-2012 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;
;This program is free software; you can redistribute it and/or modify
;it under the terms of the GNU General Public License as published by
;the Free Software Foundation; either version 2 of the License, or
;(at your option) any later version.
;
;This program is distributed in the hope that it will be useful,
;but WITHOUT ANY WARRANTY; without even the implied warranty of
;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;GNU General Public License for more details.
;
;You should have received a copy of the GNU General Public License along
;with this program; if not, write to the Free Software Foundation, Inc.,
;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
;
Q
EN(ZRTN,ZDFN,ZPART,KEEP) ; GENERATE AN NHIN ARRAY FOR A PATIENT
;
K GARY,GNARY,GIDX,C0SDOCID
K ZRTN
N GN
K ^TMP("NHINV",$J) ; CLEAN UP FROM LAST CALL
K ^TMP("MXMLDOM",$J) ; CLEAN UP DOM
K ^TMP("MXMLERR",$J) ; CLEAN UP MXML ERRORS
D GET^C0SNHINV(.GN,ZDFN,ZPART) ; CALL NHINV ROUTINES TO PULL XML
S GN=$P(GN,")",1)_")" ; CUT OFF THE REST OF LINE PROTOCOL
S C0SDOCID=$$PARSE(GN,"NHINARRAY") ; PARSE WITH MXML
D DOMO^C0SDOM(C0SDOCID,"/","ZRTN","GIDX","GARY",,"/results/") ; BLD ARRAYS
I '$G(KEEP) K GIDX,GARY ; GET RID OF THE ARRAYS UNLESS KEEP=1
;D PROCESS("ZRTN",GN,"/result/",$G(KEEP))
Q
;
PQRI(ZOUT,KEEP) ; RETURN THE NHIN ARRAY FOR THE PQRI XML TEMPLATE
;
N ZG
S ZG=$NA(^TMP("PQRIXML",$J))
K @ZG
D GETXML^C0SMXP(ZG,"PQRIXML") ; GET THE XML FROM C0S MISC XML
N C0SDOCID
S C0SDOCID=$$PARSE^C0SDOM(ZG,"PQRIXML") ; PARSE THE XML
D DOMO^C0SDOM(C0SDOCID,"/","ZOUT","GIDX","GARY",,"//submission") ; BLD ARRAYS
I '$G(KEEP) K GIDX,GARY ; GET RID OF THE ARRAYS UNLESS KEEP=1
Q
;
PQRI2(ZRTN) ; RETURN THE NHIN ARRAY FOR PQRI ONE MEASURE
;
;N GG
D GETXML^C0SMXP("GG","PQRI ONE MEASURE")
D PROCESS(ZRTN,"GG","root",1)
Q
;
PROCESS(ZRSLT,ZXML,ZREDUCE,KEEP) ; PARSE AND RUN DOMO ON XML
; ZRTN IS PASSED BY REFERENCE
; ZXML IS PASSED BY NAME
; IF KEEP IS 1, GARY AND GIDX ARE NOT KILLED
;
N GN
S GN=$NA(^TMP("C0SPROCESS",$J))
K @GN
M @GN=@ZXML
S C0SDOCID=$$PARSE(GN,"NHINARRAY") ; PARSE WITH MXML
K @GN
D DOMO^C0SDOM(C0SDOCID,"/","ZRSLT","GIDX","GARY",,$G(ZREDUCE)) ; BLD ARRAYS
I '$G(KEEP) K GIDX,GARY ; GET RID OF THE ARRAYS UNLESS KEEP=1
Q
;
LOADSMRT ;
;
K ^GPL("SMART")
S GN=$NA(^GPL("SMART",1))
I $$FTG^%ZISH("/home/george/","alex-lewis2.xml",GN,2) W !,"SMART FILE LOADED"
Q
;
SMART ; TRY IT WITH SMART
;
S GN=$NA(^GPL("SMART"))
;K ^TMP("MXMLDOM",$J)
K ^TMP("MXMLERR",$J)
S C0SDOCID=$$PARSE(GN,"SMART")
D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"//rdf:RDF/")
;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
Q
;
CCR ; TRY IT WITH A CCR
;
S GN=$NA(^GPL("CCR"))
;K ^TMP("MXMLDOM",$J)
K ^TMP("MXMLERR",$J)
S C0SDOCID=$$PARSE(GN,"CCR")
D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"//ContinuityOfCareRecord/Body/")
;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
Q
;
MED ; TRY IT WITH A CCR MED SECTION
;
S GN=$NA(^GPL("MED"))
K ^TMP("MXMLDOM",$J)
K ^TMP("MXMLERR",$J)
S C0SDOCID=$$PARSE(GN,"MED")
D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"//Medications/")
;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
Q
;
CCD ; TRY IT WITH A CCD
;
S GN=$NA(^GPL("CCD"))
;K ^TMP("MXMLDOM",$J)
K ^TMP("MXMLERR",$J)
S C0SDOCID=$$PARSE(GN,"CCD")
D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"//ClinicalDocument/component/structuredBody/")
;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
Q
;
TEST1 ; TEST NHINV OUTPUT IN ^GPL("NIHIN")
; PARSED WITH MXML
; RUN THROUGH XPATH
K GARY,GIDX,C0SDOCID
S GN=$NA(^GPL("NHIN"))
;S GN=$NA(^GPL("DOMI"))
S C0SDOCID=$$PARSE(GN,"GPLTEST")
D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"/results/")
K ^GPL("GNARY")
M ^GPL("GNARY")=GNARY
Q
;
TEST2 ; PUT GNARY THROUGH DOMI AND STORE XML IN ^GPL("DOMI")
;
S GN=$NA(^GPL("GNARY"))
S C0SDOCID=$$DOMI^C0SDOM(GN,,"results")
D OUTXML^C0SDOM("G",C0SDOCID)
K ^GPL("DOMI")
M ^GPL("DOMI")=G
Q
;
TEST3 ; TEST NHINV OUTPUT IN ^GPL("NIHIN")
; PARSED WITH MXML
; RUN THROUGH XPATH
K GARY,GIDX,C0SDOCID
;S GN=$NA(^GPL("NHIN"))
S GN=$NA(^GPL("DOMI"))
S C0SDOCID=$$PARSE(GN,"GPLTEST")
D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"/results/")
Q
;
DOMO(ZOID,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; RECURSIVE ROUTINE TO POPULATE
; THE XPATH INDEX ZXIDX, PASSED BY NAME
; THE XPATH ARRAY XPARY, PASSED BY NAME
; ZOID IS THE STARTING OID
; ZPATH IS THE STARTING XPATH, USUALLY "/"
; ZNUM IS THE MULTIPLE NUMBER [x], USUALLY NULL WHEN ON THE TOP NODE
; ZREDUX IS THE XPATH REDUCTION STRING, TAKEN OUT OF EACH XPATH IF PRESENT
I $G(ZREDUX)="" S ZREDUX=""
N NEWPATH,NARY ; NEWPATH IS AN XPATH NARY IS AN NHIN MUMPS ARRAY
N NEWNUM S NEWNUM=""
I $G(ZNUM)>0 S NEWNUM="["_ZNUM_"]"
S NEWPATH=ZPATH_"/"_$$TAG(ZOID)_NEWNUM ; CREATE THE XPATH FOR THIS NODE
I $G(ZREDUX)'="" D ; REDUX PROVIDED?
. N GT S GT=$P(NEWPATH,ZREDUX,2)
. I GT'="" S NEWPATH=GT
S @ZXIDX@(NEWPATH)=ZOID ; ADD THE XPATH FOR THIS NODE TO THE XPATH INDEX
N GA D ATT("GA",ZOID) ; GET ATTRIBUTES FOR THIS NODE
I $D(GA) D ; PROCESS THE ATTRIBUTES
. N ZI S ZI=""
. F S ZI=$O(GA(ZI)) Q:ZI="" D ; FOR EACH ATTRIBUTE
. . N ZP S ZP=NEWPATH_"/"_ZI ; PATH FOR ATTRIBUTE
. . S @ZXPARY@(ZP)=GA(ZI) ; ADD THE ATTRIBUTE XPATH TO THE XP ARRAY
. . I GA(ZI)'="" D ADDNARY(ZP,GA(ZI)) ; ADD THE NHIN ARRAY VALUE
N GD D DATA("GD",ZOID) ; SEE IF THERE IS DATA FOR THIS NODE
I $D(GD(2)) D ;
. M @ZXPARY@(NEWPATH)=GD ; IF MULITPLE DATA MERGE TO THE ARRAY
E I $D(GD(1)) D ;
. S @ZXPARY@(NEWPATH)=GD(1) ; IF SINGLE VALUE, ADD TO ARRAY
. I GD(1)'="" D ADDNARY(NEWPATH,GD(1)) ; ADD TO NHIN ARRAY
N ZFRST S ZFRST=$$FIRST(ZOID) ; SET FIRST CHILD
I ZFRST'=0 D ; THERE IS A CHILD
. N ZNUM
. N ZMULT S ZMULT=$$ISMULT(ZFRST) ; IS FIRST CHILD A MULTIPLE
. D DOMO(ZFRST,NEWPATH,ZNARY,ZXIDX,ZXPARY,$S(ZMULT:1,1:""),ZREDUX) ; THE CHILD
N GNXT S GNXT=$$NXTSIB(ZOID)
I $$TAG(GNXT)'=$$TAG(ZOID) S ZNUM="" ; RESET COUNTING AFTER MULTIPLES
I GNXT'=0 D ;
. N ZMULT S ZMULT=$$ISMULT(GNXT) ; IS THE SIBLING A MULTIPLE?
. I (ZNUM="")&(ZMULT) D ; SIBLING IS FIRST OF MULTIPLES
. . N ZNUM S ZNUM=1 ;
. . D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; DO NEXT SIB
. E D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,$S(ZNUM>0:ZNUM+1,1:""),ZREDUX) ; SIB
Q
;
ADDNARY(ZXP,ZVALUE) ; ADD AN NHIN ARRAY VALUE TO ZNARY
;
N ZZI,ZZJ,ZZN
S ZZI=$P(ZXP,"/",1) ; FIRST PIECE OF XPATH ARRAY
I ZZI="" Q ; DON'T ADD THIS ONE .. PROBABLY THE //results NODE
S ZZJ=$P(ZXP,ZZI_"/",2) ; REST OF XPATH ARRAY
S ZZJ=$TR(ZZJ,"/",".") ; REPLACE / WITH .
I ZZI'["]" D ; A SINGLETON
. S ZZN=1
E D ; THERE IS AN [x] OCCURANCE
. S ZZN=$P($P(ZZI,"[",2),"]",1) ; PULL OUT THE OCCURANCE
. S ZZI=$P(ZZI,"[",1) ; TAKE OUT THE [X]
I ZZJ'="" S @ZNARY@(ZZI,ZZN,ZZJ)=ZVALUE
Q
;
PARSE(INXML,INDOC) ;CALL THE MXML PARSER ON INXML, PASSED BY NAME
; INDOC IS PASSED AS THE DOCUMENT NAME - DON'T KNOW WHERE TO STORE THIS NOW
; EXTRINSIC WHICH RETURNS THE DOCID ASSIGNED BY MXML
;Q $$EN^MXMLDOM(INXML)
Q $$EN^MXMLDOM(INXML,"W")
;
ISMULT(ZOID) ; RETURN TRUE IF ZOID IS ONE OF A MULTIPLE
N ZN
;I $$TAG(ZOID)["entry" B
S ZN=$$NXTSIB(ZOID)
I ZN'="" Q $$TAG(ZOID)=$$TAG(ZN) ; IF TAG IS THE SAME AS NEXT SIB TAG
Q 0
;
FIRST(ZOID) ;RETURNS THE OID OF THE FIRST CHILD OF ZOID
Q $$CHILD^MXMLDOM(C0SDOCID,ZOID)
;
PARENT(ZOID) ;RETURNS THE OID OF THE PARENT OF ZOID
Q $$PARENT^MXMLDOM(C0SDOCID,ZOID)
;
ATT(RTN,NODE) ;GET ATTRIBUTES FOR ZOID
S HANDLE=C0SDOCID
K @RTN
D GETTXT^MXMLDOM("A")
Q
;
TAG(ZOID) ; RETURNS THE XML TAG FOR THE NODE
;I ZOID=149 B ;GPLTEST
N X,Y
S Y=""
S X=$G(C0SCBK("TAG")) ;IS THERE A CALLBACK FOR THIS ROUTINE
I X'="" X X ; EXECUTE THE CALLBACK, SHOULD SET Y
I Y="" S Y=$$NAME^MXMLDOM(C0SDOCID,ZOID)
Q Y
;
NXTSIB(ZOID) ; RETURNS THE NEXT SIBLING
Q $$SIBLING^MXMLDOM(C0SDOCID,ZOID)
;
DATA(ZT,ZOID) ; RETURNS DATA FOR THE NODE
;N ZT,ZN S ZT=""
;S C0SDOM=$NA(^TMP("MXMLDOM",$J,C0SDOCID))
;Q $G(@C0SDOM@(ZOID,"T",1))
S ZN=$$TEXT^MXMLDOM(C0SDOCID,ZOID,ZT)
Q
;
OUTXML(ZRTN,INID) ; USES C0SMXMLB (MXMLBLD) TO OUTPUT XML FROM AN MXMLDOM
;
S C0SDOCID=INID
D START^C0SMXMLB($$TAG(1),,"G")
D NDOUT($$FIRST(1))
D END^C0SMXMLB ;END THE DOCUMENT
M @ZRTN=^TMP("MXMLBLD",$J)
K ^TMP("MXMLBLD",$J)
Q
;
NDOUT(ZOID) ;CALLBACK ROUTINE - IT IS RECURSIVE
N ZI S ZI=$$FIRST(ZOID)
I ZI'=0 D ; THERE IS A CHILD
. N ZATT D ATT("ZATT",ZOID) ; THESE ARE THE ATTRIBUTES MOVED TO ZATT
. D MULTI^C0SMXMLB("",$$TAG(ZOID),.ZATT,"NDOUT^C0SMXML(ZI)") ;HAVE CHILDREN
E D ; NO CHILD - IF NO CHILDREN, A NODE HAS DATA, IS AN ENDPOINT
. ;W "DOING",ZOID,!
. N ZD D DATA("ZD",ZOID) ;NODES WITHOUT CHILDREN HAVE DATA
. N ZATT D ATT("ZATT",ZOID) ;ATTRIBUTES
. D ITEM^C0SMXMLB("",$$TAG(ZOID),.ZATT,$G(ZD(1))) ;NO CHILDREN
I $$NXTSIB(ZOID)'=0 D ; THERE IS A SIBLING
. D NDOUT($$NXTSIB(ZOID)) ;RECURSE FOR SIBLINGS
Q
;
WNHIN(ZDFN) ; WRITES THE XML OUTPUT OF GET^NHINV TO AN XML FILE
;
N GN,GN2
D GET^NHINV(.GN,ZDFN) ; EXTRACT THE XML
S GN2=$NA(@GN@(1))
W $$OUTPUT^C0SXPATH(GN2,"nhin_"_ZDFN_".xml","/home/wvehr3-09/")
Q
;
TESTNARY ; TEST MAKING A NHIN ARRAY
N ZI S ZI=""
N ZH ; DOM HANDLE
D TEST1 ; PARSE AN NHIN RESULT INTO THE DOM
S ZH=C0SDOCID ; SET THE HANDLE
N ZD S ZD=$NA(^TMP("MXMLDOM",$J,ZH))
F S ZI=$O(@ZD@(ZI)) Q:ZI="" D ; FOR EACH NODE
. N ZATT
. D MNARY(.ZATT,ZH,ZI)
. N ZPRE,ZN
. S ZPRE=$$PRE(ZI)
. S ZN=$P(ZPRE,",",2)
. S ZPRE=$P(ZPRE,",",1)
. ;I $D(ZATT) ZWR ZATT
. N ZJ S ZJ=""
. F S ZJ=$O(ZATT(ZJ)) Q:ZJ="" D ; FOR EACH ATTRIBUTE
. . W ZPRE_"["_ZN_"]"_$$TAG(ZI)_"."_ZJ_"="_ZATT(ZJ),!
. . S GOUT(ZPRE,ZN,$$TAG(ZI)_"."_ZJ)=ZATT(ZJ)
Q
;
PRE(ZNODE) ; EXTRINSIC WHICH RETURNS THE PREFIX FOR A NODE
;
N GI,GI2,GPT,GJ,GN
S GI=$$PARENT(ZNODE) ; PARENT NODE
I GI=0 Q "" ; NO PARENT
S GPT=$$TAG(GI) ; TAG OF PARENT
S GI2=$$PARENT(GI) ; PARENT OF PARENT
I (GI2'=0)&($$TAG(GI2)'="results") S GPT=$$TAG(GI2)_"."_GPT
S GJ=$$FIRST(GI) ; NODE OF FIRST SIB
I GJ=ZNODE Q:$$TAG(GI)_",1"
F GN=2:1 Q:GJ=ZNODE D ;
. S GJ=$$NXTSIB(GJ) ; NEXT SIBLING
Q GPT_","_GN
;
MNARY(ZRTN,ZHANDLE,ZOID) ; MAKE A NHIN ARRAY FROM A DOM NODE
; RETURNED IN ZRTN, PASSED BY REFERENCE
; ZHANDLE IS THE DOM DOCUMENT ID
; ZOID IS THE DOM NODE
D ATT("ZRTN",ZOID)
Q
;
C0SNHIN ; GPL - Smart Container - OUTPUT OF NHINV ROUTINES;6/3/11 17:05
;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 4
;Copyright 2011-2012 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;
;This program is free software; you can redistribute it and/or modify
;it under the terms of the GNU General Public License as published by
;the Free Software Foundation; either version 2 of the License, or
;(at your option) any later version.
;
;This program is distributed in the hope that it will be useful,
;but WITHOUT ANY WARRANTY; without even the implied warranty of
;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;GNU General Public License for more details.
;
;You should have received a copy of the GNU General Public License along
;with this program; if not, write to the Free Software Foundation, Inc.,
;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
;
Q
EN(ZRTN,ZDFN,ZPART,KEEP) ; GENERATE AN NHIN ARRAY FOR A PATIENT
;
K GARY,GNARY,GIDX,C0SDOCID
K ZRTN
N GN
K ^TMP("NHINV",$J) ; CLEAN UP FROM LAST CALL
K ^TMP("MXMLDOM",$J) ; CLEAN UP DOM
K ^TMP("MXMLERR",$J) ; CLEAN UP MXML ERRORS
D GET^C0SNHINV(.GN,ZDFN,ZPART) ; CALL NHINV ROUTINES TO PULL XML
S GN=$P(GN,")",1)_")" ; CUT OFF THE REST OF LINE PROTOCOL
S C0SDOCID=$$PARSE(GN,"NHINARRAY") ; PARSE WITH MXML
D DOMO^C0SDOM(C0SDOCID,"/","ZRTN","GIDX","GARY",,"/results/") ; BLD ARRAYS
I '$G(KEEP) K GIDX,GARY ; GET RID OF THE ARRAYS UNLESS KEEP=1
;D PROCESS("ZRTN",GN,"/result/",$G(KEEP))
Q
;
PQRI(ZOUT,KEEP) ; RETURN THE NHIN ARRAY FOR THE PQRI XML TEMPLATE
;
N ZG
S ZG=$NA(^TMP("PQRIXML",$J))
K @ZG
D GETXML^C0SMXP(ZG,"PQRIXML") ; GET THE XML FROM C0S MISC XML
N C0SDOCID
S C0SDOCID=$$PARSE^C0SDOM(ZG,"PQRIXML") ; PARSE THE XML
D DOMO^C0SDOM(C0SDOCID,"/","ZOUT","GIDX","GARY",,"//submission") ; BLD ARRAYS
I '$G(KEEP) K GIDX,GARY ; GET RID OF THE ARRAYS UNLESS KEEP=1
Q
;
PQRI2(ZRTN) ; RETURN THE NHIN ARRAY FOR PQRI ONE MEASURE
;
;N GG
D GETXML^C0SMXP("GG","PQRI ONE MEASURE")
D PROCESS(ZRTN,"GG","root",1)
Q
;
PROCESS(ZRSLT,ZXML,ZREDUCE,KEEP) ; PARSE AND RUN DOMO ON XML
; ZRTN IS PASSED BY REFERENCE
; ZXML IS PASSED BY NAME
; IF KEEP IS 1, GARY AND GIDX ARE NOT KILLED
;
N GN
S GN=$NA(^TMP("C0SPROCESS",$J))
K @GN
M @GN=@ZXML
S C0SDOCID=$$PARSE(GN,"NHINARRAY") ; PARSE WITH MXML
K @GN
D DOMO^C0SDOM(C0SDOCID,"/","ZRSLT","GIDX","GARY",,$G(ZREDUCE)) ; BLD ARRAYS
I '$G(KEEP) K GIDX,GARY ; GET RID OF THE ARRAYS UNLESS KEEP=1
Q
;
LOADSMRT ;
;
K ^GPL("SMART")
S GN=$NA(^GPL("SMART",1))
I $$FTG^%ZISH("/home/george/","alex-lewis2.xml",GN,2) W !,"SMART FILE LOADED"
Q
;
SMART ; TRY IT WITH SMART
;
S GN=$NA(^GPL("SMART"))
;K ^TMP("MXMLDOM",$J)
K ^TMP("MXMLERR",$J)
S C0SDOCID=$$PARSE(GN,"SMART")
D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"//rdf:RDF/")
;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
Q
;
CCR ; TRY IT WITH A CCR
;
S GN=$NA(^GPL("CCR"))
;K ^TMP("MXMLDOM",$J)
K ^TMP("MXMLERR",$J)
S C0SDOCID=$$PARSE(GN,"CCR")
D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"//ContinuityOfCareRecord/Body/")
;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
Q
;
MED ; TRY IT WITH A CCR MED SECTION
;
S GN=$NA(^GPL("MED"))
K ^TMP("MXMLDOM",$J)
K ^TMP("MXMLERR",$J)
S C0SDOCID=$$PARSE(GN,"MED")
D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"//Medications/")
;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
Q
;
CCD ; TRY IT WITH A CCD
;
S GN=$NA(^GPL("CCD"))
;K ^TMP("MXMLDOM",$J)
K ^TMP("MXMLERR",$J)
S C0SDOCID=$$PARSE(GN,"CCD")
D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"//ClinicalDocument/component/structuredBody/")
;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
Q
;
TEST1 ; TEST NHINV OUTPUT IN ^GPL("NIHIN")
; PARSED WITH MXML
; RUN THROUGH XPATH
K GARY,GIDX,C0SDOCID
S GN=$NA(^GPL("NHIN"))
;S GN=$NA(^GPL("DOMI"))
S C0SDOCID=$$PARSE(GN,"GPLTEST")
D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"/results/")
K ^GPL("GNARY")
M ^GPL("GNARY")=GNARY
Q
;
TEST2 ; PUT GNARY THROUGH DOMI AND STORE XML IN ^GPL("DOMI")
;
S GN=$NA(^GPL("GNARY"))
S C0SDOCID=$$DOMI^C0SDOM(GN,,"results")
D OUTXML^C0SDOM("G",C0SDOCID)
K ^GPL("DOMI")
M ^GPL("DOMI")=G
Q
;
TEST3 ; TEST NHINV OUTPUT IN ^GPL("NIHIN")
; PARSED WITH MXML
; RUN THROUGH XPATH
K GARY,GIDX,C0SDOCID
;S GN=$NA(^GPL("NHIN"))
S GN=$NA(^GPL("DOMI"))
S C0SDOCID=$$PARSE(GN,"GPLTEST")
D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"/results/")
Q
;
DOMO(ZOID,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; RECURSIVE ROUTINE TO POPULATE
; THE XPATH INDEX ZXIDX, PASSED BY NAME
; THE XPATH ARRAY XPARY, PASSED BY NAME
; ZOID IS THE STARTING OID
; ZPATH IS THE STARTING XPATH, USUALLY "/"
; ZNUM IS THE MULTIPLE NUMBER [x], USUALLY NULL WHEN ON THE TOP NODE
; ZREDUX IS THE XPATH REDUCTION STRING, TAKEN OUT OF EACH XPATH IF PRESENT
I $G(ZREDUX)="" S ZREDUX=""
N NEWPATH,NARY ; NEWPATH IS AN XPATH NARY IS AN NHIN MUMPS ARRAY
N NEWNUM S NEWNUM=""
I $G(ZNUM)>0 S NEWNUM="["_ZNUM_"]"
S NEWPATH=ZPATH_"/"_$$TAG(ZOID)_NEWNUM ; CREATE THE XPATH FOR THIS NODE
I $G(ZREDUX)'="" D ; REDUX PROVIDED?
. N GT S GT=$P(NEWPATH,ZREDUX,2)
. I GT'="" S NEWPATH=GT
S @ZXIDX@(NEWPATH)=ZOID ; ADD THE XPATH FOR THIS NODE TO THE XPATH INDEX
N GA D ATT("GA",ZOID) ; GET ATTRIBUTES FOR THIS NODE
I $D(GA) D ; PROCESS THE ATTRIBUTES
. N ZI S ZI=""
. F S ZI=$O(GA(ZI)) Q:ZI="" D ; FOR EACH ATTRIBUTE
. . N ZP S ZP=NEWPATH_"/"_ZI ; PATH FOR ATTRIBUTE
. . S @ZXPARY@(ZP)=GA(ZI) ; ADD THE ATTRIBUTE XPATH TO THE XP ARRAY
. . I GA(ZI)'="" D ADDNARY(ZP,GA(ZI)) ; ADD THE NHIN ARRAY VALUE
N GD D DATA("GD",ZOID) ; SEE IF THERE IS DATA FOR THIS NODE
I $D(GD(2)) D ;
. M @ZXPARY@(NEWPATH)=GD ; IF MULITPLE DATA MERGE TO THE ARRAY
E I $D(GD(1)) D ;
. S @ZXPARY@(NEWPATH)=GD(1) ; IF SINGLE VALUE, ADD TO ARRAY
. I GD(1)'="" D ADDNARY(NEWPATH,GD(1)) ; ADD TO NHIN ARRAY
N ZFRST S ZFRST=$$FIRST(ZOID) ; SET FIRST CHILD
I ZFRST'=0 D ; THERE IS A CHILD
. N ZNUM
. N ZMULT S ZMULT=$$ISMULT(ZFRST) ; IS FIRST CHILD A MULTIPLE
. D DOMO(ZFRST,NEWPATH,ZNARY,ZXIDX,ZXPARY,$S(ZMULT:1,1:""),ZREDUX) ; THE CHILD
N GNXT S GNXT=$$NXTSIB(ZOID)
I $$TAG(GNXT)'=$$TAG(ZOID) S ZNUM="" ; RESET COUNTING AFTER MULTIPLES
I GNXT'=0 D ;
. N ZMULT S ZMULT=$$ISMULT(GNXT) ; IS THE SIBLING A MULTIPLE?
. I (ZNUM="")&(ZMULT) D ; SIBLING IS FIRST OF MULTIPLES
. . N ZNUM S ZNUM=1 ;
. . D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; DO NEXT SIB
. E D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,$S(ZNUM>0:ZNUM+1,1:""),ZREDUX) ; SIB
Q
;
ADDNARY(ZXP,ZVALUE) ; ADD AN NHIN ARRAY VALUE TO ZNARY
;
N ZZI,ZZJ,ZZN
S ZZI=$P(ZXP,"/",1) ; FIRST PIECE OF XPATH ARRAY
I ZZI="" Q ; DON'T ADD THIS ONE .. PROBABLY THE //results NODE
S ZZJ=$P(ZXP,ZZI_"/",2) ; REST OF XPATH ARRAY
S ZZJ=$TR(ZZJ,"/",".") ; REPLACE / WITH .
I ZZI'["]" D ; A SINGLETON
. S ZZN=1
E D ; THERE IS AN [x] OCCURANCE
. S ZZN=$P($P(ZZI,"[",2),"]",1) ; PULL OUT THE OCCURANCE
. S ZZI=$P(ZZI,"[",1) ; TAKE OUT THE [X]
I ZZJ'="" S @ZNARY@(ZZI,ZZN,ZZJ)=ZVALUE
Q
;
PARSE(INXML,INDOC) ;CALL THE MXML PARSER ON INXML, PASSED BY NAME
; INDOC IS PASSED AS THE DOCUMENT NAME - DON'T KNOW WHERE TO STORE THIS NOW
; EXTRINSIC WHICH RETURNS THE DOCID ASSIGNED BY MXML
;Q $$EN^MXMLDOM(INXML)
Q $$EN^MXMLDOM(INXML,"W")
;
ISMULT(ZOID) ; RETURN TRUE IF ZOID IS ONE OF A MULTIPLE
N ZN
;I $$TAG(ZOID)["entry" B
S ZN=$$NXTSIB(ZOID)
I ZN'="" Q $$TAG(ZOID)=$$TAG(ZN) ; IF TAG IS THE SAME AS NEXT SIB TAG
Q 0
;
FIRST(ZOID) ;RETURNS THE OID OF THE FIRST CHILD OF ZOID
Q $$CHILD^MXMLDOM(C0SDOCID,ZOID)
;
PARENT(ZOID) ;RETURNS THE OID OF THE PARENT OF ZOID
Q $$PARENT^MXMLDOM(C0SDOCID,ZOID)
;
ATT(RTN,NODE) ;GET ATTRIBUTES FOR ZOID
S HANDLE=C0SDOCID
K @RTN
D GETTXT^MXMLDOM("A")
Q
;
TAG(ZOID) ; RETURNS THE XML TAG FOR THE NODE
;I ZOID=149 B ;GPLTEST
N X,Y
S Y=""
S X=$G(C0SCBK("TAG")) ;IS THERE A CALLBACK FOR THIS ROUTINE
I X'="" X X ; EXECUTE THE CALLBACK, SHOULD SET Y
I Y="" S Y=$$NAME^MXMLDOM(C0SDOCID,ZOID)
Q Y
;
NXTSIB(ZOID) ; RETURNS THE NEXT SIBLING
Q $$SIBLING^MXMLDOM(C0SDOCID,ZOID)
;
DATA(ZT,ZOID) ; RETURNS DATA FOR THE NODE
;N ZT,ZN S ZT=""
;S C0SDOM=$NA(^TMP("MXMLDOM",$J,C0SDOCID))
;Q $G(@C0SDOM@(ZOID,"T",1))
S ZN=$$TEXT^MXMLDOM(C0SDOCID,ZOID,ZT)
Q
;
OUTXML(ZRTN,INID) ; USES C0SMXMLB (MXMLBLD) TO OUTPUT XML FROM AN MXMLDOM
;
S C0SDOCID=INID
D START^C0SMXMLB($$TAG(1),,"G")
D NDOUT($$FIRST(1))
D END^C0SMXMLB ;END THE DOCUMENT
M @ZRTN=^TMP("MXMLBLD",$J)
K ^TMP("MXMLBLD",$J)
Q
;
NDOUT(ZOID) ;CALLBACK ROUTINE - IT IS RECURSIVE
N ZI S ZI=$$FIRST(ZOID)
I ZI'=0 D ; THERE IS A CHILD
. N ZATT D ATT("ZATT",ZOID) ; THESE ARE THE ATTRIBUTES MOVED TO ZATT
. D MULTI^C0SMXMLB("",$$TAG(ZOID),.ZATT,"NDOUT^C0SMXML(ZI)") ;HAVE CHILDREN
E D ; NO CHILD - IF NO CHILDREN, A NODE HAS DATA, IS AN ENDPOINT
. ;W "DOING",ZOID,!
. N ZD D DATA("ZD",ZOID) ;NODES WITHOUT CHILDREN HAVE DATA
. N ZATT D ATT("ZATT",ZOID) ;ATTRIBUTES
. D ITEM^C0SMXMLB("",$$TAG(ZOID),.ZATT,$G(ZD(1))) ;NO CHILDREN
I $$NXTSIB(ZOID)'=0 D ; THERE IS A SIBLING
. D NDOUT($$NXTSIB(ZOID)) ;RECURSE FOR SIBLINGS
Q
;
WNHIN(ZDFN) ; WRITES THE XML OUTPUT OF GET^NHINV TO AN XML FILE
;
N GN,GN2
D GET^NHINV(.GN,ZDFN) ; EXTRACT THE XML
S GN2=$NA(@GN@(1))
W $$OUTPUT^C0SXPATH(GN2,"nhin_"_ZDFN_".xml","/home/wvehr3-09/")
Q
;
TESTNARY ; TEST MAKING A NHIN ARRAY
N ZI S ZI=""
N ZH ; DOM HANDLE
D TEST1 ; PARSE AN NHIN RESULT INTO THE DOM
S ZH=C0SDOCID ; SET THE HANDLE
N ZD S ZD=$NA(^TMP("MXMLDOM",$J,ZH))
F S ZI=$O(@ZD@(ZI)) Q:ZI="" D ; FOR EACH NODE
. N ZATT
. D MNARY(.ZATT,ZH,ZI)
. N ZPRE,ZN
. S ZPRE=$$PRE(ZI)
. S ZN=$P(ZPRE,",",2)
. S ZPRE=$P(ZPRE,",",1)
. ;I $D(ZATT) ZWR ZATT
. N ZJ S ZJ=""
. F S ZJ=$O(ZATT(ZJ)) Q:ZJ="" D ; FOR EACH ATTRIBUTE
. . W ZPRE_"["_ZN_"]"_$$TAG(ZI)_"."_ZJ_"="_ZATT(ZJ),!
. . S GOUT(ZPRE,ZN,$$TAG(ZI)_"."_ZJ)=ZATT(ZJ)
Q
;
PRE(ZNODE) ; EXTRINSIC WHICH RETURNS THE PREFIX FOR A NODE
;
N GI,GI2,GPT,GJ,GN
S GI=$$PARENT(ZNODE) ; PARENT NODE
I GI=0 Q "" ; NO PARENT
S GPT=$$TAG(GI) ; TAG OF PARENT
S GI2=$$PARENT(GI) ; PARENT OF PARENT
I (GI2'=0)&($$TAG(GI2)'="results") S GPT=$$TAG(GI2)_"."_GPT
S GJ=$$FIRST(GI) ; NODE OF FIRST SIB
I GJ=ZNODE Q:$$TAG(GI)_",1"
F GN=2:1 Q:GJ=ZNODE D ;
. S GJ=$$NXTSIB(GJ) ; NEXT SIBLING
Q GPT_","_GN
;
MNARY(ZRTN,ZHANDLE,ZOID) ; MAKE A NHIN ARRAY FROM A DOM NODE
; RETURNED IN ZRTN, PASSED BY REFERENCE
; ZHANDLE IS THE DOM DOCUMENT ID
; ZOID IS THE DOM NODE
D ATT("ZRTN",ZOID)
Q
;

236
p/C0SNHINV.m
View File

@ -1,118 +1,118 @@
C0SNHINV ;SLC/MKB - Serve VistA data as XML via RPC - Smart Container Version
;;1.0;C0S;**1**;Oct 25, 2010;Build 11
;
; External References DBIA#
; ------------------- -----
; ^DPT 10035
; ^SC 10040
; DIQ 2056
; MPIF001 2701
; VASITE 10112
; XLFDT 10103
; XLFSTR 10104
; XUAF4 2171
;
GET(NHIN,DFN,TYPE,START,STOP,MAX,ID) ; -- Return search results as XML in @NHIN@(n)
; RPC = NHIN GET VISTA DATA
N ICN,NHINI,NHINTOTL
S NHIN=$NA(^TMP("NHINV",$J)) K @NHIN
;
; parse & validate input parameters
S ICN=+$P(DFN,";",2),DFN=+$G(DFN)
I 'DFN S DFN=+$$GETDFN^MPIF001(ICN)
I DFN<1!'$D(^DPT(DFN)) D ERR(1,DFN) G GTQ
S TYPE=$G(TYPE) I TYPE="" S TYPE=$$ALL
S:'$G(START) START=1410101 S:'$G(STOP) STOP=9999998 S:'$G(MAX) MAX=9999
I START,STOP,STOP<START N X S X=START,START=STOP,STOP=X ;switch
I STOP,$L(STOP,".")<2 S STOP=STOP_".24"
S ID=$G(ID)
;
; extract data
N NHINTYPE,NHINP,RTN
S NHINTYPE=TYPE D ADD("<results>")
F NHINP=1:1:$L(NHINTYPE,";") S TYPE=$P(NHINTYPE,";",NHINP) I $L(TYPE) D
. S RTN="EN^"_$$RTN(TYPE) Q:'$L($T(@RTN)) ;D ERR(2) Q
. D @(RTN_"(DFN,START,STOP,MAX,ID)")
D ADD("</results>")
;
I $G(NHINTOTL),$G(@NHIN@(1))="<results>" S @NHIN@(1)="<results total='"_NHINTOTL_"' >"
;
GTQ ; end
Q
;
RTN(X) ; -- Return name of NHINVxxx routine for clinical domain X
S X=$$UP^XLFSTR(X),Y="NHINV"
I X="ACCESSION" S Y="NHINVLRA"
I X="ALLERGY" S Y="NHINVART"
I X="APPOINTMENT" S Y="NHINVAPT"
; X="CONSULT" S Y="NHINVCON"
I X="DOCUMENT" S Y="NHINVTIU"
I X="IMMUNIZATION" S Y="NHINVIMM"
I X="LAB" S Y="NHINVLR"
I X="PANEL" S Y="NHINVLRO"
I X="MED" S Y="NHINVPS"
I X="RX" S Y="NHINVPSO"
; X="ORDER" S Y="NHINVOR"
I X="PATIENT" S Y="NHINVPT"
I X="PROBLEM" S Y="NHINVPL"
I X="PROCEDURE" S Y="NHINVPRC"
I X="SURGERY" S Y="NHINVSR"
I X="VISIT" S Y="NHINVSIT"
I X="VITAL" S Y="NHINVIT"
I X="RADIOLOGY" S Y="NHINVRA"
I X="NEW" S Y="NHINVPR"
Q Y
;
ALL() ; -- return string for all types of data
;Q "patient;allergy;problem;vital;lab;med;immunization;visit;appointment;document;procedure"
Q "patient;allergy;problem;vital;lab;med;immunization;visit;appointment;procedure"
;
ERR(X,VAL) ; -- return error message
N MSG S MSG="Error"
I X=1 S MSG="Patient with dfn '"_$G(VAL)_"' not found"
I X=2 S MSG="Requested domain type '"_$G(VAL)_"' not recognized"
I X=99 S MSG="Unknown request"
;
D ADD("<error>")
D ADD("<message>"_MSG_"</message>")
D ADD("</error>")
Q
;
ESC(X) ; -- escape outgoing XML
; Q $ZCONVERT(X,"O","HTML") ; uncomment for fastest performance on Cache
;
N I,Y,QOT S QOT=""""
S Y=$P(X,"&") F I=2:1:$L(X,"&") S Y=Y_"&amp;"_$P(X,"&",I)
S X=Y,Y=$P(X,"<") F I=2:1:$L(X,"<") S Y=Y_"&lt;"_$P(X,"<",I)
S X=Y,Y=$P(X,">") F I=2:1:$L(X,">") S Y=Y_"&gt;"_$P(X,">",I)
S X=Y,Y=$P(X,"'") F I=2:1:$L(X,"'") S Y=Y_"&apos;"_$P(X,"'",I)
S X=Y,Y=$P(X,QOT) F I=2:1:$L(X,QOT) S Y=Y_"&quot;"_$P(X,QOT,I)
Q Y
;
ADD(X) ; Add a line @NHIN@(n)=X
S NHINI=$G(NHINI)+1
S @NHIN@(NHINI)=X
Q
;
STRING(ARRAY) ; -- Return text in ARRAY(n) or ARRAY(n,0) as a string
N I,X,Y S Y=""
S I=+$O(ARRAY("")) I I=0 S I=+$O(ARRAY(0))
S Y=$S($D(ARRAY(I,0)):ARRAY(I,0),1:$G(ARRAY(I)))
F S I=$O(ARRAY(I)) Q:I<1 D
. S X=$S($D(ARRAY(I,0)):ARRAY(I,0),1:ARRAY(I))
. I $E(X)=" " S Y=Y_$C(13,10)_X Q
. S Y=Y_$S($E(Y,$L(Y))=" ":"",1:" ")_X
Q Y
;
FAC(X) ; -- return Institution file station# for location X
N HLOC,FAC,Y0,Y S Y=""
S HLOC=$G(^SC(+$G(X),0)),FAC=$P(HLOC,U,4) ;Institution ien
; Get P:4 via Med Ctr Div, if not directly linked
I 'FAC,$P(HLOC,U,15) S FAC=$$GET1^DIQ(40.8,+$P(HLOC,U,15)_",",.07,"I")
S Y0=$S(FAC:$$NS^XUAF4(FAC),1:$P($$SITE^VASITE,U,2,3)) ;name^stn#
S:$L(Y0) Y=$P(Y0,U,2)_U_$P(Y0,U) ;switch to stn#^name
I $L(Y),'Y S $P(Y,U)=FAC
Q Y
;
VUID(IEN,FILE) ; -- Return VUID for item
Q $$GET1^DIQ(FILE,IEN_",",99.99)
C0SNHINV ;SLC/MKB - Serve VistA data as XML via RPC - Smart Container Version
;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 4
;
; External References DBIA#
; ------------------- -----
; ^DPT 10035
; ^SC 10040
; DIQ 2056
; MPIF001 2701
; VASITE 10112
; XLFDT 10103
; XLFSTR 10104
; XUAF4 2171
;
GET(NHIN,DFN,TYPE,START,STOP,MAX,ID) ; -- Return search results as XML in @NHIN@(n)
; RPC = NHIN GET VISTA DATA
N ICN,NHINI,NHINTOTL
S NHIN=$NA(^TMP("NHINV",$J)) K @NHIN
;
; parse & validate input parameters
S ICN=+$P(DFN,";",2),DFN=+$G(DFN)
I 'DFN S DFN=+$$GETDFN^MPIF001(ICN)
I DFN<1!'$D(^DPT(DFN)) D ERR(1,DFN) G GTQ
S TYPE=$G(TYPE) I TYPE="" S TYPE=$$ALL
S:'$G(START) START=1410101 S:'$G(STOP) STOP=9999998 S:'$G(MAX) MAX=9999
I START,STOP,STOP<START N X S X=START,START=STOP,STOP=X ;switch
I STOP,$L(STOP,".")<2 S STOP=STOP_".24"
S ID=$G(ID)
;
; extract data
N NHINTYPE,NHINP,RTN
S NHINTYPE=TYPE D ADD("<results>")
F NHINP=1:1:$L(NHINTYPE,";") S TYPE=$P(NHINTYPE,";",NHINP) I $L(TYPE) D
. S RTN="EN^"_$$RTN(TYPE) Q:'$L($T(@RTN)) ;D ERR(2) Q
. D @(RTN_"(DFN,START,STOP,MAX,ID)")
D ADD("</results>")
;
I $G(NHINTOTL),$G(@NHIN@(1))="<results>" S @NHIN@(1)="<results total='"_NHINTOTL_"' >"
;
GTQ ; end
Q
;
RTN(X) ; -- Return name of NHINVxxx routine for clinical domain X
S X=$$UP^XLFSTR(X),Y="NHINV"
I X="ACCESSION" S Y="NHINVLRA"
I X="ALLERGY" S Y="NHINVART"
I X="APPOINTMENT" S Y="NHINVAPT"
; X="CONSULT" S Y="NHINVCON"
I X="DOCUMENT" S Y="NHINVTIU"
I X="IMMUNIZATION" S Y="NHINVIMM"
I X="LAB" S Y="NHINVLR"
I X="PANEL" S Y="NHINVLRO"
I X="MED" S Y="NHINVPS"
I X="RX" S Y="NHINVPSO"
; X="ORDER" S Y="NHINVOR"
I X="PATIENT" S Y="NHINVPT"
I X="PROBLEM" S Y="NHINVPL"
I X="PROCEDURE" S Y="NHINVPRC"
I X="SURGERY" S Y="NHINVSR"
I X="VISIT" S Y="NHINVSIT"
I X="VITAL" S Y="NHINVIT"
I X="RADIOLOGY" S Y="NHINVRA"
I X="NEW" S Y="NHINVPR"
Q Y
;
ALL() ; -- return string for all types of data
;Q "patient;allergy;problem;vital;lab;med;immunization;visit;appointment;document;procedure"
Q "patient;allergy;problem;vital;lab;med;immunization;visit;appointment;procedure"
;
ERR(X,VAL) ; -- return error message
N MSG S MSG="Error"
I X=1 S MSG="Patient with dfn '"_$G(VAL)_"' not found"
I X=2 S MSG="Requested domain type '"_$G(VAL)_"' not recognized"
I X=99 S MSG="Unknown request"
;
D ADD("<error>")
D ADD("<message>"_MSG_"</message>")
D ADD("</error>")
Q
;
ESC(X) ; -- escape outgoing XML
; Q $ZCONVERT(X,"O","HTML") ; uncomment for fastest performance on Cache
;
N I,Y,QOT S QOT=""""
S Y=$P(X,"&") F I=2:1:$L(X,"&") S Y=Y_"&amp;"_$P(X,"&",I)
S X=Y,Y=$P(X,"<") F I=2:1:$L(X,"<") S Y=Y_"&lt;"_$P(X,"<",I)
S X=Y,Y=$P(X,">") F I=2:1:$L(X,">") S Y=Y_"&gt;"_$P(X,">",I)
S X=Y,Y=$P(X,"'") F I=2:1:$L(X,"'") S Y=Y_"&apos;"_$P(X,"'",I)
S X=Y,Y=$P(X,QOT) F I=2:1:$L(X,QOT) S Y=Y_"&quot;"_$P(X,QOT,I)
Q Y
;
ADD(X) ; Add a line @NHIN@(n)=X
S NHINI=$G(NHINI)+1
S @NHIN@(NHINI)=X
Q
;
STRING(ARRAY) ; -- Return text in ARRAY(n) or ARRAY(n,0) as a string
N I,X,Y S Y=""
S I=+$O(ARRAY("")) I I=0 S I=+$O(ARRAY(0))
S Y=$S($D(ARRAY(I,0)):ARRAY(I,0),1:$G(ARRAY(I)))
F S I=$O(ARRAY(I)) Q:I<1 D
. S X=$S($D(ARRAY(I,0)):ARRAY(I,0),1:ARRAY(I))
. I $E(X)=" " S Y=Y_$C(13,10)_X Q
. S Y=Y_$S($E(Y,$L(Y))=" ":"",1:" ")_X
Q Y
;
FAC(X) ; -- return Institution file station# for location X
N HLOC,FAC,Y0,Y S Y=""
S HLOC=$G(^SC(+$G(X),0)),FAC=$P(HLOC,U,4) ;Institution ien
; Get P:4 via Med Ctr Div, if not directly linked
I 'FAC,$P(HLOC,U,15) S FAC=$$GET1^DIQ(40.8,+$P(HLOC,U,15)_",",.07,"I")
S Y0=$S(FAC:$$NS^XUAF4(FAC),1:$P($$SITE^VASITE,U,2,3)) ;name^stn#
S:$L(Y0) Y=$P(Y0,U,2)_U_$P(Y0,U) ;switch to stn#^name
I $L(Y),'Y S $P(Y,U)=FAC
Q Y
;
VUID(IEN,FILE) ; -- Return VUID for item
Q $$GET1^DIQ(FILE,IEN_",",99.99)

646
p/C0SPROB.m
View File

@ -1,323 +1,323 @@
C0SPROB ; GPL - Smart Problem Processing ;5/01/12 17:05
;;0.1;C0S;nopatch;noreleasedate;Build 2
;Copyright 2012 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;
;This program is free software; you can redistribute it and/or modify
;it under the terms of the GNU General Public License as published by
;the Free Software Foundation; either version 2 of the License, or
;(at your option) any later version.
;
;This program is distributed in the hope that it will be useful,
;but WITHOUT ANY WARRANTY; without even the implied warranty of
;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;GNU General Public License for more details.
;
;You should have received a copy of the GNU General Public License along
;with this program; if not, write to the Free Software Foundation, Inc.,
;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
;
Q
;
; sample VistA NHIN problem list
;
;^TMP("C0STBL",91,"problem",1,"acuity@value")="C"
;^TMP("C0STBL",91,"problem",1,"entered@value")=3110531
;^TMP("C0STBL",91,"problem",1,"facility@code")=100
;^TMP("C0STBL",91,"problem",1,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",1,"icd@value")=414.9
;^TMP("C0STBL",91,"problem",1,"id@value")=100
;^TMP("C0STBL",91,"problem",1,"location@value")="DR OFFICE"
;^TMP("C0STBL",91,"problem",1,"name@value")="Coronary Artery Disease"
;^TMP("C0STBL",91,"problem",1,"onset@value")=3100201
;^TMP("C0STBL",91,"problem",1,"provider@code")=63
;^TMP("C0STBL",91,"problem",1,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",1,"removed@value")=0
;^TMP("C0STBL",91,"problem",1,"sc@value")=0
;^TMP("C0STBL",91,"problem",1,"status@value")="A"
;^TMP("C0STBL",91,"problem",1,"unverified@value")=0
;^TMP("C0STBL",91,"problem",1,"updated@value")=3110531
;^TMP("C0STBL",91,"problem",2,"acuity@value")="C"
;^TMP("C0STBL",91,"problem",2,"entered@value")=3110602
;^TMP("C0STBL",91,"problem",2,"facility@code")=100
;^TMP("C0STBL",91,"problem",2,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",2,"icd@value")=780.2
;^TMP("C0STBL",91,"problem",2,"id@value")=108
;^TMP("C0STBL",91,"problem",2,"name@value")="Syncope and collapse"
;^TMP("C0STBL",91,"problem",2,"onset@value")=3110102
;^TMP("C0STBL",91,"problem",2,"provider@code")=63
;^TMP("C0STBL",91,"problem",2,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",2,"removed@value")=0
;^TMP("C0STBL",91,"problem",2,"sc@value")=0
;^TMP("C0STBL",91,"problem",2,"status@value")="A"
;^TMP("C0STBL",91,"problem",2,"unverified@value")=0
;^TMP("C0STBL",91,"problem",2,"updated@value")=3110602
;^TMP("C0STBL",91,"problem",3,"acuity@value")="C"
;^TMP("C0STBL",91,"problem",3,"entered@value")=3110602
;^TMP("C0STBL",91,"problem",3,"facility@code")=100
;^TMP("C0STBL",91,"problem",3,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",3,"icd@value")=433.91
;^TMP("C0STBL",91,"problem",3,"id@value")=109
;^TMP("C0STBL",91,"problem",3,"name@value")="Occlusion and Stenosis of Unspecifid Precerebral Artery with Cerebral Infarctio"
;^TMP("C0STBL",91,"problem",3,"onset@value")=3100101
;^TMP("C0STBL",91,"problem",3,"provider@code")=63
;^TMP("C0STBL",91,"problem",3,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",3,"removed@value")=0
;^TMP("C0STBL",91,"problem",3,"sc@value")=0
;^TMP("C0STBL",91,"problem",3,"status@value")="A"
;^TMP("C0STBL",91,"problem",3,"unverified@value")=0
;^TMP("C0STBL",91,"problem",3,"updated@value")=3110602
;^TMP("C0STBL",91,"problem",4,"entered@value")=3110603
;^TMP("C0STBL",91,"problem",4,"facility@code")=100
;^TMP("C0STBL",91,"problem",4,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",4,"icd@value")="00.66"
;^TMP("C0STBL",91,"problem",4,"id@value")=115
;^TMP("C0STBL",91,"problem",4,"location@value")="DR OFFICE"
;^TMP("C0STBL",91,"problem",4,"name@value")="00.66"
;^TMP("C0STBL",91,"problem",4,"provider@code")=63
;^TMP("C0STBL",91,"problem",4,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",4,"removed@value")=0
;^TMP("C0STBL",91,"problem",4,"status@value")="A"
;^TMP("C0STBL",91,"problem",4,"unverified@value")=0
;^TMP("C0STBL",91,"problem",4,"updated@value")=3110603
;^TMP("C0STBL",91,"problem",5,"entered@value")=3110603
;^TMP("C0STBL",91,"problem",5,"facility@code")=100
;^TMP("C0STBL",91,"problem",5,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",5,"icd@value")=37.21
;^TMP("C0STBL",91,"problem",5,"id@value")=116
;^TMP("C0STBL",91,"problem",5,"location@value")="DR OFFICE"
;^TMP("C0STBL",91,"problem",5,"name@value")=37.21
;^TMP("C0STBL",91,"problem",5,"provider@code")=63
;^TMP("C0STBL",91,"problem",5,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",5,"removed@value")=0
;^TMP("C0STBL",91,"problem",5,"status@value")="A"
;^TMP("C0STBL",91,"problem",5,"unverified@value")=0
;^TMP("C0STBL",91,"problem",5,"updated@value")=3110603
;^TMP("C0STBL",91,"problem",6,"entered@value")=3110603
;^TMP("C0STBL",91,"problem",6,"facility@code")=100
;^TMP("C0STBL",91,"problem",6,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",6,"icd@value")=81.51
;^TMP("C0STBL",91,"problem",6,"id@value")=117
;^TMP("C0STBL",91,"problem",6,"location@value")="DR OFFICE"
;^TMP("C0STBL",91,"problem",6,"name@value")=81.51
;^TMP("C0STBL",91,"problem",6,"provider@code")=63
;^TMP("C0STBL",91,"problem",6,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",6,"removed@value")=0
;^TMP("C0STBL",91,"problem",6,"status@value")="A"
;^TMP("C0STBL",91,"problem",6,"unverified@value")=0
;^TMP("C0STBL",91,"problem",6,"updated@value")=3110603
;^TMP("C0STBL",91,"problem",7,"entered@value")=3110603
;^TMP("C0STBL",91,"problem",7,"facility@code")=100
;^TMP("C0STBL",91,"problem",7,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",7,"icd@value")=47.09
;^TMP("C0STBL",91,"problem",7,"id@value")=118
;^TMP("C0STBL",91,"problem",7,"location@value")="DR OFFICE"
;^TMP("C0STBL",91,"problem",7,"name@value")=47.09
;^TMP("C0STBL",91,"problem",7,"provider@code")=63
;^TMP("C0STBL",91,"problem",7,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",7,"removed@value")=0
;^TMP("C0STBL",91,"problem",7,"status@value")="A"
;^TMP("C0STBL",91,"problem",7,"unverified@value")=0
;^TMP("C0STBL",91,"problem",7,"updated@value")=3110603
;^TMP("C0STBL",91,"problem",8,"entered@value")=3110603
;^TMP("C0STBL",91,"problem",8,"facility@code")=100
;^TMP("C0STBL",91,"problem",8,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",8,"icd@value")="250.00"
;^TMP("C0STBL",91,"problem",8,"id@value")=119
;^TMP("C0STBL",91,"problem",8,"location@value")="DR OFFICE"
;^TMP("C0STBL",91,"problem",8,"name@value")="Diabetes Mellitus without mentionof Complication, type II or unspecified type,"
;^TMP("C0STBL",91,"problem",8,"provider@code")=63
;^TMP("C0STBL",91,"problem",8,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",8,"removed@value")=0
;^TMP("C0STBL",91,"problem",8,"status@value")="A"
;^TMP("C0STBL",91,"problem",8,"unverified@value")=0
;^TMP("C0STBL",91,"problem",8,"updated@value")=3110603
;
; sample Smart lab result triples
;
;G("node16rk1fgdvx10882","code")="snomed:40930008"
;G("node16rk1fgdvx10882","dcterms:title")="Hypothyroidism"
;G("node16rk1fgdvx10882","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11051","code")="snomed:188155002"
;G("node16rk1fgdvx11051","dcterms:title")="Primary malignant neoplasm of lower outer quadrant of female breast"
;G("node16rk1fgdvx11051","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11073","code")="snomed:353295004"
;G("node16rk1fgdvx11073","dcterms:title")="Toxic diffuse goiter"
;G("node16rk1fgdvx11073","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11089","code")="snomed:54302000"
;G("node16rk1fgdvx11089","dcterms:title")="Disorder of breast"
;G("node16rk1fgdvx11089","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11351","code")="snomed:38341003"
;G("node16rk1fgdvx11351","dcterms:title")="Essential hypertension"
;G("node16rk1fgdvx11351","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11390","code")="snomed:44054006"
;G("node16rk1fgdvx11390","dcterms:title")="Diabetes mellitus type 2"
;G("node16rk1fgdvx11390","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11558","code")="snomed:195967001"
;G("node16rk1fgdvx11558","dcterms:title")="Asthma"
;G("node16rk1fgdvx11558","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11578","code")="snomed:254837009"
;G("node16rk1fgdvx11578","dcterms:title")="Primary malignant neoplasm of female breast"
;G("node16rk1fgdvx11578","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11687","code")="snomed:8517006"
;G("node16rk1fgdvx11687","dcterms:title")="History of tobacco use"
;G("node16rk1fgdvx11687","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11716","code")="snomed:55822004"
;G("node16rk1fgdvx11716","dcterms:title")="Hyperlipidemia"
;G("node16rk1fgdvx11716","rdf:type")="sp:CodedValue"
;G("smart:1577780/problems/69560e4721e1","belongsTo")="smart:1577780"
;G("smart:1577780/problems/69560e4721e1","problemName")="node16rk1fgdvx11089"
;G("smart:1577780/problems/69560e4721e1","rdf:type")="sp:Problem"
;G("smart:1577780/problems/69560e4721e1","startDate")="2005-08-02"
;G("smart:1577780/problems/06ef10c4e92c","belongsTo")="smart:1577780"
;G("smart:1577780/problems/06ef10c4e92c","problemName")="node16rk1fgdvx11051"
;G("smart:1577780/problems/06ef10c4e92c","rdf:type")="sp:Problem"
;G("smart:1577780/problems/06ef10c4e92c","startDate")="2006-02-20"
;G("smart:1577780/problems/9894ba9dfe5a","belongsTo")="smart:1577780"
;G("smart:1577780/problems/9894ba9dfe5a","problemName")="node16rk1fgdvx11578"
;G("smart:1577780/problems/9894ba9dfe5a","rdf:type")="sp:Problem"
;G("smart:1577780/problems/9894ba9dfe5a","startDate")="2005-08-22"
;G("smart:1577780/problems/c109aa7a0675","belongsTo")="smart:1577780"
;G("smart:1577780/problems/c109aa7a0675","problemName")="node16rk1fgdvx11558"
;G("smart:1577780/problems/c109aa7a0675","rdf:type")="sp:Problem"
;G("smart:1577780/problems/c109aa7a0675","startDate")="2005-09-22"
;G("smart:1577780/problems/1c50100614a2","belongsTo")="smart:1577780"
;G("smart:1577780/problems/1c50100614a2","problemName")="node16rk1fgdvx11073"
;G("smart:1577780/problems/1c50100614a2","rdf:type")="sp:Problem"
;G("smart:1577780/problems/1c50100614a2","startDate")="2007-02-21"
;G("smart:1577780/problems/083dffb2c4a0","belongsTo")="smart:1577780"
;G("smart:1577780/problems/083dffb2c4a0","problemName")="node16rk1fgdvx11390"
;G("smart:1577780/problems/083dffb2c4a0","rdf:type")="sp:Problem"
;G("smart:1577780/problems/083dffb2c4a0","startDate")="2007-01-07"
;G("smart:1577780/problems/762b5639a2d1","belongsTo")="smart:1577780"
;G("smart:1577780/problems/762b5639a2d1","problemName")="node16rk1fgdvx11687"
;G("smart:1577780/problems/762b5639a2d1","rdf:type")="sp:Problem"
;G("smart:1577780/problems/762b5639a2d1","startDate")="2006-02-20"
;G("smart:1577780/problems/9dc9053dd6f4","belongsTo")="smart:1577780"
;G("smart:1577780/problems/9dc9053dd6f4","problemName")="node16rk1fgdvx11716"
;G("smart:1577780/problems/9dc9053dd6f4","rdf:type")="sp:Problem"
;G("smart:1577780/problems/9dc9053dd6f4","startDate")="2008-04-08"
;G("smart:1577780/problems/e3fe9b7ee552","belongsTo")="smart:1577780"
;G("smart:1577780/problems/e3fe9b7ee552","problemName")="node16rk1fgdvx10882"
;G("smart:1577780/problems/e3fe9b7ee552","rdf:type")="sp:Problem"
;G("smart:1577780/problems/e3fe9b7ee552","startDate")="2005-10-27"
;G("smart:1577780/problems/9933307e8f95","belongsTo")="smart:1577780"
;G("smart:1577780/problems/9933307e8f95","problemName")="node16rk1fgdvx11351"
;G("smart:1577780/problems/9933307e8f95","rdf:type")="sp:Problem"
;G("smart:1577780/problems/9933307e8f95","startDate")="2005-08-22"
;G("snomed:188155002","dcterms:identifier")=188155002
;G("snomed:188155002","dcterms:title")="Primary malignant neoplasm of lower outer quadrant of female breast"
;G("snomed:188155002","rdf:type")="sp:Code"
;G("snomed:188155002","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:195967001","dcterms:identifier")=195967001
;G("snomed:195967001","dcterms:title")="Asthma"
;G("snomed:195967001","rdf:type")="sp:Code"
;G("snomed:195967001","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:254837009","dcterms:identifier")=254837009
;G("snomed:254837009","dcterms:title")="Primary malignant neoplasm of female breast"
;G("snomed:254837009","rdf:type")="sp:Code"
;G("snomed:254837009","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:353295004","dcterms:identifier")=353295004
;G("snomed:353295004","dcterms:title")="Toxic diffuse goiter"
;G("snomed:353295004","rdf:type")="sp:Code"
;G("snomed:353295004","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:38341003","dcterms:identifier")=38341003
;G("snomed:38341003","dcterms:title")="Essential hypertension"
;G("snomed:38341003","rdf:type")="sp:Code"
;G("snomed:38341003","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:40930008","dcterms:identifier")=40930008
;G("snomed:40930008","dcterms:title")="Hypothyroidism"
;G("snomed:40930008","rdf:type")="sp:Code"
;G("snomed:40930008","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:44054006","dcterms:identifier")=44054006
;G("snomed:44054006","dcterms:title")="Diabetes mellitus type 2"
;G("snomed:44054006","rdf:type")="sp:Code"
;G("snomed:44054006","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:54302000","dcterms:identifier")=54302000
;G("snomed:54302000","dcterms:title")="Disorder of breast"
;G("snomed:54302000","rdf:type")="sp:Code"
;G("snomed:54302000","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:55822004","dcterms:identifier")=55822004
;G("snomed:55822004","dcterms:title")="Hyperlipidemia"
;G("snomed:55822004","rdf:type")="sp:Code"
;G("snomed:55822004","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:8517006","dcterms:identifier")=8517006
;G("snomed:8517006","dcterms:title")="History of tobacco use"
;G("snomed:8517006","rdf:type")="sp:Code"
;G("snomed:8517006","system")="http://purl.bioontology.org/ontology/SNOMEDCT/"
;
PROB(GRTN,C0SARY) ; GRTN, passed by reference,
; is the return name of the graph created. "" if none
; C0SARY is passed in by reference and is the NHIN array of problems
;
I $O(C0SARY("problem",""))="" D Q ;
. I $D(DEBUG) W !,"No Problems"
S GRTN="" ; default to no problems
N C0SGRF
S C0SGRF="vistaSmart:"_ZPATID_"/problems"
I $D(DEBUG) W !,"Processing ",C0SGRF
D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
N FARY S FARY="C0XFARY"
D USEFARY^C0XF2N(FARY)
D VOCINIT^C0XUTIL
;
D STARTADD^C0XF2N ; initialize to create triples
;
N ZI S ZI=""
F S ZI=$O(C0SARY("problem",ZI)) Q:ZI="" D ;
. N LRN,ZR ; ZR is the local array for building the new triples
. S LRN=$NA(C0SARY("problem",ZI)) ; base for values in this lab result
. ;
. N PROBID ; unique Id for this problem
. S PROBID=C0SGRF_"/"_$$LKY17^C0XF2N ; use a random number
. ;
. ; i don't like this because the same problems gets a
. ; different ID every time it's reported. Can't trace it back to VistA
. ; I'd rather be using id@value ie "id@value")="118"
. ;
. N SNOMED S SNOMED=$G(@LRN@("icd@value"))
. N SNOGRF S SNOGRF="snomed:"_SNOMED
. N SNOTIT S SNOTIT=$G(@LRN@("name@value"))
. I $D(DEBUG) D ;
. . W !,"Processing Problem List ",PROBID
. . W !,"problem: ",SNOTIT
. . W !,"code: ",SNOMED
. ;
. ; first do the base result graph
. ;
. S ZR("rdf:type")="sp:Problem"
. S ZR("sp:belongsTo")=C0SGRF ; the subject for this patient's problems
. ; ie /vista/smart/99912345/problems
. ;
. N PROBNAME S PROBNAME=$$ANONS^C0XF2N ; new node for problem name
. S ZR("sp:problemName")=PROBNAME
. ;
. N STARTDT S STARTDT=$$SPDATE^C0SUTIL($G(@LRN@("entered@value")))
. S ZR("sp:startDate")=STARTDT
. ;
. D ADDINN^C0XF2N(C0SGRF,PROBID,.ZR) ; addIfNotNull the triples
. K ZR ; clean up
. ;
. ; create the problemName graph
. ;
. S ZR("rdf:type")="sp:CodedValue"
. S ZR("sp:code")="snomed:"_SNOMED
. S ZR("dcterms:title")=$G(@LRN@("name@value"))
. D ADDINN^C0XF2N(C0SGRF,PROBNAME,.ZR)
. K ZR
. ;
. ; create snomed graph
. ;
. S ZR("rdf:type")="sp:Code"
. S ZR("sp:system")="http://purl.bioontology.org/ontology/SNOMEDCT"
. S ZR("dcterms:identifier")=SNOMED
. S ZR("dcterms:title")=SNOTIT
. D ADDINN^C0XF2N(C0SGRF,SNOGRF,.ZR)
. K ZR
. ;
D BULKLOAD^C0XF2N(.C0XFDA)
S GRTN=C0SGRF
Q
;
C0SPROB ; GPL - Smart Problem Processing ;5/01/12 17:05
;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 4
;Copyright 2012 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;
;This program is free software; you can redistribute it and/or modify
;it under the terms of the GNU General Public License as published by
;the Free Software Foundation; either version 2 of the License, or
;(at your option) any later version.
;
;This program is distributed in the hope that it will be useful,
;but WITHOUT ANY WARRANTY; without even the implied warranty of
;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;GNU General Public License for more details.
;
;You should have received a copy of the GNU General Public License along
;with this program; if not, write to the Free Software Foundation, Inc.,
;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
;
Q
;
; sample VistA NHIN problem list
;
;^TMP("C0STBL",91,"problem",1,"acuity@value")="C"
;^TMP("C0STBL",91,"problem",1,"entered@value")=3110531
;^TMP("C0STBL",91,"problem",1,"facility@code")=100
;^TMP("C0STBL",91,"problem",1,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",1,"icd@value")=414.9
;^TMP("C0STBL",91,"problem",1,"id@value")=100
;^TMP("C0STBL",91,"problem",1,"location@value")="DR OFFICE"
;^TMP("C0STBL",91,"problem",1,"name@value")="Coronary Artery Disease"
;^TMP("C0STBL",91,"problem",1,"onset@value")=3100201
;^TMP("C0STBL",91,"problem",1,"provider@code")=63
;^TMP("C0STBL",91,"problem",1,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",1,"removed@value")=0
;^TMP("C0STBL",91,"problem",1,"sc@value")=0
;^TMP("C0STBL",91,"problem",1,"status@value")="A"
;^TMP("C0STBL",91,"problem",1,"unverified@value")=0
;^TMP("C0STBL",91,"problem",1,"updated@value")=3110531
;^TMP("C0STBL",91,"problem",2,"acuity@value")="C"
;^TMP("C0STBL",91,"problem",2,"entered@value")=3110602
;^TMP("C0STBL",91,"problem",2,"facility@code")=100
;^TMP("C0STBL",91,"problem",2,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",2,"icd@value")=780.2
;^TMP("C0STBL",91,"problem",2,"id@value")=108
;^TMP("C0STBL",91,"problem",2,"name@value")="Syncope and collapse"
;^TMP("C0STBL",91,"problem",2,"onset@value")=3110102
;^TMP("C0STBL",91,"problem",2,"provider@code")=63
;^TMP("C0STBL",91,"problem",2,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",2,"removed@value")=0
;^TMP("C0STBL",91,"problem",2,"sc@value")=0
;^TMP("C0STBL",91,"problem",2,"status@value")="A"
;^TMP("C0STBL",91,"problem",2,"unverified@value")=0
;^TMP("C0STBL",91,"problem",2,"updated@value")=3110602
;^TMP("C0STBL",91,"problem",3,"acuity@value")="C"
;^TMP("C0STBL",91,"problem",3,"entered@value")=3110602
;^TMP("C0STBL",91,"problem",3,"facility@code")=100
;^TMP("C0STBL",91,"problem",3,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",3,"icd@value")=433.91
;^TMP("C0STBL",91,"problem",3,"id@value")=109
;^TMP("C0STBL",91,"problem",3,"name@value")="Occlusion and Stenosis of Unspecifid Precerebral Artery with Cerebral Infarctio"
;^TMP("C0STBL",91,"problem",3,"onset@value")=3100101
;^TMP("C0STBL",91,"problem",3,"provider@code")=63
;^TMP("C0STBL",91,"problem",3,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",3,"removed@value")=0
;^TMP("C0STBL",91,"problem",3,"sc@value")=0
;^TMP("C0STBL",91,"problem",3,"status@value")="A"
;^TMP("C0STBL",91,"problem",3,"unverified@value")=0
;^TMP("C0STBL",91,"problem",3,"updated@value")=3110602
;^TMP("C0STBL",91,"problem",4,"entered@value")=3110603
;^TMP("C0STBL",91,"problem",4,"facility@code")=100
;^TMP("C0STBL",91,"problem",4,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",4,"icd@value")="00.66"
;^TMP("C0STBL",91,"problem",4,"id@value")=115
;^TMP("C0STBL",91,"problem",4,"location@value")="DR OFFICE"
;^TMP("C0STBL",91,"problem",4,"name@value")="00.66"
;^TMP("C0STBL",91,"problem",4,"provider@code")=63
;^TMP("C0STBL",91,"problem",4,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",4,"removed@value")=0
;^TMP("C0STBL",91,"problem",4,"status@value")="A"
;^TMP("C0STBL",91,"problem",4,"unverified@value")=0
;^TMP("C0STBL",91,"problem",4,"updated@value")=3110603
;^TMP("C0STBL",91,"problem",5,"entered@value")=3110603
;^TMP("C0STBL",91,"problem",5,"facility@code")=100
;^TMP("C0STBL",91,"problem",5,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",5,"icd@value")=37.21
;^TMP("C0STBL",91,"problem",5,"id@value")=116
;^TMP("C0STBL",91,"problem",5,"location@value")="DR OFFICE"
;^TMP("C0STBL",91,"problem",5,"name@value")=37.21
;^TMP("C0STBL",91,"problem",5,"provider@code")=63
;^TMP("C0STBL",91,"problem",5,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",5,"removed@value")=0
;^TMP("C0STBL",91,"problem",5,"status@value")="A"
;^TMP("C0STBL",91,"problem",5,"unverified@value")=0
;^TMP("C0STBL",91,"problem",5,"updated@value")=3110603
;^TMP("C0STBL",91,"problem",6,"entered@value")=3110603
;^TMP("C0STBL",91,"problem",6,"facility@code")=100
;^TMP("C0STBL",91,"problem",6,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",6,"icd@value")=81.51
;^TMP("C0STBL",91,"problem",6,"id@value")=117
;^TMP("C0STBL",91,"problem",6,"location@value")="DR OFFICE"
;^TMP("C0STBL",91,"problem",6,"name@value")=81.51
;^TMP("C0STBL",91,"problem",6,"provider@code")=63
;^TMP("C0STBL",91,"problem",6,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",6,"removed@value")=0
;^TMP("C0STBL",91,"problem",6,"status@value")="A"
;^TMP("C0STBL",91,"problem",6,"unverified@value")=0
;^TMP("C0STBL",91,"problem",6,"updated@value")=3110603
;^TMP("C0STBL",91,"problem",7,"entered@value")=3110603
;^TMP("C0STBL",91,"problem",7,"facility@code")=100
;^TMP("C0STBL",91,"problem",7,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",7,"icd@value")=47.09
;^TMP("C0STBL",91,"problem",7,"id@value")=118
;^TMP("C0STBL",91,"problem",7,"location@value")="DR OFFICE"
;^TMP("C0STBL",91,"problem",7,"name@value")=47.09
;^TMP("C0STBL",91,"problem",7,"provider@code")=63
;^TMP("C0STBL",91,"problem",7,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",7,"removed@value")=0
;^TMP("C0STBL",91,"problem",7,"status@value")="A"
;^TMP("C0STBL",91,"problem",7,"unverified@value")=0
;^TMP("C0STBL",91,"problem",7,"updated@value")=3110603
;^TMP("C0STBL",91,"problem",8,"entered@value")=3110603
;^TMP("C0STBL",91,"problem",8,"facility@code")=100
;^TMP("C0STBL",91,"problem",8,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",8,"icd@value")="250.00"
;^TMP("C0STBL",91,"problem",8,"id@value")=119
;^TMP("C0STBL",91,"problem",8,"location@value")="DR OFFICE"
;^TMP("C0STBL",91,"problem",8,"name@value")="Diabetes Mellitus without mentionof Complication, type II or unspecified type,"
;^TMP("C0STBL",91,"problem",8,"provider@code")=63
;^TMP("C0STBL",91,"problem",8,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",8,"removed@value")=0
;^TMP("C0STBL",91,"problem",8,"status@value")="A"
;^TMP("C0STBL",91,"problem",8,"unverified@value")=0
;^TMP("C0STBL",91,"problem",8,"updated@value")=3110603
;
; sample Smart lab result triples
;
;G("node16rk1fgdvx10882","code")="snomed:40930008"
;G("node16rk1fgdvx10882","dcterms:title")="Hypothyroidism"
;G("node16rk1fgdvx10882","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11051","code")="snomed:188155002"
;G("node16rk1fgdvx11051","dcterms:title")="Primary malignant neoplasm of lower outer quadrant of female breast"
;G("node16rk1fgdvx11051","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11073","code")="snomed:353295004"
;G("node16rk1fgdvx11073","dcterms:title")="Toxic diffuse goiter"
;G("node16rk1fgdvx11073","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11089","code")="snomed:54302000"
;G("node16rk1fgdvx11089","dcterms:title")="Disorder of breast"
;G("node16rk1fgdvx11089","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11351","code")="snomed:38341003"
;G("node16rk1fgdvx11351","dcterms:title")="Essential hypertension"
;G("node16rk1fgdvx11351","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11390","code")="snomed:44054006"
;G("node16rk1fgdvx11390","dcterms:title")="Diabetes mellitus type 2"
;G("node16rk1fgdvx11390","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11558","code")="snomed:195967001"
;G("node16rk1fgdvx11558","dcterms:title")="Asthma"
;G("node16rk1fgdvx11558","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11578","code")="snomed:254837009"
;G("node16rk1fgdvx11578","dcterms:title")="Primary malignant neoplasm of female breast"
;G("node16rk1fgdvx11578","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11687","code")="snomed:8517006"
;G("node16rk1fgdvx11687","dcterms:title")="History of tobacco use"
;G("node16rk1fgdvx11687","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11716","code")="snomed:55822004"
;G("node16rk1fgdvx11716","dcterms:title")="Hyperlipidemia"
;G("node16rk1fgdvx11716","rdf:type")="sp:CodedValue"
;G("smart:1577780/problems/69560e4721e1","belongsTo")="smart:1577780"
;G("smart:1577780/problems/69560e4721e1","problemName")="node16rk1fgdvx11089"
;G("smart:1577780/problems/69560e4721e1","rdf:type")="sp:Problem"
;G("smart:1577780/problems/69560e4721e1","startDate")="2005-08-02"
;G("smart:1577780/problems/06ef10c4e92c","belongsTo")="smart:1577780"
;G("smart:1577780/problems/06ef10c4e92c","problemName")="node16rk1fgdvx11051"
;G("smart:1577780/problems/06ef10c4e92c","rdf:type")="sp:Problem"
;G("smart:1577780/problems/06ef10c4e92c","startDate")="2006-02-20"
;G("smart:1577780/problems/9894ba9dfe5a","belongsTo")="smart:1577780"
;G("smart:1577780/problems/9894ba9dfe5a","problemName")="node16rk1fgdvx11578"
;G("smart:1577780/problems/9894ba9dfe5a","rdf:type")="sp:Problem"
;G("smart:1577780/problems/9894ba9dfe5a","startDate")="2005-08-22"
;G("smart:1577780/problems/c109aa7a0675","belongsTo")="smart:1577780"
;G("smart:1577780/problems/c109aa7a0675","problemName")="node16rk1fgdvx11558"
;G("smart:1577780/problems/c109aa7a0675","rdf:type")="sp:Problem"
;G("smart:1577780/problems/c109aa7a0675","startDate")="2005-09-22"
;G("smart:1577780/problems/1c50100614a2","belongsTo")="smart:1577780"
;G("smart:1577780/problems/1c50100614a2","problemName")="node16rk1fgdvx11073"
;G("smart:1577780/problems/1c50100614a2","rdf:type")="sp:Problem"
;G("smart:1577780/problems/1c50100614a2","startDate")="2007-02-21"
;G("smart:1577780/problems/083dffb2c4a0","belongsTo")="smart:1577780"
;G("smart:1577780/problems/083dffb2c4a0","problemName")="node16rk1fgdvx11390"
;G("smart:1577780/problems/083dffb2c4a0","rdf:type")="sp:Problem"
;G("smart:1577780/problems/083dffb2c4a0","startDate")="2007-01-07"
;G("smart:1577780/problems/762b5639a2d1","belongsTo")="smart:1577780"
;G("smart:1577780/problems/762b5639a2d1","problemName")="node16rk1fgdvx11687"
;G("smart:1577780/problems/762b5639a2d1","rdf:type")="sp:Problem"
;G("smart:1577780/problems/762b5639a2d1","startDate")="2006-02-20"
;G("smart:1577780/problems/9dc9053dd6f4","belongsTo")="smart:1577780"
;G("smart:1577780/problems/9dc9053dd6f4","problemName")="node16rk1fgdvx11716"
;G("smart:1577780/problems/9dc9053dd6f4","rdf:type")="sp:Problem"
;G("smart:1577780/problems/9dc9053dd6f4","startDate")="2008-04-08"
;G("smart:1577780/problems/e3fe9b7ee552","belongsTo")="smart:1577780"
;G("smart:1577780/problems/e3fe9b7ee552","problemName")="node16rk1fgdvx10882"
;G("smart:1577780/problems/e3fe9b7ee552","rdf:type")="sp:Problem"
;G("smart:1577780/problems/e3fe9b7ee552","startDate")="2005-10-27"
;G("smart:1577780/problems/9933307e8f95","belongsTo")="smart:1577780"
;G("smart:1577780/problems/9933307e8f95","problemName")="node16rk1fgdvx11351"
;G("smart:1577780/problems/9933307e8f95","rdf:type")="sp:Problem"
;G("smart:1577780/problems/9933307e8f95","startDate")="2005-08-22"
;G("snomed:188155002","dcterms:identifier")=188155002
;G("snomed:188155002","dcterms:title")="Primary malignant neoplasm of lower outer quadrant of female breast"
;G("snomed:188155002","rdf:type")="sp:Code"
;G("snomed:188155002","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:195967001","dcterms:identifier")=195967001
;G("snomed:195967001","dcterms:title")="Asthma"
;G("snomed:195967001","rdf:type")="sp:Code"
;G("snomed:195967001","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:254837009","dcterms:identifier")=254837009
;G("snomed:254837009","dcterms:title")="Primary malignant neoplasm of female breast"
;G("snomed:254837009","rdf:type")="sp:Code"
;G("snomed:254837009","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:353295004","dcterms:identifier")=353295004
;G("snomed:353295004","dcterms:title")="Toxic diffuse goiter"
;G("snomed:353295004","rdf:type")="sp:Code"
;G("snomed:353295004","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:38341003","dcterms:identifier")=38341003
;G("snomed:38341003","dcterms:title")="Essential hypertension"
;G("snomed:38341003","rdf:type")="sp:Code"
;G("snomed:38341003","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:40930008","dcterms:identifier")=40930008
;G("snomed:40930008","dcterms:title")="Hypothyroidism"
;G("snomed:40930008","rdf:type")="sp:Code"
;G("snomed:40930008","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:44054006","dcterms:identifier")=44054006
;G("snomed:44054006","dcterms:title")="Diabetes mellitus type 2"
;G("snomed:44054006","rdf:type")="sp:Code"
;G("snomed:44054006","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:54302000","dcterms:identifier")=54302000
;G("snomed:54302000","dcterms:title")="Disorder of breast"
;G("snomed:54302000","rdf:type")="sp:Code"
;G("snomed:54302000","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:55822004","dcterms:identifier")=55822004
;G("snomed:55822004","dcterms:title")="Hyperlipidemia"
;G("snomed:55822004","rdf:type")="sp:Code"
;G("snomed:55822004","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:8517006","dcterms:identifier")=8517006
;G("snomed:8517006","dcterms:title")="History of tobacco use"
;G("snomed:8517006","rdf:type")="sp:Code"
;G("snomed:8517006","system")="http://purl.bioontology.org/ontology/SNOMEDCT/"
;
PROB(GRTN,C0SARY) ; GRTN, passed by reference,
; is the return name of the graph created. "" if none
; C0SARY is passed in by reference and is the NHIN array of problems
;
I $O(C0SARY("problem",""))="" D Q ;
. I $D(DEBUG) W !,"No Problems"
S GRTN="" ; default to no problems
N C0SGRF
S C0SGRF="vistaSmart:"_ZPATID_"/problems"
I $D(DEBUG) W !,"Processing ",C0SGRF
D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
N FARY S FARY="C0XFARY"
D USEFARY^C0XF2N(FARY)
D VOCINIT^C0XUTIL
;
D STARTADD^C0XF2N ; initialize to create triples
;
N ZI S ZI=""
F S ZI=$O(C0SARY("problem",ZI)) Q:ZI="" D ;
. N LRN,ZR ; ZR is the local array for building the new triples
. S LRN=$NA(C0SARY("problem",ZI)) ; base for values in this lab result
. ;
. N PROBID ; unique Id for this problem
. S PROBID=C0SGRF_"/"_$$LKY17^C0XF2N ; use a random number
. ;
. ; i don't like this because the same problems gets a
. ; different ID every time it's reported. Can't trace it back to VistA
. ; I'd rather be using id@value ie "id@value")="118"
. ;
. N SNOMED S SNOMED=$G(@LRN@("icd@value"))
. N SNOGRF S SNOGRF="snomed:"_SNOMED
. N SNOTIT S SNOTIT=$G(@LRN@("name@value"))
. I $D(DEBUG) D ;
. . W !,"Processing Problem List ",PROBID
. . W !,"problem: ",SNOTIT
. . W !,"code: ",SNOMED
. ;
. ; first do the base result graph
. ;
. S ZR("rdf:type")="sp:Problem"
. S ZR("sp:belongsTo")=C0SGRF ; the subject for this patient's problems
. ; ie /vista/smart/99912345/problems
. ;
. N PROBNAME S PROBNAME=$$ANONS^C0XF2N ; new node for problem name
. S ZR("sp:problemName")=PROBNAME
. ;
. N STARTDT S STARTDT=$$SPDATE^C0SUTIL($G(@LRN@("entered@value")))
. S ZR("sp:startDate")=STARTDT
. ;
. D ADDINN^C0XF2N(C0SGRF,PROBID,.ZR) ; addIfNotNull the triples
. K ZR ; clean up
. ;
. ; create the problemName graph
. ;
. S ZR("rdf:type")="sp:CodedValue"
. S ZR("sp:code")="snomed:"_SNOMED
. S ZR("dcterms:title")=$G(@LRN@("name@value"))
. D ADDINN^C0XF2N(C0SGRF,PROBNAME,.ZR)
. K ZR
. ;
. ; create snomed graph
. ;
. S ZR("rdf:type")="sp:Code"
. S ZR("sp:system")="http://purl.bioontology.org/ontology/SNOMEDCT"
. S ZR("dcterms:identifier")=SNOMED
. S ZR("dcterms:title")=SNOTIT
. D ADDINN^C0XF2N(C0SGRF,SNOGRF,.ZR)
. K ZR
. ;
D BULKLOAD^C0XF2N(.C0XFDA)
S GRTN=C0SGRF
Q
;

686
p/C0SPROB2.m
View File

@ -1,343 +1,343 @@
C0SPROB ; GPL - Smart Problem Processing ;5/01/12 17:05
;;0.1;C0S;nopatch;noreleasedate;Build 2
;Copyright 2012 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;
;This program is free software; you can redistribute it and/or modify
;it under the terms of the GNU General Public License as published by
;the Free Software Foundation; either version 2 of the License, or
;(at your option) any later version.
;
;This program is distributed in the hope that it will be useful,
;but WITHOUT ANY WARRANTY; without even the implied warranty of
;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;GNU General Public License for more details.
;
;You should have received a copy of the GNU General Public License along
;with this program; if not, write to the Free Software Foundation, Inc.,
;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
;
Q
;
; sample VistA NHIN problem list
;
;^TMP("C0STBL",91,"problem",1,"acuity@value")="C"
;^TMP("C0STBL",91,"problem",1,"entered@value")=3110531
;^TMP("C0STBL",91,"problem",1,"facility@code")=100
;^TMP("C0STBL",91,"problem",1,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",1,"icd@value")=414.9
;^TMP("C0STBL",91,"problem",1,"id@value")=100
;^TMP("C0STBL",91,"problem",1,"location@value")="DR OFFICE"
;^TMP("C0STBL",91,"problem",1,"name@value")="Coronary Artery Disease"
;^TMP("C0STBL",91,"problem",1,"onset@value")=3100201
;^TMP("C0STBL",91,"problem",1,"provider@code")=63
;^TMP("C0STBL",91,"problem",1,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",1,"removed@value")=0
;^TMP("C0STBL",91,"problem",1,"sc@value")=0
;^TMP("C0STBL",91,"problem",1,"status@value")="A"
;^TMP("C0STBL",91,"problem",1,"unverified@value")=0
;^TMP("C0STBL",91,"problem",1,"updated@value")=3110531
;^TMP("C0STBL",91,"problem",2,"acuity@value")="C"
;^TMP("C0STBL",91,"problem",2,"entered@value")=3110602
;^TMP("C0STBL",91,"problem",2,"facility@code")=100
;^TMP("C0STBL",91,"problem",2,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",2,"icd@value")=780.2
;^TMP("C0STBL",91,"problem",2,"id@value")=108
;^TMP("C0STBL",91,"problem",2,"name@value")="Syncope and collapse"
;^TMP("C0STBL",91,"problem",2,"onset@value")=3110102
;^TMP("C0STBL",91,"problem",2,"provider@code")=63
;^TMP("C0STBL",91,"problem",2,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",2,"removed@value")=0
;^TMP("C0STBL",91,"problem",2,"sc@value")=0
;^TMP("C0STBL",91,"problem",2,"status@value")="A"
;^TMP("C0STBL",91,"problem",2,"unverified@value")=0
;^TMP("C0STBL",91,"problem",2,"updated@value")=3110602
;^TMP("C0STBL",91,"problem",3,"acuity@value")="C"
;^TMP("C0STBL",91,"problem",3,"entered@value")=3110602
;^TMP("C0STBL",91,"problem",3,"facility@code")=100
;^TMP("C0STBL",91,"problem",3,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",3,"icd@value")=433.91
;^TMP("C0STBL",91,"problem",3,"id@value")=109
;^TMP("C0STBL",91,"problem",3,"name@value")="Occlusion and Stenosis of Unspecifid Precerebral Artery with Cerebral Infarctio"
;^TMP("C0STBL",91,"problem",3,"onset@value")=3100101
;^TMP("C0STBL",91,"problem",3,"provider@code")=63
;^TMP("C0STBL",91,"problem",3,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",3,"removed@value")=0
;^TMP("C0STBL",91,"problem",3,"sc@value")=0
;^TMP("C0STBL",91,"problem",3,"status@value")="A"
;^TMP("C0STBL",91,"problem",3,"unverified@value")=0
;^TMP("C0STBL",91,"problem",3,"updated@value")=3110602
;^TMP("C0STBL",91,"problem",4,"entered@value")=3110603
;^TMP("C0STBL",91,"problem",4,"facility@code")=100
;^TMP("C0STBL",91,"problem",4,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",4,"icd@value")="00.66"
;^TMP("C0STBL",91,"problem",4,"id@value")=115
;^TMP("C0STBL",91,"problem",4,"location@value")="DR OFFICE"
;^TMP("C0STBL",91,"problem",4,"name@value")="00.66"
;^TMP("C0STBL",91,"problem",4,"provider@code")=63
;^TMP("C0STBL",91,"problem",4,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",4,"removed@value")=0
;^TMP("C0STBL",91,"problem",4,"status@value")="A"
;^TMP("C0STBL",91,"problem",4,"unverified@value")=0
;^TMP("C0STBL",91,"problem",4,"updated@value")=3110603
;^TMP("C0STBL",91,"problem",5,"entered@value")=3110603
;^TMP("C0STBL",91,"problem",5,"facility@code")=100
;^TMP("C0STBL",91,"problem",5,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",5,"icd@value")=37.21
;^TMP("C0STBL",91,"problem",5,"id@value")=116
;^TMP("C0STBL",91,"problem",5,"location@value")="DR OFFICE"
;^TMP("C0STBL",91,"problem",5,"name@value")=37.21
;^TMP("C0STBL",91,"problem",5,"provider@code")=63
;^TMP("C0STBL",91,"problem",5,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",5,"removed@value")=0
;^TMP("C0STBL",91,"problem",5,"status@value")="A"
;^TMP("C0STBL",91,"problem",5,"unverified@value")=0
;^TMP("C0STBL",91,"problem",5,"updated@value")=3110603
;^TMP("C0STBL",91,"problem",6,"entered@value")=3110603
;^TMP("C0STBL",91,"problem",6,"facility@code")=100
;^TMP("C0STBL",91,"problem",6,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",6,"icd@value")=81.51
;^TMP("C0STBL",91,"problem",6,"id@value")=117
;^TMP("C0STBL",91,"problem",6,"location@value")="DR OFFICE"
;^TMP("C0STBL",91,"problem",6,"name@value")=81.51
;^TMP("C0STBL",91,"problem",6,"provider@code")=63
;^TMP("C0STBL",91,"problem",6,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",6,"removed@value")=0
;^TMP("C0STBL",91,"problem",6,"status@value")="A"
;^TMP("C0STBL",91,"problem",6,"unverified@value")=0
;^TMP("C0STBL",91,"problem",6,"updated@value")=3110603
;^TMP("C0STBL",91,"problem",7,"entered@value")=3110603
;^TMP("C0STBL",91,"problem",7,"facility@code")=100
;^TMP("C0STBL",91,"problem",7,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",7,"icd@value")=47.09
;^TMP("C0STBL",91,"problem",7,"id@value")=118
;^TMP("C0STBL",91,"problem",7,"location@value")="DR OFFICE"
;^TMP("C0STBL",91,"problem",7,"name@value")=47.09
;^TMP("C0STBL",91,"problem",7,"provider@code")=63
;^TMP("C0STBL",91,"problem",7,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",7,"removed@value")=0
;^TMP("C0STBL",91,"problem",7,"status@value")="A"
;^TMP("C0STBL",91,"problem",7,"unverified@value")=0
;^TMP("C0STBL",91,"problem",7,"updated@value")=3110603
;^TMP("C0STBL",91,"problem",8,"entered@value")=3110603
;^TMP("C0STBL",91,"problem",8,"facility@code")=100
;^TMP("C0STBL",91,"problem",8,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",8,"icd@value")="250.00"
;^TMP("C0STBL",91,"problem",8,"id@value")=119
;^TMP("C0STBL",91,"problem",8,"location@value")="DR OFFICE"
;^TMP("C0STBL",91,"problem",8,"name@value")="Diabetes Mellitus without mentionof Complication, type II or unspecified type,"
;^TMP("C0STBL",91,"problem",8,"provider@code")=63
;^TMP("C0STBL",91,"problem",8,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",8,"removed@value")=0
;^TMP("C0STBL",91,"problem",8,"status@value")="A"
;^TMP("C0STBL",91,"problem",8,"unverified@value")=0
;^TMP("C0STBL",91,"problem",8,"updated@value")=3110603
;
; sample Smart lab result triples
;
;G("node16rk1fgdvx10882","code")="snomed:40930008"
;G("node16rk1fgdvx10882","dcterms:title")="Hypothyroidism"
;G("node16rk1fgdvx10882","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11051","code")="snomed:188155002"
;G("node16rk1fgdvx11051","dcterms:title")="Primary malignant neoplasm of lower outer quadrant of female breast"
;G("node16rk1fgdvx11051","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11073","code")="snomed:353295004"
;G("node16rk1fgdvx11073","dcterms:title")="Toxic diffuse goiter"
;G("node16rk1fgdvx11073","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11089","code")="snomed:54302000"
;G("node16rk1fgdvx11089","dcterms:title")="Disorder of breast"
;G("node16rk1fgdvx11089","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11351","code")="snomed:38341003"
;G("node16rk1fgdvx11351","dcterms:title")="Essential hypertension"
;G("node16rk1fgdvx11351","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11390","code")="snomed:44054006"
;G("node16rk1fgdvx11390","dcterms:title")="Diabetes mellitus type 2"
;G("node16rk1fgdvx11390","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11558","code")="snomed:195967001"
;G("node16rk1fgdvx11558","dcterms:title")="Asthma"
;G("node16rk1fgdvx11558","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11578","code")="snomed:254837009"
;G("node16rk1fgdvx11578","dcterms:title")="Primary malignant neoplasm of female breast"
;G("node16rk1fgdvx11578","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11687","code")="snomed:8517006"
;G("node16rk1fgdvx11687","dcterms:title")="History of tobacco use"
;G("node16rk1fgdvx11687","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11716","code")="snomed:55822004"
;G("node16rk1fgdvx11716","dcterms:title")="Hyperlipidemia"
;G("node16rk1fgdvx11716","rdf:type")="sp:CodedValue"
;G("smart:1577780/problems/69560e4721e1","belongsTo")="smart:1577780"
;G("smart:1577780/problems/69560e4721e1","problemName")="node16rk1fgdvx11089"
;G("smart:1577780/problems/69560e4721e1","rdf:type")="sp:Problem"
;G("smart:1577780/problems/69560e4721e1","startDate")="2005-08-02"
;G("smart:1577780/problems/06ef10c4e92c","belongsTo")="smart:1577780"
;G("smart:1577780/problems/06ef10c4e92c","problemName")="node16rk1fgdvx11051"
;G("smart:1577780/problems/06ef10c4e92c","rdf:type")="sp:Problem"
;G("smart:1577780/problems/06ef10c4e92c","startDate")="2006-02-20"
;G("smart:1577780/problems/9894ba9dfe5a","belongsTo")="smart:1577780"
;G("smart:1577780/problems/9894ba9dfe5a","problemName")="node16rk1fgdvx11578"
;G("smart:1577780/problems/9894ba9dfe5a","rdf:type")="sp:Problem"
;G("smart:1577780/problems/9894ba9dfe5a","startDate")="2005-08-22"
;G("smart:1577780/problems/c109aa7a0675","belongsTo")="smart:1577780"
;G("smart:1577780/problems/c109aa7a0675","problemName")="node16rk1fgdvx11558"
;G("smart:1577780/problems/c109aa7a0675","rdf:type")="sp:Problem"
;G("smart:1577780/problems/c109aa7a0675","startDate")="2005-09-22"
;G("smart:1577780/problems/1c50100614a2","belongsTo")="smart:1577780"
;G("smart:1577780/problems/1c50100614a2","problemName")="node16rk1fgdvx11073"
;G("smart:1577780/problems/1c50100614a2","rdf:type")="sp:Problem"
;G("smart:1577780/problems/1c50100614a2","startDate")="2007-02-21"
;G("smart:1577780/problems/083dffb2c4a0","belongsTo")="smart:1577780"
;G("smart:1577780/problems/083dffb2c4a0","problemName")="node16rk1fgdvx11390"
;G("smart:1577780/problems/083dffb2c4a0","rdf:type")="sp:Problem"
;G("smart:1577780/problems/083dffb2c4a0","startDate")="2007-01-07"
;G("smart:1577780/problems/762b5639a2d1","belongsTo")="smart:1577780"
;G("smart:1577780/problems/762b5639a2d1","problemName")="node16rk1fgdvx11687"
;G("smart:1577780/problems/762b5639a2d1","rdf:type")="sp:Problem"
;G("smart:1577780/problems/762b5639a2d1","startDate")="2006-02-20"
;G("smart:1577780/problems/9dc9053dd6f4","belongsTo")="smart:1577780"
;G("smart:1577780/problems/9dc9053dd6f4","problemName")="node16rk1fgdvx11716"
;G("smart:1577780/problems/9dc9053dd6f4","rdf:type")="sp:Problem"
;G("smart:1577780/problems/9dc9053dd6f4","startDate")="2008-04-08"
;G("smart:1577780/problems/e3fe9b7ee552","belongsTo")="smart:1577780"
;G("smart:1577780/problems/e3fe9b7ee552","problemName")="node16rk1fgdvx10882"
;G("smart:1577780/problems/e3fe9b7ee552","rdf:type")="sp:Problem"
;G("smart:1577780/problems/e3fe9b7ee552","startDate")="2005-10-27"
;G("smart:1577780/problems/9933307e8f95","belongsTo")="smart:1577780"
;G("smart:1577780/problems/9933307e8f95","problemName")="node16rk1fgdvx11351"
;G("smart:1577780/problems/9933307e8f95","rdf:type")="sp:Problem"
;G("smart:1577780/problems/9933307e8f95","startDate")="2005-08-22"
;G("snomed:188155002","dcterms:identifier")=188155002
;G("snomed:188155002","dcterms:title")="Primary malignant neoplasm of lower outer quadrant of female breast"
;G("snomed:188155002","rdf:type")="sp:Code"
;G("snomed:188155002","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:195967001","dcterms:identifier")=195967001
;G("snomed:195967001","dcterms:title")="Asthma"
;G("snomed:195967001","rdf:type")="sp:Code"
;G("snomed:195967001","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:254837009","dcterms:identifier")=254837009
;G("snomed:254837009","dcterms:title")="Primary malignant neoplasm of female breast"
;G("snomed:254837009","rdf:type")="sp:Code"
;G("snomed:254837009","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:353295004","dcterms:identifier")=353295004
;G("snomed:353295004","dcterms:title")="Toxic diffuse goiter"
;G("snomed:353295004","rdf:type")="sp:Code"
;G("snomed:353295004","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:38341003","dcterms:identifier")=38341003
;G("snomed:38341003","dcterms:title")="Essential hypertension"
;G("snomed:38341003","rdf:type")="sp:Code"
;G("snomed:38341003","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:40930008","dcterms:identifier")=40930008
;G("snomed:40930008","dcterms:title")="Hypothyroidism"
;G("snomed:40930008","rdf:type")="sp:Code"
;G("snomed:40930008","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:44054006","dcterms:identifier")=44054006
;G("snomed:44054006","dcterms:title")="Diabetes mellitus type 2"
;G("snomed:44054006","rdf:type")="sp:Code"
;G("snomed:44054006","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:54302000","dcterms:identifier")=54302000
;G("snomed:54302000","dcterms:title")="Disorder of breast"
;G("snomed:54302000","rdf:type")="sp:Code"
;G("snomed:54302000","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:55822004","dcterms:identifier")=55822004
;G("snomed:55822004","dcterms:title")="Hyperlipidemia"
;G("snomed:55822004","rdf:type")="sp:Code"
;G("snomed:55822004","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:8517006","dcterms:identifier")=8517006
;G("snomed:8517006","dcterms:title")="History of tobacco use"
;G("snomed:8517006","rdf:type")="sp:Code"
;G("snomed:8517006","system")="http://purl.bioontology.org/ontology/SNOMEDCT/"
;
PROB(GRTN,C0SARY) ; GRTN, passed by reference,
; is the return name of the graph created. "" if none
; C0SARY is passed in by reference and is the NHIN array of problems
;
I $O(C0SARY("problem",""))="" D Q ;
. I $D(DEBUG) W !,"No Problems"
S GRTN="" ; default to no problems
N C0SGRF
S C0SGRF="vistaSmart:"_ZPATID_"/problems"
I $D(DEBUG) W !,"Processing ",C0SGRF
D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
N FARY S FARY="C0XFARY"
D USEFARY^C0XF2N(FARY)
D VOCINIT^C0XUTIL
;
D STARTADD^C0XF2N ; initialize to create triples
;
N ZI S ZI=""
F S ZI=$O(C0SARY("problem",ZI)) Q:ZI="" D ;
. N LRN,ZR ; ZR is the local array for building the new triples
. S LRN=$NA(C0SARY("problem",ZI)) ; base for values in this lab result
. ;
. N PROBID ; unique Id for this problem
. S PROBID=C0SGRF_"/"_$$LKY17^C0XF2N ; use a random number
. ;
. ; i don't like this because the same problems gets a
. ; different ID every time it's reported. Can't trace it back to VistA
. ; I'd rather be using id@value ie "id@value")="118"
. ;
. N SNOMED,ICD S ICD=$G(@LRN@("icd@value"))
. S SNOMED=$$SNOMED(ICD) ; look up the snomed code in the map
. N SNOGRF ; graph for SNOMED code
. I SNOMED="" D ;
. . S SNOMED=ICD ; if not found, return the ICD code
. . S SNOGRF="icd9:"_SNOMED
. E S SNOGRF="snomed:"_SNOMED
. N SNOTIT S SNOTIT=$G(@LRN@("name@value"))
. I $D(DEBUG) D ;
. . W !,"Processing Problem List ",PROBID
. . W !,"problem: ",SNOTIT
. . W !,"code: ",SNOMED
. ;
. ; first do the base result graph
. ;
. S ZR("rdf:type")="sp:Problem"
. S ZR("sp:belongsTo")=C0SGRF ; the subject for this patient's problems
. ; ie /vista/smart/99912345/problems
. ;
. N PROBNAME S PROBNAME=$$ANONS^C0XF2N ; new node for problem name
. S ZR("sp:problemName")=PROBNAME
. ;
. N STARTDT S STARTDT=$$SPDATE^C0SUTIL($G(@LRN@("entered@value")))
. S ZR("sp:startDate")=STARTDT
. ;
. D ADDINN^C0XF2N(C0SGRF,PROBID,.ZR) ; addIfNotNull the triples
. K ZR ; clean up
. ;
. ; create the problemName graph
. ;
. S ZR("rdf:type")="sp:CodedValue"
. ;S ZR("sp:code")="snomed:"_SNOMED
. S ZR("sp:code")=SNOGRF
. S ZR("dcterms:title")=$G(@LRN@("name@value"))
. D ADDINN^C0XF2N(C0SGRF,PROBNAME,.ZR)
. K ZR
. ;
. ; create snomed graph
. ;
. S ZR("rdf:type")="sp:Code"
. S ZR("sp:system")="http://purl.bioontology.org/ontology/SNOMEDCT"
. I SNOGRF["icd9" S ZR("sp:system")="http://purl.bioontology.org/ontology/ICD9"
. S ZR("dcterms:identifier")=SNOMED
. S ZR("dcterms:title")=SNOTIT
. D ADDINN^C0XF2N(C0SGRF,SNOGRF,.ZR)
. K ZR
. ;
D BULKLOAD^C0XF2N(.C0XFDA)
S GRTN=C0SGRF
Q
;
SNOMED(ZICD) ; extrinsic which returns SNOMED code given an ICD9 code
; requires the mapping table installed in the triplestore
;
N ZSN,ZARY,ZSUB,ZSUBS
I $E(ZICD,$L(ZICD))="." S ZICD=$P(ZICD,".",1) ; handle trailing dots
D subjects^C0XGET1(.ZSUBS,"cg:ontology#code",ZICD) ; subjects with the ICD9 code
S ZSUB=$O(ZSUBS("")) ; pick the first one
I ZSUB="" Q ""
D objects^C0XGET1(.ZARY,ZSUB,"cg:ontology#toCode")
S ZSN=$O(ZARY(""))
I $D(DEBUG) W !,ZSN," ",$$object^C0XGET1(ZSUB,"rdfs:label")
Q ZSN
;
C0SPROB ; GPL - Smart Problem Processing ;5/01/12 17:05
;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 4
;Copyright 2012 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;
;This program is free software; you can redistribute it and/or modify
;it under the terms of the GNU General Public License as published by
;the Free Software Foundation; either version 2 of the License, or
;(at your option) any later version.
;
;This program is distributed in the hope that it will be useful,
;but WITHOUT ANY WARRANTY; without even the implied warranty of
;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;GNU General Public License for more details.
;
;You should have received a copy of the GNU General Public License along
;with this program; if not, write to the Free Software Foundation, Inc.,
;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
;
Q
;
; sample VistA NHIN problem list
;
;^TMP("C0STBL",91,"problem",1,"acuity@value")="C"
;^TMP("C0STBL",91,"problem",1,"entered@value")=3110531
;^TMP("C0STBL",91,"problem",1,"facility@code")=100
;^TMP("C0STBL",91,"problem",1,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",1,"icd@value")=414.9
;^TMP("C0STBL",91,"problem",1,"id@value")=100
;^TMP("C0STBL",91,"problem",1,"location@value")="DR OFFICE"
;^TMP("C0STBL",91,"problem",1,"name@value")="Coronary Artery Disease"
;^TMP("C0STBL",91,"problem",1,"onset@value")=3100201
;^TMP("C0STBL",91,"problem",1,"provider@code")=63
;^TMP("C0STBL",91,"problem",1,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",1,"removed@value")=0
;^TMP("C0STBL",91,"problem",1,"sc@value")=0
;^TMP("C0STBL",91,"problem",1,"status@value")="A"
;^TMP("C0STBL",91,"problem",1,"unverified@value")=0
;^TMP("C0STBL",91,"problem",1,"updated@value")=3110531
;^TMP("C0STBL",91,"problem",2,"acuity@value")="C"
;^TMP("C0STBL",91,"problem",2,"entered@value")=3110602
;^TMP("C0STBL",91,"problem",2,"facility@code")=100
;^TMP("C0STBL",91,"problem",2,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",2,"icd@value")=780.2
;^TMP("C0STBL",91,"problem",2,"id@value")=108
;^TMP("C0STBL",91,"problem",2,"name@value")="Syncope and collapse"
;^TMP("C0STBL",91,"problem",2,"onset@value")=3110102
;^TMP("C0STBL",91,"problem",2,"provider@code")=63
;^TMP("C0STBL",91,"problem",2,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",2,"removed@value")=0
;^TMP("C0STBL",91,"problem",2,"sc@value")=0
;^TMP("C0STBL",91,"problem",2,"status@value")="A"
;^TMP("C0STBL",91,"problem",2,"unverified@value")=0
;^TMP("C0STBL",91,"problem",2,"updated@value")=3110602
;^TMP("C0STBL",91,"problem",3,"acuity@value")="C"
;^TMP("C0STBL",91,"problem",3,"entered@value")=3110602
;^TMP("C0STBL",91,"problem",3,"facility@code")=100
;^TMP("C0STBL",91,"problem",3,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",3,"icd@value")=433.91
;^TMP("C0STBL",91,"problem",3,"id@value")=109
;^TMP("C0STBL",91,"problem",3,"name@value")="Occlusion and Stenosis of Unspecifid Precerebral Artery with Cerebral Infarctio"
;^TMP("C0STBL",91,"problem",3,"onset@value")=3100101
;^TMP("C0STBL",91,"problem",3,"provider@code")=63
;^TMP("C0STBL",91,"problem",3,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",3,"removed@value")=0
;^TMP("C0STBL",91,"problem",3,"sc@value")=0
;^TMP("C0STBL",91,"problem",3,"status@value")="A"
;^TMP("C0STBL",91,"problem",3,"unverified@value")=0
;^TMP("C0STBL",91,"problem",3,"updated@value")=3110602
;^TMP("C0STBL",91,"problem",4,"entered@value")=3110603
;^TMP("C0STBL",91,"problem",4,"facility@code")=100
;^TMP("C0STBL",91,"problem",4,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",4,"icd@value")="00.66"
;^TMP("C0STBL",91,"problem",4,"id@value")=115
;^TMP("C0STBL",91,"problem",4,"location@value")="DR OFFICE"
;^TMP("C0STBL",91,"problem",4,"name@value")="00.66"
;^TMP("C0STBL",91,"problem",4,"provider@code")=63
;^TMP("C0STBL",91,"problem",4,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",4,"removed@value")=0
;^TMP("C0STBL",91,"problem",4,"status@value")="A"
;^TMP("C0STBL",91,"problem",4,"unverified@value")=0
;^TMP("C0STBL",91,"problem",4,"updated@value")=3110603
;^TMP("C0STBL",91,"problem",5,"entered@value")=3110603
;^TMP("C0STBL",91,"problem",5,"facility@code")=100
;^TMP("C0STBL",91,"problem",5,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",5,"icd@value")=37.21
;^TMP("C0STBL",91,"problem",5,"id@value")=116
;^TMP("C0STBL",91,"problem",5,"location@value")="DR OFFICE"
;^TMP("C0STBL",91,"problem",5,"name@value")=37.21
;^TMP("C0STBL",91,"problem",5,"provider@code")=63
;^TMP("C0STBL",91,"problem",5,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",5,"removed@value")=0
;^TMP("C0STBL",91,"problem",5,"status@value")="A"
;^TMP("C0STBL",91,"problem",5,"unverified@value")=0
;^TMP("C0STBL",91,"problem",5,"updated@value")=3110603
;^TMP("C0STBL",91,"problem",6,"entered@value")=3110603
;^TMP("C0STBL",91,"problem",6,"facility@code")=100
;^TMP("C0STBL",91,"problem",6,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",6,"icd@value")=81.51
;^TMP("C0STBL",91,"problem",6,"id@value")=117
;^TMP("C0STBL",91,"problem",6,"location@value")="DR OFFICE"
;^TMP("C0STBL",91,"problem",6,"name@value")=81.51
;^TMP("C0STBL",91,"problem",6,"provider@code")=63
;^TMP("C0STBL",91,"problem",6,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",6,"removed@value")=0
;^TMP("C0STBL",91,"problem",6,"status@value")="A"
;^TMP("C0STBL",91,"problem",6,"unverified@value")=0
;^TMP("C0STBL",91,"problem",6,"updated@value")=3110603
;^TMP("C0STBL",91,"problem",7,"entered@value")=3110603
;^TMP("C0STBL",91,"problem",7,"facility@code")=100
;^TMP("C0STBL",91,"problem",7,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",7,"icd@value")=47.09
;^TMP("C0STBL",91,"problem",7,"id@value")=118
;^TMP("C0STBL",91,"problem",7,"location@value")="DR OFFICE"
;^TMP("C0STBL",91,"problem",7,"name@value")=47.09
;^TMP("C0STBL",91,"problem",7,"provider@code")=63
;^TMP("C0STBL",91,"problem",7,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",7,"removed@value")=0
;^TMP("C0STBL",91,"problem",7,"status@value")="A"
;^TMP("C0STBL",91,"problem",7,"unverified@value")=0
;^TMP("C0STBL",91,"problem",7,"updated@value")=3110603
;^TMP("C0STBL",91,"problem",8,"entered@value")=3110603
;^TMP("C0STBL",91,"problem",8,"facility@code")=100
;^TMP("C0STBL",91,"problem",8,"facility@name")="VOE OFFICE INSTITUTION"
;^TMP("C0STBL",91,"problem",8,"icd@value")="250.00"
;^TMP("C0STBL",91,"problem",8,"id@value")=119
;^TMP("C0STBL",91,"problem",8,"location@value")="DR OFFICE"
;^TMP("C0STBL",91,"problem",8,"name@value")="Diabetes Mellitus without mentionof Complication, type II or unspecified type,"
;^TMP("C0STBL",91,"problem",8,"provider@code")=63
;^TMP("C0STBL",91,"problem",8,"provider@name")="KING,MATTHEW MICHAEL"
;^TMP("C0STBL",91,"problem",8,"removed@value")=0
;^TMP("C0STBL",91,"problem",8,"status@value")="A"
;^TMP("C0STBL",91,"problem",8,"unverified@value")=0
;^TMP("C0STBL",91,"problem",8,"updated@value")=3110603
;
; sample Smart lab result triples
;
;G("node16rk1fgdvx10882","code")="snomed:40930008"
;G("node16rk1fgdvx10882","dcterms:title")="Hypothyroidism"
;G("node16rk1fgdvx10882","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11051","code")="snomed:188155002"
;G("node16rk1fgdvx11051","dcterms:title")="Primary malignant neoplasm of lower outer quadrant of female breast"
;G("node16rk1fgdvx11051","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11073","code")="snomed:353295004"
;G("node16rk1fgdvx11073","dcterms:title")="Toxic diffuse goiter"
;G("node16rk1fgdvx11073","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11089","code")="snomed:54302000"
;G("node16rk1fgdvx11089","dcterms:title")="Disorder of breast"
;G("node16rk1fgdvx11089","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11351","code")="snomed:38341003"
;G("node16rk1fgdvx11351","dcterms:title")="Essential hypertension"
;G("node16rk1fgdvx11351","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11390","code")="snomed:44054006"
;G("node16rk1fgdvx11390","dcterms:title")="Diabetes mellitus type 2"
;G("node16rk1fgdvx11390","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11558","code")="snomed:195967001"
;G("node16rk1fgdvx11558","dcterms:title")="Asthma"
;G("node16rk1fgdvx11558","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11578","code")="snomed:254837009"
;G("node16rk1fgdvx11578","dcterms:title")="Primary malignant neoplasm of female breast"
;G("node16rk1fgdvx11578","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11687","code")="snomed:8517006"
;G("node16rk1fgdvx11687","dcterms:title")="History of tobacco use"
;G("node16rk1fgdvx11687","rdf:type")="sp:CodedValue"
;G("node16rk1fgdvx11716","code")="snomed:55822004"
;G("node16rk1fgdvx11716","dcterms:title")="Hyperlipidemia"
;G("node16rk1fgdvx11716","rdf:type")="sp:CodedValue"
;G("smart:1577780/problems/69560e4721e1","belongsTo")="smart:1577780"
;G("smart:1577780/problems/69560e4721e1","problemName")="node16rk1fgdvx11089"
;G("smart:1577780/problems/69560e4721e1","rdf:type")="sp:Problem"
;G("smart:1577780/problems/69560e4721e1","startDate")="2005-08-02"
;G("smart:1577780/problems/06ef10c4e92c","belongsTo")="smart:1577780"
;G("smart:1577780/problems/06ef10c4e92c","problemName")="node16rk1fgdvx11051"
;G("smart:1577780/problems/06ef10c4e92c","rdf:type")="sp:Problem"
;G("smart:1577780/problems/06ef10c4e92c","startDate")="2006-02-20"
;G("smart:1577780/problems/9894ba9dfe5a","belongsTo")="smart:1577780"
;G("smart:1577780/problems/9894ba9dfe5a","problemName")="node16rk1fgdvx11578"
;G("smart:1577780/problems/9894ba9dfe5a","rdf:type")="sp:Problem"
;G("smart:1577780/problems/9894ba9dfe5a","startDate")="2005-08-22"
;G("smart:1577780/problems/c109aa7a0675","belongsTo")="smart:1577780"
;G("smart:1577780/problems/c109aa7a0675","problemName")="node16rk1fgdvx11558"
;G("smart:1577780/problems/c109aa7a0675","rdf:type")="sp:Problem"
;G("smart:1577780/problems/c109aa7a0675","startDate")="2005-09-22"
;G("smart:1577780/problems/1c50100614a2","belongsTo")="smart:1577780"
;G("smart:1577780/problems/1c50100614a2","problemName")="node16rk1fgdvx11073"
;G("smart:1577780/problems/1c50100614a2","rdf:type")="sp:Problem"
;G("smart:1577780/problems/1c50100614a2","startDate")="2007-02-21"
;G("smart:1577780/problems/083dffb2c4a0","belongsTo")="smart:1577780"
;G("smart:1577780/problems/083dffb2c4a0","problemName")="node16rk1fgdvx11390"
;G("smart:1577780/problems/083dffb2c4a0","rdf:type")="sp:Problem"
;G("smart:1577780/problems/083dffb2c4a0","startDate")="2007-01-07"
;G("smart:1577780/problems/762b5639a2d1","belongsTo")="smart:1577780"
;G("smart:1577780/problems/762b5639a2d1","problemName")="node16rk1fgdvx11687"
;G("smart:1577780/problems/762b5639a2d1","rdf:type")="sp:Problem"
;G("smart:1577780/problems/762b5639a2d1","startDate")="2006-02-20"
;G("smart:1577780/problems/9dc9053dd6f4","belongsTo")="smart:1577780"
;G("smart:1577780/problems/9dc9053dd6f4","problemName")="node16rk1fgdvx11716"
;G("smart:1577780/problems/9dc9053dd6f4","rdf:type")="sp:Problem"
;G("smart:1577780/problems/9dc9053dd6f4","startDate")="2008-04-08"
;G("smart:1577780/problems/e3fe9b7ee552","belongsTo")="smart:1577780"
;G("smart:1577780/problems/e3fe9b7ee552","problemName")="node16rk1fgdvx10882"
;G("smart:1577780/problems/e3fe9b7ee552","rdf:type")="sp:Problem"
;G("smart:1577780/problems/e3fe9b7ee552","startDate")="2005-10-27"
;G("smart:1577780/problems/9933307e8f95","belongsTo")="smart:1577780"
;G("smart:1577780/problems/9933307e8f95","problemName")="node16rk1fgdvx11351"
;G("smart:1577780/problems/9933307e8f95","rdf:type")="sp:Problem"
;G("smart:1577780/problems/9933307e8f95","startDate")="2005-08-22"
;G("snomed:188155002","dcterms:identifier")=188155002
;G("snomed:188155002","dcterms:title")="Primary malignant neoplasm of lower outer quadrant of female breast"
;G("snomed:188155002","rdf:type")="sp:Code"
;G("snomed:188155002","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:195967001","dcterms:identifier")=195967001
;G("snomed:195967001","dcterms:title")="Asthma"
;G("snomed:195967001","rdf:type")="sp:Code"
;G("snomed:195967001","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:254837009","dcterms:identifier")=254837009
;G("snomed:254837009","dcterms:title")="Primary malignant neoplasm of female breast"
;G("snomed:254837009","rdf:type")="sp:Code"
;G("snomed:254837009","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:353295004","dcterms:identifier")=353295004
;G("snomed:353295004","dcterms:title")="Toxic diffuse goiter"
;G("snomed:353295004","rdf:type")="sp:Code"
;G("snomed:353295004","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:38341003","dcterms:identifier")=38341003
;G("snomed:38341003","dcterms:title")="Essential hypertension"
;G("snomed:38341003","rdf:type")="sp:Code"
;G("snomed:38341003","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:40930008","dcterms:identifier")=40930008
;G("snomed:40930008","dcterms:title")="Hypothyroidism"
;G("snomed:40930008","rdf:type")="sp:Code"
;G("snomed:40930008","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:44054006","dcterms:identifier")=44054006
;G("snomed:44054006","dcterms:title")="Diabetes mellitus type 2"
;G("snomed:44054006","rdf:type")="sp:Code"
;G("snomed:44054006","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:54302000","dcterms:identifier")=54302000
;G("snomed:54302000","dcterms:title")="Disorder of breast"
;G("snomed:54302000","rdf:type")="sp:Code"
;G("snomed:54302000","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:55822004","dcterms:identifier")=55822004
;G("snomed:55822004","dcterms:title")="Hyperlipidemia"
;G("snomed:55822004","rdf:type")="sp:Code"
;G("snomed:55822004","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
;G("snomed:8517006","dcterms:identifier")=8517006
;G("snomed:8517006","dcterms:title")="History of tobacco use"
;G("snomed:8517006","rdf:type")="sp:Code"
;G("snomed:8517006","system")="http://purl.bioontology.org/ontology/SNOMEDCT/"
;
PROB(GRTN,C0SARY) ; GRTN, passed by reference,
; is the return name of the graph created. "" if none
; C0SARY is passed in by reference and is the NHIN array of problems
;
I $O(C0SARY("problem",""))="" D Q ;
. I $D(DEBUG) W !,"No Problems"
S GRTN="" ; default to no problems
N C0SGRF
S C0SGRF="vistaSmart:"_ZPATID_"/problems"
I $D(DEBUG) W !,"Processing ",C0SGRF
D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
N FARY S FARY="C0XFARY"
D USEFARY^C0XF2N(FARY)
D VOCINIT^C0XUTIL
;
D STARTADD^C0XF2N ; initialize to create triples
;
N ZI S ZI=""
F S ZI=$O(C0SARY("problem",ZI)) Q:ZI="" D ;
. N LRN,ZR ; ZR is the local array for building the new triples
. S LRN=$NA(C0SARY("problem",ZI)) ; base for values in this lab result
. ;
. N PROBID ; unique Id for this problem
. S PROBID=C0SGRF_"/"_$$LKY17^C0XF2N ; use a random number
. ;
. ; i don't like this because the same problems gets a
. ; different ID every time it's reported. Can't trace it back to VistA
. ; I'd rather be using id@value ie "id@value")="118"
. ;
. N SNOMED,ICD S ICD=$G(@LRN@("icd@value"))
. S SNOMED=$$SNOMED(ICD) ; look up the snomed code in the map
. N SNOGRF ; graph for SNOMED code
. I SNOMED="" D ;
. . S SNOMED=ICD ; if not found, return the ICD code
. . S SNOGRF="icd9:"_SNOMED
. E S SNOGRF="snomed:"_SNOMED
. N SNOTIT S SNOTIT=$G(@LRN@("name@value"))
. I $D(DEBUG) D ;
. . W !,"Processing Problem List ",PROBID
. . W !,"problem: ",SNOTIT
. . W !,"code: ",SNOMED
. ;
. ; first do the base result graph
. ;
. S ZR("rdf:type")="sp:Problem"
. S ZR("sp:belongsTo")=C0SGRF ; the subject for this patient's problems
. ; ie /vista/smart/99912345/problems
. ;
. N PROBNAME S PROBNAME=$$ANONS^C0XF2N ; new node for problem name
. S ZR("sp:problemName")=PROBNAME
. ;
. N STARTDT S STARTDT=$$SPDATE^C0SUTIL($G(@LRN@("entered@value")))
. S ZR("sp:startDate")=STARTDT
. ;
. D ADDINN^C0XF2N(C0SGRF,PROBID,.ZR) ; addIfNotNull the triples
. K ZR ; clean up
. ;
. ; create the problemName graph
. ;
. S ZR("rdf:type")="sp:CodedValue"
. ;S ZR("sp:code")="snomed:"_SNOMED
. S ZR("sp:code")=SNOGRF
. S ZR("dcterms:title")=$G(@LRN@("name@value"))
. D ADDINN^C0XF2N(C0SGRF,PROBNAME,.ZR)
. K ZR
. ;
. ; create snomed graph
. ;
. S ZR("rdf:type")="sp:Code"
. S ZR("sp:system")="http://purl.bioontology.org/ontology/SNOMEDCT"
. I SNOGRF["icd9" S ZR("sp:system")="http://purl.bioontology.org/ontology/ICD9"
. S ZR("dcterms:identifier")=SNOMED
. S ZR("dcterms:title")=SNOTIT
. D ADDINN^C0XF2N(C0SGRF,SNOGRF,.ZR)
. K ZR
. ;
D BULKLOAD^C0XF2N(.C0XFDA)
S GRTN=C0SGRF
Q
;
SNOMED(ZICD) ; extrinsic which returns SNOMED code given an ICD9 code
; requires the mapping table installed in the triplestore
;
N ZSN,ZARY,ZSUB,ZSUBS
I $E(ZICD,$L(ZICD))="." S ZICD=$P(ZICD,".",1) ; handle trailing dots
D subjects^C0XGET1(.ZSUBS,"cg:ontology#code",ZICD) ; subjects with the ICD9 code
S ZSUB=$O(ZSUBS("")) ; pick the first one
I ZSUB="" Q ""
D objects^C0XGET1(.ZARY,ZSUB,"cg:ontology#toCode")
S ZSN=$O(ZARY(""))
I $D(DEBUG) W !,ZSN," ",$$object^C0XGET1(ZSUB,"rdfs:label")
Q ZSN
;

6
p/C0STBL.m
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@ -1,5 +1,5 @@
C0STBL ; GPL - Smart Container CREATE A TABLE OF NHINV VALUES;2/22/12 17:05
;;0.1;C0S;nopatch;noreleasedate;Build 2
C0STBL ; GPL - Smart Container CREATE A TABLE OF NHINV VALUES;2/22/12 17:05
;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 4
;Copyright 2012 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;
@ -134,4 +134,4 @@ MEDCNT ; COUNT INPATIENT VS OUTPATIENT MEDICATIONS
ZWR SCHED
ZWR ROUTE
Q
;
;

68
p/C0SUTIL.m
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@ -1,34 +1,34 @@
C0SUTIL ; GPL - Smart Processing Utilities ;2/22/12 17:05
;;0.1;C0S;nopatch;noreleasedate;Build 2
;Copyright 2012 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;
;This program is free software; you can redistribute it and/or modify
;it under the terms of the GNU General Public License as published by
;the Free Software Foundation; either version 2 of the License, or
;(at your option) any later version.
;
;This program is distributed in the hope that it will be useful,
;but WITHOUT ANY WARRANTY; without even the implied warranty of
;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;GNU General Public License for more details.
;
;You should have received a copy of the GNU General Public License along
;with this program; if not, write to the Free Software Foundation, Inc.,
;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
;
Q
;
SPDATE(ZDATE) ; extrinsic which returns the Smart date format yyyy-mm-dd
; ZDATE is a fileman format date
N TMPDT
S TMPDT=$$FMTE^XLFDT(ZDATE,"7D") ; ordered date
S TMPDT=$TR(TMPDT,"/","-") ; change slashes to hyphens
I TMPDT="" S TMPDT="UNKNOWN"
N Z2,Z3
S Z2=$P(TMPDT,"-",2)
S Z3=$P(TMPDT,"-",3)
I $L(Z2)=1 S $P(TMPDT,"-",2)="0"_Z2
I $L(Z3)=1 S $P(TMPDT,"-",3)="0"_Z3
Q TMPDT
;
C0SUTIL ; GPL - Smart Processing Utilities ;2/22/12 17:05
;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 4
;Copyright 2012 George Lilly. Licensed under the terms of the GNU
;General Public License See attached copy of the License.
;
;This program is free software; you can redistribute it and/or modify
;it under the terms of the GNU General Public License as published by
;the Free Software Foundation; either version 2 of the License, or
;(at your option) any later version.
;
;This program is distributed in the hope that it will be useful,
;but WITHOUT ANY WARRANTY; without even the implied warranty of
;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;GNU General Public License for more details.
;
;You should have received a copy of the GNU General Public License along
;with this program; if not, write to the Free Software Foundation, Inc.,
;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
;
Q
;
SPDATE(ZDATE) ; extrinsic which returns the Smart date format yyyy-mm-dd
; ZDATE is a fileman format date
N TMPDT
S TMPDT=$$FMTE^XLFDT(ZDATE,"7D") ; ordered date
S TMPDT=$TR(TMPDT,"/","-") ; change slashes to hyphens
I TMPDT="" S TMPDT="UNKNOWN"
N Z2,Z3
S Z2=$P(TMPDT,"-",2)
S Z3=$P(TMPDT,"-",3)
I $L(Z2)=1 S $P(TMPDT,"-",2)="0"_Z2
I $L(Z3)=1 S $P(TMPDT,"-",3)="0"_Z3
Q TMPDT
;

1452
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